Query 030873
Match_columns 170
No_of_seqs 226 out of 1772
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 99.9 1.2E-23 2.7E-28 185.1 6.0 135 16-165 278-430 (493)
2 KOG0910 Thioredoxin-like prote 99.7 9.4E-17 2E-21 121.8 6.9 65 98-169 45-109 (150)
3 cd02954 DIM1 Dim1 family; Dim1 99.7 2.2E-16 4.9E-21 115.5 7.7 61 103-169 2-62 (114)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.6 6.2E-16 1.3E-20 113.0 7.9 67 96-168 10-76 (113)
5 PLN00410 U5 snRNP protein, DIM 99.6 5.8E-16 1.3E-20 117.3 7.3 67 97-169 5-71 (142)
6 KOG0907 Thioredoxin [Posttrans 99.6 6.5E-16 1.4E-20 111.7 6.9 60 104-168 8-67 (106)
7 PTZ00102 disulphide isomerase; 99.6 4.1E-16 8.9E-21 136.8 6.9 135 17-167 271-423 (477)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 1.8E-15 3.8E-20 107.0 7.7 60 101-168 6-65 (101)
9 cd02985 TRX_CDSP32 TRX family, 99.6 3.5E-15 7.6E-20 106.5 7.2 57 102-165 2-58 (103)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.6 4.5E-15 9.7E-20 105.2 7.6 61 101-168 6-66 (104)
11 PHA02278 thioredoxin-like prot 99.6 3.2E-15 7E-20 107.4 6.8 55 102-164 3-57 (103)
12 cd02986 DLP Dim1 family, Dim1- 99.6 4.6E-15 1E-19 108.3 7.6 61 103-169 2-62 (114)
13 cd02996 PDI_a_ERp44 PDIa famil 99.5 1.9E-14 4.1E-19 103.0 7.8 63 101-168 6-71 (108)
14 cd02948 TRX_NDPK TRX domain, T 99.5 2.7E-14 5.9E-19 101.6 7.8 56 100-162 4-59 (102)
15 COG3118 Thioredoxin domain-con 99.5 1.2E-14 2.7E-19 120.8 6.9 66 97-168 25-90 (304)
16 cd02962 TMX2 TMX2 family; comp 99.5 4.2E-14 9E-19 108.4 9.1 63 101-168 33-95 (152)
17 cd02956 ybbN ybbN protein fami 99.5 2.6E-14 5.5E-19 99.7 6.6 58 105-168 2-59 (96)
18 KOG0908 Thioredoxin-like prote 99.5 2.2E-14 4.7E-19 116.7 5.9 66 96-168 2-67 (288)
19 cd02989 Phd_like_TxnDC9 Phosdu 99.5 7E-14 1.5E-18 101.8 7.7 64 96-168 5-68 (113)
20 cd02999 PDI_a_ERp44_like PDIa 99.5 4.7E-14 1E-18 100.4 6.6 57 105-168 8-65 (100)
21 PF00085 Thioredoxin: Thioredo 99.5 5.4E-14 1.2E-18 98.2 6.5 62 100-168 3-64 (103)
22 cd03002 PDI_a_MPD1_like PDI fa 99.5 8.3E-14 1.8E-18 99.0 6.9 60 101-167 5-66 (109)
23 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 1.2E-13 2.6E-18 96.9 7.5 60 101-165 5-64 (104)
24 cd03005 PDI_a_ERp46 PDIa famil 99.5 1.2E-13 2.7E-18 96.8 7.5 62 101-168 5-66 (102)
25 cd02994 PDI_a_TMX PDIa family, 99.5 1.4E-13 3E-18 97.0 7.2 59 101-168 6-64 (101)
26 TIGR01130 ER_PDI_fam protein d 99.5 6.9E-14 1.5E-18 121.4 6.9 136 17-165 259-411 (462)
27 cd03065 PDI_b_Calsequestrin_N 99.5 1.9E-13 4E-18 100.9 7.1 61 101-168 14-80 (120)
28 KOG0190 Protein disulfide isom 99.5 5.3E-14 1.1E-18 124.5 4.9 66 98-168 27-92 (493)
29 cd02957 Phd_like Phosducin (Ph 99.5 2.1E-13 4.5E-18 98.8 7.1 64 97-168 6-69 (113)
30 cd02963 TRX_DnaJ TRX domain, D 99.4 1.6E-13 3.4E-18 99.3 6.0 64 101-168 9-72 (111)
31 cd02993 PDI_a_APS_reductase PD 99.4 3.6E-13 7.9E-18 96.8 7.8 59 101-163 6-64 (109)
32 cd02992 PDI_a_QSOX PDIa family 99.4 4E-13 8.7E-18 97.8 7.8 57 101-160 6-62 (114)
33 PTZ00051 thioredoxin; Provisio 99.4 4.3E-13 9.4E-18 93.7 7.7 63 97-168 2-64 (98)
34 cd03001 PDI_a_P5 PDIa family, 99.4 5.4E-13 1.2E-17 93.6 7.3 61 101-168 5-65 (103)
35 PRK09381 trxA thioredoxin; Pro 99.4 9.1E-13 2E-17 94.1 7.6 64 97-168 5-68 (109)
36 cd03000 PDI_a_TMX3 PDIa family 99.4 6E-13 1.3E-17 94.6 6.1 60 103-168 6-65 (104)
37 cd02984 TRX_PICOT TRX domain, 99.4 1.2E-12 2.5E-17 91.2 7.4 61 102-168 1-61 (97)
38 PTZ00443 Thioredoxin domain-co 99.4 7.8E-13 1.7E-17 107.2 7.2 64 101-168 35-99 (224)
39 cd02997 PDI_a_PDIR PDIa family 99.4 1.4E-12 3E-17 91.5 7.1 57 101-163 5-61 (104)
40 cd02987 Phd_like_Phd Phosducin 99.4 1.8E-12 4E-17 101.3 8.3 64 95-164 62-125 (175)
41 TIGR01126 pdi_dom protein disu 99.4 1.2E-12 2.6E-17 91.3 6.3 62 101-168 1-62 (102)
42 PRK10996 thioredoxin 2; Provis 99.4 2E-12 4.3E-17 97.3 7.6 60 101-168 40-99 (139)
43 cd02952 TRP14_like Human TRX-r 99.3 3E-12 6.5E-17 94.4 7.3 59 100-164 6-71 (119)
44 cd02998 PDI_a_ERp38 PDIa famil 99.3 2.8E-12 6.1E-17 89.8 6.7 63 101-168 5-68 (105)
45 cd02950 TxlA TRX-like protein 99.3 3.4E-12 7.4E-17 96.4 6.8 53 103-163 10-62 (142)
46 cd02965 HyaE HyaE family; HyaE 99.3 3.5E-12 7.7E-17 92.9 5.9 60 101-168 15-76 (111)
47 cd02953 DsbDgamma DsbD gamma f 99.3 5.7E-12 1.2E-16 89.3 6.6 52 104-163 2-56 (104)
48 TIGR00424 APS_reduc 5'-adenyly 99.3 1.2E-11 2.6E-16 109.5 10.0 63 98-164 353-415 (463)
49 TIGR01068 thioredoxin thioredo 99.3 1.3E-11 2.9E-16 85.5 7.0 59 102-167 2-60 (101)
50 PLN02309 5'-adenylylsulfate re 99.3 2E-11 4.3E-16 108.0 9.4 67 96-167 346-413 (457)
51 cd02961 PDI_a_family Protein D 99.3 1.8E-11 3.9E-16 84.1 7.1 62 101-168 3-64 (101)
52 cd02959 ERp19 Endoplasmic reti 99.3 1.1E-11 2.3E-16 90.8 6.3 53 105-160 7-59 (117)
53 TIGR01130 ER_PDI_fam protein d 99.3 1.3E-11 2.7E-16 107.3 7.5 63 101-168 6-68 (462)
54 PTZ00102 disulphide isomerase; 99.2 1.6E-11 3.5E-16 107.8 7.6 64 100-168 36-99 (477)
55 cd02988 Phd_like_VIAF Phosduci 99.2 3.8E-11 8.2E-16 95.2 7.4 61 96-163 83-143 (192)
56 cd02949 TRX_NTR TRX domain, no 99.2 5.1E-11 1.1E-15 83.7 7.2 56 106-168 5-60 (97)
57 TIGR01295 PedC_BrcD bacterioci 99.2 5.9E-11 1.3E-15 87.6 7.3 54 101-164 11-64 (122)
58 cd02975 PfPDO_like_N Pyrococcu 99.2 4.7E-11 1E-15 86.8 6.0 55 105-168 14-68 (113)
59 cd02951 SoxW SoxW family; SoxW 99.2 7.2E-11 1.6E-15 86.4 6.7 53 104-164 4-60 (125)
60 cd03008 TryX_like_RdCVF Trypar 99.2 4.6E-11 1E-15 91.0 5.4 49 116-165 24-77 (146)
61 KOG4277 Uncharacterized conser 99.1 4.1E-11 8.9E-16 100.4 3.2 52 116-168 42-93 (468)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.1 1.8E-10 3.9E-15 84.6 5.5 50 101-161 6-60 (116)
63 PF13905 Thioredoxin_8: Thiore 99.1 3.9E-10 8.4E-15 78.3 6.7 46 117-164 1-46 (95)
64 cd02964 TryX_like_family Trypa 99.1 2.4E-10 5.1E-15 84.6 5.5 48 116-164 16-63 (132)
65 KOG0191 Thioredoxin/protein di 99.0 2E-10 4.3E-15 99.4 4.0 139 17-167 71-210 (383)
66 cd02947 TRX_family TRX family; 99.0 9E-10 1.9E-14 74.0 6.2 54 105-167 2-55 (93)
67 cd02982 PDI_b'_family Protein 99.0 6.7E-10 1.5E-14 78.0 5.6 49 116-168 11-59 (103)
68 cd03009 TryX_like_TryX_NRX Try 99.0 8.5E-10 1.9E-14 81.1 6.2 48 116-164 17-64 (131)
69 PRK00293 dipZ thiol:disulfide 99.0 8.8E-10 1.9E-14 100.1 7.4 62 97-162 454-518 (571)
70 cd02955 SSP411 TRX domain, SSP 99.0 1.6E-09 3.5E-14 80.3 7.0 58 103-168 5-65 (124)
71 PTZ00062 glutaredoxin; Provisi 99.0 1.5E-09 3.3E-14 86.9 7.0 53 101-160 4-56 (204)
72 cd02967 mauD Methylamine utili 99.0 9E-10 2E-14 78.7 5.0 39 117-158 21-59 (114)
73 KOG0912 Thiol-disulfide isomer 99.0 5.7E-10 1.2E-14 93.4 4.2 63 102-169 2-66 (375)
74 PF13899 Thioredoxin_7: Thiore 98.9 7.9E-10 1.7E-14 75.6 3.9 56 105-164 5-63 (82)
75 KOG1731 FAD-dependent sulfhydr 98.9 3.2E-10 7E-15 101.3 1.3 63 95-161 39-101 (606)
76 TIGR02738 TrbB type-F conjugat 98.9 2.2E-09 4.8E-14 82.3 5.5 40 116-160 49-88 (153)
77 TIGR00411 redox_disulf_1 small 98.9 2.7E-09 5.9E-14 71.8 5.2 45 120-168 2-46 (82)
78 PRK15412 thiol:disulfide inter 98.9 2.9E-09 6.3E-14 83.4 4.9 39 116-160 67-105 (185)
79 PHA02125 thioredoxin-like prot 98.8 3.4E-09 7.4E-14 71.4 4.2 38 121-168 2-39 (75)
80 cd03010 TlpA_like_DsbE TlpA-li 98.8 6.2E-09 1.3E-13 76.0 5.1 40 116-160 24-63 (127)
81 TIGR00412 redox_disulf_2 small 98.8 6.6E-09 1.4E-13 70.3 4.8 36 121-159 2-37 (76)
82 KOG0191 Thioredoxin/protein di 98.8 3.9E-09 8.5E-14 91.3 4.3 59 103-168 36-94 (383)
83 cd02973 TRX_GRX_like Thioredox 98.8 9.5E-09 2.1E-13 67.1 5.0 43 121-168 3-45 (67)
84 PTZ00056 glutathione peroxidas 98.8 1.4E-08 3.1E-13 80.7 5.7 43 116-160 38-80 (199)
85 PF08534 Redoxin: Redoxin; In 98.7 1.4E-08 3.1E-13 75.6 4.9 47 116-165 27-74 (146)
86 cd00340 GSH_Peroxidase Glutath 98.7 1.5E-08 3.3E-13 76.7 5.0 42 116-160 21-62 (152)
87 cd02960 AGR Anterior Gradient 98.7 4E-08 8.6E-13 73.5 6.8 54 104-160 10-66 (130)
88 cd03012 TlpA_like_DipZ_like Tl 98.7 3.4E-08 7.4E-13 72.3 6.0 43 116-160 22-64 (126)
89 PRK14018 trifunctional thiored 98.7 2.6E-08 5.7E-13 89.5 6.3 43 116-160 55-97 (521)
90 TIGR00385 dsbE periplasmic pro 98.7 2.6E-08 5.7E-13 77.1 5.0 39 116-160 62-100 (173)
91 cd02966 TlpA_like_family TlpA- 98.7 4.3E-08 9.3E-13 68.2 5.2 45 116-163 18-62 (116)
92 TIGR02740 TraF-like TraF-like 98.7 6.5E-08 1.4E-12 80.5 7.0 40 116-160 165-204 (271)
93 TIGR02540 gpx7 putative glutat 98.7 5E-08 1.1E-12 73.9 5.8 43 116-160 21-63 (153)
94 TIGR02187 GlrX_arch Glutaredox 98.7 7.7E-08 1.7E-12 77.1 7.1 48 116-168 132-179 (215)
95 PLN02399 phospholipid hydroper 98.6 6.9E-08 1.5E-12 78.9 5.9 43 116-160 98-140 (236)
96 PRK03147 thiol-disulfide oxido 98.6 8.1E-08 1.8E-12 73.3 5.5 45 116-163 60-104 (173)
97 COG0526 TrxA Thiol-disulfide i 98.6 9.2E-08 2E-12 65.5 5.2 41 117-160 32-72 (127)
98 PLN02919 haloacid dehalogenase 98.6 6.8E-08 1.5E-12 93.3 5.8 42 116-159 419-460 (1057)
99 PRK13728 conjugal transfer pro 98.6 8.9E-08 1.9E-12 75.4 5.3 35 121-160 73-107 (181)
100 PLN02412 probable glutathione 98.6 9.4E-08 2E-12 73.8 5.4 43 116-160 28-70 (167)
101 TIGR02661 MauD methylamine deh 98.5 1.2E-07 2.7E-12 74.5 4.7 39 116-157 73-111 (189)
102 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 1.5E-07 3.2E-12 68.0 3.8 31 116-146 19-49 (123)
103 KOG2501 Thioredoxin, nucleored 98.5 1.2E-07 2.6E-12 72.8 3.4 45 116-160 32-76 (157)
104 TIGR02187 GlrX_arch Glutaredox 98.5 2.4E-07 5.1E-12 74.2 5.3 49 117-168 19-70 (215)
105 PF13098 Thioredoxin_2: Thiore 98.4 1.4E-07 3E-12 67.1 2.8 43 115-160 3-48 (112)
106 PTZ00256 glutathione peroxidas 98.4 4.3E-07 9.4E-12 71.0 5.6 43 116-160 39-82 (183)
107 TIGR01626 ytfJ_HI0045 conserve 98.4 2.2E-07 4.7E-12 73.4 3.4 29 116-144 58-86 (184)
108 cd03014 PRX_Atyp2cys Peroxired 98.4 5.3E-07 1.1E-11 67.0 4.8 44 116-164 25-69 (143)
109 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 7.3E-07 1.6E-11 64.1 5.0 49 116-167 24-73 (124)
110 cd02968 SCO SCO (an acronym fo 98.3 7.5E-07 1.6E-11 65.7 5.0 45 116-160 21-67 (142)
111 PRK00522 tpx lipid hydroperoxi 98.3 1E-06 2.2E-11 68.0 4.9 44 116-164 43-87 (167)
112 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 1.4E-06 3E-11 60.9 5.0 48 116-168 11-58 (89)
113 cd02970 PRX_like2 Peroxiredoxi 98.3 1.3E-06 2.9E-11 64.6 5.1 47 116-165 23-69 (149)
114 PRK10606 btuE putative glutath 98.3 1.5E-06 3.3E-11 68.5 5.6 42 116-160 24-65 (183)
115 COG4232 Thiol:disulfide interc 98.3 1.3E-06 2.8E-11 78.9 5.6 64 101-168 460-524 (569)
116 cd02969 PRX_like1 Peroxiredoxi 98.3 2.2E-06 4.7E-11 65.9 6.1 43 116-160 24-66 (171)
117 cd03018 PRX_AhpE_like Peroxire 98.3 1.1E-06 2.5E-11 65.4 4.3 47 118-167 29-76 (149)
118 cd02958 UAS UAS family; UAS is 98.2 4E-06 8.8E-11 60.4 6.1 55 104-161 4-61 (114)
119 TIGR03137 AhpC peroxiredoxin. 98.1 2.8E-06 6.1E-11 66.7 4.2 43 116-160 30-73 (187)
120 cd03015 PRX_Typ2cys Peroxiredo 98.1 2.8E-06 6.1E-11 65.5 4.1 45 116-163 28-73 (173)
121 cd03017 PRX_BCP Peroxiredoxin 98.1 3.3E-06 7.2E-11 62.1 4.1 50 116-168 22-72 (140)
122 cd02971 PRX_family Peroxiredox 98.1 3.9E-06 8.4E-11 61.6 4.2 48 116-166 21-69 (140)
123 KOG0914 Thioredoxin-like prote 98.0 7.1E-06 1.5E-10 66.2 4.8 69 95-168 124-192 (265)
124 PRK09437 bcp thioredoxin-depen 98.0 5.7E-06 1.2E-10 62.3 3.7 50 116-168 29-79 (154)
125 cd01659 TRX_superfamily Thiore 98.0 1.1E-05 2.4E-10 49.0 4.3 41 121-166 1-41 (69)
126 smart00594 UAS UAS domain. 98.0 2E-05 4.3E-10 57.8 6.2 56 103-161 13-71 (122)
127 PF03190 Thioredox_DsbH: Prote 97.8 2.1E-05 4.5E-10 61.0 4.1 58 103-168 27-87 (163)
128 TIGR02200 GlrX_actino Glutared 97.8 2.8E-05 6.1E-10 51.3 3.4 24 121-144 2-25 (77)
129 PRK10382 alkyl hydroperoxide r 97.8 3.5E-05 7.6E-10 60.9 4.4 46 116-164 30-76 (187)
130 TIGR02180 GRX_euk Glutaredoxin 97.7 2.3E-05 5E-10 52.6 2.9 35 121-160 1-35 (84)
131 TIGR02196 GlrX_YruB Glutaredox 97.7 4.9E-05 1.1E-09 49.2 4.1 36 121-166 2-37 (74)
132 PF06110 DUF953: Eukaryotic pr 97.7 0.00021 4.5E-09 52.7 7.3 56 102-160 4-66 (119)
133 KOG3425 Uncharacterized conser 97.6 0.0003 6.5E-09 51.8 7.3 58 103-165 12-77 (128)
134 PRK13190 putative peroxiredoxi 97.6 7.9E-05 1.7E-09 59.3 4.0 43 116-160 26-69 (202)
135 PRK15000 peroxidase; Provision 97.6 9.6E-05 2.1E-09 58.8 4.4 43 116-160 33-76 (200)
136 KOG0911 Glutaredoxin-related p 97.5 4.3E-05 9.3E-10 61.7 1.7 61 98-169 4-64 (227)
137 PRK13599 putative peroxiredoxi 97.5 0.00011 2.4E-09 59.2 3.7 46 116-164 27-73 (215)
138 KOG0913 Thiol-disulfide isomer 97.5 2.8E-05 6E-10 63.3 0.0 61 99-168 27-87 (248)
139 cd03016 PRX_1cys Peroxiredoxin 97.5 0.00012 2.5E-09 58.3 3.6 42 119-163 28-69 (203)
140 PRK11200 grxA glutaredoxin 1; 97.4 0.0003 6.4E-09 48.0 4.3 38 121-163 3-40 (85)
141 PTZ00137 2-Cys peroxiredoxin; 97.3 0.00028 6E-09 58.6 4.4 43 116-160 97-140 (261)
142 PRK13191 putative peroxiredoxi 97.3 0.00022 4.8E-09 57.4 3.7 43 116-160 32-75 (215)
143 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0007 1.5E-08 49.8 5.9 41 116-160 4-44 (154)
144 PRK13189 peroxiredoxin; Provis 97.3 0.00031 6.7E-09 56.8 3.9 43 116-160 34-77 (222)
145 PTZ00253 tryparedoxin peroxida 97.2 0.00053 1.1E-08 54.2 4.3 43 116-160 35-78 (199)
146 PF02114 Phosducin: Phosducin; 97.0 0.0024 5.1E-08 53.2 6.7 62 96-163 126-187 (265)
147 PF14595 Thioredoxin_9: Thiore 97.0 0.0018 3.9E-08 48.2 5.3 46 116-166 40-85 (129)
148 cd02976 NrdH NrdH-redoxin (Nrd 96.9 0.0015 3.2E-08 42.0 3.9 34 121-164 2-35 (73)
149 PF02966 DIM1: Mitosis protein 96.7 0.013 2.8E-07 43.9 7.9 64 98-167 3-66 (133)
150 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.0028 6E-08 42.2 3.9 33 121-160 2-34 (82)
151 KOG3414 Component of the U4/U6 96.6 0.0075 1.6E-07 44.9 6.3 66 98-169 6-71 (142)
152 PF13728 TraF: F plasmid trans 96.6 0.006 1.3E-07 49.2 6.4 47 107-160 112-158 (215)
153 TIGR02183 GRXA Glutaredoxin, G 96.6 0.0029 6.4E-08 43.4 4.0 36 121-160 2-37 (86)
154 cd02066 GRX_family Glutaredoxi 96.6 0.0021 4.5E-08 41.0 2.9 35 121-165 2-36 (72)
155 KOG1672 ATP binding protein [P 96.5 0.013 2.9E-07 46.6 7.4 65 95-168 66-130 (211)
156 cd03019 DsbA_DsbA DsbA family, 96.4 0.0064 1.4E-07 46.1 5.1 42 116-160 14-55 (178)
