Query 030869
Match_columns 170
No_of_seqs 197 out of 1179
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 08:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030869.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030869hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b12a_ b.87.1.2 (A:) Type 1 s 100.0 6.4E-37 4.6E-41 244.8 11.4 120 25-154 1-229 (247)
2 d1f39a_ b.87.1.1 (A:) lambda r 99.2 7.8E-11 5.7E-15 81.0 11.2 90 30-156 6-101 (101)
3 d1jhfa2 b.87.1.1 (A:73-198) Le 98.9 3.4E-09 2.5E-13 75.3 9.5 84 30-149 39-124 (126)
4 d1umua_ b.87.1.1 (A:) UmuD' {E 98.7 3.1E-08 2.3E-12 68.3 9.0 84 29-149 20-104 (105)
5 d2gyci1 b.39.1.1 (I:2-122) Rib 70.9 11 0.00083 24.8 8.5 30 111-140 77-106 (121)
6 d1aono_ b.35.1.1 (O:) Chaperon 61.3 15 0.0011 22.7 6.9 86 56-145 7-95 (97)
7 d2j01o1 b.39.1.1 (O:1-122) Rib 61.3 18 0.0013 23.7 8.7 29 111-140 78-106 (122)
8 d1p3ha_ b.35.1.1 (A:) Chaperon 60.6 13 0.00098 23.1 6.2 86 56-145 9-97 (99)
9 d1we3o_ b.35.1.1 (O:) Chaperon 57.2 12 0.00085 23.3 5.4 21 56-78 8-28 (96)
10 d1zvpa1 d.58.18.9 (A:2-67) Hyp 53.7 2.6 0.00019 25.0 1.5 16 37-62 11-26 (66)
11 d1whia_ b.39.1.1 (A:) Ribosoma 47.9 32 0.0023 22.4 8.5 29 111-140 78-106 (122)
12 d1twia1 b.49.2.3 (A:15-49,A:31 41.4 10 0.00074 26.3 3.3 24 56-82 97-120 (170)
13 d2io8a2 d.3.1.15 (A:10-200) Gl 40.2 25 0.0018 24.8 5.4 35 69-103 101-136 (191)
14 d1hr0w_ b.40.4.5 (W:) Translat 39.6 9.5 0.00069 22.7 2.5 19 56-77 50-68 (71)
15 d1hkva1 b.49.2.3 (A:2-45,A:311 35.3 16 0.0012 25.7 3.5 24 56-81 112-135 (181)
16 d7odca1 b.49.2.3 (A:2-43,A:284 34.8 14 0.001 25.6 3.2 24 56-82 122-145 (177)
17 d1f3ta1 b.49.2.3 (A:14-43,A:28 34.3 15 0.0011 25.3 3.2 24 56-82 110-133 (169)
18 d1ogya1 b.52.2.2 (A:682-801) P 31.4 28 0.002 22.0 4.1 50 56-119 36-85 (120)
19 d1wida_ b.142.1.2 (A:) DNA-bin 29.2 27 0.0019 22.0 3.7 15 69-83 83-97 (117)
20 d1ah9a_ b.40.4.5 (A:) Translat 28.2 9.4 0.00068 22.8 1.0 11 70-80 45-55 (71)
21 d1vqok1 b.39.1.1 (K:1-132) Rib 25.6 42 0.003 22.2 4.2 67 71-140 47-117 (132)
22 d2as0a1 b.122.1.9 (A:1-72) Hyp 22.6 66 0.0048 18.2 4.8 15 69-83 31-45 (72)
23 d2diqa1 b.34.9.1 (A:8-104) Tud 20.2 82 0.006 18.4 4.9 50 70-120 25-77 (97)
No 1
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=6.4e-37 Score=244.80 Aligned_cols=120 Identities=32% Similarity=0.444 Sum_probs=107.4
Q ss_pred HhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEcccccc------------CCCccceEEEEecCCCCCCceEEE
Q 030869 25 SDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK------------YKFSHGDVIVFCSPSNHKEKHVKR 92 (170)
Q Consensus 25 ~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~------------~~~~rGDiV~f~~p~~~~~~~vKR 92 (170)
+.|+++++.|+++||+|||+. ||+|+|+|+.|.. ..+++||+|+|..|.++...++||
T Consensus 1 R~f~~~~f~IPs~SMePTL~~----------GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR 70 (247)
T d1b12a_ 1 RSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKR 70 (247)
T ss_dssp CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEE
T ss_pred CEEEEEEEEeCcccccchhcc----------CCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCcccccc
Confidence 368999999999999999999 9999999988754 355999999999999888899999
Q ss_pred EEEeCCCeEecc--------------------------------------------------------------------
Q 030869 93 IIGLPGDWIGTP-------------------------------------------------------------------- 104 (170)
Q Consensus 93 Vvg~~GD~v~~~-------------------------------------------------------------------- 104 (170)
|+|+|||++.+.
