BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030868
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana.
 pdb|4GR2|B Chain B, Structure Of Atrbcx1 From Arabidopsis Thaliana
          Length = 128

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 110/125 (88%)

Query: 45  MYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDK 104
           MYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDK
Sbjct: 1   MYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDK 60

Query: 105 FCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETS 164
           F A LMR SSRH  LALRILEVRSAY K DFEWDN+KRLA K VD+SNTRLMR+YVLETS
Sbjct: 61  FLATLMRRSSRHMNLALRILEVRSAYAKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETS 120

Query: 165 HVEKE 169
           HVE +
Sbjct: 121 HVETD 125


>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|B Chain B, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|C Chain C, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|D Chain D, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|E Chain E, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEM|F Chain F, Crystal Structure Of Rbcx In Complex With Substrate
 pdb|2PEN|A Chain A, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|B Chain B, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|C Chain C, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|D Chain D, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|E Chain E, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEN|F Chain F, Crystal Structure Of Rbcx, Crystal Form I
 pdb|2PEQ|A Chain A, Crystal Structure Of Rbcx, Crystal Form Ii
 pdb|2PEQ|B Chain B, Crystal Structure Of Rbcx, Crystal Form Ii
 pdb|2Z45|A Chain A, Crystal Structure Of Zn-bound Orf134
 pdb|2Z45|B Chain B, Crystal Structure Of Zn-bound Orf134
 pdb|2Z46|A Chain A, Crystal Structure Of Native-Orf134
 pdb|2Z46|B Chain B, Crystal Structure Of Native-Orf134
 pdb|2Z46|C Chain C, Crystal Structure Of Native-Orf134
 pdb|2Z46|D Chain D, Crystal Structure Of Native-Orf134
 pdb|2Z46|E Chain E, Crystal Structure Of Native-Orf134
 pdb|2Z46|F Chain F, Crystal Structure Of Native-Orf134
          Length = 134

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98


>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|B Chain B, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|C Chain C, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|D Chain D, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|E Chain E, Crystal Structure Of Rbcx Point Mutant Q29a
 pdb|2PEK|F Chain F, Crystal Structure Of Rbcx Point Mutant Q29a
          Length = 134

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+  L   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98


>pdb|2PEJ|A Chain A, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|B Chain B, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|C Chain C, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|D Chain D, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|E Chain E, Crystal Structure Of Rbcx Point Mutant Y17aY20L
 pdb|2PEJ|F Chain F, Crystal Structure Of Rbcx Point Mutant Y17aY20L
          Length = 134

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L +  T  AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98


>pdb|2Z44|A Chain A, Crystal Structure Of Selenomethionine-Labeled Orf134
          Length = 134

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L    +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEXVLSQIKQSN 98


>pdb|2PEI|A Chain A, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|B Chain B, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|C Chain C, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|D Chain D, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|E Chain E, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|F Chain F, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|G Chain G, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|H Chain H, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|I Chain I, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|J Chain J, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|K Chain K, Crystal Structure Of Selenomethionine-Labeled Rbcx
 pdb|2PEI|L Chain L, Crystal Structure Of Selenomethionine-Labeled Rbcx
          Length = 109

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L    +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEXVLSQIKQSN 98


>pdb|2PY8|A Chain A, Rbcx
 pdb|2PY8|B Chain B, Rbcx
 pdb|2PY8|C Chain C, Rbcx
 pdb|2PY8|D Chain D, Rbcx
          Length = 147

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
            K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E   +K L
Sbjct: 11  VKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKEL 67

Query: 120 ALRILEVR 127
            LRIL VR
Sbjct: 68  VLRILAVR 75


>pdb|2PEO|A Chain A, Crystal Structure Of Rbcx From Anabaena Ca
 pdb|2PEO|B Chain B, Crystal Structure Of Rbcx From Anabaena Ca
 pdb|2WVW|I Chain I, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|J Chain J, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|K Chain K, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|L Chain L, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|M Chain M, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|N Chain N, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|O Chain O, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|P Chain P, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|Q Chain Q, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|R Chain R, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|S Chain S, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|T Chain T, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|U Chain U, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|V Chain V, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|W Chain W, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|2WVW|X Chain X, Cryo-Em Structure Of The Rbcl-Rbcx Complex
 pdb|3HYB|A Chain A, Crystal Structure Of Rbcx From Anabaena, Crystal Form Ii
 pdb|3HYB|B Chain B, Crystal Structure Of Rbcx From Anabaena, Crystal Form Ii
 pdb|3RG6|C Chain C, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|D Chain D, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|E Chain E, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
 pdb|3RG6|F Chain F, Crystal Structure Of A Chaperone-Bound Assembly
           Intermediate Of Form I Rubisco
          Length = 155

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK L ++ TY A+R + AQL   NP     L  F     + DG+K+  +L  E      L
Sbjct: 31  AKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKP---DL 86

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHV 166
           ALRI+ VR    +   E+  L  + +  + ++N    R ++   + V
Sbjct: 87  ALRIMTVREHIAEEIAEF--LPEMVVTGIQQANMEKRRQHLERMTQV 131


