Query 030875
Match_columns 170
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05512 AWPM-19: AWPM-19-like 100.0 4.1E-78 8.8E-83 480.0 13.9 142 15-156 1-142 (142)
2 PF14118 YfzA: YfzA-like prote 55.6 8.8 0.00019 29.6 1.9 69 13-83 18-89 (94)
3 PF11712 Vma12: Endoplasmic re 46.1 97 0.0021 24.1 6.5 48 11-81 78-126 (142)
4 PF03419 Peptidase_U4: Sporula 42.8 1.5E+02 0.0032 25.5 7.6 28 12-39 7-34 (293)
5 PRK09573 (S)-2,3-di-O-geranylg 41.4 1.6E+02 0.0036 24.8 7.6 19 22-40 46-64 (279)
6 TIGR01474 ubiA_proteo 4-hydrox 40.1 1.8E+02 0.0039 24.9 7.8 19 23-41 50-68 (281)
7 cd03394 PAP2_like_5 PAP2_like_ 35.3 1.6E+02 0.0035 21.2 5.8 46 20-68 6-52 (106)
8 KOG4268 Uncharacterized conser 34.6 1.5E+02 0.0032 25.5 6.2 76 12-90 65-160 (189)
9 TIGR01473 cyoE_ctaB protoheme 33.7 2.6E+02 0.0057 23.6 7.7 23 19-41 41-63 (280)
10 PF06687 SUR7: SUR7/PalI famil 30.9 1.2E+02 0.0026 24.0 4.9 59 60-118 111-171 (212)
11 PRK12882 ubiA prenyltransferas 29.3 2.3E+02 0.0051 23.8 6.6 17 24-40 49-65 (276)
12 TIGR02711 symport_actP cation/ 29.2 4.9E+02 0.011 24.5 10.8 110 18-142 38-156 (549)
13 KOG3145 Cystine transporter Cy 27.7 4E+02 0.0086 25.1 8.2 79 60-147 195-273 (372)
14 PRK12883 ubiA prenyltransferas 27.5 3.5E+02 0.0075 22.8 7.4 16 24-39 48-63 (277)
15 PRK11837 undecaprenyl pyrophos 27.0 3.6E+02 0.0078 22.2 8.3 47 57-107 105-165 (202)
16 TIGR02854 spore_II_GA sigma-E 26.6 3.5E+02 0.0075 23.6 7.4 27 12-38 7-33 (288)
17 KOG4255 Uncharacterized conser 23.7 73 0.0016 30.3 2.8 66 43-119 178-283 (439)
18 PF10821 DUF2567: Protein of u 23.1 2.7E+02 0.0059 23.3 5.8 61 60-121 38-101 (167)
19 PRK12847 ubiA 4-hydroxybenzoat 22.8 4.8E+02 0.01 22.2 7.6 19 22-40 54-72 (285)
20 PRK12873 ubiA prenyltransferas 22.6 4.6E+02 0.0099 23.3 7.5 24 18-41 49-72 (294)
21 PF07043 DUF1328: Protein of u 22.6 52 0.0011 21.6 1.2 15 67-81 3-17 (39)
22 PRK12895 ubiA prenyltransferas 22.4 5.1E+02 0.011 22.7 7.7 20 22-41 46-65 (286)
23 PHA00736 hypothetical protein 21.5 98 0.0021 23.1 2.6 13 65-77 60-72 (79)
24 PF04725 PsbR: Photosystem II 21.5 98 0.0021 24.2 2.7 32 50-81 48-88 (99)
25 COG3346 Uncharacterized conser 21.4 1.2E+02 0.0026 26.8 3.6 33 3-35 6-38 (252)
26 COG5487 Small integral membran 21.4 65 0.0014 22.7 1.6 15 66-80 7-21 (54)
27 PF03878 YIF1: YIF1; InterPro 21.3 2.2E+02 0.0047 24.8 5.1 61 64-135 91-151 (240)
28 PRK12870 ubiA 4-hydroxybenzoat 20.5 5.6E+02 0.012 22.1 7.6 22 20-41 53-74 (290)
No 1
>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].