T Consensus 71 ~ig~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
T d1b12a_ 71 AVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSER 150 (247)
T ss_dssp EEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEE
T ss_pred ccCCCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeee
Confidence 999999999750
Q ss_pred -----------------------------CCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCC
Q 030869 105 -----------------------------MTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR 154 (170)
Q Consensus 105 -----------------------------~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~ 154 (170)
.....++||+|||||||||+++|.|||+||+||+++|+|||.+++||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~ 229 (247)
T d1b12a_ 151 KETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK 229 (247)
T ss_dssp EEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred eeccCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCC
Confidence 01135789999999999999999999999999999999999999999865
No 2
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.21 E-value=7.8e-11 Score=81.04 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=70.3
Q ss_pred EEEEEcCCCc------ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030869 30 SIVPVRGSSM------SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 30 ~~~~v~~~SM------~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~ 103 (170)
+..+|.|+|| +|++.+ ||+|++++-. +++.||+|++.... +...+||+.-.+
T Consensus 6 F~l~V~GdSM~~~~~~ep~i~~----------Gd~viVd~~~----~~~~g~ivva~~~~--~~~~vKr~~~~~------ 63 (101)
T d1f39a_ 6 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------ 63 (101)
T ss_dssp EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECTT--SCEEEEEEEEET------
T ss_pred EEEEEeCCccCCCcccCCCcCC----------CCEEEEEecC----ccCCCCEEEEEECC--CeEEEEEEEEcC------
Confidence 4578999999 899999 9999999864 78999999887653 457899997543
Q ss_pred cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030869 104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 156 (170)
Q Consensus 104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g 156 (170)
|++++..+|+.. ...... ..-.|+|+|+..+||-..||
T Consensus 64 -----------~~~~L~s~N~~y--~~i~~~--~~~~IiG~Vv~s~~p~~~~~ 101 (101)
T d1f39a_ 64 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 101 (101)
T ss_dssp -----------TEEEEECSSTTS--CCEECS--TTCEEEEEEEEEECCGGGGC
T ss_pred -----------CEEEEEECCCCC--CCCcCC--CCcEEEEEEEEEECcHHHCC
Confidence 488899999742 222221 34589999999999988775
No 3
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.92 E-value=3.4e-09 Score=75.29 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=63.7
Q ss_pred EEEEEcCCCcccc-cCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCC
Q 030869 30 SIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND 108 (170)
Q Consensus 30 ~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~ 108 (170)
...+|.|+||+|+ +.. ||++++++.. +++.||+|++... ++..+||+.-.+
T Consensus 39 f~lrV~GdSM~~~~i~~----------gd~viv~~~~----~~~~G~ivv~~~~---ge~~vKrl~~~~----------- 90 (126)
T d1jhfa2 39 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARID---DEVTVKRLKKQG----------- 90 (126)
T ss_dssp EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEET---TEEEEEEEEEET-----------
T ss_pred EEEEEcCCcccCcccCC----------CEEEEEeccc----cccCCCEEEEEEC---CEEEEEEEEEcC-----------
Confidence 4689999999998 888 9999999764 8999999999984 578999998644
Q ss_pred eEEccCCeEEEecCCCCCCCCCCcccc-ccCCCEeEEEEEEE
Q 030869 109 VVKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLVKGRVTHIL 149 (170)
Q Consensus 109 ~~~vp~g~~~v~gDn~~~S~DSR~~G~-V~~~~I~Gkv~~~~ 149 (170)
|.+++..+|+... ...+.+ =..=.|+|+|+.++
T Consensus 91 ------~~~~L~s~N~~y~--pi~~~~~~~~~~IiG~Vv~vi 124 (126)
T d1jhfa2 91 ------NKVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVI 124 (126)
T ss_dssp ------TEEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEE
T ss_pred ------CEEEEecCCcCCC--CeEccCCCCcEEEEEEEEEEE
Confidence 4889999997422 221110 01126999999886
No 4
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=98.73 E-value=3.1e-08 Score=68.25 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=63.3
Q ss_pred eEEEEEcCCCc-ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030869 29 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 107 (170)
Q Consensus 29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~ 107 (170)
.+..+|.|+|| .|.+.+ ||++++++.. +++.||+|++... ++..+||+.- .