>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana
 pdb|4GR6|B Chain B, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana
          Length = 126

 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 61  KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
           K + N+FTY AVR +  QL   NP  Y      +  +   DG +F   L +ES     LA
Sbjct: 17  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQE---LA 73

Query: 121 LRILEVR-SAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLET 163
            R++  R   Y K   + D+ K    + + + N  LMR+ ++ET
Sbjct: 74  ERVMITRLHLYGKWIKKADHGK--IYQEISDENLALMRERLMET 115


>pdb|3Q20|A Chain A, Crystal Structure Of Rbcx C103a Mutant From
           Thermosynechococcus Elongatus
 pdb|3Q20|B Chain B, Crystal Structure Of Rbcx C103a Mutant From
           Thermosynechococcus Elongatus
          Length = 126

 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           +  K L ++ TY AVR +  QL   +P     L +F  +  + DG+++   L RE     
Sbjct: 9   QTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFRE---QP 65

Query: 118 GLALRILEVR 127
            L  RIL VR
Sbjct: 66  DLGFRILTVR 75


>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
           Akr11a(Apo)
 pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
           Akr11a(Holo)
          Length = 312

 Score = 29.6 bits (65), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 103 DKFCADLMRESSRHKGLALRILEVRSAYCKR--DFEWDNLKRLAIKTVDESNTRLMRDYV 160
           ++   +++RE +R       ++  ++A+ K+  DF +DN      K+VDES  RL  DY+
Sbjct: 64  EELIGEVLREFNRED----VVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYI 119


>pdb|2P82|A Chain A, Cysteine Protease Atg4a
 pdb|2P82|B Chain B, Cysteine Protease Atg4a
 pdb|2P82|C Chain C, Cysteine Protease Atg4a
 pdb|2P82|D Chain D, Cysteine Protease Atg4a
          Length = 355

 Score = 28.1 bits (61), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 5/135 (3%)

Query: 24  ASWPCNLQRSPRSTGTIHCQKMYVPGFGEA--SPEAKGAKHLHNFFTYIAVRIITAQLQS 81
           ++W   L   P   G      +YV  F E    P++ GA        Y  +  +  +L  
Sbjct: 214 SAWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIF 273

Query: 82  YNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLK 141
            +P   +  ++  E   +ND    C   ++   R   L L        +CK + ++DN  
Sbjct: 274 LDPHTTQTFVDTEENGTVNDQTFHC---LQSPQRMNILNLDPSVALGFFCKEEKDFDNWC 330

Query: 142 RLAIKTVDESNTRLM 156
            L  K + + N R+ 
Sbjct: 331 SLVQKEILKENLRMF 345


>pdb|3FZZ|A Chain A, Structure Of Grc
 pdb|3FZZ|B Chain B, Structure Of Grc
          Length = 227

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 21  RNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNF-FTYIAVRIITAQL 79
           R +A  P NL R  R+       + YV G+G+ +P+ +  K LH    T    ++  +Q 
Sbjct: 101 RTRAVRPLNLPR--RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158

Query: 80  Q-SYN 83
           Q SYN
Sbjct: 159 QSSYN 163


>pdb|2IU4|A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
 pdb|2IU4|B Chain B, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
          Length = 336

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 68  TYIAVRIITAQLQSYNPEAYKEL-MEFLERHPLNDGDKFCADLMRESSRHKGLALRIL-- 124
            ++ ++   A L+ +N EA KE   E ++   +   D    +      RH+G+A  IL  
Sbjct: 97  VFVIIKNFEADLKEFN-EAIKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLH 155

Query: 125 EVRSAYCKRDFEWDNLKRLAI 145
           ++  A+ K     D +++LA+
Sbjct: 156 KILGAFAKEGGSIDEIEQLAL 176


>pdb|2IU6|A Chain A, Regulation Of The Dha Operon Of Lactococcus Lactis
 pdb|2IU6|B Chain B, Regulation Of The Dha Operon Of Lactococcus Lactis
          Length = 336

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 68  TYIAVRIITAQLQSYNPEAYKEL-MEFLERHPLNDGDKFCADLMRESSRHKGLALRIL-- 124
            ++ ++   A L+ +N EA KE   E ++   +   D    +      RH+G+A  IL  
Sbjct: 97  VFVIIKNFEADLKEFN-EAIKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTILLH 155

Query: 125 EVRSAYCKRDFEWDNLKRLAI 145
           ++  A+ K     D +++LA+
Sbjct: 156 KILGAFAKEGGSIDEIEQLAL 176


>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
 pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
          Length = 227

 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 21  RNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNF-FTYIAVRIITAQL 79
           R +A  P NL R  R+       + YV G+G+ +P+ +  K LH    T    ++  +Q 
Sbjct: 101 RTRAVRPLNLPR--RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158

Query: 80  Q-SYN 83
           Q SYN
Sbjct: 159 QSSYN 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,944
Number of Sequences: 62578
Number of extensions: 186682
Number of successful extensions: 476
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 19
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)