157 PHA03050 glutaredoxin; Provisi 96.4 0.0077 1.7E-07 43.4 4.9 26 121-146 15-40 (108)
158 cd03073 PDI_b'_ERp72_ERp57 PDI 96.4 0.00057 1.2E-08 49.6 -1.1 43 16-60 41-86 (111)
159 cd03072 PDI_b'_ERp44 PDIb' fam 96.3 0.00062 1.3E-08 49.3 -1.3 45 16-62 37-84 (111)
160 cd02991 UAS_ETEA UAS family, E 96.2 0.0085 1.8E-07 43.7 4.5 53 105-161 5-61 (116)
161 PF13462 Thioredoxin_4: Thiore 96.0 0.025 5.5E-07 42.1 6.5 44 116-160 11-54 (162)
162 PRK13703 conjugal pilus assemb 95.8 0.033 7E-07 46.0 6.5 42 116-160 142-183 (248)
163 cd02972 DsbA_family DsbA famil 95.7 0.021 4.7E-07 38.1 4.6 37 121-160 1-37 (98)
164 PF11009 DUF2847: Protein of u 95.5 0.072 1.6E-06 38.4 6.7 64 99-168 3-66 (105)
165 PF00462 Glutaredoxin: Glutare 95.5 0.028 6E-07 35.5 4.1 34 121-164 1-34 (60)
166 TIGR02739 TraF type-F conjugat 95.4 0.055 1.2E-06 44.9 6.7 42 116-160 149-190 (256)
167 COG1331 Highly conserved prote 95.3 0.026 5.7E-07 52.3 4.8 59 102-168 32-93 (667)
168 PRK10329 glutaredoxin-like pro 95.3 0.025 5.4E-07 38.5 3.6 36 121-166 3-38 (81)
169 TIGR02189 GlrX-like_plant Glut 95.2 0.016 3.5E-07 40.9 2.5 22 121-142 10-31 (99)
170 PRK10954 periplasmic protein d 94.8 0.039 8.4E-07 43.8 4.1 41 117-160 37-80 (207)
171 PF13192 Thioredoxin_3: Thiore 94.7 0.087 1.9E-06 35.1 5.0 41 122-168 3-43 (76)
172 cd03418 GRX_GRXb_1_3_like Glut 94.6 0.062 1.3E-06 35.0 4.0 34 121-164 2-35 (75)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 94.6 0.08 1.7E-06 41.5 5.3 26 116-141 76-101 (197)
174 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.063 1.4E-06 35.2 3.9 35 121-165 3-37 (73)
175 TIGR02190 GlrX-dom Glutaredoxi 94.5 0.027 5.8E-07 37.8 2.1 24 118-141 7-30 (79)
176 TIGR02194 GlrX_NrdH Glutaredox 94.3 0.053 1.2E-06 35.6 3.1 35 122-166 2-36 (72)
177 cd02983 P5_C P5 family, C-term 94.2 0.013 2.8E-07 43.5 -0.0 44 16-61 47-91 (130)
178 KOG1752 Glutaredoxin and relat 94.1 0.12 2.6E-06 37.2 4.8 43 105-160 6-48 (104)
179 PRK15317 alkyl hydroperoxide r 93.8 0.2 4.4E-06 45.0 6.8 49 116-169 115-163 (517)
180 cd03013 PRX5_like Peroxiredoxi 93.6 0.092 2E-06 39.9 3.7 43 116-160 29-73 (155)
181 TIGR02181 GRX_bact Glutaredoxi 93.6 0.04 8.7E-07 36.6 1.5 21 122-142 2-22 (79)
182 TIGR00365 monothiol glutaredox 93.5 0.098 2.1E-06 36.8 3.4 31 126-166 24-54 (97)
183 TIGR03143 AhpF_homolog putativ 93.1 0.33 7.1E-06 44.2 7.1 47 117-168 475-522 (555)
184 cd02981 PDI_b_family Protein D 92.9 0.56 1.2E-05 31.9 6.5 51 99-159 3-53 (97)
185 PF13848 Thioredoxin_6: Thiore 92.5 0.3 6.6E-06 36.9 5.1 62 98-167 79-141 (184)
186 PTZ00062 glutaredoxin; Provisi 92.1 0.3 6.6E-06 39.1 4.9 48 105-166 105-155 (204)
187 PRK10877 protein disulfide iso 92.0 0.21 4.6E-06 40.6 4.0 29 116-144 106-134 (232)
188 cd03029 GRX_hybridPRX5 Glutare 91.6 0.14 3.1E-06 33.3 2.1 21 121-141 3-23 (72)
189 cd03028 GRX_PICOT_like Glutare 91.4 0.17 3.7E-06 34.8 2.5 17 127-143 21-37 (90)
190 PRK10824 glutaredoxin-4; Provi 91.3 0.25 5.3E-06 36.2 3.2 17 127-143 28-44 (115)
191 KOG3170 Conserved phosducin-li 90.9 1.2 2.6E-05 36.0 7.0 60 97-162 93-152 (240)
192 COG0695 GrxC Glutaredoxin and 90.6 0.3 6.5E-06 33.1 3.0 20 121-140 3-22 (80)
193 PRK11509 hydrogenase-1 operon 89.8 1.1 2.5E-05 33.5 5.8 61 101-168 22-84 (132)
194 PRK10638 glutaredoxin 3; Provi 89.6 0.26 5.6E-06 33.2 2.0 35 121-165 4-38 (83)
195 PF00837 T4_deiodinase: Iodoth 88.9 0.64 1.4E-05 38.2 4.1 59 95-160 82-142 (237)
196 TIGR03140 AhpF alkyl hydropero 88.6 1.4 3.1E-05 39.6 6.6 48 116-168 116-163 (515)
197 PRK11657 dsbG disulfide isomer 88.0 0.7 1.5E-05 38.0 3.9 29 116-144 116-144 (251)
198 COG1225 Bcp Peroxiredoxin [Pos 87.5 0.86 1.9E-05 35.2 3.9 46 116-164 29-75 (157)
199 cd02982 PDI_b'_family Protein 87.4 0.094 2E-06 36.1 -1.4 42 16-59 35-76 (103)
200 PF02630 SCO1-SenC: SCO1/SenC; 87.1 1.7 3.8E-05 33.5 5.5 45 116-160 51-96 (174)
201 COG2143 Thioredoxin-related pr 85.5 2.5 5.4E-05 32.9 5.4 46 116-164 41-89 (182)
202 PF01216 Calsequestrin: Calseq 83.4 4.1 9E-05 35.4 6.4 64 98-168 36-105 (383)
203 PF05768 DUF836: Glutaredoxin- 83.4 1.4 3E-05 29.7 2.9 41 121-167 2-42 (81)
204 cd03072 PDI_b'_ERp44 PDIb' fam 82.7 3.3 7.2E-05 29.6 4.9 55 101-165 4-61 (111)
205 cd03067 PDI_b_PDIR_N PDIb fami 82.0 8 0.00017 27.9 6.4 56 99-163 5-60 (112)
206 cd03035 ArsC_Yffb Arsenate Red 81.1 1.5 3.2E-05 31.3 2.5 21 122-142 2-22 (105)
207 cd02977 ArsC_family Arsenate R 80.1 1.1 2.3E-05 31.5 1.5 21 122-142 2-22 (105)
208 cd03074 PDI_b'_Calsequestrin_C 79.8 10 0.00022 27.7 6.4 65 102-170 7-71 (120)
209 PHA03075 glutaredoxin-like pro 77.8 4.2 9.1E-05 30.0 4.0 30 118-147 2-31 (123)
210 PF13848 Thioredoxin_6: Thiore 73.7 1.1 2.3E-05 33.8 0.0 42 16-59 118-159 (184)
211 cd03073 PDI_b'_ERp72_ERp57 PDI 72.1 6.7 0.00014 28.1 3.9 54 102-164 5-62 (111)
212 PRK01655 spxA transcriptional 70.6 5 0.00011 29.6 3.0 26 121-146 2-27 (131)
213 cd03060 GST_N_Omega_like GST_N 70.4 3.1 6.8E-05 26.6 1.7 22 123-144 3-24 (71)
214 TIGR01617 arsC_related transcr 69.7 6.8 0.00015 28.1 3.5 29 123-160 3-31 (117)
215 cd03036 ArsC_like Arsenate Red 69.7 4.5 9.7E-05 28.9 2.5 19 123-141 3-21 (111)
216 COG1651 DsbG Protein-disulfide 68.4 9.6 0.00021 30.4 4.5 33 116-148 83-115 (244)
217 PF04592 SelP_N: Selenoprotein 68.2 11 0.00023 31.1 4.6 45 116-160 25-70 (238)
218 cd02983 P5_C P5 family, C-term 66.4 36 0.00079 24.9 6.9 64 97-168 4-72 (130)
219 KOG2603 Oligosaccharyltransfer 65.1 18 0.00038 31.1 5.5 70 95-167 40-118 (331)
220 COG1999 Uncharacterized protei 63.3 27 0.00059 27.8 6.1 45 116-160 66-112 (207)
221 PRK12559 transcriptional regul 61.9 9.3 0.0002 28.2 3.0 26 121-146 2-27 (131)
222 cd03051 GST_N_GTT2_like GST_N 59.0 6.1 0.00013 24.9 1.4 23 123-145 3-25 (74)
223 cd00570 GST_N_family Glutathio 58.7 5.6 0.00012 24.0 1.2 22 123-144 3-24 (71)
224 KOG3171 Conserved phosducin-li 58.5 36 0.00078 28.0 6.0 60 96-160 139-198 (273)
225 cd03032 ArsC_Spx Arsenate Redu 58.5 7.7 0.00017 27.7 2.0 20 122-141 3-22 (115)
226 KOG2640 Thioredoxin [Function 53.9 3.6 7.8E-05 35.1 -0.4 32 116-147 75-106 (319)
227 cd03040 GST_N_mPGES2 GST_N fam 53.8 11 0.00024 24.3 2.0 24 122-145 3-26 (77)
228 TIGR03143 AhpF_homolog putativ 53.7 56 0.0012 29.8 7.2 51 104-160 355-405 (555)
229 PRK13344 spxA transcriptional 50.6 18 0.00039 26.7 2.9 25 121-145 2-26 (132)
230 PF06053 DUF929: Domain of unk 49.9 25 0.00055 29.1 3.9 33 116-148 57-89 (249)
231 PLN02182 cytidine deaminase 49.7 7.9 0.00017 33.5 1.0 14 125-139 129-142 (339)
232 cd03059 GST_N_SspA GST_N famil 49.3 11 0.00025 23.7 1.5 23 123-145 3-25 (73)
233 cd03037 GST_N_GRX2 GST_N famil 45.4 12 0.00027 23.7 1.2 22 123-144 3-24 (71)
234 cd03031 GRX_GRX_like Glutaredo 45.1 16 0.00034 27.7 1.9 26 121-146 2-33 (147)
235 cd03041 GST_N_2GST_N GST_N fam 44.1 15 0.00033 23.9 1.5 23 122-144 3-25 (77)
236 cd03045 GST_N_Delta_Epsilon GS 43.8 15 0.00033 23.2 1.5 23 123-145 3-25 (74)
237 PF00255 GSHPx: Glutathione pe 43.0 98 0.0021 22.1 5.7 42 116-160 20-61 (108)
238 KOG0833 Cytidine deaminase [Nu 39.5 17 0.00036 28.5 1.3 18 124-142 101-118 (173)
239 cd03069 PDI_b_ERp57 PDIb famil 38.4 1.3E+02 0.0029 20.7 5.9 51 98-158 3-53 (104)
240 cd03068 PDI_b_ERp72 PDIb famil 37.1 1.5E+02 0.0032 20.8 7.0 54 97-159 2-55 (107)
241 KOG2244 Highly conserved prote 34.5 15 0.00032 34.1 0.3 58 102-167 101-161 (786)
242 cd03033 ArsC_15kD Arsenate Red 33.8 51 0.0011 23.6 3.0 20 122-141 3-22 (113)
243 COG3019 Predicted metal-bindin 33.1 47 0.001 25.3 2.7 23 118-140 25-47 (149)
244 COG0295 Cdd Cytidine deaminase 28.7 30 0.00065 26.0 1.1 12 125-137 85-96 (134)
245 PF07912 ERp29_N: ERp29, N-ter 28.4 2.5E+02 0.0054 20.9 6.1 55 101-162 9-64 (126)
246 cd03056 GST_N_4 GST_N family, 25.5 44 0.00096 20.7 1.4 23 123-145 3-25 (73)
247 PF09180 ProRS-C_1: Prolyl-tRN 23.7 67 0.0015 20.9 2.0 20 104-131 2-21 (68)
248 cd03055 GST_N_Omega GST_N fami 23.0 68 0.0015 21.4 2.0 23 122-144 20-42 (89)
249 COG0386 BtuE Glutathione perox 22.2 1.9E+02 0.0042 22.4 4.5 42 116-160 24-65 (162)
250 cd00862 ProRS_anticodon_zinc P 22.1 1.1E+02 0.0023 24.1 3.2 27 97-131 128-154 (202)
251 PRK12411 cytidine deaminase; P 22.0 47 0.001 24.7 1.1 12 128-139 85-96 (132)
252 COG4545 Glutaredoxin-related p 21.8 59 0.0013 22.3 1.4 25 122-146 5-29 (85)
253 PF01216 Calsequestrin: Calseq 21.4 3.2E+02 0.0069 24.1 6.1 64 101-168 254-317 (383)
254 PRK05578 cytidine deaminase; V 20.9 51 0.0011 24.4 1.1 14 125-139 83-96 (131)
255 PF13417 GST_N_3: Glutathione 20.9 90 0.0019 19.9 2.2 19 124-142 2-20 (75)
256 KOG4163 Prolyl-tRNA synthetase 20.3 95 0.0021 28.2 2.7 28 97-132 467-494 (551)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-23 Score=185.14 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=105.1
Q ss_pred cccccccCCcccEEEeeecCcccccccccccccCCCCCCCCcccccc-c-c---------------CCccccCCccc-cc
Q 030873 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS-L-K---------------SNHNLRHGKVK-GL 77 (170)
Q Consensus 16 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~-~---------------~~~~~~~~~~~-~~ 77 (170)
+++|++|||++.||++|...+. ++..+|| +....+| +++..++. + + +...+..++++ .+
T Consensus 278 ~~vAk~f~~~l~Fi~~d~e~~~-~~~~~~G-l~~~~~~-~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~ 354 (493)
T KOG0190|consen 278 EEVAKKFKGKLRFILIDPESFA-RVLEFFG-LEEEQLP-IRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHL 354 (493)
T ss_pred HHHHHhcccceEEEEEChHHhh-HHHHhcC-cccccCC-eeEEeeccccccccCccccccHHHHHHHHHHHhcCcccccc
Confidence 4689999999999999776664 6888888 7877777 44443332 1 1 33445556665 55
Q ss_pred ccccCCCCCCCCCCCCccceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEE
Q 030873 78 IDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157 (170)
Q Consensus 78 ~~~~~~e~~~~~~~~~~~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~ 157 (170)
.++++|+++.. .+|+.++ ++||++++.+ .+|.|||.|||||||||++++|+|++||+.|++ ..+++|++
T Consensus 355 kSqpiPe~~~~------~pVkvvV-gknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAK 423 (493)
T KOG0190|consen 355 KSQPIPEDNDR------SPVKVVV-GKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAK 423 (493)
T ss_pred ccCCCCccccc------CCeEEEe-ecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEE
Confidence 56667766654 4566655 7899999995 899999999999999999999999999999998 77899999
Q ss_pred EEccCCcc
Q 030873 158 HNGLSEFN 165 (170)
Q Consensus 158 VD~~d~~~ 165 (170)
||+ +.|+
T Consensus 424 mDa-TaNd 430 (493)
T KOG0190|consen 424 MDA-TAND 430 (493)
T ss_pred ecc-cccc
Confidence 999 6554
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.4e-17 Score=121.80 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=58.7
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
..+.+..+|++.|.+ ++.+|+|+|||+|||||+.|.|.++++...|.+ .+.|++||. |++.++++
T Consensus 45 ~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdt-D~~~ela~ 109 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDT-DEHPELAE 109 (150)
T ss_pred ccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEcc-ccccchHh
Confidence 444778999988884 899999999999999999999999999999977 799999999 99988863
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.66 E-value=2.2e-16 Score=115.48 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
.++|++.+... .+++|||+|||+|||||+.|.|.++++++++++ .+.|++||+ ++++++++
T Consensus 2 ~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDv-D~~~~la~ 62 (114)
T cd02954 2 GWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDI-DEVPDFNK 62 (114)
T ss_pred HHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEEC-CCCHHHHH
Confidence 56888888742 688999999999999999999999999999976 589999999 99988763
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.64 E-value=6.2e-16 Score=112.95 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=55.5
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.. ++.++|++++... +.++++||+||||||+||+.+.|.|+++++.+++ .+.|++||+ +++.+++
T Consensus 10 ~v~~-l~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~-d~~~~l~ 76 (113)
T cd03006 10 PVLD-FYKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINC-WWPQGKC 76 (113)
T ss_pred CeEE-echhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEEC-CCChHHH
Confidence 3444 6788999873211 2899999999999999999999999999999976 599999999 8777664
No 5
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.63 E-value=5.8e-16 Score=117.29 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=59.0
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
+..+.+.++|++.+..+ .+++|||+|||+|||||+.|.|.++++++++++ .+.|++||+ |+++++++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDV-De~~dla~ 71 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDI-TEVPDFNT 71 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEEC-CCCHHHHH
Confidence 34557789999999753 689999999999999999999999999999976 588999999 99988864
No 6
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.5e-16 Score=111.74 Aligned_cols=60 Identities=38% Similarity=0.630 Sum_probs=48.4
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+++.....+...+++++|+|||+|||||+.+.|.+.+|+.+|.+ +.|++||+ |+..+++
T Consensus 8 ~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdv-de~~~~~ 67 (106)
T KOG0907|consen 8 SDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDV-DELEEVA 67 (106)
T ss_pred hhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEec-ccCHhHH
Confidence 344444444334679999999999999999999999999999975 99999999 7655543
No 7
>PTZ00102 disulphide isomerase; Provisional
Probab=99.63 E-value=4.1e-16 Score=136.80 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=90.5
Q ss_pred ccccccCCcccEEEeeecCcccccccccccccCCCCCCCCcccccc--c-c--------------CCccccCCccc-ccc
Q 030873 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS--L-K--------------SNHNLRHGKVK-GLI 78 (170)
Q Consensus 17 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~--~-~--------------~~~~~~~~~~~-~~~ 78 (170)
.+|++||+++.|+.+|...++.|...-++ ++. .|.+.+.+.+. . . +...+..+++. .+.