Probab=100.00 E-value=4.1e-78 Score=480.02 Aligned_cols=142 Identities=61% Similarity=0.934 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccccCCCccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC
Q 030875 15 ILNLALYFIVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDL 94 (170)
Q Consensus 15 ~LNl~mY~IvlgiagWalN~~id~~~~~~~~~~~Pa~~~Piyfp~GN~AT~ffv~faLiAgVVG~aS~l~Gl~Hvr~W~~ 94 (170)
+||||||+|++|||||++||+||++++.+|++++|+||||||||+||.||+||++|+|||||||++|+++|++|+|+||+
T Consensus 1 ~LN~~mY~ivl~iagWalN~~id~g~~~~~~~~~Pa~~~piyfp~GN~AT~ffv~faLlAgVVG~aS~l~G~~h~r~W~~ 80 (142)
T PF05512_consen 1 VLNFCMYVIVLGIAGWALNRAIDHGFEIGPGLGLPAHFSPIYFPMGNAATGFFVIFALLAGVVGAASVLAGLHHVRSWRS 80 (142)
T ss_pred CeehHHHHHHHHHHHHHHHHHhccCcccCCCCCCCCCcCceeccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 030875 95 PNLNAAAASSLITWALTLLAMGLACKEIDIGWKDSNLRTLEVMTIIVSATQLFCTGAIHAGV 156 (170)
Q Consensus 95 ~SLaaAaa~a~iAWaLTlLAmGlACKEI~lg~R~~rLrtLEaf~IIl~~TQLlY~l~lHag~ 156 (170)
|||+||+|+++|||++|+||||+||||||+|+||+||||||+|+|||++|||+|++++|+|+
T Consensus 81 ~sLaaAaa~a~iAW~lTlLAmGlACKeI~~g~r~~rLrtlEaf~IIl~~tQLly~l~lH~g~ 142 (142)
T PF05512_consen 81 ESLAAAAASALIAWALTLLAMGLACKEIHLGGRNWRLRTLEAFTIILSATQLLYLLALHAGV 142 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHheeeecCccchhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 2
>PF14118 YfzA: YfzA-like protein
Probab=55.57 E-value=8.8 Score=29.60 Aligned_cols=69 Identities=26% Similarity=0.341 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCC--ccccccc-cCCCchhhHHHHHHHHHHHHHHHHHHh
Q 030875 13 LLILNLALYFIVTVIAAWAVNHGIQRSREAASVLSLP--ARIFPIY-FPFGNMATGLFVIFSLLAGVVGMGTSL 83 (170)
Q Consensus 13 LL~LNl~mY~IvlgiagWalN~~id~~~~~~~~~~~P--a~~~Piy-fp~GN~AT~ffv~faLiAgVVG~aS~l 83 (170)
+-++=.=+++|+.-..||.-|-.-+ ...+.-+++| -.+++.| .|-=|.-|.||.++-++.|++|+-.-+
T Consensus 18 ~iF~i~QLlFi~~d~t~w~pnf~~g--~~~~~iv~l~~FteW~t~Y~~p~fN~~Tv~~gi~lli~~lig~~kdi 89 (94)
T PF14118_consen 18 GIFLIVQLLFIIFDGTGWGPNFNEG--DFFARIVNLKFFTEWFTPYKSPQFNLFTVFFGITLLIQGLIGAIKDI 89 (94)
T ss_pred HHHHHHHHHHHHhhccccccccCCC--chHHHHhcCHHHHhhcccccCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455788888999999865432 2223333333 2344444 889999999999999999999987544
No 3
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=46.10 E-value=97 Score=24.09 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhhcccccccccccCCCccccccccCCCchhhHHHHHHHHHHHHHHHHH
Q 030875 11 YILLILNLALYFIVTVIAAW-AVNHGIQRSREAASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGT 81 (170)
Q Consensus 11 ~~LL~LNl~mY~IvlgiagW-alN~~id~~~~~~~~~~~Pa~~~Piyfp~GN~AT~ffv~faLiAgVVG~aS 81 (170)
-+.+++|+++=++..+++|| ...... |+.-+++=++++|++|++...+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~-----------------------~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSF-----------------------GGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------cccchHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999 655544 1112455677888877766543
No 4
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=42.81 E-value=1.5e+02 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 030875 12 ILLILNLALYFIVTVIAAWAVNHGIQRS 39 (170)
Q Consensus 12 ~LL~LNl~mY~IvlgiagWalN~~id~~ 39 (170)
.+++.||+|-.+++-+.++.+++.....
