BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030875
         (170 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8PM07|DNLJ_XANAC DNA ligase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=ligA
           PE=3 SV=1
          Length = 833

 Score = 30.0 bits (66), Expect = 7.5,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 26/110 (23%)

Query: 61  NMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLITWALTLLAMGLAC- 119
           ++A+G +    L A VVG+G  LAG  +V Q               TW   LL  GL   
Sbjct: 506 HLASGAYA--QLEASVVGIGVDLAGERDVPQ---------------TWQADLLRAGLPSF 548

Query: 120 ----KEIDIGWKDSNLRTLEVMTIIVSATQLFCTGAIHAGVEDA----AW 161
               K+I   W ++ +  +E+         LF  G  H G   A    AW
Sbjct: 549 DWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKALSAW 598


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,176,275
Number of Sequences: 539616
Number of extensions: 2004287
Number of successful extensions: 6298
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6294
Number of HSP's gapped (non-prelim): 10
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)