T Consensus 271 ~~A~~~~~~~~f~~vd~~~~~~~~~~~~g-i~~--~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~ 347 (477)
T PTZ00102 271 KVARKLREKYAFVWLDTEQFGSHAKEHLL-IEE--FPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIK 347 (477)
T ss_pred HHHHhccCceEEEEEechhcchhHHHhcC-ccc--CceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccc
Confidence 58999999999999999987655666666 332 56655443211 0 0 11111111111 111
Q ss_pred cccCCCCCCCCCCCCccceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEE
Q 030873 79 DATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (170)
Q Consensus 79 ~~~~~e~~~~~~~~~~~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~V 158 (170)
+++.+ .....++.. ++.++|++.+.+ ++++|||+||||||++|+.+.|.|+++++.+++ ...+.++++
T Consensus 348 se~~p-------~~~~~~v~~-l~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~i 415 (477)
T PTZ00102 348 SEPIP-------EEQDGPVKV-VVGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKM 415 (477)
T ss_pred cCCCC-------CCCCCCeEE-ecccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEE
Confidence 11111 111234555 457899999764 789999999999999999999999999999976 457999999
Q ss_pred EccCCcccc
Q 030873 159 NGLSEFNLL 167 (170)
Q Consensus 159 D~~d~~~~l 167 (170)
|+ +.++.+
T Consensus 416 d~-~~~~~~ 423 (477)
T PTZ00102 416 NG-TANETP 423 (477)
T ss_pred EC-CCCccc
Confidence 99 776654
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.62 E-value=1.8e-15 Score=106.96 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+. .++++||+||||||++|+++.|.|+++++.+++ .+.|++||+ ++++.++
T Consensus 6 l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~-~~~~~~~ 65 (101)
T cd03003 6 LDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNC-GDDRMLC 65 (101)
T ss_pred cCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeC-CccHHHH
Confidence 57889999996 679999999999999999999999999999976 599999999 8777654
No 9
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.59 E-value=3.5e-15 Score=106.51 Aligned_cols=57 Identities=32% Similarity=0.431 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
+.++|++.+.++ .+++|||+|||+||++|+.+.|.++++++.+. .+.|++||+ ++++
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~-d~~~ 58 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNG-DEND 58 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEEC-CCCh
Confidence 578999999853 59999999999999999999999999999993 489999999 7664
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.59 E-value=4.5e-15 Score=105.16 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+.+ ++++++|+|||+||++|+++.|.|+++++++.+ .+.|++||+ +++++++
T Consensus 6 l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~-~~~~~~~ 66 (104)
T cd03004 6 LTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDC-QKYESLC 66 (104)
T ss_pred cCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEEC-CchHHHH
Confidence 578899999874 677999999999999999999999999999965 699999999 8877764
No 11
>PHA02278 thioredoxin-like protein
Probab=99.59 E-value=3.2e-15 Score=107.45 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+.++|.+.+. .+++|||+|||||||||+.|.|.++++++++.. .+.|++||+ +++
T Consensus 3 ~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdv-d~~ 57 (103)
T PHA02278 3 SLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNL-DAE 57 (103)
T ss_pred CHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEEC-Ccc
Confidence 4678999996 899999999999999999999999999988643 467899999 764
No 12
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.59 E-value=4.6e-15 Score=108.31 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
.++|++.+..+ .+++|||+|+|+|||||+.|.|.+++++++|++ .+.|++||+ |+.++++.
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDV-Dev~dva~ 62 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDV-DKVPVYTQ 62 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEec-cccHHHHH
Confidence 46788888764 699999999999999999999999999999975 499999999 99888763
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.55 E-value=1.9e-14 Score=102.96 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCC---CCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE---APVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~---~~v~~~~VD~~d~~~~la 168 (170)
++.++|++++. .++++||.||||||++|+++.|.|+++++.+++.. .++.+++||+ +++++++
T Consensus 6 l~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~-d~~~~l~ 71 (108)
T cd02996 6 LTSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC-DKESDIA 71 (108)
T ss_pred cCHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC-CCCHHHH
Confidence 57889999886 78899999999999999999999999999875321 2599999999 8777664
No 14
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=2.7e-14 Score=101.62 Aligned_cols=56 Identities=29% Similarity=0.522 Sum_probs=50.3
Q ss_pred eCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccC
Q 030873 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLS 162 (170)
Q Consensus 100 ~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d 162 (170)
+.+.++|++++. .+++|+|+|||+||++|+.+.|.++++++.+++ ..+.|+++|+ +
T Consensus 4 i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~-d 59 (102)
T cd02948 4 INNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEA-D 59 (102)
T ss_pred ccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeC-C
Confidence 467899999886 789999999999999999999999999999974 2488999999 6
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=120.83 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=57.8
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+.+ +|..||+..|..+ ...++|||+||||||+||+.+.|.+++++..|++ ++++++||| |+++.++
T Consensus 25 I~d-vT~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~-D~~p~vA 90 (304)
T COG3118 25 IKD-VTEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNC-DAEPMVA 90 (304)
T ss_pred cee-chHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecC-CcchhHH
Confidence 444 5788999887765 2566999999999999999999999999999987 899999999 9888775
No 16
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.53 E-value=4.2e-14 Score=108.38 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+... .++++||+||||||++|+++.|.|+++++++.+ .++.|++||+ +++++++
T Consensus 33 l~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDv-d~~~~la 95 (152)
T cd02962 33 FTPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDI-GRFPNVA 95 (152)
T ss_pred cCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEEC-CCCHHHH
Confidence 5688999988642 578999999999999999999999999999864 3599999999 8888775
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.52 E-value=2.6e-14 Score=99.74 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=50.7
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+|++.+..+ .++++||+|||+||++|+++.|.++++++.+.+ .+.+++||+ +++++++
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~-~~~~~l~ 59 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNC-DAQPQIA 59 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEec-cCCHHHH
Confidence 688888642 588999999999999999999999999999976 589999999 8877764
No 18
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-14 Score=116.73 Aligned_cols=66 Identities=35% Similarity=0.490 Sum_probs=59.2
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+|..+-++.+|+..+..+ ..+.|+|+|+|.|||||++++|.|..|+.+|++ .+|++||+ |+.+.++
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdV-d~c~~ta 67 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDV-DECRGTA 67 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeH-HHhhchh
Confidence 466778899999999875 789999999999999999999999999999975 89999999 8887764
No 19
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.50 E-value=7e-14 Score=101.77 Aligned_cols=64 Identities=30% Similarity=0.491 Sum_probs=56.5
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+..+.+.++|++.+. ++++|+|+||||||++|+.+.|.++++++++++ +.|++||+ +++++++
T Consensus 5 ~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~-~~~~~l~ 68 (113)
T cd02989 5 KYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNA-EKAPFLV 68 (113)
T ss_pred CeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEc-ccCHHHH
Confidence 4566677789999997 678999999999999999999999999999864 89999999 8887765
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.50 E-value=4.7e-14 Score=100.45 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccC-Cccccc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLS-EFNLLV 168 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d-~~~~la 168 (170)
++.+++.+ .++++|||+||||||++|+++.|.|+++++.+++ +.+++||. + ++++++
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~-~~~~~~l~ 65 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEE-SSIKPSLL 65 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEEC-CCCCHHHH
Confidence 55666665 3899999999999999999999999999999964 78999999 5 666553
No 21
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.50 E-value=5.4e-14 Score=98.19 Aligned_cols=62 Identities=34% Similarity=0.436 Sum_probs=55.4
Q ss_pred eCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 100 ~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+|.++|++.+.. +++++||.||++||++|+.+.|.|+++++.+++ ++.|+.||+ ++++.++
T Consensus 3 ~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~-~~~~~l~ 64 (103)
T PF00085_consen 3 VLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDC-DENKELC 64 (103)
T ss_dssp EESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEET-TTSHHHH
T ss_pred ECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhh-hccchhh
Confidence 3678899999983 489999999999999999999999999999986 799999999 8776654
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.48 E-value=8.3e-14 Score=99.02 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC--cccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE--FNLL 167 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~--~~~l 167 (170)
++.++|++.+.+ .++++||.|||+||++|+++.|.|+++++.+.+ .+.++.||+ +. +.++
T Consensus 5 l~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~-~~~~~~~~ 66 (109)
T cd03002 5 LTPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDC-DEDKNKPL 66 (109)
T ss_pred cchhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEec-CccccHHH
Confidence 568899999984 788999999999999999999999999999975 588999999 66 4444
No 23
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.48 E-value=1.2e-13 Score=96.90 Aligned_cols=60 Identities=20% Similarity=0.416 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
++.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++.+++ ...+.++++|+ ++++
T Consensus 5 l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~-~~~~ 64 (104)
T cd02995 5 VVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDA-TAND 64 (104)
T ss_pred EchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeC-cchh
Confidence 568899999984 678999999999999999999999999999976 34699999999 7653
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.48 E-value=1.2e-13 Score=96.76 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+. .+ .+||+|||+||++|+.+.|.|+++++++++....+.+++||+ +.+..++
T Consensus 5 l~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~-~~~~~~~ 66 (102)
T cd03005 5 LTEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC-TQHRELC 66 (102)
T ss_pred CCHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC-CCChhhH
Confidence 57889999996 34 499999999999999999999999999975334699999999 7766553
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.47 E-value=1.4e-13 Score=96.99 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++++. +. +||+|||+||++|+++.|.|+++++.+++ .++.+++||+ ++++.++
T Consensus 6 l~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~-~~~~~~~ 64 (101)
T cd02994 6 LTDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDV-TQEPGLS 64 (101)
T ss_pred cChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEc-cCCHhHH
Confidence 56889998774 33 78999999999999999999999998753 3699999999 7776654
No 26
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=6.9e-14 Score=121.43 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=88.0
Q ss_pred ccccccCC-cccEEEeeecCcccccccccccccCCCCCCCCcccccc-c--cC-------------CccccCCccccccc
Q 030873 17 NADGKFSS-KVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS-L--KS-------------NHNLRHGKVKGLID 79 (170)
Q Consensus 17 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~--~~-------------~~~~~~~~~~~~~~ 79 (170)
.+|++|+| ++.|+.+|....+. ....++ +.....|.+.+.+.+- . .. ...+..+++....
T Consensus 259 ~~a~~~~~~~i~f~~~d~~~~~~-~~~~~~-~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~- 335 (462)
T TIGR01130 259 EAAKKFRGKFVNFAVADEEDFGR-ELEYFG-LKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYL- 335 (462)
T ss_pred HHHHHCCCCeEEEEEecHHHhHH-HHHHcC-CCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeee-
Confidence 47889998 99999999886653 444455 3545677666655442 0 01 1111111111110
Q ss_pred ccCCCCCCCCCCCCccceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEE
Q 030873 80 ATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (170)
Q Consensus 80 ~~~~e~~~~~~~~~~~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD 159 (170)
.++..+......+.. ++..+|++.+.+ .+++|||.||||||++|+.+.|.|+++++.+++....+.|+++|
T Consensus 336 -----~se~~p~~~~~~v~~-l~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id 406 (462)
T TIGR01130 336 -----KSEPIPEDDEGPVKV-LVGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMD 406 (462)
T ss_pred -----ccCCCCccCCCccEE-eeCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEE
Confidence 011111111223444 458899999874 78999999999999999999999999999998633369999999
Q ss_pred ccCCcc
Q 030873 160 GLSEFN 165 (170)
Q Consensus 160 ~~d~~~ 165 (170)
+ +.++
T Consensus 407 ~-~~n~ 411 (462)
T TIGR01130 407 A-TAND 411 (462)
T ss_pred C-CCCc
Confidence 9 6654
No 27
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.46 E-value=1.9e-13 Score=100.95 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChh--hh--hhHHHHHHHHHHc--CCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGS--CK--YIEQGFSKLCKGS--GDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~--Ck--~l~P~~~~la~~~--~~~~~~v~~~~VD~~d~~~~la 168 (170)
+|.+||++.+.+ ++.++||+|||+|||| || ++.|.+.+++.++ .+ ++.|++||+ +++++++
T Consensus 14 lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~-d~~~~La 80 (120)
T cd03065 14 LNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDS-KKDAKVA 80 (120)
T ss_pred CChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeC-CCCHHHH
Confidence 578999999984 7889999999999988 99 9999999999998 54 699999999 8888875
No 28
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.3e-14 Score=124.48 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=57.8
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+.+++.++|++.+. .+..++|.|||||||||++++|.|+++|..++.....+.+++||+ +++.+++
T Consensus 27 Vl~Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa-t~~~~~~ 92 (493)
T KOG0190|consen 27 VLVLTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA-TEESDLA 92 (493)
T ss_pred eEEEecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec-chhhhhH
Confidence 33467899999998 899999999999999999999999999999987556899999999 6656554
No 29
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.45 E-value=2.1e-13 Score=98.77 Aligned_cols=64 Identities=31% Similarity=0.551 Sum_probs=52.2
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+..+ +.++|.+.+..+ +.+++|+|+||||||++|+.+.|.+++++++|.+ +.|++||+ +++ +++
T Consensus 6 v~~i-~~~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~-~~~-~l~ 69 (113)
T cd02957 6 VREI-SSKEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA-EKA-FLV 69 (113)
T ss_pred EEEE-cHHHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc-hhh-HHH
Confidence 4454 458999998742 1248999999999999999999999999999864 88999999 765 554
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.45 E-value=1.6e-13 Score=99.27 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+... +.++++||+||||||++|+.+.|.|+++++.+.+ .++.+++||+ ++++.++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~-d~~~~l~ 72 (111)
T cd02963 9 LTFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNA-GHERRLA 72 (111)
T ss_pred eeHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEec-cccHHHH
Confidence 4678888655321 2689999999999999999999999999999975 2589999999 7776654
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.45 E-value=3.6e-13 Score=96.79 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
++.++|+.++... +.++++||.||||||++|+++.|.|+++++.+++ .++.++.||+ +.
