BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030872
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 123/165 (74%), Gaps = 2/165 (1%)
Query: 6 GGKGGGVGGG-GKTSLKS-IPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDG 63
GGKG + GK+S KS + ASL GKDD++AKSKRGRKVQFN GL E + T S S G
Sbjct: 5 GGKGFSLNSNLGKSSTKSPLEASLTGKDDSAAKSKRGRKVQFNNGGLPEARLTSSLMSGG 64
Query: 64 KFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILE 123
K + KG L+KGGKG +V NG K +V K PLELR+EQELPKNAKC+MDCEAA IL+
Sbjct: 65 KTDIPIAKGDLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKCMMDCEAALILK 124
Query: 124 GIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
GIQEQM +LS DPTIKIP+SF+KGL YA++ + + +PQ+V+ + +
Sbjct: 125 GIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLE 169
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 121/170 (71%), Gaps = 27/170 (15%)
Query: 1 MEKGGGGKGGGVGGGG-KTSLKSI-PASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
MEKGG KG + G G K+SLKSI PAS GKDD SAKSKRG+KVQFN++G
Sbjct: 1 MEKGG--KGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQG--------- 49
Query: 59 SKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEA 118
++KGGKGDKV+NG K+S KE PLEL++EQ+LPKNAKCLMDCEA
Sbjct: 50 --------------NMSKGGKGDKVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEA 95
Query: 119 AHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
A +L+GIQEQM LLS DPTIK+PVSFD+ L +A+T + FTNPQ+V+ + +
Sbjct: 96 AQVLQGIQEQMVLLSRDPTIKLPVSFDRALQHARTGARFTNPQSVRRILE 145
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 107/158 (67%), Gaps = 15/158 (9%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + +
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE 163
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 107/158 (67%), Gaps = 15/158 (9%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + +
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE 163
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 23/132 (17%)
Query: 37 SKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEAL 96
S GRK+ F +EG L+KGGKG K+ANG K + KE
Sbjct: 31 SNNGRKIHFESEG-----------------------NLSKGGKGGKIANGGKSPMTKEPP 67
Query: 97 PLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSH 156
PLEL++E ELP+NAK LMDCEAA IL+GIQ+QM LLS DPTIK+PVSFDKGL YAK +H
Sbjct: 68 PLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAKNGAH 127
Query: 157 FTNPQAVKGLFQ 168
+TNPQ+V+ + +
Sbjct: 128 YTNPQSVRRVLE 139
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 106/171 (61%), Gaps = 23/171 (13%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G SL GKDD + KS +GR+VQF+T+G
Sbjct: 1 MEKGGKGASLFSKGGLG------------SLKGKDDIATKSAKGRRVQFSTDGP-----L 43
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
F S T+ GG KGG GD VA G K S K++ P + RV+Q+LP+N KCLMDC
Sbjct: 44 FESGVSSNSATSLKSGG--KGGMGDNVAKGGKNSQSKDSHPSDYRVDQKLPENIKCLMDC 101
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
EA IL+GIQE+M +LS D T+K+P+SFDKGL YAK++S + + Q+++ +
Sbjct: 102 EAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKYLDLQSIRHIL 152
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 28/165 (16%)
Query: 6 GGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKF 65
GGKGG + G L GKDD++ KS + RKVQF +EGL F S+S+G
Sbjct: 5 GGKGGSLLSKG---------GLKGKDDSATKSAKARKVQF-SEGL------FESRSNGP- 47
Query: 66 ETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGI 125
T GGKGDKVANG K S K+ E RV+QELP+N KCLMDCEAA +L+GI
Sbjct: 48 ---------TSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGI 98
Query: 126 QEQMALLSADPTIKIPVSFDKGL--LYAKTHSHFTNPQAVKGLFQ 168
Q+QM LS DP+IK+P SFDKGL + + S ++NP++V+ +
Sbjct: 99 QDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 143
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 19/140 (13%)
Query: 31 DDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVS 90
DD++ KS + RKVQF +EGL F S+S+G T GGKGDKVANG K S
Sbjct: 43 DDSATKSAKARKVQF-SEGL------FESRSNGP----------TSGGKGDKVANGGKSS 85
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL-- 148
K+ E RV+QELP+N KCLMDCEAA +L+GIQ+QM LS DP+IK+P SFDKGL
Sbjct: 86 AAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYY 145
Query: 149 LYAKTHSHFTNPQAVKGLFQ 168
+ + S ++NP++V+ +
Sbjct: 146 AKSSSSSKYSNPESVRHTLE 165
>gi|51970310|dbj|BAD43847.1| unnamed protein product [Arabidopsis thaliana]
Length = 158
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 18/160 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 59
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 60 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQYP 170
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +YP
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEYP 149
>gi|51971721|dbj|BAD44525.1| unnamed protein product [Arabidopsis thaliana]
Length = 155
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 18/160 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 3 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 56