T Consensus 20 ~f~~rV~GdSM~~~gI~~----------GDlliVd~~~----~~~~g~ivva~i~---ge~~vKrl~~-~---------- 71 (105)
T d1umua_ 20 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQL-R---------- 71 (105)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEET---TEEEEEEEEC-S----------
T ss_pred eEEEEEcCCccccCccCC----------CCEEEEEccc----ccccCcEEEEEEC---CEEEEEEEEE-C----------
Confidence 35689999999 588999 9999999865 8899999999984 5789999852 2
Q ss_pred CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030869 108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL 149 (170)
Q Consensus 108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~ 149 (170)
|+.+++.+|+. ++.....+-..-.|.|+|+.++
T Consensus 72 -------~~~~L~~~N~~--y~~i~i~~~~~~~I~GvVv~vi 104 (105)
T d1umua_ 72 -------PTVQLIPMNSA--YSPITISSEDTLDVFGVVIHVV 104 (105)
T ss_dssp -------SSCEEECSSTT--SCCEECCTTSCEEEEEEEEEEE
T ss_pred -------CcEEEECCCCC--CCCEEcCCCCCEEEEEEEEEEE
Confidence 35677888863 3444332222335999998876
No 5
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}
Probab=70.94 E-value=11 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=21.8
Q ss_pred EccCCeEEEecCCCCCCCCCCccccccCCC
Q 030869 111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
.--++.+-++.++..+..-+|-+|||+.+.
T Consensus 77 ~F~~Na~VLi~~~~~~p~GTrI~Gpv~~el 106 (121)
T d2gyci1 77 RFDGNACVLLNNNSEQPIGTRIFGPVTREL 106 (121)
T ss_dssp CCSSCEEEEECSSSSCBSSSCCCSCBCSTT
T ss_pred EeCCCEEEEEcCCCCCcccCeEEccchHHH
Confidence 344566777766644667899999999875
No 6
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=61.29 E-value=15 Score=22.69 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEEecCCCC---CCCCCCc
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPS---SSLDSRS 132 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v~gDn~~---~S~DSR~ 132 (170)
||+||+.+.... +-..|-|++=. ....+.....|+++......-.....+..+..|..-+.+++.. ...|...
T Consensus 7 gdrVLVk~~~~e--~kT~gGIiLp~--~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg~~ 82 (97)
T d1aono_ 7 HDRVIVKRKEVE--TKSAGGIVLTG--SAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEE 82 (97)
T ss_dssp TTEEEEEECCTT--CTTTTSSCCCC--CCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSSCE
T ss_pred CCEEEEEEcccc--cEecceEEECC--ccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECCEE
Confidence 899999886532 22345555421 1223344556665542211111111222344444444444321 1244444
Q ss_pred cccccCCCEeEEE
Q 030869 133 FGPIPLGLVKGRV 145 (170)
Q Consensus 133 ~G~V~~~~I~Gkv 145 (170)
|=.++.++|+|++
T Consensus 83 y~ii~e~dIlavi 95 (97)
T d1aono_ 83 VLIMSESDILAIV 95 (97)
T ss_dssp EEEEETTTEEEEE
T ss_pred EEEEEHHHEEEEE
Confidence 5566777777765
No 7
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=61.29 E-value=18 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=21.1
Q ss_pred EccCCeEEEecCCCCCCCCCCccccccCCC
Q 030869 111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
.-.++.+-++.++ .+..-+|-+|||+.+.
