BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030875
MASGGSKSAAYILLILNLALYFIVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFG
NMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLITWALTLLAMGLACK
EIDIGWKDSNLRTLEVMTIIVSATQLFCTGAIHAGVEDAAWKRNRMVGRV

High Scoring Gene Products

Symbol, full name Information P value
AT5G18970 protein from Arabidopsis thaliana 1.3e-54
AT1G29520 protein from Arabidopsis thaliana 5.7e-27
AT5G46530 protein from Arabidopsis thaliana 1.4e-25
AT1G04560 protein from Arabidopsis thaliana 2.9e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030875
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2179639 - symbol:AT5G18970 "AT5G18970" species...   564  1.3e-54   1
TAIR|locus:2013708 - symbol:AT1G29520 "AT1G29520" species...   303  5.7e-27   1
TAIR|locus:2151486 - symbol:AT5G46530 "AT5G46530" species...   290  1.4e-25   1
TAIR|locus:2197823 - symbol:AT1G04560 "AT1G04560" species...   202  2.9e-16   1


>TAIR|locus:2179639 [details] [associations]
            symbol:AT5G18970 "AT5G18970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016020 "membrane" evidence=ISS] Pfam:PF05512
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR008390
            HOGENOM:HOG000237713 EMBL:AY084421 IPI:IPI00542119
            RefSeq:NP_197398.1 UniGene:At.31351 UniGene:At.69545 STRING:Q8LG79
            PaxDb:Q8LG79 PRIDE:Q8LG79 EnsemblPlants:AT5G18970.1 GeneID:832015
            KEGG:ath:AT5G18970 TAIR:At5g18970 eggNOG:NOG311958
            InParanoid:Q8LG79 OMA:MGLACKE PhylomeDB:Q8LG79
            ProtClustDB:CLSN2686748 Genevestigator:Q8LG79 Uniprot:Q8LG79
        Length = 171

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 111/171 (64%), Positives = 129/171 (75%)

Query:     1 MASGGSKSXXXXXXXXXXXXXFIVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFG 60
             MASGGSKS             F++T+IA+WAVNHGI+R+RE+AS LSLPA+IFPIYFP G
Sbjct:     1 MASGGSKSAAFMLLMLNLGLYFVITIIASWAVNHGIERTRESASTLSLPAKIFPIYFPVG 60

Query:    61 NMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPXXXXXXXXXXITWALTLLAMGLACK 120
             NMATG FVIF+L+AGVVGM TSL G+ NV QWD P          I+W+LTLLAMGLACK
Sbjct:    61 NMATGFFVIFTLIAGVVGMATSLTGIINVLQWDSPNLHSAAASSLISWSLTLLAMGLACK 120

Query:   121 EIDIGWKDSNLRTLEVMTIIVSATQLFCTGAIHAGV-EDAAWKRNRMVGRV 170
             EI+IGW ++NLRTLEV+TIIVSATQL CTGAIHAGV E  A      +GRV
Sbjct:   121 EINIGWTEANLRTLEVLTIIVSATQLLCTGAIHAGVGETVASGERPHLGRV 171


>TAIR|locus:2013708 [details] [associations]
            symbol:AT1G29520 "AT1G29520" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0016020 "membrane"
            evidence=ISS] Pfam:PF05512 EMBL:CP002684 GenomeReviews:CT485782_GR
            EMBL:AC068667 InterPro:IPR008390 HOGENOM:HOG000237713 EMBL:AY074324
            EMBL:AY096597 IPI:IPI00549032 PIR:B86418 RefSeq:NP_174245.1
            UniGene:At.40728 UniGene:At.70532 EnsemblPlants:AT1G29520.1
            GeneID:839829 KEGG:ath:AT1G29520 TAIR:At1g29520 eggNOG:NOG321338
            InParanoid:Q9C7P9 OMA:TAATIAW PhylomeDB:Q9C7P9
            ProtClustDB:CLSN2679715 ArrayExpress:Q9C7P9 Genevestigator:Q9C7P9
            Uniprot:Q9C7P9
        Length = 158

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 62/134 (46%), Positives = 80/134 (59%)