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 57 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 106
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQYP 170
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +YP
Sbjct: 107 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEYP 146
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 94/157 (59%), Gaps = 16/157 (10%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK-FETTYGK 71
G G K+SLKS GGKD +S K K+GRK+ F+ + SD + F+++ K
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFDQRTPPANYKILNVSSDQQPFQSSAAK 62
Query: 72 GGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMAL 131
G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 63 CG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVG 110
Query: 132 LSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 111 LSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 147
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSSAA 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 62 KCG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 147
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 13/158 (8%)
Query: 13 GGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYG 70
G G K+SLKS L GGKD NS K K+GRK+ F+ +G + +G +
Sbjct: 6 GKGLKSSLKSKDGFLVAGGKDGNSTKLKKGRKIHFD-QGTPPPNYKIL---NGSSDPLPF 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
+ K GKGDK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ +
Sbjct: 62 QSSAAKVGKGDKPTKSSKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLV 114
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y + H++NPQ+V+ + +
Sbjct: 115 GLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVLE 152
>gi|28188685|gb|AAN46268.1| unknown protein [Arabidopsis thaliana]
gi|28188693|gb|AAN46272.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 21/142 (14%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + KGGKGDK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 107 ALAYVESCVHYTNPQSVRKVLE 128
>gi|28188691|gb|AAN46271.1| unknown protein [Arabidopsis thaliana]
gi|28188695|gb|AAN46273.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 21/142 (14%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + KGGKGDK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 107 SLAYVESCVHYTNPQSVRKVLE 128
>gi|28188699|gb|AAN46275.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 19/141 (13%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGG KGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILSGSSDQQPFQSSAAKGG-----KGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 108 LAYVESCVHYTNPQSVRKVLE 128
>gi|28188681|gb|AAN46266.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 19/141 (13%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGG KGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSSAAKGG-----KGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 108 LAYVESCVHYTNPQSVRKVLE 128
>gi|28188687|gb|AAN46269.1| unknown protein [Arabidopsis thaliana]
gi|28188689|gb|AAN46270.1| unknown protein [Arabidopsis thaliana]
gi|28188697|gb|AAN46274.1| unknown protein [Arabidopsis thaliana]
gi|28188701|gb|AAN46276.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 19/141 (13%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGG KGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSSAAKGG-----KGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 108 LAYVESCVHYTNPQSVRKVLE 128
>gi|28188683|gb|AAN46267.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 21/142 (14%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + K GK DK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKCGKSDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQ 168
L Y ++ H+TNPQ+V+ + +
Sbjct: 107 ALAYVESCVHYTNPQSVRKVLE 128
>gi|28188703|gb|AAN46277.1| unknown protein [Arabidopsis lyrata]
gi|28188705|gb|AAN46278.1| unknown protein [Arabidopsis lyrata]
Length = 142
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 21/142 (14%)
Query: 28 GGKDDNSAKSKRGRKV-QFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD NS K K+G + S F S + +K GKGDK
Sbjct: 7 GGKDGNSTKLKKGTPPPNYKILNGSSDPLPFQSSA-------------SKVGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ + LS DP+IKIPVS+D+
Sbjct: 54 SKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQ 168
L Y + H++NPQ+V+ + +
Sbjct: 107 ALAYVDSCVHYSNPQSVRKVLE 128
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 12/135 (8%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGG-----LTKG----GKG---DKVANGAKVSVVK 93
++EG E SKS+GK + K G L+KG GK DK G+ V
Sbjct: 27 DSEGFVEELTPVHSKSNGKASSASLKTGGKASALSKGEASKGKAYSSDKGGKGSSSHAVP 86
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
EL++E ++P N++ LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K
Sbjct: 87 TKSDAELKLELDIPPNSRMLMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKD 146