T Consensus 6 ~~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~-d~ 64 (109)
T cd02993 6 LSRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNA-DG 64 (109)
T ss_pred ccHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEEC-Cc
Confidence 5688999888532 2689999999999999999999999999999975 3599999999 65
No 32
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.44 E-value=4e-13 Score=97.76 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++.++|++.+.. .+++|||+|||+||++|+.+.|.|+++++.++++...+.|+++|+
T Consensus 6 l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~ 62 (114)
T cd02992 6 LDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62 (114)
T ss_pred CCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence 578899999984 568999999999999999999999999999876444699999998
No 33
>PTZ00051 thioredoxin; Provisional
Probab=99.44 E-value=4.3e-13 Score=93.70 Aligned_cols=63 Identities=32% Similarity=0.537 Sum_probs=54.6
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+..+.+.++|++++. .+++++|+|||+||++|+++.|.|+++++.+.+ +.++.||+ +++..++
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~-~~~~~~~ 64 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDV-DELSEVA 64 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEEC-cchHHHH
Confidence 456778889999886 789999999999999999999999999998754 89999999 7765543
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.42 E-value=5.4e-13 Score=93.61 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++.+.. .+++++|.|||+||++|+++.|.|.++++++.+ .+.++.+|+ ++++++.
T Consensus 5 l~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~-~~~~~~~ 65 (103)
T cd03001 5 LTDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDA-DVHQSLA 65 (103)
T ss_pred cCHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEEC-cchHHHH
Confidence 578899999873 677899999999999999999999999999875 699999999 8777653
No 35
>PRK09381 trxA thioredoxin; Provisional
Probab=99.40 E-value=9.1e-13 Score=94.10 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=54.0
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+..+ +.++|++.+.+ .+++++|+||+|||++|+++.|.|+++++.+.+ .+.++.+|+ +..+.++
T Consensus 5 v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~-~~~~~~~ 68 (109)
T PRK09381 5 IIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI-DQNPGTA 68 (109)
T ss_pred ceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEEC-CCChhHH
Confidence 4444 57899987653 688999999999999999999999999999976 589999999 7766653
No 36
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.39 E-value=6e-13 Score=94.61 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+++|+++. .+++++|.|||+||++|+++.|.|+++++.+++....+.++.+|+ +..++++
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~-~~~~~~~ 65 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA-TAYSSIA 65 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC-ccCHhHH
Confidence 46888743 577999999999999999999999999999965334699999999 7766654
No 37
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.39 E-value=1.2e-12 Score=91.25 Aligned_cols=61 Identities=26% Similarity=0.480 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+.++|++++..+ .+++|+|+|||+||++|+.+.|.++++++.+.. .+.++++|+ ++.++++
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~-~~~~~~~ 61 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEA-EELPEIS 61 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEcc-ccCHHHH
Confidence 357899999853 369999999999999999999999999999733 699999999 7766653
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.39 E-value=7.8e-13 Score=107.21 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhc-cCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSK-ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~-~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+++++|++.+..+. ..+++++|+||||||++|+++.|.|+++++.+++ .+.++++|+ +++++++
T Consensus 35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~-~~~~~l~ 99 (224)
T PTZ00443 35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDA-TRALNLA 99 (224)
T ss_pred CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecC-cccHHHH
Confidence 67899999887431 1368999999999999999999999999999976 699999999 7776654
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.38 E-value=1.4e-12 Score=91.52 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
++..+|++.+. .+++++|.|||+||++|+++.|.++++++.+++ ...+.++++|+ +.
T Consensus 5 l~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~-~~ 61 (104)
T cd02997 5 LTDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDC-TK 61 (104)
T ss_pred echHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEEC-CC
Confidence 46779999987 677999999999999999999999999999974 34689999999 65
No 40
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.38 E-value=1.8e-12 Score=101.28 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=53.0
Q ss_pred cceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 95 ~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
..+..+.+.++|.+.+..+ ..+.+|||+|||+||++|+.|.|.|++|+.+|.. +.|++||+ ++.
T Consensus 62 g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~-d~~ 125 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRA-SAT 125 (175)
T ss_pred CeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEec-cch
Confidence 3466666558999998742 1245999999999999999999999999999864 99999999 654
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.37 E-value=1.2e-12 Score=91.29 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+++++|++.+. ++++++|.||++||++|+.+.|.|+++++.+++ ..++.++.+|+ +++..+.
T Consensus 1 l~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-~~~~~~~~~d~-~~~~~~~ 62 (102)
T TIGR01126 1 LTASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-DPDIVLAKVDA-TAEKDLA 62 (102)
T ss_pred CchhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-CCceEEEEEEc-cchHHHH
Confidence 35789999987 799999999999999999999999999999975 33699999999 8777654
No 42
>PRK10996 thioredoxin 2; Provisional
Probab=99.37 E-value=2e-12 Score=97.27 Aligned_cols=60 Identities=27% Similarity=0.420 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.++|++++. .+++|+|+|||+||++|+.+.|.|.++++.+.+ ++.+++||+ +++++++
T Consensus 40 ~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~-~~~~~l~ 99 (139)
T PRK10996 40 ATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNT-EAERELS 99 (139)
T ss_pred cCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeC-CCCHHHH
Confidence 56889999886 799999999999999999999999999999875 699999999 8777764
No 43
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.34 E-value=3e-12 Score=94.39 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=51.1
Q ss_pred eCCHHHHHHHHHhhccCCCeEEEEEEC-------CCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 100 FKTDAEFFKILEKSKETGSLVVVDFYR-------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 100 ~~t~~~f~~~l~~~~~~~k~vlV~FyA-------~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+.+.++|.+.+... .+++|+|+||| +|||+|+.+.|.+++++.++++ ++.|++||+ ++.
T Consensus 6 ~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdv-d~~ 71 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDV-GDR 71 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEc-CCc
Confidence 35678999999843 47899999999 9999999999999999999975 589999999 653
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.34 E-value=2.8e-12 Score=89.84 Aligned_cols=63 Identities=30% Similarity=0.486 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC-ccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE-FNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~-~~~la 168 (170)
+++++|++.+.. .+++++|.|||+||++|+.+.|.|.++++.++. ...+.++.+|+ +. ++.++
T Consensus 5 l~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~-~~~~~~~~ 68 (105)
T cd02998 5 LTDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDA-DEANKDLA 68 (105)
T ss_pred cchhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEEC-CCcchhhH
Confidence 467899998863 567999999999999999999999999999973 34699999999 66 55543
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.33 E-value=3.4e-12 Score=96.42 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
...|++++. .++++||+|||+||++|+.+.|.+.++++.|.+ .+.|+.||+ +.
T Consensus 10 ~~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~v-d~ 62 (142)
T cd02950 10 STPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNV-DN 62 (142)
T ss_pred cCCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEc-CC
Confidence 346777776 899999999999999999999999999999975 577888888 54
No 46
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.31 E-value=3.5e-12 Score=92.89 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCC--ChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTS--CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~W--Cg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++..+|++.+. .+..++|.|||+| |++|+.+.|.+++++++|++ .+.|++||+ +++++++
T Consensus 15 ~~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdi-d~~~~la 76 (111)
T cd02965 15 VDAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGR-ADEQALA 76 (111)
T ss_pred cccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEEC-CCCHHHH
Confidence 56889999996 7899999999997 99999999999999999986 689999999 8887775
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.31 E-value=5.7e-12 Score=89.33 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=45.6
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEccCC
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
+.|++++. .+++|||+|||+||++|+.+.|.+ .++++.+.+ ++.++.||+ ++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~-~~ 56 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADW-TK 56 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEec-CC
Confidence 46788776 899999999999999999999988 688888864 699999999 65
No 48
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.30 E-value=1.2e-11 Score=109.51 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=52.7
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+..++.++|+.++... +.+++|||+||||||++|+.|.|.|++++++|++ ..+.|++||+ +.+
T Consensus 353 Vv~L~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdv-D~~ 415 (463)
T TIGR00424 353 VVSLSRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRA-DGD 415 (463)
T ss_pred eEECCHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEEC-CCC
Confidence 3336788999998521 3799999999999999999999999999999975 2489999999 543
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.27 E-value=1.3e-11 Score=85.52 Aligned_cols=59 Identities=34% Similarity=0.491 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
+.++|.+.+.. .+++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.+|+ +.++.+
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~-~~~~~~ 60 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNV-DENPDI 60 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEEC-CCCHHH
Confidence 46789988873 577999999999999999999999999998865 699999999 777654
No 50
>PLN02309 5'-adenylylsulfate reductase
Probab=99.27 E-value=2e-11 Score=107.98 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=55.3
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccC-Ccccc
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLS-EFNLL 167 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d-~~~~l 167 (170)
.+.. ++.++|++++... +.++++||+||||||++|++|.|.|+++++.|.+ .++.|++||+ + .+.++
T Consensus 346 ~Vv~-Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~-d~~~~~l 413 (457)
T PLN02309 346 NVVA-LSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRA-DGDQKEF 413 (457)
T ss_pred CcEE-CCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEEC-CCcchHH
Confidence 4444 6789999988532 3799999999999999999999999999999975 2699999999 6 54444
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.26 E-value=1.8e-11 Score=84.11 Aligned_cols=62 Identities=29% Similarity=0.485 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|.+.+. .+++++|.||++||++|+.+.|.|.++++.++. ...+.|+.+|+ +++..+.
T Consensus 3 l~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~-~~~~~~~ 64 (101)
T cd02961 3 LTDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDC-TANNDLC 64 (101)
T ss_pred ccHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeec-cchHHHH
Confidence 46789999998 566999999999999999999999999999952 23799999999 7665553
No 52
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.26 E-value=1.1e-11 Score=90.82 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=40.7
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++++.+..++..+++|||+|||+||++|+.|.|.+.+....+.. ..+ |+.||+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~--fv~v~v 59 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHN--FVMVNL 59 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCc--EEEEEe
Confidence 45666665556899999999999999999999999998776543 223 445555
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.26 E-value=1.3e-11 Score=107.29 Aligned_cols=63 Identities=24% Similarity=0.465 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++|++++. .+++++|.||||||++|+++.|.|.++++.+.+...++.|++||+ +++.+++
T Consensus 6 l~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~-~~~~~l~ 68 (462)
T TIGR01130 6 LTKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA-TEEKDLA 68 (462)
T ss_pred CCHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC-CCcHHHH
Confidence 67899999997 788999999999999999999999999999876445699999999 8777664
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.24 E-value=1.6e-11 Score=107.77 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=55.8
Q ss_pred eCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 100 ~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.++.++|++++. .++.+||+||||||++|+++.|.|+++++.+.+...++.+++||+ +++.+++
T Consensus 36 ~l~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~-~~~~~l~ 99 (477)
T PTZ00102 36 VLTDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA-TEEMELA 99 (477)
T ss_pred EcchhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC-CCCHHHH
Confidence 367889999997 688999999999999999999999999998865445799999999 7777664
No 55
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.21 E-value=3.8e-11 Score=95.23 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=50.3
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.+..+ +.++|...+..+ ..+.+|||+|||+||++|+.|.|.|++||.+|.. +.|++||+ +.
T Consensus 83 ~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~a-d~ 143 (192)
T cd02988 83 EVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIS-TQ 143 (192)
T ss_pred eEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEh-HH
Confidence 45554 688998777643 1356999999999999999999999999999964 89999999 54
No 56
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.21 E-value=5.1e-11 Score=83.69 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=47.8
Q ss_pred HHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 106 f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++..+.. .+++|+|.||++||++|+.+.|.++++++.+.+ ++.++++|+ ++.++++
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~-d~~~~l~ 60 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDI-DEDQEIA 60 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEEC-CCCHHHH
Confidence 3455553 799999999999999999999999999999875 699999999 8776654
No 57
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.20 E-value=5.9e-11 Score=87.59 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.+.++|.+.+. +++.++|+||++|||+|+++.|.+.+++++. ++.++.||+ +.+
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdv-d~~ 64 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDS-ENN 64 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEEC-CCc
Confidence 56788999997 7889999999999999999999999999983 356888888 543
No 58
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.18 E-value=4.7e-11 Score=86.78 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+|.+.+. .+..++|.|||+||++|+.+.|.+++++..+ + .+.+.++|+ +++++++
T Consensus 14 ~~~~~l~----~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~-d~~~~l~ 68 (113)
T cd02975 14 EFFKEMK----NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDF-DEDKEKA 68 (113)
T ss_pred HHHHHhC----CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeC-CcCHHHH
Confidence 3555554 6778999999999999999999999999887 3 589999999 8877664
No 59
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.17 E-value=7.2e-11 Score=86.38 Aligned_cols=53 Identities=9% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHHHhhccCC-CeEEEEEECCCChhhhhhHHHHH---HHHHHcCCCCCCEEEEEEEccCCc
Q 030873 104 AEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 104 ~~f~~~l~~~~~~~-k~vlV~FyA~WCg~Ck~l~P~~~---~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+.+++++. .+ ++|||+|||+||++|+.+.|.+. .+.+.+.+ ++.++.||+ +..
T Consensus 4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~-d~~ 60 (125)
T cd02951 4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINI-DGD 60 (125)
T ss_pred HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEc-cCC
Confidence 34555565 78 99999999999999999999885 56666654 688999999 654
No 60
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.16 E-value=4.6e-11 Score=90.97 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCC-----CCCEEEEEEEccCCcc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNGLSEFN 165 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~-----~~~v~~~~VD~~d~~~ 165 (170)
.+++|+|+|||+||++|+++.|.+.++.+++.+. ..++.++.|+. ++..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~-D~~~ 77 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM-DQSE 77 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC-CCCH
Confidence 6899999999999999999999999999877642 23599999998 6543
No 61
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.10 E-value=4.1e-11 Score=100.40 Aligned_cols=52 Identities=23% Similarity=0.428 Sum_probs=46.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+..++|+||||||+|||++.|+|.+.+-++++-...+++.++|+ +..+.++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa-T~f~aiA 93 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA-TRFPAIA 93 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc-ccchhhH
Confidence 688999999999999999999999999999987666899999999 6666554
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.08 E-value=1.8e-10 Score=84.58 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEEC--CCCh---hhhhhHHHHHHHHHHcCCCCCCEEEEEEEcc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYR--TSCG---SCKYIEQGFSKLCKGSGDQEAPVIFLKHNGL 161 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA--~WCg---~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~ 161 (170)
++..+|+++|. .++.+||.||| |||+ +|+.|+|.+.+.+. .+.+++||++
T Consensus 6 L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~ 60 (116)
T cd03007 6 LDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIK 60 (116)
T ss_pred CChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecc
Confidence 67899999997 78999999999 9999 77777777765554 3899999993
No 63
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.08 E-value=3.9e-10 Score=78.30 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 117 ~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+|+++|+|||+||++|++..|.+.++.++|++ ..++.|+.|.. |+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~-d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSL-DED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEe-CCC
Confidence 68999999999999999999999999999994 45799999998 543
No 64
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.06 E-value=2.4e-10 Score=84.57 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.+++|||+|||+||++|+.+.|.++++++.+++...++.++.|++ +..
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~-d~~ 63 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR-DRS 63 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEec-CCC
Confidence 689999999999999999999999999999976323577777877 543
No 65
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2e-10 Score=99.36 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=84.6
Q ss_pred ccccccCCcccEEEeeecCcccccccccccccCCCCCCCCccccccccCCccccCCcccccccccCCCCCCCCCCCCccc
Q 030873 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLASLKSNHNLRHGKVKGLIDATQGESDEDDDLCPVEC 96 (170)
Q Consensus 17 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 96 (170)
+++..++|++.+.-+|.+........+.- ...|++.+..-. .+....-.....+.+..-...+.... .......
T Consensus 71 ~~~~~l~~~~~~~~vd~~~~~~~~~~y~i----~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 144 (383)
T KOG0191|consen 71 KLAKALKGKVKIGAVDCDEHKDLCEKYGI----QGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPS-VKKLVEG 144 (383)
T ss_pred HHHHHhcCceEEEEeCchhhHHHHHhcCC----ccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccc-cccccCC
Confidence 56778889999999999866544555443 345654444433 11110000011111111111111111 1111112
Q ss_pred -eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 97 -VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 97 -v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
+.. ++..+|+..+.+ .+..++|.||||||+||+.++|.|++++..+.. ...+.++++|+ +.+..+
T Consensus 145 ~v~~-l~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~-~~~~~~ 210 (383)
T KOG0191|consen 145 EVFE-LTKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDA-TVHKSL 210 (383)
T ss_pred ceEE-ccccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeecc-chHHHH
Confidence 333 567899998884 788999999999999999999999999999974 45799999998 544443
No 66
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.01 E-value=9e-10 Score=73.99 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=45.8
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
+|+..+. .+++++|.||++||++|+.+.|.++++++..+ ++.++.+|+ +...++
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~-~~~~~~ 55 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP----KVKFVKVDV-DENPEL 55 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEEC-CCChhH
Confidence 5777777 56999999999999999999999999999832 599999999 665544
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.01 E-value=6.7e-10 Score=77.98 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=44.5
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.++++++.||++||++|+.+.|.++++|++|++ ++.|++||+ ++++.++
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~-~~~~~~~ 59 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDA-DDFGRHL 59 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEch-HhhHHHH
Confidence 478999999999999999999999999999986 699999999 8776654
No 68
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.00 E-value=8.5e-10 Score=81.09 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.+++|||+|||+||++|+.+.|.+.++.+++++...++.++.|++ +..