T Consensus 7 v~fl~N~~md~~lL~~t~~~~~~~~~~~ 34 (293)
T PF03419_consen 7 VLFLVNFLMDYFLLWLTARLLKRRASRW 34 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 4788999999999999999999987753
No 5
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=41.36 E-value=1.6e+02 Score=24.85 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhccccc
Q 030875 22 FIVTVIAAWAVNHGIQRSR 40 (170)
Q Consensus 22 ~IvlgiagWalN~~id~~~ 40 (170)
.....-++-++|+.+|+..
T Consensus 46 ~~l~~~~~~~iNd~~D~~i 64 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEI 64 (279)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 3445567788999999753
No 6
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=40.11 E-value=1.8e+02 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhcccccc
Q 030875 23 IVTVIAAWAVNHGIQRSRE 41 (170)
Q Consensus 23 IvlgiagWalN~~id~~~~ 41 (170)
....-++=++|+.+|++.+
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD 68 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFD 68 (281)
T ss_pred HHHHHHHHHHHhHhhhccc
Confidence 4455678899999997544
No 7
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=35.26 E-value=1.6e+02 Score=21.21 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhcccccccccccCCCccccccc-cCCCchhhHHHH
Q 030875 20 LYFIVTVIAAWAVNHGIQRSREAASVLSLPARIFPIY-FPFGNMATGLFV 68 (170)
Q Consensus 20 mY~IvlgiagWalN~~id~~~~~~~~~~~Pa~~~Piy-fp~GN~AT~ffv 68 (170)
+++....+.+..+|..++............ .+-+ ||.|-.++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~---~~~~sfPSgHa~~a~~~ 52 (106)
T cd03394 6 LILAEAAALTAAVTEGLKFAVGRARPDGSN---NGYRSFPSGHTASAFAA 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCccCcHHHHHHHHH
Confidence 444455555666666555422111111111 2223 888888877644
No 8
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=34.58 E-value=1.5e+02 Score=25.50 Aligned_cols=76 Identities=34% Similarity=0.496 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc--ccccccCCCccccccc-cCCCchhhHHHH-----------------HHH
Q 030875 12 ILLILNLALYFIVTVIAAWAVNHGIQRSR--EAASVLSLPARIFPIY-FPFGNMATGLFV-----------------IFS 71 (170)
Q Consensus 12 ~LL~LNl~mY~IvlgiagWalN~~id~~~--~~~~~~~~Pa~~~Piy-fp~GN~AT~ffv-----------------~fa 71 (170)
.|..+|+.+|+=++-+|. +.+.+.+.+ ++.|.. +-++=.-|| ||.|.....+|+ .+-
T Consensus 65 ~Lv~llLgLlfDli~vai--vk~~f~R~rP~~t~pS~-l~~~t~DiYsFPsGHaSRaamv~~~~l~~a~~a~Plyv~l~~ 141 (189)
T KOG4268|consen 65 VLVNLLLGLLFDLITVAI--VKKLFKRRRPYETSPSL-LDYLTMDIYSFPSGHASRAAMVSKFFLSHAVLAVPLYVLLLV 141 (189)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcCcccCCHHH-HHHHhhhhhcCCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 455666666664444443 333444321 111110 112333466 899988887777 356
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 030875 72 LLAGVVGMGTSLAGLHNVF 90 (170)
Q Consensus 72 LiAgVVG~aS~l~Gl~Hvr 90 (170)
+-|=|||+.=++-|=||+.
