Query 030868
Match_columns 170
No_of_seqs 93 out of 101
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2peq_A ORF134; helix bundle, p 100.0 3.5E-45 1.2E-49 287.5 13.6 108 56-168 7-114 (134)
2 2py8_A Hypothetical protein RB 100.0 2.9E-45 1E-49 291.6 12.8 107 56-167 7-113 (147)
3 3ka1_A RBCX protein; chaperone 100.0 3.3E-43 1.1E-47 273.8 12.6 108 56-168 7-114 (126)
4 3hyb_A RBCX protein; rubisco, 100.0 3.9E-42 1.3E-46 275.0 13.0 116 46-167 14-132 (155)
5 3zta_A MTR, anti-sigma-factor 59.5 28 0.00096 26.6 6.5 50 103-156 88-142 (146)
6 2l9d_A Uncharacterized protein 47.8 4.7 0.00016 30.4 0.5 26 75-100 66-91 (108)
7 2w9y_A CE-FAR-7, fatty acid/re 33.6 91 0.0031 24.1 5.8 56 75-133 20-76 (140)
8 2z6o_A UFM1-conjugating enzyme 28.6 37 0.0013 27.3 2.9 20 99-121 27-46 (172)
9 1y6i_A Mg-chelatase cofactor G 25.5 1.8E+02 0.0063 24.1 6.7 85 74-163 22-123 (233)
10 2zop_A Putative uncharacterize 25.5 1.6E+02 0.0056 21.3 5.7 51 86-148 62-112 (114)
11 1kft_A UVRC, excinuclease ABC 22.6 59 0.002 21.4 2.6 45 45-94 27-76 (78)
12 1vp8_A Hypothetical protein AF 21.7 1E+02 0.0035 25.3 4.3 30 50-79 119-151 (201)
No 1
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=100.00 E-value=3.5e-45 Score=287.48 Aligned_cols=108 Identities=31% Similarity=0.476 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868 56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF 135 (170)
Q Consensus 56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F 135 (170)
++|||++|++||||+|||||++||+||||++|.||++|+++||++|||+||++||+|+ ++||+|||+||+|||+++
T Consensus 7 ~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~---~~LAlRIM~VRe~ya~e~- 82 (134)
T 2peq_A 7 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---KELVLRILTVRENLAEGV- 82 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHC---HHHHHHHHHHHHHHHHHH-
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999996
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhccccc
Q 030868 136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVEK 168 (170)
Q Consensus 136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e~ 168 (170)
|+++++++++.|+++|++|||+||++.++++.
T Consensus 83 -~e~l~~m~~~~I~~~N~~lmR~~ler~t~~~~ 114 (134)
T 2peq_A 83 -LEFLPEMVLSQIKQSNGNHRRSLLERLTQVDS 114 (134)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999999999998863
No 2
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=100.00 E-value=2.9e-45 Score=291.64 Aligned_cols=107 Identities=28% Similarity=0.434 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868 56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF 135 (170)
Q Consensus 56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F 135 (170)
.+|||++|++||||+||||||+||+|+||+.|.||++|+++|||+|||+||++||+|+ ++||+|||+||+|||+++|
T Consensus 7 ~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~---~~LAlRIMeVR~~ya~e~f 83 (147)
T 2py8_A 7 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDEN---KELVLRILAVREDIAESVL 83 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhcccc
Q 030868 136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVE 167 (170)
Q Consensus 136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e 167 (170)
|| +++++++.|+++|++|||+||++.++++
T Consensus 84 e~--l~em~~~~I~~~N~elmRq~leR~t~~~ 113 (147)
T 2py8_A 84 DF--LPGMTRNSLAESNIAHRRHLLERLTRTV 113 (147)
T ss_dssp GG--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99 9999999999999999999999988765
No 3
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=100.00 E-value=3.3e-43 Score=273.82 Aligned_cols=108 Identities=25% Similarity=0.393 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868 56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF 135 (170)
Q Consensus 56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F 135 (170)
.+|||++|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+ ++||+|||+||+|||+++
T Consensus 7 a~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~---~~LA~RIM~vR~hla~~v- 82 (126)
T 3ka1_A 7 AKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQ---PDLGFRILTVREHLAEMV- 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHH-
Confidence 4899999999999999999999999999999999999999999999999999999997 999999999999999987
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhccccc
Q 030868 136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVEK 168 (170)
Q Consensus 136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e~ 168 (170)
|+++++|+.+.|+++|+++||+||++.+++..