T Consensus 78 ~F~~Na~VLl~~~-~~p~GTrI~Gpv~~el 106 (122)
T d2j01o1 78 RFDDNAAVIINNQ-LEPRGTRVFGPVAREL 106 (122)
T ss_dssp ECSSCEEEEECTT-SCCSSSCCCSCCCTHH
T ss_pred EcCCCEEEEECCC-CCEeeeEEeccchHHH
Confidence 4445666666554 5889999999999763
No 8
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=60.62 E-value=13 Score=23.15 Aligned_cols=86 Identities=7% Similarity=0.064 Sum_probs=41.2
Q ss_pred CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccC-CCCeEEccCCeEEEecCCCC--CCCCCCc
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPM-TNDVVKVPNGHCWVEGDNPS--SSLDSRS 132 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~-~~~~~~vp~g~~~v~gDn~~--~S~DSR~ 132 (170)
||+||+.+.... +-..|-|++=.. ..++.....|+++.-....-.. ...+..+..|..-+.+.+.. -..|...
T Consensus 9 gdrVLVk~~~~~--~kT~gGIiLp~~--~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg~~ 84 (99)
T d1p3ha_ 9 EDKILVQANEAE--TTTASGLVIPDT--AKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEE 84 (99)
T ss_dssp TTEEEEEECCCC--CBCTTSCBCCCS--SCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTEE
T ss_pred CCEEEEEEcchh--cccccceEeccc--cccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECCEE
Confidence 899999876532 334555665221 2244556667766543221100 01122244444444444321 1123333
Q ss_pred cccccCCCEeEEE
Q 030869 133 FGPIPLGLVKGRV 145 (170)
Q Consensus 133 ~G~V~~~~I~Gkv 145 (170)
|=.++.++|+|++
T Consensus 85 y~ii~e~dIlavi 97 (99)
T d1p3ha_ 85 YLILSARDVLAVV 97 (99)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHEEEEE
Confidence 4466677777765
No 9
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Probab=57.21 E-value=12 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=13.7
Q ss_pred CcEEEEEccccccCCCccceEEE
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIV 78 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~ 78 (170)
||+||+.+.... +-..|-|++
T Consensus 8 gdrVLVk~~~~~--~kT~gGIiL 28 (96)
T d1we3o_ 8 GDRVVVKRIEEE--PKTKGGIVL 28 (96)
T ss_dssp TTCEEEEECCCC--SSCTTCCCC
T ss_pred CCEEEEEEcccc--ceecccEEe
Confidence 899999886632 334566665
No 10
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=53.70 E-value=2.6 Score=25.01 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.4
Q ss_pred CCcccccCCCCCCCCCCCCCcEEEEE
Q 030869 37 SSMSPTFNPTTDSFMGSLSDDHVLME 62 (170)
Q Consensus 37 ~SM~Ptl~~~~~~~~~~~~gd~vlv~ 62 (170)
.+|.|.+.+ |++|++.
T Consensus 11 ~~m~P~L~~----------g~yVF~t 26 (66)
T d1zvpa1 11 QSMSPELMA----------GDYVFCT 26 (66)
T ss_dssp HTCEEEECS----------SCEEEEE
T ss_pred HHCCceECC----------CcEEEEE
Confidence 379999999 9999996
No 11
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.88 E-value=32 Score=22.41 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=21.6
Q ss_pred EccCCeEEEecCCCCCCCCCCccccccCCC
Q 030869 111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
.-.+|.+-++.++ .+..-+|-+|||+.+.