Query: 154 HSHFTNPQAVKGLFQ 168
+HFT +VK +
Sbjct: 147 GNHFTTASSVKQAIE 161
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 47 TEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSV--VKEALP-LELRVE 103
T S GK + S G +++ G +KGGK G K S K A+ EL+++
Sbjct: 49 THSKSNGKASSDSLKTGGKGSSFSNGEGSKGGKAFSAGKGGKASASNAKPAMSDAELKLQ 108
Query: 104 QELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAV 163
++ N+K L +CE A +L+ I E MA+LS DP IKIP SFDK LYAK +HFT+ + V
Sbjct: 109 LDMSPNSKLLTNCEVAEMLQKIHEHMAILSEDPKIKIPESFDKAFLYAKEGNHFTSAKLV 168
Query: 164 KGLF 167
K +
Sbjct: 169 KEIL 172
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 18/181 (9%)
Query: 2 EKGGGGKGGGVGGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNT--EGLSEGKFTF 57
E+G G G S K +P ++ G NS+ + + ++ EG E
Sbjct: 3 ERGSRGFSAASKGKAIASKKDLPMNVFTGSLRQNSSANIPHVNIDSDSDSEGFVEELPRV 62
Query: 58 SSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKEALPLELRVEQEL 106
+SK++GK + K G KG K + A+VS +A EL++E ++
Sbjct: 63 NSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSDA---ELKLELDM 119
Query: 107 PKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK +
Sbjct: 120 PPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQV 179
Query: 167 F 167
Sbjct: 180 L 180
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLF 167
+ F+ Q+VK +
Sbjct: 160 NQFSTAQSVKQVL 172
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLF 167
+ F+ Q+VK +
Sbjct: 160 NQFSTAQSVKQVL 172
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 105 ELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK
Sbjct: 7 DMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVK 66
Query: 165 GLF 167
+
Sbjct: 67 QVL 69
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 113 LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K +HFT +VK
Sbjct: 2 LMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVK 53
>gi|356558007|ref|XP_003547301.1| PREDICTED: uncharacterized protein LOC100775535 [Glycine max]
Length = 174
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 75/133 (56%), Gaps = 23/133 (17%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G S GKDD++ KS + R VQF+++G S
Sbjct: 1 MEKGGKGASLFSKGGLG------------SQKGKDDSATKSAKKRMVQFSSDGPSFESGV 48
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
SS + + KGGKGD VANG K S K++ + RV+Q+LP+N KCL+DC
Sbjct: 49 SSS-------SLPSQKSGGKGGKGDNVANGGKSSQSKDSHSSDHRVDQKLPENIKCLIDC 101
Query: 117 EAAHILEGIQEQM 129
EA IL+GIQE+M
Sbjct: 102 EAVDILQGIQERM 114
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQYP 170
NP AV+ + +YP
Sbjct: 70 NPDAVRQVREYP 81
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S + NP AV+ +
Sbjct: 21 AKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQV 77
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ +E K AKCLM+CE A IL+ EQ+ LS DPT +I F+K + Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
N AV+ +
Sbjct: 70 NQDAVRQV 77
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 49 GLSEGKFTFSSKSDGKFETTYGKG------GLTKGGKGDKVANGAKVSVVKEALPLELRV 102
G E FTF K E + L G++ N A++ + E L
Sbjct: 113 GREEAIFTFVVSRKKKPEAEQKRTFRFRFPSLVIAMSGEEEENAAELKIGDEFL------ 166
Query: 103 EQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQA 162
AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S + NP A
Sbjct: 167 ------KAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYKNPDA 220
Query: 163 VKGL 166
V+ +
Sbjct: 221 VRQV 224
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP +I F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA-DPTIKIPVSFDKGLLYAKTHSHF 157
EL++ +E K AKCLM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSLQYVKRFSRY 69
Query: 158 TNPQAVK 164
NP AV+
Sbjct: 70 KNPDAVR 76
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + IL+ EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVKGL 166
+ NP AV+ +
Sbjct: 70 YKNPDAVRQV 79
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQILQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVK 164
+ NP AV+
Sbjct: 70 YKNPDAVR 77
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQM---ALLSADPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AKCLM+CE A ILE EQ+ A +DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEKSLQYVKRFS 69
Query: 156 HFTNPQAVKGL 166
+ NP AV+ +
Sbjct: 70 RYKNPDAVRQV 80
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADP-----TIKIPVS-------FDK 146
EL++ E K AKCLM+CE + ILE EQ+ +S DP T+K+ + F+K
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQVSEDPMNQRFTVKLAIKRYRSCWVFEK 69
Query: 147 GLLYAKTHSHFTNPQAVKGL 166
L Y K S + NP AV+ L
Sbjct: 70 SLQYVKRFSRYKNPDAVRQL 89
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
AKCLM+ E A +L+ EQ+ L+ DP+ +I F++ L Y + S + NP AVK +
Sbjct: 26 AKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVRRFSRYQNPDAVKQV 82
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S D ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