Query:    23 IVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGTS 82
             IV  I  WA+N  I    E    L LPA   PIYFP GN ATG FVIF+LLAGVVG  ++
Sbjct:    23 IVLGIGGWAMNRAIDHGFEVGPNLELPAHFSPIYFPMGNAATGFFVIFALLAGVVGAAST 82

Query:    83 LAGLHNVFQWDLPXXXXXXXXXXITWALTLLAMGLACKEIDIGWKDSNLRTLEVMTIIVS 142
             ++GL ++  W +           I W LT+LAMG A KEI++  +++ LRT+E   II+S
Sbjct:    83 ISGLSHIRSWTVGSLPAAATAATIAWTLTVLAMGFAWKEIELQGRNAKLRTMEAFLIILS 142

Query:   143 ATQLFCTGAIHAGV 156
              TQL    A+H GV
Sbjct:   143 VTQLIYIAAVH-GV 155


>TAIR|locus:2151486 [details] [associations]
            symbol:AT5G46530 "AT5G46530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016020 "membrane" evidence=ISS] Pfam:PF05512
            EMBL:CP002688 IPI:IPI00548314 RefSeq:NP_199465.4 UniGene:At.55406
            EnsemblPlants:AT5G46530.1 GeneID:834696 KEGG:ath:AT5G46530
            OMA:SAATIAW InterPro:IPR008390 Uniprot:F4KHI4
        Length = 157

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/134 (43%), Positives = 81/134 (60%)

Query:    23 IVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGTS 82
             IV  I AW++N  I       +  SLPA   PI+FP GN ATG F++F+L+AGV G  + 
Sbjct:    23 IVLGIGAWSMNKAINHGFLIGADYSLPAHFSPIHFPMGNAATGFFIMFALIAGVAGAASV 82

Query:    83 LAGLHNVFQWDLPXXXXXXXXXXITWALTLLAMGLACKEIDIGWKDSNLRTLEVMTIIVS 142
             ++G+ ++  W             I W+LTLLAMG  CKEI++G +++ LRT+E   II+S
Sbjct:    83 ISGISHLQSWTTTSLPAAVSAATIAWSLTLLAMGFGCKEIELGMRNARLRTMEAFLIILS 142

Query:   143 ATQLFCTGAIHAGV 156
             ATQL    AI+ GV
Sbjct:   143 ATQLLYIAAIY-GV 155


>TAIR|locus:2197823 [details] [associations]
            symbol:AT1G04560 "AT1G04560" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] Pfam:PF05512 EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC002376 InterPro:IPR008390
            EMBL:AF360343 EMBL:AY051080 IPI:IPI00537314 PIR:B86178
            RefSeq:NP_563710.1 UniGene:At.10465 PaxDb:O23029 PRIDE:O23029
            EnsemblPlants:AT1G04560.1 GeneID:839491 KEGG:ath:AT1G04560
            TAIR:At1g04560 eggNOG:NOG327574 HOGENOM:HOG000237713
            InParanoid:O23029 OMA:EIHIGGH PhylomeDB:O23029
            ProtClustDB:CLSN2687672 ArrayExpress:O23029 Genevestigator:O23029
            Uniprot:O23029
        Length = 186

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/97 (43%), Positives = 58/97 (59%)

Query:    60 GNMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPXXXXXXXXXXITWALTLLAMGLAC 119
             GN AT  F+ FS+LA VVG+ + LAG +++  W             + WA+T LAMGLAC
Sbjct:    47 GNGATPFFLTFSILAAVVGVASKLAGANHIRFWRNDSLAAAGASSIVAWAITALAMGLAC 106

Query:   120 KEIDIG-WKDSNLRTLEVMTIIVSATQLFCTGAIHAG 155
             K+I+IG W+   L+ +E   II++ TQL     IHAG
Sbjct:   107 KQINIGGWRGWRLKMIEAFIIILTFTQLLYLMLIHAG 143


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       147   0.00091  103 3  11 22  0.38    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.11u 0.13s 11.24t   Elapsed:  00:00:01
  Total cpu time:  11.11u 0.13s 11.24t   Elapsed:  00:00:01
  Start:  Fri May 10 01:37:46 2013   End:  Fri May 10 01:37:47 2013

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