T Consensus 78 ~F~~Na~VLl~~~-~~P~GTrI~Gpv~~el 106 (122)
T d1whia_ 78 RFDENACVIIRDD-KSPRGTRIFGPVAREL 106 (122)
T ss_dssp CCSSCEEEEECTT-SCBSSSCBCSCBCTHH
T ss_pred EeCCCEEEEECCC-CCEeeeeEeccchHHH
Confidence 3446677777665 5889999999999753
No 12
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=41.40 E-value=10 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.3
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
+|++.-+... .+++.||+++|..-
T Consensus 97 ~D~l~~~~~l---p~l~~GD~l~i~~~ 120 (170)
T d1twia1 97 SDVFGRDREL---DKVEVGDVLAIFDV 120 (170)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEEECC
T ss_pred ceEEEEeeec---cccCCCCEEEEeCc
Confidence 8888776544 37899999999864
No 13
>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}
Probab=40.22 E-value=25 Score=24.83 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.2
Q ss_pred CCCccceEEEEecCC-CCCCceEEEEEEeCCCeEec
Q 030869 69 YKFSHGDVIVFCSPS-NHKEKHVKRIIGLPGDWIGT 103 (170)
Q Consensus 69 ~~~~rGDiV~f~~p~-~~~~~~vKRVvg~~GD~v~~ 103 (170)
..|+.||++++.... ...-=.|-.|..+.++.|.+
T Consensus 101 ~~P~~Gdllv~~~~~~~~~~GHVavV~~v~~~~v~i 136 (191)
T d2io8a2 101 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRI 136 (191)
T ss_dssp SCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEE
T ss_pred CCCCCCcEEEECCCCCCCCceeEEEEEEeCCCEEEE
Confidence 469999999997422 21233788899999999988
No 14
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=39.55 E-value=9.5 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.7
Q ss_pred CcEEEEEccccccCCCccceEE
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVI 77 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV 77 (170)
||.|++.-..| ++.+|||+
T Consensus 50 GD~V~Vel~py---d~~kgrIi 68 (71)
T d1hr0w_ 50 GDRVVVEITPY---DPTRGRIV 68 (71)
T ss_dssp TCEEEEECCTT---CTTCCEEC
T ss_pred CCEEEEEECcc---CCCcEEEE
Confidence 55555554432 34445443
No 15
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.33 E-value=16 Score=25.69 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=13.8
Q ss_pred CcEEEEEccccccCCCccceEEEEec
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCS 81 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~ 81 (170)
||++.-+.... .+++.||+++|..
T Consensus 112 gDil~~d~~LP--~~l~~GDlLai~~ 135 (181)
T d1hkva1 112 GDIIVRDTWVP--DDIRPGDLVAVAA 135 (181)
T ss_dssp TCEEEEEEEEE--TTCCTTCEEEESC
T ss_pred ccEeeccccCc--ccCCCcCEEEEec
Confidence 66665554331 2566777777764
No 16
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.77 E-value=14 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=16.8
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
+|.+.-+... .+++.||+++|..-
T Consensus 122 ~D~i~~~~~l---P~l~vGD~L~f~~~ 145 (177)
T d7odca1 122 LDRIVERCNL---PEMHVGDWMLFENM 145 (177)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEECSC
T ss_pred CCEEeecccC---CcccccCEEEEeCC
Confidence 7876544332 27899999999763
No 17
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Probab=34.33 E-value=15 Score=25.34 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=16.3
Q ss_pred CcEEEEEccccccCCCccceEEEEecC
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSP 82 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p 82 (170)
+|.+.-+... .+++.||.++|..-
T Consensus 110 ~D~i~~~~~l---Pel~vGD~L~~~n~ 133 (169)
T d1f3ta1 110 LDQIVERYYL---PEMQVGEWLLFEDM 133 (169)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEECSC
T ss_pred cceeeeeeec---ccccCCCEEEEeCC
Confidence 7877654332 27888898888763
No 18
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=31.37 E-value=28 Score=22.02 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=35.1
Q ss_pred CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEE
Q 030869 56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWV 119 (170)
Q Consensus 56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v 119 (170)
..++.++.-......++-||.|.+.++.. .+.-|+.+...+ .+++|.+|+
T Consensus 36 ~~~v~inp~dA~~~Gi~dGd~V~v~s~~G---~i~~~~~v~~~~-----------~v~~G~v~~ 85 (120)
T d1ogya1 36 GAVCFMHPEDARSRGLNRGSEVRVISRRG---EIRTRLETRGRN-----------RMPRGVVFV 85 (120)
T ss_dssp SCEEECCHHHHHHTTCCTTCEEEEECSSC---EEEEEEESSSSS-----------BCCTTEEEE
T ss_pred ceEEEecHHHHHHhCCCCCCEEEEECCCC---cEEEEEEeeccC-----------CCCCCEEEE
Confidence 56888887665557899999999998742 344455554443 367788887
No 19
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.16 E-value=27 Score=21.96 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.2
Q ss_pred CCCccceEEEEecCC
Q 030869 69 YKFSHGDVIVFCSPS 83 (170)
Q Consensus 69 ~~~~rGDiV~f~~p~ 83 (170)
..++.||+|+|.--.