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~-d~~ 64 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISW-DRD 64 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEEC-CCC
Confidence 688999999999999999999999999999875323577777777 433
No 69
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.00 E-value=8.8e-10 Score=100.14 Aligned_cols=62 Identities=24% Similarity=0.384 Sum_probs=51.2
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEccC
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNGLS 162 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~~d 162 (170)
...+.+.++|++.+..++.++|+|+|+|||+||++|+.++|.. .++.+.++ ++.++++|+++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~ 518 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTA 518 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCC
Confidence 4455678899999987766789999999999999999999975 67777775 38899999943
No 70
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.98 E-value=1.6e-09 Score=80.34 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHH-H--HHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~-~--~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++++.. .+|+|||+|||+||++|+.|.+. | .++++.+.. +++++++|+ ++.++++
T Consensus 5 ~eal~~Ak~----~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~-~~~~~~~ 65 (124)
T cd02955 5 EEAFEKARR----EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDR-EERPDVD 65 (124)
T ss_pred HHHHHHHHH----cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeC-CcCcHHH
Confidence 445555555 89999999999999999999873 3 356666543 699999999 7776654
No 71
>PTZ00062 glutaredoxin; Provisional
Probab=98.97 E-value=1.5e-09 Score=86.87 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+.++|++.+.. ....+|++|||+||++|++|.|.+.+|++.|++ +.|+.||+
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~ 56 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNL 56 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEcc
Confidence 457889998872 347789999999999999999999999999975 99999998
No 72
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.96 E-value=9e-10 Score=78.68 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEE
Q 030873 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (170)
Q Consensus 117 ~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~V 158 (170)
++++||+||++||++|+.+.|.++++++.+.+ ++.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEE
Confidence 78999999999999999999999999988865 4555544
No 73
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.95 E-value=5.7e-10 Score=93.42 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCC--CCCEEEEEEEccCCcccccc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ--EAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~--~~~v~~~~VD~~d~~~~la~ 169 (170)
+.+|++.++. ...+|+|+|||.||+..+.++|+|+++|+.+++. ++++++++||| +.+..|++
T Consensus 2 t~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc-d~e~~ia~ 66 (375)
T KOG0912|consen 2 TSENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC-DKEDDIAD 66 (375)
T ss_pred ccccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc-chhhHHhh
Confidence 4568888887 7999999999999999999999999999988653 25799999999 88888764
No 74
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.94 E-value=7.9e-10 Score=75.57 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=44.5
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
+|++.+..++..+++++|+|+|+||++|+.|...+ .++.+.+.. +++++.||. +..
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~-~~~ 63 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDV-DDE 63 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEET-TTH
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEc-CCC
Confidence 46666666666899999999999999999999877 455554543 699999999 543
No 75
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=3.2e-10 Score=101.26 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=55.2
Q ss_pred cceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEcc
Q 030873 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGL 161 (170)
Q Consensus 95 ~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~ 161 (170)
+++.. ++.++|..+|.. +.+-.||+||++|||||++++|+|.++|+.+..+..-+.++.|||.
T Consensus 39 D~ii~-Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA 101 (606)
T KOG1731|consen 39 DPIIE-LDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA 101 (606)
T ss_pred CCeEE-eehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc
Confidence 34444 678999999984 5578999999999999999999999999999988888999999984
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.90 E-value=2.2e-09 Score=82.27 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++..||+|||+||++|+++.|.+++++++|+ +.++.|+.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~ 88 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSL 88 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEe
Confidence 46667999999999999999999999999984 34555555
No 77
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.90 E-value=2.7e-09 Score=71.83 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=38.6
Q ss_pred EEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 120 vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.-||++||++|+.+.|.++++++.++. .+.+++||+ +++++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~-~~~~~~~ 46 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINV-MENPQKA 46 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeC-ccCHHHH
Confidence 46679999999999999999999999865 589999999 7766653
No 78
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.86 E-value=2.9e-09 Score=83.45 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=34.2
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++++|+|||+||++|+++.|.+.++.++ ++.++.|+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~ 105 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNY 105 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEEC
Confidence 689999999999999999999999988652 377888887
No 79
>PHA02125 thioredoxin-like protein
Probab=98.85 E-value=3.4e-09 Score=71.41 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=31.1
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+|.|||+||++|+.+.|.|+++. +.+++||. +++.+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~-~~~~~l~ 39 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDT-DEGVELT 39 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeC-CCCHHHH
Confidence 78999999999999999997652 45788998 7776654
No 80
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.82 E-value=6.2e-09 Score=75.98 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+|||+||++|+++.|.++++.+.+ ++.++.|+.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~ 63 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINY 63 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEEC
Confidence 6889999999999999999999999998875 277777776
No 81
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.81 E-value=6.6e-09 Score=70.35 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.3
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEE
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD 159 (170)
.|+|||+||++|+.+.|.++++++++.. .+.+++||
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 3789999999999999999999999975 58888877
No 82
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.9e-09 Score=91.30 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
..+|...+.. .+.+++|+|||||||||+.+.|.|.+++..+++ .+.++.||+ +++.++.
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~-~~~~~~~ 94 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC-DEHKDLC 94 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc-hhhHHHH
Confidence 4455555552 799999999999999999999999999999986 799999999 8877664
No 83
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.80 E-value=9.5e-09 Score=67.11 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=36.9
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.||++||++|+.+.|.++++++.+. ++.+..+|+ +++++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~-~~~~~l~ 45 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDA-AEFPDLA 45 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEc-ccCHhHH
Confidence 667999999999999999999988654 499999999 7776654
No 84
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.75 E-value=1.4e-08 Score=80.74 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++|||+|||+||++|+...|.+.++.++|++ .++.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecc
Confidence 589999999999999999999999999999975 3588888886
No 85
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.73 E-value=1.4e-08 Score=75.64 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=40.1
Q ss_pred CCCeEEEEEECC-CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 116 ~~k~vlV~FyA~-WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
.++++||+||++ ||++|+...|.+.++.+.|++ .++.++.|.. +...
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~--~~v~~v~v~~-~~~~ 74 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD--KGVDVVGVSS-DDDP 74 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTCEEEEEEE-SSSH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc--CceEEEEecc-cCCH
Confidence 799999999999 999999999999999999875 3577777777 5443
No 86
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.73 E-value=1.5e-08 Score=76.74 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++|||+|||+||+ |+...|.++++.++|++ .++.++.|++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEecc
Confidence 689999999999999 99999999999999975 3588888876
No 87
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.72 E-value=4e-08 Score=73.52 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=42.3
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEc
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+|++.+..++..+|+|+|+||+.||++|+.|...+ .++.+.... +++.+.+|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~ 66 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVH 66 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEe
Confidence 478888888888999999999999999999999865 344444432 477777776
No 88
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.70 E-value=3.4e-08 Score=72.28 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=38.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+|||+||++|+...|.+.++.++|++ .++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEecc
Confidence 579999999999999999999999999999985 3588888865
No 89
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.70 E-value=2.6e-08 Score=89.49 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++|||+|||+||++|+.+.|.+++++++++. .++.|+.|..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~--~~v~VI~Vs~ 97 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF--SSANLITVAS 97 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc--CCeEEEEEec
Confidence 789999999999999999999999999999974 2466766654
No 90
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.68 E-value=2.6e-08 Score=77.09 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++++|+|||+||++|+.+.|.++++.+. ++.++.|+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~ 100 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDY 100 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEEC
Confidence 689999999999999999999999988753 377888886
No 91
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.66 E-value=4.3e-08 Score=68.17 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=40.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.+++++|.||++||++|+...+.+.++..+++. .++.++.|++ +.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~-d~ 62 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNV-DD 62 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEEC-CC
Confidence 578999999999999999999999999999963 3699999999 55
No 92
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.65 E-value=6.5e-08 Score=80.52 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+|||+||++|+.+.|.+++++++|+ +.++.|++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~Vsv 204 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSV 204 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeC
Confidence 68999999999999999999999999999985 44555555
No 93
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.65 E-value=5e-08 Score=73.88 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+|||+||++|+...|.+.++.++|++ ..+.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEec
Confidence 688999999999999999999999999999975 3688888885
No 94
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.65 E-value=7.7e-08 Score=77.06 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.++++.|||+||++|+.+.|.+++++..+. .+.+.++|. +++++++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~-~~~~~~~ 179 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEA-NENPDLA 179 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeC-CCCHHHH
Confidence 45556666999999999999999999998854 588999999 8877765
No 95
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.61 E-value=6.9e-08 Score=78.94 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=39.0
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++|||+|||+||++|+...|.+.++.++|++ .++.++.|++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~--~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT--QGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 579999999999999999999999999999976 3588888887
No 96
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=8.1e-08 Score=73.33 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.+++++|+|||+||++|+...|.+.++.+++.+ .++.++.|++ +.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~--~~~~vi~i~~-d~ 104 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE--KGVEIIAVNV-DE 104 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc--CCeEEEEEEc-CC
Confidence 578999999999999999999999999999975 2588888887 43
No 97
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.59 E-value=9.2e-08 Score=65.48 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=38.1
Q ss_pred CCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 117 ~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
+++++|+||++||++|+.+.|.+.++++.+.. .+.++.+|+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~ 72 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNV 72 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEEC
Confidence 78999999999999999999999999999975 588999998
No 98
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.58 E-value=6.8e-08 Score=93.33 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=37.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEE
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD 159 (170)
.+++|||+|||+||++|+.+.|.++++.++|++ ..+.++.|.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~ 460 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVH 460 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEe
Confidence 689999999999999999999999999999976 357887775
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.58 E-value=8.9e-08 Score=75.36 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=30.7
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
||+|||+||++|+++.|.+.+++++|+ +.++.|++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~ 107 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTL 107 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEe
Confidence 777999999999999999999999984 56666776
No 100
>PLN02412 probable glutathione peroxidase
Probab=98.57 E-value=9.4e-08 Score=73.82 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=39.1
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+|||+||++|+...|.+.++.++|++ .++.++.|++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~--~g~~vvgv~~ 70 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE--QGFEILAFPC 70 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh--CCcEEEEecc
Confidence 579999999999999999999999999999986 3588888887
No 101
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.51 E-value=1.2e-07 Score=74.52 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEE
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~ 157 (170)
.+++++|+|||+||++|+.+.|.+.++.+.+.. ++.++.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~---~vv~Is 111 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET---DVVMIS 111 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC---cEEEEe
Confidence 688999999999999999999999998876532 455443
No 102
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.47 E-value=1.5e-07 Score=68.02 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=28.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~ 146 (170)
.+++++|+||++||++|+.+.|.+.++++.+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 5799999999999999999999999998874
No 103
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.47 E-value=1.2e-07 Score=72.81 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=40.1
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+|+|.++|.|.||+|||.+-|.+.++.+..++++..+-++-|+.
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~ 76 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS 76 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEec
Confidence 689999999999999999999999999999987555677777777
No 104
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.47 E-value=2.4e-07 Score=74.23 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCeEEEEEEC---CCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 117 GSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 117 ~k~vlV~FyA---~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+...++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|. +++++++
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~-~~~~~l~ 70 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT-PEDKEEA 70 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC-cccHHHH
Confidence 3444556888 9999999999999999999853 2466777776 6766654
No 105
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.43 E-value=1.4e-07 Score=67.11 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=33.5
Q ss_pred cCCCeEEEEEECCCChhhhhhHHHHHHH---HHHcCCCCCCEEEEEEEc
Q 030873 115 ETGSLVVVDFYRTSCGSCKYIEQGFSKL---CKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 115 ~~~k~vlV~FyA~WCg~Ck~l~P~~~~l---a~~~~~~~~~v~~~~VD~ 160 (170)
.+++++||.||+|||++|+.+.+.+.+. ...+.+ ++.++.+++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 48 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNI 48 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECES
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEec
Confidence 4799999999999999999999998864 444433 588888888
No 106
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.42 E-value=4.3e-07 Score=71.04 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCe-EEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~-vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++ ||+.+||+||++|+...|.++++.++|++ .++.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEec
Confidence 5664 45566999999999999999999999975 3588888876
No 107
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.40 E-value=2.2e-07 Score=73.37 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=27.7
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHH
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
.+|++||+|||+||++|++..|.+++++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHH
Confidence 79999999999999999999999999965
No 108
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.37 E-value=5.3e-07 Score=67.01 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCCeEEEEEECCC-ChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~FyA~W-Cg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.++++||+||+.| |++|+...|.+.++.++++ ++.++.|+. +..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~-d~~ 69 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISA-DLP 69 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEEC-CCH
Confidence 5789999999999 6999999999999999985 478888888 543
No 109
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.35 E-value=7.3e-07 Score=64.10 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCCeEEEEEECC-CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 116 ~~k~vlV~FyA~-WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
.++++||.||++ ||++|+...+.+.++..+|+. .++.++.|.. +..+++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~--~~~~vi~is~-d~~~~~ 73 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD--KGVQVIGIST-DDPEEI 73 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTEEEEEEES-SSHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc--ceEEeeeccc-ccccch
Confidence 579999999999 999999999999999999975 3688999988 665544
No 110
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.34 E-value=7.5e-07 Score=65.71 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCeEEEEEECCCChh-hhhhHHHHHHHHHHcCCCC-CCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQE-APVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~-Ck~l~P~~~~la~~~~~~~-~~v~~~~VD~ 160 (170)
.++++||.||++||++ |....|.+.++.+++++.. .++.++.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 5789999999999998 9999999999999997622 2588888887
No 111
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.29 E-value=1e-06 Score=67.99 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCCeEEEEEECCC-ChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~FyA~W-Cg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.++++||+||++| |++|+...|.+.++++++. ++.++.|.. |..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~-D~~ 87 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISA-DLP 87 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeC-CCH
Confidence 5789999999999 9999999999999999984 477888887 543
No 112
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.29 E-value=1.4e-06 Score=60.89 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=41.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+++-+.-|+++||++|+...+.++++++.+. ++.+..+|+ ++.++++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~-~~~~e~a 58 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDG-ALFQDEV 58 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEh-HhCHHHH
Confidence 57778888999999999999999999999875 499999999 7766543
No 113
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.28 E-value=1.3e-06 Score=64.60 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=37.1
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
.++.+|+.||++||++|+...|.+.++.+++.+ .++.++.|.. +...
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~-~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGP-ESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeC-CCHH
Confidence 345566666799999999999999999999964 3588888887 5443
No 114
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.27 E-value=1.5e-06 Score=68.47 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++|||.|||+|||+|++ .|.++++.++|++ ..+.++.+.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~--~gl~Vlg~p~ 65 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD--QGFVVLGFPC 65 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh--CCeEEEEeec
Confidence 6899999999999999975 8899999999975 3688999887
No 115
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.27 E-value=1.3e-06 Score=78.88 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHH-HHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS-KLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~-~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+....++.++++ .+|+|+|||||+||-.||.+++..- +.....+ ..++++.++|+|..++++.
T Consensus 460 s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~ 524 (569)
T COG4232 460 SPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAIT 524 (569)
T ss_pred CCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHH
Confidence 4455888999864 5579999999999999999999553 2222222 2359999999976666554
No 116
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.26 E-value=2.2e-06 Score=65.87 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||+||++||+.|+...|.+.++.++|++ .++.|+.|..
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~ 66 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINS 66 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEec
Confidence 578999999999999999999999999999974 3688888887
No 117
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.25 E-value=1.1e-06 Score=65.35 Aligned_cols=47 Identities=15% Similarity=-0.039 Sum_probs=38.3
Q ss_pred CeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 118 SLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 118 k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
++++|.|| ++||+.|+...|.+.++.+++++ .++.++.|.. +....+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~v~vi~vs~-d~~~~~ 76 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA--AGAEVLGISV-DSPFSL 76 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh--CCCEEEEecC-CCHHHH
Confidence 78888887 99999999999999999999974 3578888887 544433
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.21 E-value=4e-06 Score=60.38 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=44.7
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChhhhhhHH-HH--HHHHHHcCCCCCCEEEEEEEcc
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQ-GF--SKLCKGSGDQEAPVIFLKHNGL 161 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P-~~--~~la~~~~~~~~~v~~~~VD~~ 161 (170)
.+|++++..++..+|+++|+|+++||++|+.|.. +| .++.+.+.+ +.+++++|++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~ 61 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDID 61 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCC
Confidence 3678888888888999999999999999999976 34 556666654 6899999983
No 119
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.12 E-value=2.8e-06 Score=66.70 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=37.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.|| ++||++|+...|.+.++.+++.+. ++.++.|.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~ 73 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVST 73 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeC
Confidence 6889999999 999999999999999999999752 466777776
No 120
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.12 E-value=2.8e-06 Score=65.55 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.++++||+|| +.||++|....|.+.++.+++.+ .++.++.|.. +.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~--~~v~vv~Is~-d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK--LNAEVLGVST-DS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEec-CC
Confidence 5789999999 89999999999999999999975 3577777777 44
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.11 E-value=3.3e-06 Score=62.10 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.++++||.|| +.||+.|+...|.+.++..++.+ .++.++.|.. +....+.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vv~is~-d~~~~~~ 72 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA--LGAVVIGVSP-DSVESHA 72 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcC-CCHHHHH
Confidence 5889999999 58999999999999999999964 3577888877 5544443
No 122
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.09 E-value=3.9e-06 Score=61.64 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
.++++||.|| +.||++|+...|.+.++..+++. ..+.|+.|.. +....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~~~~i~is~-d~~~~ 69 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK--GGAEVLGVSV-DSPFS 69 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEeC-CCHHH
Confidence 5889999999 78999999999999999999953 3578888887 54433
No 123
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=7.1e-06 Score=66.23 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=58.0
Q ss_pred cceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 95 ~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+.++.....+.+++.+.. +....++|.|+|.|.+.|+...|.|.+|+.+|.. ..+.|++||+ ...++.+
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDi-Grfpd~a 192 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDI-GRFPDVA 192 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceee-ccCcChH
Confidence 456666667888888875 3788999999999999999999999999999975 4799999999 7776654
No 124
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.01 E-value=5.7e-06 Score=62.32 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=40.4
Q ss_pred CCCeEEEEEECC-CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~-WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.++++||.||++ ||+.|+...+.+.++.+.+++ .++.++.|+. +....+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~--~~v~vi~Is~-d~~~~~~ 79 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK--AGVVVLGIST-DKPEKLS 79 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcC-CCHHHHH
Confidence 678999999986 677899999999999999975 3588888887 5555443
No 125
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.99 E-value=1.1e-05 Score=49.02 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.5
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
++.||++||++|+.+.+.+.++ +... .++.++.+|+ +....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~-~~~~~ 41 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDV-DEDPA 41 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEc-CCChH
Confidence 4689999999999999999998 3222 3699999998 55443
No 126
>smart00594 UAS UAS domain.