T Consensus 142 ~walvvglSRv~lGRHyvt 160 (189)
T KOG4268|consen 142 LWALVVGLSRVMLGRHYVT 160 (189)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 6788999999999999874
No 9
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=33.74 E-value=2.6e+02 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccc
Q 030875 19 ALYFIVTVIAAWAVNHGIQRSRE 41 (170)
Q Consensus 19 ~mY~IvlgiagWalN~~id~~~~ 41 (170)
++=...+--++=++|+.+|++.+
T Consensus 41 ~~~~~l~~~a~~~~Nd~~D~~iD 63 (280)
T TIGR01473 41 LLGTTLAAASANAFNMYIDRDID 63 (280)
T ss_pred HHHHHHHHHHHHHHHhhcccCcC
Confidence 34445566778899999997543
No 10
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=30.94 E-value=1.2e+02 Score=23.97 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=39.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC--CchHHHHHHHHHHHHHHHHHhhhh
Q 030875 60 GNMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDL--PNLNAAAASSLITWALTLLAMGLA 118 (170)
Q Consensus 60 GN~AT~ffv~faLiAgVVG~aS~l~Gl~Hvr~W~~--~SLaaAaa~a~iAWaLTlLAmGlA 118 (170)
.|..+..++.+-+-.+..+++-.++++.-...+.. ...-.+.-.+.+++..++++..++
T Consensus 111 ~~~~~~~~~l~~ia~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~lva~~i~ 171 (212)
T PF06687_consen 111 NNLLKAMFILYPIAIVFTFLALILSGLLAFFSRPRNTILSLVASILSLLAFIFLLVAAIIA 171 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777888888878754445533 445556666777777777776654
No 11
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=29.25 E-value=2.3e+02 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhccccc
Q 030875 24 VTVIAAWAVNHGIQRSR 40 (170)
Q Consensus 24 vlgiagWalN~~id~~~ 40 (170)
.+--++-++|+..|+..
T Consensus 49 l~~~~~~~~Nd~~D~~i 65 (276)
T PRK12882 49 LATGAGNAINDYFDREI 65 (276)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 34456788999999753
No 12
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=29.23 E-value=4.9e+02 Score=24.47 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCCCccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCch
Q 030875 18 LALYFIVTVIAAWAVNHGIQRSREAASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPNL 97 (170)
Q Consensus 18 l~mY~IvlgiagWalN~~id~~~~~~~~~~~Pa~~~Piyfp~GN~AT~ffv~faLiAgVVG~aS~l~Gl~Hvr~W~~~SL 97 (170)
++.|+++.-.-||-..|.-+.. ++ ||-.|....++.+-+++.|...+.+|-+..---.-.---+.+
T Consensus 38 ~~~y~~~~l~ig~~~~r~~~~~----~d----------y~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~ 103 (549)
T TIGR02711 38 FLLFVGFTLYITYWASKKTRSR----SD----------YYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGL 103 (549)
T ss_pred HHHHHHHHHHHHHHhhcccCCc----hh----------heeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 5666655554455444543321 11 667777778888888888888888776644322221111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc---eeec----cCC--CCCchhHHHHHHHHH
Q 030875 98 NAAAASSLITWALTLLAMGLACK---EIDI----GWK--DSNLRTLEVMTIIVS 142 (170)
Q Consensus 98 aaAaa~a~iAWaLTlLAmGlACK---EI~l----g~R--~~rLrtLEaf~IIl~ 142 (170)
.-. -...++|.+.++=++=-.+ .... +.| ++++|.+-++..++.
T Consensus 104 ~~~-~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~ 156 (549)
T TIGR02711 104 IYS-LGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSLVV 156 (549)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111 1234445443333322122 2333 123 466888888766653
No 13
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.73 E-value=4e+02 Score=25.07 Aligned_cols=79 Identities=22% Similarity=0.073 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCchHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCCchhHHHHHH
Q 030875 60 GNMATGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLITWALTLLAMGLACKEIDIGWKDSNLRTLEVMTI 139 (170)
Q Consensus 60 GN~AT~ffv~faLiAgVVG~aS~l~Gl~Hvr~W~~~SLaaAaa~a~iAWaLTlLAmGlACKEI~lg~R~~rLrtLEaf~I 139 (170)
=|..|.+=+.|+|=|.+.-.-.-+--+..-|.|+..|-.=|-..=.|.|.++...|+.|-+... |+ -+|.-
T Consensus 195 ~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~--------~w-L~f~~ 265 (372)
T KOG3145|consen 195 VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVI--------RW-LAFLN 265 (372)
T ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHH--------HH-HHHHH
Confidence 3566777778888777766666666677889999999986777778999999999999876432 22 34555
Q ss_pred HHHHHHHH
Q 030875 140 IVSATQLF 147 (170)
Q Consensus 140 Il~~TQLl 147 (170)
.++-.|+.