T Consensus 83 -~d~l~eMv~~~I~q~N~e~~Rq~Ler~t~~~~ 114 (126)
T 3ka1_A 83 -ADYLPEMLRAGIQQANLQQRAQQLERMTQVSE 114 (126)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56699999999999999999999999988753
No 4
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=100.00 E-value=3.9e-42 Score=274.98 Aligned_cols=116 Identities=28% Similarity=0.410 Sum_probs=100.7
Q ss_pred eecCCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHH
Q 030868 46 YVPGFGEASP---EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALR 122 (170)
Q Consensus 46 ~Vp~fGG~sP---E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~R 122 (170)
.||.-.-..+ .+|||++|++||||+|||||++||+||||+.|.||++|++ +|++|||+||++||+|+ ++||+|
T Consensus 14 ~~~~~~~m~~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~---~~LA~R 89 (155)
T 3hyb_A 14 LVPRGSHMNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEK---PDLALR 89 (155)
T ss_dssp SSCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhC---HHHHHH
Confidence 4554444443 3899999999999999999999999999999999999999 99999999999999997 999999
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhHHHHHHHHhhhcccc
Q 030868 123 ILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVE 167 (170)
Q Consensus 123 IMevR~~ya~~~FeWd~lk~la~k~i~~~N~~LMRe~l~et~~~e 167 (170)
||+||+|||+++||| +++|+.+.|+++|+++||+||++.+++.
T Consensus 90 IM~VRehlae~v~ef--lpeMv~~~IqqaN~el~Rq~LeR~t~~~ 132 (155)
T 3hyb_A 90 IMTVREHIAEEIAEF--LPEMVVTGIQQANMEKRRQHLERMTQVS 132 (155)
T ss_dssp HHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998665 8999999999999999999999998874
No 5
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=59.48 E-value=28 Score=26.62 Aligned_cols=50 Identities=28% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHHHHHHhcccCC-hhhHHHHHHHHHHHhhcccchHHHHHHH----HHHHHHHhHHHH
Q 030868 103 DKFCADLMRESSRH-KGLALRILEVRSAYCKRDFEWDNLKRLA----IKTVDESNTRLM 156 (170)
Q Consensus 103 d~fL~~Lmre~~~~-~~LA~RIMevR~~ya~~~FeWd~lk~la----~k~i~~~N~~LM 156 (170)
|.|+.- ++|.--+ +..|.-|-+||.|+.+. -.++-+|+ .+-|++.|-.||
T Consensus 88 dsfisv-ireqyhdlqaaasyittvrdhifkg---tsfllkmalqtqreviqkqnealm 142 (146)
T 3zta_A 88 DSFISV-IREQYHDLQAAASYITTVRDHIFKG---TSFLLKMALQTQREVIQKQNEALM 142 (146)
T ss_dssp HHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445543 3443222 66789999999999997 56677776 567888898887
No 6
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=47.83 E-value=4.7 Score=30.40 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=23.0
Q ss_pred HHHHhhccChhhHHHHHHHHhcCCCC
Q 030868 75 ITAQLQSYNPEAYKELMEFLERHPLN 100 (170)
Q Consensus 75 Vl~QL~e~np~~y~wL~~Fl~~~pl~ 100 (170)
|=.+|++.+|.+|..+++|...|.|+
T Consensus 66 Vd~~L~~~~P~af~fvm~FA~dN~L~ 91 (108)
T 2l9d_A 66 VDLKLKDTNPEGFNQLMHFATENQLN 91 (108)
T ss_dssp EETHHHHHCHHHHHHHHHHHHHHTEE
T ss_pred ECcHhhhcChHHHHHHHHHHHhCCce
Confidence 33678999999999999999999985
No 7
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=33.57 E-value=91 Score=24.13 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHhhccChhhHHHHHHHHhcCCC-CCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhc
Q 030868 75 ITAQLQSYNPEAYKELMEFLERHPL-NDGDKFCADLMRESSRHKGLALRILEVRSAYCKR 133 (170)
Q Consensus 75 Vl~QL~e~np~~y~wL~~Fl~~~pl-~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~ 133 (170)
|..-+.+.+++.=.-|.++..++.= ++-+++|++|=..+ ++|+.|++.+|.-+..+
T Consensus 20 v~~f~~~Lt~eeK~~Lkev~kn~~~f~~e~e~i~alK~KS---p~L~~K~~~l~~~lk~K 76 (140)
T 2w9y_A 20 QLEFSSSITADEKPVLHEVFQKHSCFSQCGEMIDEVSKKH---PELGKRLATVLEGNKKR 76 (140)
T ss_dssp HHHHHHHCCTTTHHHHHHHHTTCCC----TTHHHHHHHHC---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhC---HHHHHHHHHHHHHHHHH
Confidence 3444556666666667777665433 45677999998887 89999999999999887
No 8
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=28.57 E-value=37 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHhcccCChhhHH
Q 030868 99 LNDGDKFCADLMRESSRHKGLAL 121 (170)
Q Consensus 99 l~DGd~fL~~Lmre~~~~~~LA~ 121 (170)
++|||+|.+.|++|- +.|-.