V KE EL++ E K AKCLM+CE A I E Q+ +S DP ++ F+K Y
Sbjct: 3 VEKEENAAELKIGDEFLK-AKCLMNCEVALIPEHKYXQLQQISDDPMNQVSQVFEKSQQY 61
Query: 151 AKTHSHFTNPQAVKG 165
K S + NP AV+
Sbjct: 62 VKRFSRYKNPDAVRD 76
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA---DPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AK LM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKSLMNCEVAIILEHRYEQLQQMSDGGGDPSSQMSQVFEKSLGYVKRFS 69
Query: 156 HFTNPQAVK 164
+ NP AV+
Sbjct: 70 RYKNPDAVR 78
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 111 KCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
KCLM+ E A IL+ + +S DP+ ++ F+K Y K S + NP+AV+ +
Sbjct: 21 KCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYVKRFSRYKNPEAVQQV 76
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
M+CE + ILE EQ+ S D ++ F+K L Y K S + NP AV+ +
Sbjct: 1 MNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQV 53
>gi|291545061|emb|CBL18170.1| yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF
N-terminal region [Ruminococcus champanellensis 18P13]
Length = 509
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 56 TFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLM- 114
T + +G F + G G++KGG GD +A G S+V + +P P NA C+
Sbjct: 418 TIVATPEGAFVNSTGNSGMSKGGSGDVLA-GMLASLVAQGIP---------PTNAACMAV 467
Query: 115 -------DCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHS 155
DC A H+ E A+L D ++P F K L + HS
Sbjct: 468 FLHGKAGDCAAEHLSE-----QAMLPTDLIGELPGLFLK--LEQRRHS 508
>gi|333984640|ref|YP_004513850.1| UvrABC system protein B [Methylomonas methanica MC09]
gi|333808681|gb|AEG01351.1| UvrABC system protein B [Methylomonas methanica MC09]
Length = 697
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 33 NSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA---KV 89
+ + +R +++ FN E + K F S +D + G GG G + KVA A K
Sbjct: 594 DETERRRAKQIAFNKEHHIQPKTIFKSVTDILEISIPGSGGSIAGARA-KVAEPASEYKA 652
Query: 90 SVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSAD 135
K+A ++E+++ ++AK L EAAH +++Q+ LL A+
Sbjct: 653 MTPKQAAKTLKQLEEKMYRHAKNLEFEEAAH----VRDQIKLLQAE 694
>gi|345310581|ref|XP_001518993.2| PREDICTED: mitochondrial import receptor subunit TOM70-like
[Ornithorhynchus anatinus]
Length = 626
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 206 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKDKYKNR 265
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 266 EPLMPSPQFIKSYF 279
>gi|395518911|ref|XP_003763599.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Sarcophilus
harrisii]
Length = 554
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 134 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 193
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 194 EPLMPSPQFIKSYF 207
>gi|116206310|ref|XP_001228964.1| hypothetical protein CHGG_02448 [Chaetomium globosum CBS 148.51]
gi|88183045|gb|EAQ90513.1| hypothetical protein CHGG_02448 [Chaetomium globosum CBS 148.51]
Length = 3887
Score = 35.8 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 2 EKGGGGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKS 61
EK G+ G G L A+ GG D A + Q TE +EG S+ +
Sbjct: 3258 EKARRGQAAGNKPAGSPQLTKKDAAAGGSDSRPATANGDAAGQAKTEPKAEGDVA-STPT 3316
Query: 62 DGKFETTYGKGGLTKGGKGDKVANGAK--VSVVKEALPL-----ELRVEQELPKNAKCLM 114
TT G GG K + +SV+K A PL E V+Q + K+ KC
Sbjct: 3317 GPPSATTGPAQGEQTGGSQKKPWELTEEIMSVLKTAFPLLALSMETMVDQ-IQKHFKCPP 3375
Query: 115 DCEAAHILEG-IQEQMALLSADPT-----IKIPVSFDKGLL-YAKTHSHFTNPQAVKGLF 167
D +A ++ + + +A +S PT +K+P + + + +A+T P ++G F
Sbjct: 3376 DEDAYRLIVALLNDGLAYVSRMPTSYARDVKLPPATENNITRFAET----ILPSHIRGTF 3431
Query: 168 Q 168
+
Sbjct: 3432 E 3432
>gi|67972314|dbj|BAE02499.1| unnamed protein product [Macaca fascicularis]
Length = 590
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 170 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 229
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 230 EPLMPSPQFIKSYF 243
>gi|40788338|dbj|BAA34439.2| KIAA0719 protein [Homo sapiens]
Length = 624
Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 204 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 263
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 264 EPLMPSPQFIKSYF 277
>gi|403306109|ref|XP_003943587.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Saimiri
boliviensis boliviensis]
Length = 608
Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 188 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 247
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 248 EPLMPSPQFIKSYF 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,928,590,020
Number of Sequences: 23463169
Number of extensions: 124642034
Number of successful extensions: 968858
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 877
Number of HSP's that attempted gapping in prelim test: 945207
Number of HSP's gapped (non-prelim): 20865
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 71 (32.0 bits)