T Consensus 266 ~~syiKl~ 273 (372)
T KOG3145|consen 266 NLSYIKLA 273 (372)
T ss_pred HHHHHHHH
Confidence 55555544
No 14
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=27.47 E-value=3.5e+02 Score=22.81 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhcccc
Q 030875 24 VTVIAAWAVNHGIQRS 39 (170)
Q Consensus 24 vlgiagWalN~~id~~ 39 (170)
...-++-++|+..|+.
T Consensus 48 ~~~~a~~~~Nd~~D~~ 63 (277)
T PRK12883 48 LGCSGGNTINDYFDYE 63 (277)
T ss_pred HHHHHHhHHHhhhhHh
Confidence 3345788999999975
No 15
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=27.04 E-value=3.6e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=24.8
Q ss_pred cCCCchhhHHHHHHH--------------HHHHHHHHHHHhhhhhhhhcCCCCchHHHHHHHHHH
Q 030875 57 FPFGNMATGLFVIFS--------------LLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLIT 107 (170)
Q Consensus 57 fp~GN~AT~ffv~fa--------------LiAgVVG~aS~l~Gl~Hvr~W~~~SLaaAaa~a~iA 107 (170)
||.|..++.|...++ ++|-+||.+-...|.| |-+|-+++..-..+++
T Consensus 105 FPSgHa~~~~~~a~~~l~~~~~~~~~~~~~~a~lva~SRVylGvH----ypsDVlgG~~lG~~~~ 165 (202)
T PRK11837 105 FPSDHGTVIFTFALAFLFWHRLWSGSLLMAIAVAIAWSRVYLGVH----WPLDMLGALLVGMIGC 165 (202)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHH
Confidence 898987776654222 2234445444555554 5566555544443333
No 16
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=26.61 E-value=3.5e+02 Score=23.61 Aligned_cols=27 Identities=7% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc
Q 030875 12 ILLILNLALYFIVTVIAAWAVNHGIQR 38 (170)
Q Consensus 12 ~LL~LNl~mY~IvlgiagWalN~~id~ 38 (170)
.+.+.||+|-.+++-+.++.+.+....
T Consensus 7 v~~l~Nf~~d~~LL~~t~~~lk~~~~~ 33 (288)
T TIGR02854 7 VVFLENFIIDYFLLYLTARTLKDKVSQ 33 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 467899999999999999999987774
No 17
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.65 E-value=73 Score=30.32 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.1
Q ss_pred ccccCCCccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhh-hhcCCC---------------------------
Q 030875 43 ASVLSLPARIFPIYFPFGNMATGLFVIFSLLAGVVGMGTSLAGLHN-VFQWDL--------------------------- 94 (170)
Q Consensus 43 ~~~~~~Pa~~~Piyfp~GN~AT~ffv~faLiAgVVG~aS~l~Gl~H-vr~W~~--------------------------- 94 (170)
.++.++|+||+|- |.|+++|++.+.-+ .++-+++- -|.|.+
T Consensus 178 t~~r~fP~rFs~s--------~FFl~l~~~~~~al---aAF~vL~r~~~~~~~s~~~~~~p~~~l~si~~~ee~~~~~~~ 246 (439)
T KOG4255|consen 178 TPGRPFPPRFSVS--------TFFLALFAFTCAAL---AAFFVLYRLGAHWPSSTTGELEPQLQLGSIGAEEETDESSPL 246 (439)
T ss_pred CCCCCCCCCccHH--------HHHHHHHHHHHHHH---HHHHHHHhcCCCCCCCCCCCCCCccccCCCCcccccccCCCC
Confidence 4555688888887 88999999886543 33444443 345551
Q ss_pred ------------CchHHHHHHHHHHHHHHHHHhhhhc
Q 030875 95 ------------PNLNAAAASSLITWALTLLAMGLAC 119 (170)
Q Consensus 95 ------------~SLaaAaa~a~iAWaLTlLAmGlAC 119 (170)
|.=+++-.++-.|..+++.|+=.|-
T Consensus 247 ~~dsSq~~g~~~e~~A~~~~~A~lAfL~~l~A~vnA~ 283 (439)
T KOG4255|consen 247 QEDSSQAAGTIPEPKAAALCSAHLAFLLGLVAFVNAL 283 (439)
T ss_pred CCCcccCCCccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 2234555567888888888775543
No 18
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=23.07 E-value=2.7e+02 Score=23.28 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=42.6
Q ss_pred CchhhHHH---HHHHHHHHHHHHHHHhhhhhhhhcCCCCchHHHHHHHHHHHHHHHHHhhhhcce
Q 030875 60 GNMATGLF---VIFSLLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLITWALTLLAMGLACKE 121 (170)
Q Consensus 60 GN~AT~ff---v~faLiAgVVG~aS~l~Gl~Hvr~W~~~SLaaAaa~a~iAWaLTlLAmGlACKE 121 (170)