Probab=97.99 E-value=2e-05 Score=57.78 Aligned_cols=56 Identities=5% Similarity=0.023 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEcc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNGL 161 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~~ 161 (170)
..+|++++..++..+|.++|+|+++||++|+.+.... .++.+.+.. ++++..+|++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~ 71 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVD 71 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCC
Confidence 3478888888877899999999999999999988743 455555543 6899999983
No 127
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.83 E-value=2.1e-05 Score=60.98 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHH-HH--HHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQ-GF--SKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P-~~--~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.|+..-. .+|+++|.++++||++|+.|.- .| .++++.+.. +++-++||. ++.++|.
T Consensus 27 ~ea~~~Ak~----e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDr-ee~Pdid 87 (163)
T PF03190_consen 27 EEALEKAKK----ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDR-EERPDID 87 (163)
T ss_dssp HHHHHHHHH----HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEET-TT-HHHH
T ss_pred HHHHHHHHh----cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecc-ccCccHH
Confidence 456666655 8999999999999999999886 33 455666643 699999999 8888764
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.76 E-value=2.8e-05 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEECCCChhhhhhHHHHHHHHH
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
++.||++||++|+++.+.+.++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~ 25 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA 25 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 457999999999999999876643
No 129
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.76 E-value=3.5e-05 Score=60.87 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=39.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.+++||+.|| +.||+.|....+.|.++.+++.+ .++.++.|+. |..
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~--~g~~vigIS~-D~~ 76 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQK--LGVDVYSVST-DTH 76 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh--CCCEEEEEeC-CCH
Confidence 5789999999 99999999999999999999965 2577888887 543
No 130
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.75 E-value=2.3e-05 Score=52.65 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=28.1
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++.|+++||++|+.+.+.+.++. +.. .+.++.||.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~ 35 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQ 35 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeC
Confidence 46799999999999999999887 322 367777776
No 131
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.73 E-value=4.9e-05 Score=49.16 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=27.5
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
+..||++||++|+++.+.+.+. ++.+..+|+ +.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi-~~~~~ 37 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDV-EKDSA 37 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEec-cCCHH
Confidence 4569999999999999888651 367788888 55443
No 132
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.69 E-value=0.00021 Score=52.74 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECC-------CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRT-------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~-------WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.-++|.+.+.....++++++|.|+++ ||+.|++..|.+++.-...++ +..++.|.+
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~V 66 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEV 66 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE-
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEc
Confidence 46788888876555789999999865 999999999999998888654 688888877
No 133
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0003 Score=51.82 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccCCCeEEEEEEC--------CCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 103 DAEFFKILEKSKETGSLVVVDFYR--------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~FyA--------~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
.+.|++.+.+.. +++.++|.|+| +||+-|.+-.|++.+.-+..+. ++.|+.|++ ..-+
T Consensus 12 ~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~V-G~rp 77 (128)
T KOG3425|consen 12 YESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYV-GNRP 77 (128)
T ss_pred HHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEe-cCCC
Confidence 678888887763 56669999986 6999999999999999997665 799999998 5543
No 134
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.57 E-value=7.9e-05 Score=59.30 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=35.0
Q ss_pred CCCeEE-EEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVV-VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vl-V~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++.++ +.||++||+.|....+.+.++.+++++. ++.++.|.+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~ 69 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSV 69 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeC
Confidence 456554 5789999999999999999999999752 577777777
No 135
>PRK15000 peroxidase; Provisional
Probab=97.56 E-value=9.6e-05 Score=58.85 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=37.7
Q ss_pred CCCeEEEEEECC-CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~-WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.||+. ||+.|+...|.|.++.+++++ .++.++.|.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~--~g~~vigvS~ 76 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK--RGVEVVGVSF 76 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEC
Confidence 578999999995 999999999999999999975 2577888887
No 136
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.3e-05 Score=61.74 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=50.3
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
..+...+.| ... .++.+++.|||+||.+|++|..+++.+++..+ ++.++++++ ++.+++++
T Consensus 4 ~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a-~~~~eis~ 64 (227)
T KOG0911|consen 4 QFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEA-EEFPEISN 64 (227)
T ss_pred eeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehh-hhhhHHHH
Confidence 344556667 332 78999999999999999999999999999884 489999999 88887753
No 137
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.47 E-value=0.00011 Score=59.16 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=37.7
Q ss_pred CCCe-EEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~-vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.++. ||+.|||+||++|....+.|.++..++.+. ++.++.|.+ |..
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~-D~~ 73 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSV-DQV 73 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeC-CCH
Confidence 4555 578999999999999999999999999752 577888888 543
No 138
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.46 E-value=2.8e-05 Score=63.25 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=49.0
Q ss_pred eeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 99 ~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
..++++|+.+.+. .-++++|+||||+.|+.+.|.|+.++.--.+ -.+.+++||+ ..++-|.
T Consensus 27 ~~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDv-t~npgLs 87 (248)
T KOG0913|consen 27 TRIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDV-TTNPGLS 87 (248)
T ss_pred EEecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEE-Eeccccc
Confidence 3456788888774 2467789999999999999999999987665 4799999999 6666543
No 139
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.46 E-value=0.00012 Score=58.25 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=35.4
Q ss_pred eEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 119 ~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
++|+.|||+||+.|....+.+.++.+++++. ++.++.|.+ +.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~-D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSV-DS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEEC-CC
Confidence 5677899999999999999999999999752 577888887 44
No 140
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.37 E-value=0.0003 Score=48.04 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=32.3
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
++.|+.+||++|+.....++++..++. ++.+..+|+ ++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi-~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDI-HA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEEC-CC
Confidence 567999999999999999999998764 377888888 44
No 141
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.33 E-value=0.00028 Score=58.65 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++.+|+.|| +.||++|....|.|.++.+++++. ++.++.|.+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~ 140 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSV 140 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEC
Confidence 4667777777 999999999999999999999752 467777777
No 142
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.32 E-value=0.00022 Score=57.42 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=35.1
Q ss_pred CCCe-EEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~-vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++. ||+.||++||+.|....+.|.+++.+++.. ++.++.|++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~ 75 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSV 75 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEEC
Confidence 3554 555889999999999999999999999753 467777777
No 143
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.29 E-value=0.0007 Score=49.84 Aligned_cols=41 Identities=29% Similarity=0.568 Sum_probs=32.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
..+++|+.|+.++|++|+.+.|.+.++...+++ +.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEEeC
Confidence 578999999999999999999999998877643 44444443
No 144
>PRK13189 peroxiredoxin; Provisional
Probab=97.26 E-value=0.00031 Score=56.83 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=35.4
Q ss_pred CCC-eEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k-~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++ ++|+.||++||+.|....+.|.+++.++++. ++.++.|.+
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~ 77 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSI 77 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 455 5667889999999999999999999999752 466777777
No 145
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.17 E-value=0.00053 Score=54.24 Aligned_cols=43 Identities=23% Similarity=0.157 Sum_probs=36.7
Q ss_pred CCCeEEEEEEC-CCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA-~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.||+ .||++|....+.+.++.+++.+. ++.++.|++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~ 78 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSM 78 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeC
Confidence 57899999995 88999999999999999999753 577777777
No 146
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.98 E-value=0.0024 Score=53.22 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=48.5
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.+..+.+++.|-+++... ..+..|||.||-+-++.|+.|...|..||.+|.. ++|++|.+ +.
T Consensus 126 ~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a-~~ 187 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRA-SK 187 (265)
T ss_dssp SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEE-CG
T ss_pred eEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEeh-hc
Confidence 466777778898888653 2467899999999999999999999999999986 99999998 54
No 147
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.97 E-value=0.0018 Score=48.22 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
..+..++-|..+|||-|++.-|.+.++++..++ +.+--+.. |++.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~r-d~~~e 85 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILR-DENKE 85 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-H-HHHHH
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEe-cCChh
Confidence 566677779999999999999999999998753 44444444 44444
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.90 E-value=0.0015 Score=41.97 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=24.7
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
++.|+++||++|+.+.+.+.+. ++.+..+|+ +..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i-~~~ 35 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDV-DED 35 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeC-CCC
Confidence 4679999999999998877652 244556676 443
No 149
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.69 E-value=0.013 Score=43.87 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=52.8
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
..+.+.-..++++... .+++|++-|.-.|-+.|.+|...+.+++++.+. =.+|+.||+ ++-++.
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi-~~Vpdf 66 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDI-DEVPDF 66 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEET-TTTHCC
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEc-ccchhh
Confidence 3456788888888764 899999999999999999999999999999986 478999999 766554
No 150
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.66 E-value=0.0028 Score=42.24 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++.|+++||++|+.+.+.+.++... ..++.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~ 34 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQ 34 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeC
Confidence 4669999999999999999887663 44666666
No 151
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0075 Score=44.93 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=54.4
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
..+.+....++++... ..++|+|-|.-.|-+-|.+|...+.+.++...+ =..++-+|+ ++-++..+
T Consensus 6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~Iylvdi-deV~~~~~ 71 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDI-DEVPDFVK 71 (142)
T ss_pred cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEec-chhhhhhh
Confidence 3456677888888753 899999999999999999999999999999986 367888999 76665543
No 152
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.63 E-value=0.006 Score=49.20 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 107 ~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
+.+|... .++.-|+.||.+.|+.|..+.|++..++++|+ +.+..|++
T Consensus 112 ~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~ 158 (215)
T PF13728_consen 112 DKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSL 158 (215)
T ss_pred HHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEec
Confidence 3444443 68888999999999999999999999999995 44555554
No 153
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.63 E-value=0.0029 Score=43.42 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=29.0
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++.|+.+||++|++....++++...+. .+.+..+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi 37 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDI 37 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEEC
Confidence 567999999999999999988876553 366777787
No 154
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.60 E-value=0.0021 Score=40.95 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.8
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
++.|+++||++|+.+.+.+.+.. +.+..+|+ +.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di-~~~~ 36 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDI-LEDG 36 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEEC-CCCH
Confidence 45699999999999998887654 34556677 4443
No 155
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.51 E-value=0.013 Score=46.63 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=55.8
Q ss_pred cceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 95 ~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.....+.++.+|-+.+. ...-||+.||-|--..|+.|...++.||+.+-+ ..|++||+ ...+-++
T Consensus 66 G~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvna-e~~PFlv 130 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNA-EKAPFLV 130 (211)
T ss_pred ceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEec-ccCceee
Confidence 34667778889988887 678889999999999999999999999999875 89999999 7776554
No 156
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.42 E-value=0.0064 Score=46.12 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=34.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+++.|+.|+.+.|++|+.+.+.+.++.+++++ ++.+..+-+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcCC
Confidence 578999999999999999999999999999865 455544443
No 157
>PHA03050 glutaredoxin; Provisional
Probab=96.36 E-value=0.0077 Score=43.43 Aligned_cols=26 Identities=19% Similarity=0.306 Sum_probs=20.7
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~ 146 (170)
++.|..+|||+|++....|.++.-.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~ 40 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR 40 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc
Confidence 44599999999999998887775533
No 158
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.35 E-value=0.00057 Score=49.55 Aligned_cols=43 Identities=7% Similarity=-0.209 Sum_probs=34.7
Q ss_pred cccccccC-CcccEEEeeecCcccccccccccccCCC--CCCCCcccc
Q 030873 16 RNADGKFS-SKVPCMVTSLHRDRTCAKSFCMRTRNRI--PFESKSTGL 60 (170)
Q Consensus 16 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~l 60 (170)
+++|++|| |||+||++|+.... ++..+|| ++... .|.+.+.++
T Consensus 41 ~~vAk~fk~gki~Fv~~D~~~~~-~~l~~fg-l~~~~~~~P~~~i~~~ 86 (111)
T cd03073 41 LKVAKDFPDRKLNFAVADKEDFS-HELEEFG-LDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHCcCCeEEEEEEcHHHHH-HHHHHcC-CCcccCCCCEEEEEeC
Confidence 46899999 79999999999665 4778888 67656 888777664
No 159
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.26 E-value=0.00062 Score=49.27 Aligned_cols=45 Identities=2% Similarity=-0.176 Sum_probs=36.6
Q ss_pred cccccc---cCCcccEEEeeecCcccccccccccccCCCCCCCCcccccc
Q 030873 16 RNADGK---FSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS 62 (170)
Q Consensus 16 ~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 62 (170)
+..|++ |||||+||++|++.+. ++...|| ++....|.+.+.+++-
T Consensus 37 ~~vAk~~~~~kgki~Fv~~d~~~~~-~~~~~fg-l~~~~~P~i~i~~~~~ 84 (111)
T cd03072 37 QAVARQLISEKGAINFLTADGDKFR-HPLLHLG-KTPADLPVIAIDSFRH 84 (111)
T ss_pred HHHHHHHHhcCceEEEEEEechHhh-hHHHHcC-CCHhHCCEEEEEcchh
Confidence 457888 9999999999999775 4788888 6777889888887653
No 160
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.22 E-value=0.0085 Score=43.74 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHhhccCCCeEEEEEECC----CChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEcc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGL 161 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~----WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~ 161 (170)
+|++++..++...|.++|++|++ ||..|+.... =+++.+-+.. ++++...|++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~---~fv~w~~dv~ 61 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT---RMLFWACSVA 61 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc---CEEEEEEecC
Confidence 67888888888999999999999 9999976542 1334444433 6899999983
No 161
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.02 E-value=0.025 Score=42.05 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=36.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
..+++|+.|+..-|++|+.+.+.+.++.+++-+ .+++.+..+++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEc
Confidence 578999999999999999999999999999832 23788887776
No 162
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.77 E-value=0.033 Score=46.05 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++.-|+.||.+-|+.|.++.|++..++++|+= .+..+.+|.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG 183 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDG 183 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCC
Confidence 466889999999999999999999999999963 455555554
No 163
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.73 E-value=0.021 Score=38.06 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=28.7
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
++.|+.+.|++|..+.|.+.++.....+ ++.+..+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEecc
Confidence 4679999999999999999999865554 455555543
No 164
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.49 E-value=0.072 Score=38.43 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=46.3
Q ss_pred eeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 99 ~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.+.+.++|++++..+ ..++++|.=..+.||-..+....|++......+ .+.++.+|+ -+..+++
T Consensus 3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v-~~~R~vS 66 (105)
T PF11009_consen 3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDV-IEYRPVS 66 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEG-GGGHHHH
T ss_pred ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEE-EeCchhH
Confidence 457789999999975 689999988999999999999999999998865 488999998 7766654
No 165
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.47 E-value=0.028 Score=35.50 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=25.0
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
++.|+.+||++|++....|++. ++.+-.+|+ +..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv-~~~ 34 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDV-DED 34 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEG-GGS
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEccc-ccc
Confidence 4679999999999998777422 366777787 444
No 166
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.42 E-value=0.055 Score=44.92 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++.-|+.||..-|+.|.++.|++..++++|+= .+..+.+|.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi---~v~~VS~DG 190 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI---SVIPISVDG 190 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCC
Confidence 566899999999999999999999999999963 344444443
No 167
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.026 Score=52.32 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHH-H--HHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~-~--~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+++.|++.-. .+|||||....+||-+|..|... | .++|+.+.. .++-+|||. ++-+++-
T Consensus 32 ~~eAf~~A~~----edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDR-EERPDvD 93 (667)
T COG1331 32 GEEAFAKAKE----EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDR-EERPDVD 93 (667)
T ss_pred CHHHHHHHHH----hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeECh-hhccCHH
Confidence 4678888777 89999999999999999998863 2 567777644 699999999 8877764
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.30 E-value=0.025 Score=38.54 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=26.6
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
+..|..+||++|++.+-.|++. ++.|-.+|+ ++.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi-~~~~~ 38 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINV-DRVPE 38 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEEC-CCCHH
Confidence 4568999999999988777541 366777888 65554
No 169
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.17 E-value=0.016 Score=40.95 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=17.8
Q ss_pred EEEEECCCChhhhhhHHHHHHH
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~l 142 (170)
++.|..|||++|++.+..|.++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3349999999999998877654
No 170
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.84 E-value=0.039 Score=43.81 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEc
Q 030873 117 GSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 117 ~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~ 160 (170)
+++.||+|+.--|+||+.+.|.+ ..+.+.+.+ ++.++.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEecc
Confidence 45679999999999999999976 788888875 455555544
No 171
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.73 E-value=0.087 Score=35.10 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=30.1
Q ss_pred EEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
|.+++++|+.|..+...+++++..+. +.+-.+|+ .+.+++.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~~~~~ 43 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDFEEIE 43 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCHHHHH
Confidence 34478889999999999999999873 45555566 5555543
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.61 E-value=0.062 Score=35.04 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=24.5
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
++.|+.+||++|+.....|++. ++.+-.+|+ +..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i-~~~ 35 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDV-DGD 35 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEEC-CCC
Confidence 4568999999999998777653 245556677 443
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.58 E-value=0.08 Score=41.47 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHH
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~ 141 (170)
.++..++.|..+.|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 57899999999999999999998877
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.55 E-value=0.063 Score=35.20 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.0
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
++-|+.+||+.|++..-.|++. ++.+-.+|+ ++.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di-~~~~ 37 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINI-DIFP 37 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEEC-CCCH
Confidence 4558999999999998777752 245556677 5443
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.52 E-value=0.027 Score=37.83 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.2
Q ss_pred CeEEEEEECCCChhhhhhHHHHHH
Q 030873 118 SLVVVDFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 118 k~vlV~FyA~WCg~Ck~l~P~~~~ 141 (170)
+.-++.|+.+||++|++....|++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE 30 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH
Confidence 334556999999999999988864
No 176
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.29 E-value=0.053 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=25.2
Q ss_pred EEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
..|..+||++|++....|++. ++.+-.+|+ +++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di-~~~~~ 36 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINI-DEQPE 36 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEEC-CCCHH
Confidence 458899999999999888642 355666777 55543
No 177
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.17 E-value=0.013 Score=43.53 Aligned_cols=44 Identities=9% Similarity=-0.096 Sum_probs=35.4
Q ss_pred cccccccCCc-ccEEEeeecCcccccccccccccCCCCCCCCccccc
Q 030873 16 RNADGKFSSK-VPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLA 61 (170)
Q Consensus 16 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 61 (170)
+++|++|||| +.|+.+|+..... +.+.|+ ++....|.+.+.+++
T Consensus 47 ~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fg-l~~~~~P~v~i~~~~ 91 (130)
T cd02983 47 KSVAEKFKKKPWGWLWTEAGAQLD-LEEALN-IGGFGYPAMVAINFR 91 (130)
T ss_pred HHHHHHhcCCcEEEEEEeCcccHH-HHHHcC-CCccCCCEEEEEecc
Confidence 5789999999 9999999997653 778788 666788877766654
No 178
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.12 Score=37.20 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
..++.+. ..+|+| |.-+||+.|+++.-.|.+ +. ....++.+|-
T Consensus 6 ~v~~~i~-----~~~VVi-fSKs~C~~c~~~k~ll~~----~~---v~~~vvELD~ 48 (104)
T KOG1752|consen 6 KVRKMIS-----ENPVVI-FSKSSCPYCHRAKELLSD----LG---VNPKVVELDE 48 (104)
T ss_pred HHHHHhh-----cCCEEE-EECCcCchHHHHHHHHHh----CC---CCCEEEEccC
Confidence 4555664 344443 999999999998877766 32 2466777776
No 179
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.77 E-value=0.2 Score=45.04 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVD 169 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~ 169 (170)
..+.-+-.|+.++|++|......+++++...+ .+.+-.||. .+++++++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~-~~~~~~~~ 163 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDG-ALFQDEVE 163 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEc-hhCHhHHH
Confidence 34555778999999999999999999999755 588999999 88887753
No 180
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.58 E-value=0.092 Score=39.88 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=32.6
Q ss_pred CCCeEEEEEECCCChhhhhh-HHHHHHHHHHcCCCCCCE-EEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYI-EQGFSKLCKGSGDQEAPV-IFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l-~P~~~~la~~~~~~~~~v-~~~~VD~ 160 (170)
.+.+||+.|.+.||+.|... .+.|.+..+++... .+ .++.|..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~ 73 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSV 73 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEEC
Confidence 34566666679999999998 99999999998652 34 3666665
No 181
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.58 E-value=0.04 Score=36.58 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEECCCChhhhhhHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~l 142 (170)
+.|+.+||++|+.....+++.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc
Confidence 468899999999999888754
No 182
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.50 E-value=0.098 Score=36.76 Aligned_cols=31 Identities=23% Similarity=0.006 Sum_probs=21.1
Q ss_pred CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 126 A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
+|||++|++....|.++. +.+..+|+ +++++
T Consensus 24 ~~~Cp~C~~ak~lL~~~~---------i~~~~~di-~~~~~ 54 (97)
T TIGR00365 24 FPQCGFSARAVQILKACG---------VPFAYVNV-LEDPE 54 (97)
T ss_pred CCCCchHHHHHHHHHHcC---------CCEEEEEC-CCCHH
Confidence 499999999987776643 33555677 44443
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.14 E-value=0.33 Score=44.18 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCeE-EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 117 GSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 117 ~k~v-lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++++ +--|.++||++|......+.+++...+ ++..-.+|+ .+.++++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~-~~~~~~~ 522 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDV-SHFPDLK 522 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEEC-cccHHHH
Confidence 4555 445689999999999999999999875 388888899 7777776
No 184
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=92.87 E-value=0.56 Score=31.89 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=39.6
Q ss_pred eeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEE
Q 030873 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (170)
Q Consensus 99 ~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD 159 (170)
.+.+.+.+++++. .+++++|-|+..+|+ .+...|.++|..+++ .+.|+.+.
