BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030872
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens
GN=TOMM70A PE=1 SV=1
Length = 608
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 188 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 247
Query: 154 HSHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 248 EPLMPSPQFIKSYF 261
>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus
GN=Tomm70a PE=1 SV=1
Length = 610
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 191 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 250
Query: 155 SHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 251 PLMPSPQFIKSYF 263
>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus
GN=Tomm70a PE=1 SV=2
Length = 611
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 192 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 251
Query: 155 SHFTNPQAVKGLF 167
+PQ +K F
Sbjct: 252 PLMPSPQFIKSYF 264
>sp|Q6BMA8|GEP3_DEBHA Genetic interactor of prohibitins 3, mitochondrial OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=GEP3 PE=3 SV=2
Length = 593
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 10 GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQ------FNTEGLSEGKFTFSS-KSD 62
GGV G T +KS+ ++ N SK+ K++ N+ ++ + T S K +
Sbjct: 250 GGVNSGKSTVIKSLLYTMEKSKPNYLSSKQQTKLEKQQDRMINSNAVNRHQHTKSQRKVE 309
Query: 63 GKFETTYGKG-----GLTKG 77
KF+ TYG G G T+G
Sbjct: 310 QKFKMTYGPGTSYMPGFTRG 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,575,679
Number of Sequences: 539616
Number of extensions: 3068487
Number of successful extensions: 23756
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 19123
Number of HSP's gapped (non-prelim): 3426
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)