T Consensus 27 p~~~~~w~~RL~eE~---k~L~k 46 (172)
T 2z6o_A 27 PRDRELWVQRLKEEY---QSLIR 46 (172)
T ss_dssp TTCTHHHHHHHHHHH---HHHHH
T ss_pred CCccHHHHHHHHHHH---HHHHH
Confidence 689999999999996 55544
No 9
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.48 E-value=1.8e+02 Score=24.09 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHhhccChhhHHHHHHHHhcCCCCCHHHH-----HHHHHhcccCChhhHHHHHHHHHHHh--------hcccchHHH
Q 030868 74 IITAQLQSYNPEAYKELMEFLERHPLNDGDKF-----CADLMRESSRHKGLALRILEVRSAYC--------KRDFEWDNL 140 (170)
Q Consensus 74 ~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~f-----L~~Lmre~~~~~~LA~RIMevR~~ya--------~~~FeWd~l 140 (170)
.++.|+.+...+...-|++|+....++++++| ++.|...+ +....-++. .++. +...++..+
T Consensus 22 ~~i~~i~~~~~~~~~~~~~~l~~~~p~~~~~w~~g~~~~~l~~~~---~~~i~~~l~--~~~~~~~~~l~S~~gidY~~L 96 (233)
T 1y6i_A 22 TAIAALAEMGEGGQGILLDYLAKNVPLEKPVLAVGNVYQTLRNLE---QETITTQLQ--RNYPTGIFPLQSAQGIDYLPL 96 (233)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHCSCSSCCHHHHHHHHHHHHTC---CHHHHHHHH--HHCTTCSSCCCCSSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHhcC---cHHHHHHHH--hcCCCCCcccccccCcCHHHH
Confidence 45677788888888889999999888899889 55555554 222222221 2211 123455555
Q ss_pred HHHH----HHHHHHHhHHHHHHHHhhh
Q 030868 141 KRLA----IKTVDESNTRLMRDYVLET 163 (170)
Q Consensus 141 k~la----~k~i~~~N~~LMRe~l~et 163 (170)
+.+. .+.-+++..++|.+-+.+.
T Consensus 97 ~~lL~~~~wkeAD~eT~~lml~~ag~~ 123 (233)
T 1y6i_A 97 QEALGSQDFETADEITRDKLCELAGPG 123 (233)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhchh
Confidence 5542 4667788888888876543
No 10
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=25.46 E-value=1.6e+02 Score=21.33 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 030868 86 AYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTV 148 (170)
Q Consensus 86 ~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~FeWd~lk~la~k~i 148 (170)
.|..|.+++... +++++++.|... ++..=+..+|++++-= +| +|+.+.-.|
T Consensus 62 l~~~l~~wl~~~---~~~~l~~~l~~~-----d~~~Y~~~T~e~La~~--~W--lKRfAea~l 112 (114)
T 2zop_A 62 LGNDLAQVLGYR---DLRELAEAAREA-----ELLQYLRLTREVLAAA--EW--FKRFAQALI 112 (114)
T ss_dssp HHHHHHHHTTCS---SHHHHHHHHHHC-----CHHHHHHHHHHHHHHH--HH--HHHHHHHHC
T ss_pred HHHHHHHHHhhc---CHHHHHHHHHhC-----CHHHHHHHHHHHHHHH--HH--HHHHHHHHh
Confidence 455566666654 688899888654 4666667788888862 25 888775544
No 11
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=22.61 E-value=59 Score=21.35 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=23.4
Q ss_pred eeecCCCCCChhhHHHHHHHHHH-HHHHHHHH-HHHh---hccChhhHHHHHHHH
Q 030868 45 MYVPGFGEASPEAKGAKHLHNFF-TYIAVRII-TAQL---QSYNPEAYKELMEFL 94 (170)
Q Consensus 45 m~Vp~fGG~sPE~kaak~L~~yf-Ty~AvR~V-l~QL---~e~np~~y~wL~~Fl 94 (170)
.-|||.|. ++|+.|.+.| +..++.-. .++| .+..+..+..+.+|+
T Consensus 27 ~~I~gIG~-----~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 27 ETIEGVGP-----KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp GGCTTCSS-----SHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred hcCCCCCH-----HHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 45788883 3567777766 33333221 1222 334555566666555
No 12
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=21.75 E-value=1e+02 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCCCChhhHHHHHHHHHH---HHHHHHHHHHHh
Q 030868 50 FGEASPEAKGAKHLHNFF---TYIAVRIITAQL 79 (170)
Q Consensus 50 fGG~sPE~kaak~L~~yf---Ty~AvR~Vl~QL 79 (170)
|||.||-.--|.+|++.| +=+||-+++=-+
T Consensus 119 fGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAa 151 (201)
T 1vp8_A 119 LGGVSRTEAIAEALRSLFGHGLKVCVEITIMAA 151 (201)
T ss_dssp TCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEEeeeec
Confidence 899999999999999777 567887776544
Done!