|++..-+| -+|.++.-++|+-+.++--. .|.||-+-+-.+.+.+.++=+...-.+|-..-+
T Consensus 38 ~~e~~~~F~a~a~f~~l~lv~Gvvaav~~W~-~R~~RGP~~~~~l~~Gsv~aa~lA~~vG~~va~ 101 (167)
T PF10821_consen 38 GGESEHFFDADALFVLLGLVLGVVAAVAVWL-WRRRRGPVMVLALAVGSVAAAALAARVGAWVAR 101 (167)
T ss_pred CCcchhHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444 57888889999999998888 999999999888777666544433344443333
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.78 E-value=4.8e+02 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhhccccc
Q 030875 22 FIVTVIAAWAVNHGIQRSR 40 (170)
Q Consensus 22 ~IvlgiagWalN~~id~~~ 40 (170)
.+.+.-++=++|+..|++.
T Consensus 54 ~~l~~~a~~~~Nd~~D~~i 72 (285)
T PRK12847 54 SVLMRSAGCIINDIFDRKI 72 (285)
T ss_pred HHHHHHHHHHHHhHHHhhh
Confidence 3445567789999999754
No 20
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=22.62 E-value=4.6e+02 Score=23.25 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc
Q 030875 18 LALYFIVTVIAAWAVNHGIQRSRE 41 (170)
Q Consensus 18 l~mY~IvlgiagWalN~~id~~~~ 41 (170)
+++=..+..=++-++|+.+|++.+
T Consensus 49 ~~~g~~l~~~a~~~~Nd~~D~~iD 72 (294)
T PRK12873 49 IILGGLAVSGAGCIANDLWDRRID 72 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444455578899999997543
No 21
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=22.59 E-value=52 Score=21.65 Aligned_cols=15 Identities=53% Similarity=1.101 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 030875 67 FVIFSLLAGVVGMGT 81 (170)
Q Consensus 67 fv~faLiAgVVG~aS 81 (170)
|++.|++||+.|...
T Consensus 3 FliiAliAg~lGF~G 17 (39)
T PF07043_consen 3 FLIIALIAGVLGFGG 17 (39)
T ss_pred hHHHHHHHHHcCccc
Confidence 788999999999754
No 22
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=22.42 E-value=5.1e+02 Score=22.73 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhcccccc
Q 030875 22 FIVTVIAAWAVNHGIQRSRE 41 (170)
Q Consensus 22 ~IvlgiagWalN~~id~~~~ 41 (170)
.+..-=||=++|+.+|+..+
T Consensus 46 ~~~~rsag~~~Ndi~Dr~iD 65 (286)
T PRK12895 46 AVSARTSAMSINRIEGLRYD 65 (286)
T ss_pred HHHHHHHHHHHHhHHHhccc
Confidence 44566688899999997544
No 23
>PHA00736 hypothetical protein
Probab=21.50 E-value=98 Score=23.06 Aligned_cols=13 Identities=62% Similarity=1.101 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 030875 65 GLFVIFSLLAGVV 77 (170)
Q Consensus 65 ~ffv~faLiAgVV 77 (170)
+-=++|.||||.|
T Consensus 60 gi~vifgliag~v 72 (79)
T PHA00736 60 GITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHHHHHHh
Confidence 3448999999986
No 24
>PF04725 PsbR: Photosystem II 10 kDa polypeptide PsbR; InterPro: IPR006814 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight intrinsic protein PsbR found in PSII, which is also known as the 10 kDa polypeptide. The PsbR gene is found only in the nucleus of green algae and higher plants. PsbR may provide a binding site for the extrinsic oxygen-evolving complex protein PsbP to the thylakoid membrane. PsbR has a transmembrane domain to anchor it to the thylakoid membrane, and a charged N-terminal domain capable of forming ion bridges with extrinsic proteins, allowing PsbR to act as a docking protein. PsbR may be a pH-dependent stabilising protein that functions at both donor and acceptor sides of PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0042651 thylakoid membrane
Probab=21.46 E-value=98 Score=24.18 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=21.4
Q ss_pred ccccccccC-----CCch----hhHHHHHHHHHHHHHHHHH
Q 030875 50 ARIFPIYFP-----FGNM----ATGLFVIFSLLAGVVGMGT 81 (170)
Q Consensus 50 a~~~Piyfp-----~GN~----AT~ffv~faLiAgVVG~aS 81 (170)
..+||||-| .|+. .|+..+--.+++|++|...
