BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030868
         (170 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus GN=Ubqlnl PE=1 SV=2
          Length = 610

 Score = 30.4 bits (67), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 27  PCNLQRSPRSTGTIHCQKM---------------YVPGFGEASPEAKGAKHLHNFFTYIA 71
           PC+  R+P+   ++ CQ                   P  G  SPE    +H+      + 
Sbjct: 121 PCHQDRNPKGNSSMVCQSAGMNETKVESSLLMEPEAPKVGTESPEVGSLEHIAQVLENLC 180

Query: 72  VRIITAQLQSYN--PEAYKELMEFLERHP-----LNDGDKFCADLMRESSRHKGLALRIL 124
           V+ + + +   +  P     + E ++++P     L++ +  C  L  E  RH  +   I+
Sbjct: 181 VQSLLSNMDFVHQMPPEQPYMEELIQQNPEVSHLLDNSEILCQTL--ELVRHLAIIQEIM 238

Query: 125 EVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHV 166
           +++      ++  ++   L ++TV   N  L + YV    H+
Sbjct: 239 QIQQPAQNPEYPPNSQPFLGLETVPNGNNHLGQSYVNNNDHM 280


>sp|P42218|KPSS5_ECOLX Capsule polysaccharide export protein KpsS OS=Escherichia coli
           GN=kpsS PE=4 SV=1
          Length = 389

 Score = 30.0 bits (66), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 63  LHNFFTYIAVR-IITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLAL 121
           + N  +Y  VR  I   + S++ +A KE    ++ HP++ G +    L++  S+  GL  
Sbjct: 240 IRNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGE 299

Query: 122 RILEV 126
           RIL V
Sbjct: 300 RILYV 304


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,331,560
Number of Sequences: 539616
Number of extensions: 2357476
Number of successful extensions: 4989
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4987
Number of HSP's gapped (non-prelim): 4
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)