T Consensus 3 ~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~ 53 (97)
T cd02981 3 ELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS 53 (97)
T ss_pred ecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC
Confidence 4456667777776 788999999999988 567789999999875 47776655
No 185
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=92.47 E-value=0.3 Score=36.87 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=49.1
Q ss_pred eeeCCHHHHHHHHHhhccCCCe-EEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 98 REFKTDAEFFKILEKSKETGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~-vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
...+|.+++..+.. .+.+ +++.|+..-......+...+.++|+.+++ ++.|+.+|+ +..+.+
T Consensus 79 v~~~t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~~f~~~d~-~~~~~~ 141 (184)
T PF13848_consen 79 VPELTPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG---KINFVYVDA-DDFPRL 141 (184)
T ss_dssp CEEESTTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT---TSEEEEEET-TTTHHH
T ss_pred ccccchhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC---eEEEEEeeh-HHhHHH
Confidence 33467889998886 5544 88888877788889999999999999986 699999999 654443
No 186
>PTZ00062 glutaredoxin; Provisional
Probab=92.12 E-value=0.3 Score=39.13 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=29.0
Q ss_pred HHHHHHHhhccCCCeEEEEE---ECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccc
Q 030873 105 EFFKILEKSKETGSLVVVDF---YRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNL 166 (170)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~F---yA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~ 166 (170)
-.++++. .+++||..= ++||||.|+++...|.+.. +.+..+|+ ++.++
T Consensus 105 ~v~~li~----~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~---------i~y~~~DI-~~d~~ 155 (204)
T PTZ00062 105 KIERLIR----NHKILLFMKGSKTFPFCRFSNAVVNMLNSSG---------VKYETYNI-FEDPD 155 (204)
T ss_pred HHHHHHh----cCCEEEEEccCCCCCCChhHHHHHHHHHHcC---------CCEEEEEc-CCCHH
Confidence 3445554 455554333 4489999999987777432 44556777 44443
No 187
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.01 E-value=0.21 Score=40.59 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHH
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
+++.+++.|.-|-||+|+++.+.+.++.+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 57889999999999999999998887644
No 188
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.56 E-value=0.14 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.7
Q ss_pred EEEEECCCChhhhhhHHHHHH
Q 030873 121 VVDFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~ 141 (170)
++.|..+||+.|++....+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456999999999999877774
No 189
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.42 E-value=0.17 Score=34.80 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.0
Q ss_pred CCChhhhhhHHHHHHHH
Q 030873 127 TSCGSCKYIEQGFSKLC 143 (170)
Q Consensus 127 ~WCg~Ck~l~P~~~~la 143 (170)
|||++|+.....|.+..
T Consensus 21 ~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 21 PRCGFSRKVVQILNQLG 37 (90)
T ss_pred CCCcHHHHHHHHHHHcC
Confidence 89999999887776653
No 190
>PRK10824 glutaredoxin-4; Provisional
Probab=91.25 E-value=0.25 Score=36.15 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.4
Q ss_pred CCChhhhhhHHHHHHHH
Q 030873 127 TSCGSCKYIEQGFSKLC 143 (170)
Q Consensus 127 ~WCg~Ck~l~P~~~~la 143 (170)
||||+|++....|.++.
T Consensus 28 p~Cpyc~~ak~lL~~~~ 44 (115)
T PRK10824 28 PSCGFSAQAVQALSACG 44 (115)
T ss_pred CCCchHHHHHHHHHHcC
Confidence 69999999998887664
No 191
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.92 E-value=1.2 Score=36.01 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=49.1
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccC
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLS 162 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d 162 (170)
|..+ +..+|-.-|.++ ..+-.|||..|...-+-|+.+...++.||.+|++ ++|+++=.|+
T Consensus 93 V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~ 152 (240)
T KOG3170|consen 93 VFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATT 152 (240)
T ss_pred eeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccccc
Confidence 5554 455666666655 3788999999999999999999999999999986 8899887644
No 192
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.3 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.9
Q ss_pred EEEEECCCChhhhhhHHHHH
Q 030873 121 VVDFYRTSCGSCKYIEQGFS 140 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~ 140 (170)
++.|.-+||++|++....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45689999999999887776
No 193
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=89.85 E-value=1.1 Score=33.47 Aligned_cols=61 Identities=8% Similarity=-0.109 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEE--CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFY--RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~Fy--A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++..+++..+. .....+|.|- .--++.+--..=++++++++|.+ .++.|++||+ |++++++
T Consensus 22 ~~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDi-D~~~~LA 84 (132)
T PRK11509 22 VSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADL-EQSEAIG 84 (132)
T ss_pred cccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEEC-CCCHHHH
Confidence 34567888887 4555555443 33567777888899999999964 3599999999 9988876
No 194
>PRK10638 glutaredoxin 3; Provisional
Probab=89.64 E-value=0.26 Score=33.16 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=24.2
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~ 165 (170)
++.|..+||++|+...-.+++.. +.+..+|+ ++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g---------i~y~~~dv-~~~~ 38 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG---------VSFQEIPI-DGDA 38 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CCcEEEEC-CCCH
Confidence 44588899999999987777542 33455676 4443
No 195
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.91 E-value=0.64 Score=38.21 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=44.5
Q ss_pred cceeeeCCHH--HHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 95 ECVREFKTDA--EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 95 ~~v~~~~t~~--~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.+|+.+.... ++-+... .++|+||+|.+-.|||=+.=.+.|++++++|++ .+.|+.|.+
T Consensus 82 s~vv~l~g~~~~~ildf~~----g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d---~adFl~VYI 142 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAK----GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD---VADFLIVYI 142 (237)
T ss_pred CceEeeCCCcceeHHHhcc----CCCCeEEEcccccchHHHHHHHHHHHHHHHhhh---hhheehhhH
Confidence 4555543222 3444554 799999999999999999999999999999987 355666666
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.63 E-value=1.4 Score=39.61 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
.++.-+--|+.+-|++|......+.+++...+ .+..-.+|. .+.++++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~-~~~~~~~ 163 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDG-ALFQDEV 163 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEc-hhCHHHH
Confidence 34555778999999999999999999998865 488888998 7777765
No 197
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.02 E-value=0.7 Score=37.97 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHH
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
..+.+|+.|.-|-|++|+++.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 57788999999999999999988777654
No 198
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=0.86 Score=35.15 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~Fy-A~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.++.||++|| ..|++-|...+-.|.+...++... +..++.|.. |..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~-Ds~ 75 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISP-DSP 75 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeC-CCH
Confidence 6789999999 789999999999999999999752 566777776 443
No 199
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=87.39 E-value=0.094 Score=36.08 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=30.4
Q ss_pred cccccccCCcccEEEeeecCcccccccccccccCCCCCCCCccc
Q 030873 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTG 59 (170)
Q Consensus 16 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 59 (170)
+++|++|+|++.|+.+|++... ++...++ ++....|++-+..
T Consensus 35 ~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~-i~~~~~P~~~~~~ 76 (103)
T cd02982 35 KEVAKKFKGKLLFVVVDADDFG-RHLEYFG-LKEEDLPVIAIIN 76 (103)
T ss_pred HHHHHHhCCeEEEEEEchHhhH-HHHHHcC-CChhhCCEEEEEe
Confidence 5689999999999999999754 4555566 4545677544433
No 200
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=87.10 E-value=1.7 Score=33.48 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=33.9
Q ss_pred CCCeEEEEEECCCC-hhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WC-g~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.|.=+-| ..|-.+...+.++.+.+.....++.++.|.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 79999999988888 6788888888888877764334677777776
No 201
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=2.5 Score=32.90 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCCeEEEEEECCCChhhhhhHHHH---HHHHHHcCCCCCCEEEEEEEccCCc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~---~~la~~~~~~~~~v~~~~VD~~d~~ 164 (170)
.++..++.|-.+-|..|-++...+ .++.+-+.. .+.++.+|+++..
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~sk 89 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSK 89 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCc
Confidence 799999999999999999998866 556666655 6899999985443
No 202
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=83.41 E-value=4.1 Score=35.45 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=41.3
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhH------HHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIE------QGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~------P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
+..++..||.+++. +...++|.||.|--+ -+... -.+-+|+.+.-. ...+.|+.||. .+...++
T Consensus 36 Vi~LneKNfk~~lK----kyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~-~Kd~klA 105 (383)
T PF01216_consen 36 VIDLNEKNFKRALK----KYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDS-KKDAKLA 105 (383)
T ss_dssp CEEE-TTTHHHHHH----H-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEET-TTTHHHH
T ss_pred eEEcchhHHHHHHH----hhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEecc-HHHHHHH
Confidence 33367999999998 788999999999743 33332 223455555544 45799999999 7766554
No 203
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.35 E-value=1.4 Score=29.65 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=31.8
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
|+.|..+-|+-|-.....+.++.... .+.+-.||+ ++++++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI-~~d~~l 42 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDI-DEDPEL 42 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEET-TTTHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEEC-CCCHHH
Confidence 56799999999999998888765543 488999999 666654
No 204
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=82.73 E-value=3.3 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHH---cCCCCCCEEEEEEEccCCcc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG---SGDQEAPVIFLKHNGLSEFN 165 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~---~~~~~~~v~~~~VD~~d~~~ 165 (170)
.+.++++.+.. .+.+..+.|+. -..-..+.+.+.++|++ +++ ++.|+.+|. ++..
T Consensus 4 ~t~e~~~~~~~----~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~-~~~~ 61 (111)
T cd03072 4 ITFENAEELTE----EGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADG-DKFR 61 (111)
T ss_pred cccccHHHHhc----CCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEec-hHhh
Confidence 45677776665 55555555662 22347789999999999 876 799999999 6543
No 205
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=81.98 E-value=8 Score=27.94 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=41.7
Q ss_pred eeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCC
Q 030873 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSE 163 (170)
Q Consensus 99 ~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~ 163 (170)
.+.+..+|.+++. ....|||-|..+-=..- .....+.++|+..++ .-.++.||| ..
T Consensus 5 ~i~d~KdfKKLLR----Tr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG---~gT~~~vdC-gd 60 (112)
T cd03067 5 DISDHKDFKKLLR----TRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKG---QGTIAWIDC-GD 60 (112)
T ss_pred cccchHHHHHHHh----hcCcEEEEEecchhhHH-HHHHHHHHHHHHhcC---ceeEEEEec-CC
Confidence 3456789999998 78888887776643333 334488899999887 578999999 43
No 206
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.08 E-value=1.5 Score=31.27 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=16.4
Q ss_pred EEEECCCChhhhhhHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~l 142 (170)
..|+.|||+.||.....+++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 458999999999977666543
No 207
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=80.14 E-value=1.1 Score=31.51 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=16.8
Q ss_pred EEEECCCChhhhhhHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~l 142 (170)
..|+.|+|+.|+.....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 458999999999987666653
No 208
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=79.82 E-value=10 Score=27.74 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccccC
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLVDW 170 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la~~ 170 (170)
+.++.-++-.+. -+...+|-|--+--+--.++.+.+.++|+.+.+ +.++.|+.||- |+.+-+.+|
T Consensus 7 ~~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDP-D~FPllv~y 71 (120)
T cd03074 7 KPENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDP-DDFPLLVPY 71 (120)
T ss_pred cHHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECC-ccCchhhHH
Confidence 344555555442 345667778888888999999999999999986 77899999999 888776543
No 209
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.84 E-value=4.2 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=26.0
Q ss_pred CeEEEEEECCCChhhhhhHHHHHHHHHHcC
Q 030873 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (170)
Q Consensus 118 k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~ 147 (170)
|.+++-|.-|-|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 467889999999999999999988877773
No 210
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=73.65 E-value=1.1 Score=33.81 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=31.5
Q ss_pred cccccccCCcccEEEeeecCcccccccccccccCCCCCCCCccc
Q 030873 16 RNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTG 59 (170)
Q Consensus 16 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 59 (170)
+.+|++++|++.|+.+|..... +....++ ++....|.+.+..
T Consensus 118 ~~~a~~~~~~~~f~~~d~~~~~-~~~~~~~-i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 118 QDIAKKFKGKINFVYVDADDFP-RLLKYFG-IDEDDLPALVIFD 159 (184)
T ss_dssp HHHHHCTTTTSEEEEEETTTTH-HHHHHTT-TTTSSSSEEEEEE
T ss_pred HHHHHhcCCeEEEEEeehHHhH-HHHHHcC-CCCccCCEEEEEE
Confidence 4689999999999999999543 4555666 5777778655554
No 211
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=72.13 E-value=6.7 Score=28.12 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEEC---CCChhhhhhHHHHHHHHHHcC-CCCCCEEEEEEEccCCc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNGLSEF 164 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA---~WCg~Ck~l~P~~~~la~~~~-~~~~~v~~~~VD~~d~~ 164 (170)
|.++..... ..+.+++.+-. +--..-..+...+.++|+.++ + ++.|+.+|. ++.
T Consensus 5 ~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~-~~~ 62 (111)
T cd03073 5 TKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADK-EDF 62 (111)
T ss_pred ccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcH-HHH
Confidence 455555553 34445554322 233444678899999999998 5 699999998 544
No 212
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=70.56 E-value=5 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~ 146 (170)
+..|+.|||+.|++....+++..-.|
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~ 27 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPF 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 44688999999999887777665544
No 213
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=70.39 E-value=3.1 Score=26.65 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=16.4
Q ss_pred EEECCCChhhhhhHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
.|+.+||+.|++..-.+.+..-
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl 24 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI 24 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC
Confidence 4789999999998766654443
No 214
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=69.71 E-value=6.8 Score=28.07 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=21.2
Q ss_pred EEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
-|+.++|+.|++....+++. ++.+-.+|+
T Consensus 3 iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi 31 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEAN---------GIEYQFIDI 31 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHc---------CCceEEEec
Confidence 48999999999988666652 245666676
No 215
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=69.68 E-value=4.5 Score=28.86 Aligned_cols=19 Identities=11% Similarity=0.411 Sum_probs=15.7
Q ss_pred EEECCCChhhhhhHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~ 141 (170)
-|+.|+|+.|++....+++
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 5889999999998766654
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.37 E-value=9.6 Score=30.42 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCC
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~ 148 (170)
..+++++.|.-.-|++|+...|.+.+.....+.