T Consensus 48 DgYSPIY~p~~Ws~~GD~Y~gGt~gL~~WA~~l~glL~~Ga 88 (99)
T PF04725_consen 48 DGYSPIYTPDEWSPSGDVYVGGTTGLLIWAVTLAGLLGGGA 88 (99)
T ss_pred cccCCCcChhhcCCCCCeecCChhhHHHHHHHHHHHHcccc
Confidence 368999976 5552 4556666667788777543
No 25
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=21.44 E-value=1.2e+02 Score=26.80 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030875 3 SGGSKSAAYILLILNLALYFIVTVIAAWAVNHG 35 (170)
Q Consensus 3 ~g~~k~~a~~LL~LNl~mY~IvlgiagWalN~~ 35 (170)
+...+.-..+++++=+.+|.|.++++.|-+-|.
T Consensus 6 ~~~~~~~~~~l~~l~~~~~~il~~LGtWQl~Rl 38 (252)
T COG3346 6 STRRRRWLALLLLLVLATFAILLGLGTWQLQRL 38 (252)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 334445456678899999999999999987653
No 26
>COG5487 Small integral membrane protein [Function unknown]
Probab=21.35 E-value=65 Score=22.70 Aligned_cols=15 Identities=40% Similarity=1.094 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 030875 66 LFVIFSLLAGVVGMG 80 (170)
Q Consensus 66 ffv~faLiAgVVG~a 80 (170)
-|++.+||||+.|..
T Consensus 7 iFlvialIa~~lGFg 21 (54)
T COG5487 7 IFLVIALIAGALGFG 21 (54)
T ss_pred HHHHHHHHHHHhCcc
Confidence 367889999999864
No 27
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=21.31 E-value=2.2e+02 Score=24.77 Aligned_cols=61 Identities=31% Similarity=0.514 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCchHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCCchhHH
Q 030875 64 TGLFVIFSLLAGVVGMGTSLAGLHNVFQWDLPNLNAAAASSLITWALTLLAMGLACKEIDIGWKDSNLRTLE 135 (170)
Q Consensus 64 T~ffv~faLiAgVVG~aS~l~Gl~Hvr~W~~~SLaaAaa~a~iAWaLTlLAmGlACKEI~lg~R~~rLrtLE 135 (170)
+.-|+++-|++|+ ..|+++ ..++|-|..-++.+++-|.+=.+..=++|.-..+. ..+.++|
T Consensus 91 lMa~vTYiLl~g~------~~G~~g--~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~---~~~~~lD 151 (240)
T PF03878_consen 91 LMAFVTYILLSGL------ILGLQG--RFSPELLGIQASSALVWWFLEVLIIKLGLYLLNIS---SSLPILD 151 (240)
T ss_pred hHHHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCHHH
Confidence 4558999999885 356654 68999999999999999999888887777654432 4445555
No 28
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=20.55 E-value=5.6e+02 Score=22.14 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhcccccc
Q 030875 20 LYFIVTVIAAWAVNHGIQRSRE 41 (170)
Q Consensus 20 mY~IvlgiagWalN~~id~~~~ 41 (170)
+=.+.+--+|=++|+.+|++.+
T Consensus 53 lg~~~~~~a~~~~Nd~~D~~iD 74 (290)
T PRK12870 53 LGALATSAAGCVVNDLWDRDID 74 (290)
T ss_pred HHHHHHHHHHHHHHhHHHhccC
Confidence 3344556688899999997544
Done!