T Consensus 83 ~~Lk~GD~~~F~~~~ 97 (117)
T d1wida_ 83 KNLRAGDVVSFSRSN 97 (117)
T ss_dssp TTCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEEe
Confidence 678999999997543
No 20
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=28.24 E-value=9.4 Score=22.77 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=5.8
Q ss_pred CCccceEEEEe
Q 030869 70 KFSHGDVIVFC 80 (170)
Q Consensus 70 ~~~rGDiV~f~ 80 (170)
.+..||.|.+.
T Consensus 45 ~i~~GD~V~Ve 55 (71)
T d1ah9a_ 45 RILTGDKVTVE 55 (71)
T ss_dssp CCCTTCEECCE
T ss_pred EecCCCEEEEE
Confidence 34555555554
No 21
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=25.64 E-value=42 Score=22.17 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=35.3
Q ss_pred CccceEEEEec----CCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCC
Q 030869 71 FSHGDVIVFCS----PSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 140 (170)
Q Consensus 71 ~~rGDiV~f~~----p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~ 140 (170)
...||+|+... |.. ...+++=|+=----.+. ..+.....--+|.+-++.++ .+..-+|-+|||+.+.
T Consensus 47 a~vGD~IvvsVk~~~~~~-k~~v~~AvIVrtkk~~~-R~dG~~i~FddNa~VLi~~~-~~p~GTRI~GpV~~El 117 (132)
T d1vqok1 47 AGLGDKITVSVTKGTPEM-RRQVLEAVVVRQRKPIR-RPDGTRVKFEDNAAVIVDEN-EDPRGTELKGPIAREV 117 (132)
T ss_dssp ECTTCEEEEEEEEECTTT-TTCEEEEEEEECSSCEE-CTTSCEEEESSCEEEEECTT-SCBSSSCBCSCBCHHH
T ss_pred cccceEEEEEEeecCCCc-ccceEEEEEEEecCcEE-CCCCCEEEcCCCEEEEECCC-CCEeeeEEeccHhHHH
Confidence 56899998754 222 12233332211100000 11223444555666666444 5889999999999764
No 22
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.61 E-value=66 Score=18.24 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.5
Q ss_pred CCCccceEEEEecCC
Q 030869 69 YKFSHGDVIVFCSPS 83 (170)
Q Consensus 69 ~~~~rGDiV~f~~p~ 83 (170)
.+++.||+|....+.
T Consensus 31 g~~~~Gd~V~v~d~~ 45 (72)
T d2as0a1 31 GDIKPGDIVEVYTRG 45 (72)
T ss_dssp SCCCTTCEEEEEETT
T ss_pred CCcCCCcEEEEEeCC
Confidence 467888888887654
No 23
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.20 E-value=82 Score=18.44 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=31.8
Q ss_pred CCccceEEEEecCCCCCCceEEEEEEeCCC-eEec--cCCCCeEEccCCeEEEe
Q 030869 70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGD-WIGT--PMTNDVVKVPNGHCWVE 120 (170)
Q Consensus 70 ~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD-~v~~--~~~~~~~~vp~g~~~v~ 120 (170)
.++.||+++...+.+ +.++=-+|..+.++ ++.+ -+......|+...++.+
T Consensus 25 ~~~~G~~~~a~~~~d-~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l 77 (97)
T d2diqa1 25 TVHVGDIVAAPLPTN-GSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 77 (97)
T ss_dssp CCCTTCEEEECCTTT-CSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC
T ss_pred CCCCCCEEEEEECCC-CeEEEEEEEEECCCCEEEEEEEeeCCEEEEeHHHhhcc
Confidence 678999999886543 56777777777554 4554 23344455666666554
Done!