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 348899999999999999988888886665554
No 217
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=68.23 E-value=11 Score=31.13 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCC-CCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-EAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~-~~~v~~~~VD~ 160 (170)
.+.++||-+-..+|..|..-+..++.|..++... ..+|.|+.||-
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 7899999999999999999889999998877542 34799999996
No 218
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=66.40 E-value=36 Score=24.92 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=41.0
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECC--CChh-h-hhhHHHHHHHHHHcCCCCCC-EEEEEEEccCCccccc
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRT--SCGS-C-KYIEQGFSKLCKGSGDQEAP-VIFLKHNGLSEFNLLV 168 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~--WCg~-C-k~l~P~~~~la~~~~~~~~~-v~~~~VD~~d~~~~la 168 (170)
+..+++.+.|++.-. ..+.-+|-|.-. -|.+ + ..+...+.++|+.|++ + +.|+.+|. ++...+.
T Consensus 4 ~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~-~~~~~~~ 72 (130)
T cd02983 4 IIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEA-GAQLDLE 72 (130)
T ss_pred eEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeC-cccHHHH
Confidence 455565666665554 345555555321 1222 3 4677899999999987 5 99999999 6655443
No 219
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=18 Score=31.12 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=52.2
Q ss_pred cceeeeCCHHHHHHHHHhhccCCCeEEEEEECC----CChhhhhhHHHHHHHHHHcCCC-----CCCEEEEEEEccCCcc
Q 030873 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNGLSEFN 165 (170)
Q Consensus 95 ~~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~----WCg~Ck~l~P~~~~la~~~~~~-----~~~v~~~~VD~~d~~~ 165 (170)
..+.. .+++.|..++.... .+-.++|.|.|. -|.-|+....+|.-++..+... ..++-|..||. ++.+
T Consensus 40 ~~VI~-~n~d~~~~~v~~~p-rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~-~e~p 116 (331)
T KOG2603|consen 40 SGVIR-MNDDKFSKFVRPPP-RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY-DESP 116 (331)
T ss_pred CCeEE-ecCcchhhhccCCC-CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec-cccH
Confidence 34555 45789999998432 455688889875 6999999999999999987532 12678999999 7665
Q ss_pred cc
Q 030873 166 LL 167 (170)
Q Consensus 166 ~l 167 (170)
++
T Consensus 117 ~~ 118 (331)
T KOG2603|consen 117 QV 118 (331)
T ss_pred HH
Confidence 53
No 220
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=63.35 E-value=27 Score=27.76 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCCeEEEEEECCCCh-hhhhhHHHHHHHHHHcC-CCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCG-SCKYIEQGFSKLCKGSG-DQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg-~Ck~l~P~~~~la~~~~-~~~~~v~~~~VD~ 160 (170)
.+++++|.|.=+.|+ -|-.+...+..+.+++. ....++.++.|-+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itv 112 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITV 112 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEE
Confidence 799999999756665 68888888888888776 3334555554444
No 221
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.94 E-value=9.3 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHHc
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~~ 146 (170)
+..|+.|+|+.|+.....+++..-.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~ 27 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDY 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCe
Confidence 45689999999999887776654444
No 222
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=58.97 E-value=6.1 Score=24.86 Aligned_cols=23 Identities=0% Similarity=-0.115 Sum_probs=17.4
Q ss_pred EEECCCChhhhhhHHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
.|+.+||+.|+++.-.+....-.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~ 25 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID 25 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC
Confidence 47789999999988776655433
No 223
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=58.70 E-value=5.6 Score=24.03 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=16.9
Q ss_pred EEECCCChhhhhhHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
.|+.++|+.|++..-.+....-
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i 24 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL 24 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC
Confidence 4788999999988776665543
No 224
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=58.50 E-value=36 Score=27.96 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=50.4
Q ss_pred ceeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 96 ~v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.|.++.+.+.|-+.|.... +.-.++|..|-+--.-|-+|...+.=||..|+- ++|.++-.
T Consensus 139 ~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckiks 198 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKS 198 (273)
T ss_pred eEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeee
Confidence 3788889999999997531 345788899999999999999999999999975 88888765
No 225
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=58.49 E-value=7.7 Score=27.71 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=16.1
Q ss_pred EEEECCCChhhhhhHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~ 141 (170)
..|+.++|+.|++....+++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 35788999999998766665
No 226
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=53.87 E-value=3.6 Score=35.14 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcC
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~ 147 (170)
+...|-+.||+.|||--+...|.+.-....|.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc
Confidence 57788889999999999999999887777775
No 227
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.77 E-value=11 Score=24.27 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.5
Q ss_pred EEEECCCChhhhhhHHHHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
.-|+.+.|+.|++..-.+.+..-.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~ 26 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIP 26 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCc
Confidence 347889999999988666555443
No 228
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=53.71 E-value=56 Score=29.77 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
+.+.+.+.+- .+++.|+.|+.+-|..|..+...++++++. .+ ++.+...|.
T Consensus 355 ~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~---~i~~~~~~~ 405 (555)
T TIGR03143 355 QQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASL-SE---KLNSEAVNR 405 (555)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhc-CC---cEEEEEecc
Confidence 3455666542 567788889999999999999999998854 33 577766665
No 229
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=50.61 E-value=18 Score=26.73 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.4
Q ss_pred EEEEECCCChhhhhhHHHHHHHHHH
Q 030873 121 VVDFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 121 lV~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
+..|+-|+|+.|+.....+++-.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~ 26 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLS 26 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 3457889999999988776655433
No 230
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=49.92 E-value=25 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=27.8
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCC
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~ 148 (170)
.+|+.++...+-||+.|-..+=.+--+-.+|+.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 799999999999999999887666666667765
No 231
>PLN02182 cytidine deaminase
Probab=49.73 E-value=7.9 Score=33.48 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.6
Q ss_pred ECCCChhhhhhHHHH
Q 030873 125 YRTSCGSCKYIEQGF 139 (170)
Q Consensus 125 yA~WCg~Ck~l~P~~ 139 (170)
++| ||+||++.-.|
T Consensus 129 ~sP-CG~CRQfm~Ef 142 (339)
T PLN02182 129 GTP-CGHCLQFLMEM 142 (339)
T ss_pred cCC-CchhHHHHHHh
Confidence 555 99999986544
No 232
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=49.30 E-value=11 Score=23.70 Aligned_cols=23 Identities=0% Similarity=-0.193 Sum_probs=17.1
Q ss_pred EEECCCChhhhhhHHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
-|+.++|+.|++..-.++..+-.
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~ 25 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVS 25 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCc
Confidence 47889999999987666554443
No 233
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=45.36 E-value=12 Score=23.65 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=16.3
Q ss_pred EEECCCChhhhhhHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
-++.++|+.|++..-.+....-
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl 24 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI 24 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC
Confidence 3678999999988766655443
No 234
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=45.13 E-value=16 Score=27.73 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=19.5
Q ss_pred EEEEECC------CChhhhhhHHHHHHHHHHc
Q 030873 121 VVDFYRT------SCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 121 lV~FyA~------WCg~Ck~l~P~~~~la~~~ 146 (170)
+|.|.++ +|++|++.+..|+.+.-.|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~ 33 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKF 33 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcE
Confidence 3446677 8999999998887765544
No 235
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=44.15 E-value=15 Score=23.87 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=16.7
Q ss_pred EEEECCCChhhhhhHHHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
.-++.++|+.|++..-.+.+..-
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi 25 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELEL 25 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCC
Confidence 34677899999998766665543
No 236
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=43.79 E-value=15 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.0
Q ss_pred EEECCCChhhhhhHHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
-|+.++|+.|++..-.+++..-.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~ 25 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLE 25 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCC
Confidence 47899999999877666655443
No 237
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=43.04 E-value=98 Score=22.15 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=35.5
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.=-|+-||.=. -...+++|.++|++ ..+.++.+=+
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~--~gl~ILaFPc 61 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD--KGLEILAFPC 61 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG--GTEEEEEEEB
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc--CCeEEEeeeh
Confidence 789999999999999998 66799999999985 3577777766
No 238
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=39.54 E-value=17 Score=28.53 Aligned_cols=18 Identities=28% Similarity=0.750 Sum_probs=13.6
Q ss_pred EECCCChhhhhhHHHHHHH
Q 030873 124 FYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 124 FyA~WCg~Ck~l~P~~~~l 142 (170)
|-+| ||+||++.-.|.+.
T Consensus 101 f~tP-CG~CRQfl~Ef~~~ 118 (173)
T KOG0833|consen 101 FTTP-CGVCRQFLREFGNA 118 (173)
T ss_pred cCCC-cHHHHHHHHHHhhc
Confidence 5566 99999988766653
No 239
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=38.43 E-value=1.3e+02 Score=20.69 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=33.5
Q ss_pred eeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEE
Q 030873 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (170)
Q Consensus 98 ~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~V 158 (170)
..+.+.+++++++. .++.++|-|+..--. .+...|.++|..+++ ++.|+..
T Consensus 3 ~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~ 53 (104)
T cd03069 3 VELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHT 53 (104)
T ss_pred cccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEE
Confidence 34556778888886 566666666655333 466788888888865 4566543
No 240
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=37.07 E-value=1.5e+02 Score=20.80 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=35.7
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEE
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD 159 (170)
+..+.+.++++.++.. .++.++|-|+..-=+ .+...|.++|..+.+ .+.|+...
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~ 55 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF 55 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC
Confidence 4556678888888862 326666666655433 456778899999865 46775543
No 241
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=34.52 E-value=15 Score=34.12 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHH-HH--HHHHHHcCCCCCCEEEEEEEccCCcccc
Q 030873 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQ-GF--SKLCKGSGDQEAPVIFLKHNGLSEFNLL 167 (170)
Q Consensus 102 t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P-~~--~~la~~~~~~~~~v~~~~VD~~d~~~~l 167 (170)
..+.|++.-. .++++++-..=+-|-+|..|.. .| ++.++.+.+ +++-++||. ++-+++
T Consensus 101 gqeaf~kar~----enkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDR-EERPDV 161 (786)
T KOG2244|consen 101 GQEAFNKARA----ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDR-EERPDV 161 (786)
T ss_pred hHHHHHHHHh----cCCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccCh-hhcCch
Confidence 3577888876 8999999998888999988865 34 336666654 566677777 665554
No 242
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.82 E-value=51 Score=23.62 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=15.4
Q ss_pred EEEECCCChhhhhhHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSK 141 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~ 141 (170)
.-|+-|.|..||.....+++
T Consensus 3 ~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35889999999987755554
No 243
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=33.12 E-value=47 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=17.6
Q ss_pred CeEEEEEECCCChhhhhhHHHHH
Q 030873 118 SLVVVDFYRTSCGSCKYIEQGFS 140 (170)
Q Consensus 118 k~vlV~FyA~WCg~Ck~l~P~~~ 140 (170)
..-++.|+.|.||-|..-...++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk 47 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK 47 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH
Confidence 34566799999999998665555
No 244
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=28.67 E-value=30 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.849 Sum_probs=8.7
Q ss_pred ECCCChhhhhhHH
Q 030873 125 YRTSCGSCKYIEQ 137 (170)
Q Consensus 125 yA~WCg~Ck~l~P 137 (170)
+.| ||.||++.-
T Consensus 85 ~sP-CG~CRQ~i~ 96 (134)
T COG0295 85 VSP-CGACRQVLA 96 (134)
T ss_pred cCC-cHHHHHHHH
Confidence 444 999999653
No 245
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=28.42 E-value=2.5e+02 Score=20.88 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHH-HHcCCCCCCEEEEEEEccC
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNGLS 162 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la-~~~~~~~~~v~~~~VD~~d 162 (170)
+++-+|+++|. ..+.+||.|=... |==.-.-.|.++| +..+. ..++.++.|-+.|
T Consensus 9 LD~~tFdKvi~----kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~-~~dLLvAeVGikD 64 (126)
T PF07912_consen 9 LDELTFDKVIP----KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASAS-SDDLLVAEVGIKD 64 (126)
T ss_dssp ESTTHHHHHGG----GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC--SSEEEEEEECBS
T ss_pred ccceehhheec----cCceEEEEEeccC--CCcchHHHHHHHHHHHhcC-CCceEEEEeCccc
Confidence 45669999998 7899999995433 3333456788888 54444 5679999998843
No 246
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.49 E-value=44 Score=20.72 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=16.7
Q ss_pred EEECCCChhhhhhHHHHHHHHHH
Q 030873 123 DFYRTSCGSCKYIEQGFSKLCKG 145 (170)
Q Consensus 123 ~FyA~WCg~Ck~l~P~~~~la~~ 145 (170)
-|+.++|+.|++..-.+....-.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~ 25 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP 25 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC
Confidence 47789999999887666655433
No 247
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=23.69 E-value=67 Score=20.88 Aligned_cols=20 Identities=40% Similarity=0.786 Sum_probs=13.2
Q ss_pred HHHHHHHHhhccCCCeEEEEEECCCChh
Q 030873 104 AEFFKILEKSKETGSLVVVDFYRTSCGS 131 (170)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~FyA~WCg~ 131 (170)
++|.+.+. .+..|++ ||||.
T Consensus 2 eE~k~~i~----~gg~v~~----pwcg~ 21 (68)
T PF09180_consen 2 EEFKEAIE----KGGFVLV----PWCGD 21 (68)
T ss_dssp HHHHHHHH----TSSEEEE----EES-S
T ss_pred hHHHHHHh----CCCEEEE----EccCC
Confidence 46777774 6667664 88987
No 248
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=23.00 E-value=68 Score=21.36 Aligned_cols=23 Identities=4% Similarity=-0.112 Sum_probs=16.2
Q ss_pred EEEECCCChhhhhhHHHHHHHHH
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCK 144 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~ 144 (170)
..|+.+.|++|++..-.+....-
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~gl 42 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAKNI 42 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHcCC
Confidence 33678889999988766555433
No 249
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=1.9e+02 Score=22.38 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEc
Q 030873 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNG 160 (170)
Q Consensus 116 ~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~ 160 (170)
.++++||.=.|+-||---+. ..++.|.++|++ ..+.++.+=|
T Consensus 24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~--~Gf~VLgFPc 65 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKD--KGFEVLGFPC 65 (162)
T ss_pred CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhh--CCcEEEeccc
Confidence 79999999999999987653 367788888876 2466655544
No 250
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=22.07 E-value=1.1e+02 Score=24.12 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=18.0
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChh
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS 131 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~ 131 (170)
+..+.+-++|.+.+. .+..|+ +||||.
T Consensus 128 ~~~~~~~~e~~~~~~----~~~~v~----~~wcg~ 154 (202)
T cd00862 128 TRIVDTWEEFKEALN----EKGIVL----APWCGE 154 (202)
T ss_pred eEeeCCHHHHHHHHh----cCCEEE----EEecCC
Confidence 445566778888885 455544 699983
No 251
>PRK12411 cytidine deaminase; Provisional
Probab=22.03 E-value=47 Score=24.65 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=8.8
Q ss_pred CChhhhhhHHHH
Q 030873 128 SCGSCKYIEQGF 139 (170)
Q Consensus 128 WCg~Ck~l~P~~ 139 (170)
=||.||++.-.|
T Consensus 85 PCG~CRQ~l~Ef 96 (132)
T PRK12411 85 PCGACRQVMVEL 96 (132)
T ss_pred CchhHHHHHHHh
Confidence 499999975433
No 252
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=59 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=18.4
Q ss_pred EEEECCCChhhhhhHHHHHHHHHHc
Q 030873 122 VDFYRTSCGSCKYIEQGFSKLCKGS 146 (170)
Q Consensus 122 V~FyA~WCg~Ck~l~P~~~~la~~~ 146 (170)
+.|+|--||.|-....+++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 4599999999987766666654443
No 253
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=21.43 E-value=3.2e+02 Score=24.10 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEEECCCChhhhhhHHHHHHHHHHcCCCCCCEEEEEEEccCCccccc
Q 030873 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNGLSEFNLLV 168 (170)
Q Consensus 101 ~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~Ck~l~P~~~~la~~~~~~~~~v~~~~VD~~d~~~~la 168 (170)
++.++.-++-.+. -+...+|-|--.--+.-..+...+.++|+...+ ++.+.|+.||- ++.+-+.
T Consensus 254 l~~~~m~e~Wedd--~~g~hIvaFaee~dpdG~efleilk~va~~nt~-np~LsivwIDP-D~fPllv 317 (383)
T PF01216_consen 254 LRPEDMFETWEDD--IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTD-NPDLSIVWIDP-DDFPLLV 317 (383)
T ss_dssp --GGGHHHHHHSS--SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-G-GG-HHHH
T ss_pred CChhhhhhhhccc--CCCceEEEEecCCCCchHHHHHHHHHHHHhcCc-CCceeEEEECC-CCCchhH
Confidence 4556655555543 456677778888888899999999999999987 56899999999 7776554
No 254
>PRK05578 cytidine deaminase; Validated
Probab=20.92 E-value=51 Score=24.40 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=9.8
Q ss_pred ECCCChhhhhhHHHH
Q 030873 125 YRTSCGSCKYIEQGF 139 (170)
Q Consensus 125 yA~WCg~Ck~l~P~~ 139 (170)
.+| ||.||++.-.|
T Consensus 83 ~sP-CG~CRQ~l~e~ 96 (131)
T PRK05578 83 LSP-CGRCRQVLAEF 96 (131)
T ss_pred cCc-cHHHHHHHHHh
Confidence 445 99999975443
No 255
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=20.88 E-value=90 Score=19.89 Aligned_cols=19 Identities=0% Similarity=-0.029 Sum_probs=14.2
Q ss_pred EECCCChhhhhhHHHHHHH
Q 030873 124 FYRTSCGSCKYIEQGFSKL 142 (170)
Q Consensus 124 FyA~WCg~Ck~l~P~~~~l 142 (170)
++.+||+.|++..=.++..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~ 20 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK 20 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHc
Confidence 6789999999976544433
No 256
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=95 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=19.0
Q ss_pred eeeeCCHHHHHHHHHhhccCCCeEEEEEECCCChhh
Q 030873 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSC 132 (170)
Q Consensus 97 v~~~~t~~~f~~~l~~~~~~~k~vlV~FyA~WCg~C 132 (170)
+..+.+-++|..+|. +++.++ |||||.-
T Consensus 467 ~~~v~~~~eF~~aL~----~k~iil----aPwcg~~ 494 (551)
T KOG4163|consen 467 IVKVNTWEEFVKALD----QKKIIL----APWCGEI 494 (551)
T ss_pred eeeeeeHHHHHHHhc----cCCEEE----ccccCcH
Confidence 455556677777775 566655 8999964
Done!