Query 030875
Match_columns 170
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p06_A Hypothetical protein AF 22.3 41 0.0014 25.2 1.9 11 12-22 88-98 (114)
2 1afo_A Glycophorin A; integral 21.6 57 0.002 20.8 2.2 17 65-81 12-28 (40)
3 1ro7_A Alpha-2,3/8-sialyltrans 21.5 38 0.0013 27.8 1.8 22 102-126 131-153 (259)
4 2p2v_A Alpha-2,3-sialyltransfe 19.1 47 0.0016 28.1 1.9 15 110-124 154-168 (288)
5 1q90_M Cytochrome B6F complex 18.7 39 0.0013 21.4 0.9 23 102-124 8-32 (39)
6 1fjk_A Cardiac phospholamban; 15.8 85 0.0029 20.8 2.1 12 14-25 31-42 (52)
7 1vf5_F Protein PET M; photosyn 14.6 1.1E+02 0.0037 18.9 2.2 21 102-122 7-29 (35)
8 3lbw_A M2 protein; proton chan 14.1 54 0.0018 18.7 0.7 17 79-95 4-20 (23)
9 2e2s_A Agelenin; cystine knot, 12.1 61 0.0021 20.2 0.5 10 115-124 20-29 (36)
10 2wqq_A Alpha-2,3-/2,8-sialyltr 11.5 96 0.0033 25.9 1.8 16 110-125 136-152 (291)
No 1
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=22.25 E-value=41 Score=25.15 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 030875 12 ILLILNLALYF 22 (170)
Q Consensus 12 ~LL~LNl~mY~ 22 (170)
+|=+.|||||+
T Consensus 88 lldvanfcmyl 98 (114)
T 2p06_A 88 LLDVANFCMYL 98 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45688999997
No 2
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.56 E-value=57 Score=20.83 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030875 65 GLFVIFSLLAGVVGMGT 81 (170)
Q Consensus 65 ~ffv~faLiAgVVG~aS 81 (170)
--.++|+..||++|.-=
T Consensus 12 i~lII~~vmaGiIG~Il 28 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTIL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34689999999999753
No 3
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=21.47 E-value=38 Score=27.82 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhcceeec-cC
Q 030875 102 ASSLITWALTLLAMGLACKEIDI-GW 126 (170)
Q Consensus 102 a~a~iAWaLTlLAmGlACKEI~l-g~ 126 (170)
++++. ...+|.-++||||++ |-
T Consensus 131 stGl~---~~~lA~~lGckeIyLyG~ 153 (259)
T 1ro7_A 131 TSGVY---MCAVAIALGYKEIYLSGI 153 (259)
T ss_dssp CHHHH---HHHHHHHHTCCEEEEESC
T ss_pred CHHHH---HHHHHHHCCCCEEEEEeE
Confidence 44554 466788899999999 64
No 4
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=19.13 E-value=47 Score=28.11 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.6
Q ss_pred HHHHHhhhhcceeec
Q 030875 110 LTLLAMGLACKEIDI 124 (170)
Q Consensus 110 LTlLAmGlACKEI~l 124 (170)
...+|..++||||++
T Consensus 154 ~l~iA~~lGckeIyL 168 (288)
T 2p2v_A 154 MCAIAIALGYKTIYL 168 (288)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 466788889999999
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=18.74 E-value=39 Score=21.43 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH--HHhhhhcceeec
Q 030875 102 ASSLITWALTL--LAMGLACKEIDI 124 (170)
Q Consensus 102 a~a~iAWaLTl--LAmGlACKEI~l 124 (170)
.++.+.|.+|+ ||.||.-=+|+-
T Consensus 8 ~~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 8 GTALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35778888888 677776555443
No 6
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=15.75 E-value=85 Score=20.85 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q 030875 14 LILNLALYFIVT 25 (170)
Q Consensus 14 L~LNl~mY~Ivl 25 (170)
|++|||+-+|-+
T Consensus 31 lfvnfclilicl 42 (52)
T 1fjk_A 31 LFINFCLILIFL 42 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999877654
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=14.64 E-value=1.1e+02 Score=18.93 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=14.1
Q ss_pred HHHHHHHHHHH--HHhhhhccee
Q 030875 102 ASSLITWALTL--LAMGLACKEI 122 (170)
Q Consensus 102 a~a~iAWaLTl--LAmGlACKEI 122 (170)
-++.+.|.+|+ ||.|+.--+|
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 35778899988 6666654433
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=14.13 E-value=54 Score=18.72 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=12.8
Q ss_pred HHHHhhhhhhhhcCCCC
Q 030875 79 MGTSLAGLHNVFQWDLP 95 (170)
Q Consensus 79 ~aS~l~Gl~Hvr~W~~~ 95 (170)
+++++.|+.|+--|--|
T Consensus 4 ~aa~iigIlHLiLwIlD 20 (23)
T 3lbw_A 4 VAASIIAILHLILWILD 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 46778899998887544
No 9
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=12.07 E-value=61 Score=20.24 Aligned_cols=10 Identities=60% Similarity=1.145 Sum_probs=8.2
Q ss_pred hhhhcceeec
Q 030875 115 MGLACKEIDI 124 (170)
Q Consensus 115 mGlACKEI~l 124 (170)
-|+-|||.++
T Consensus 20 sgl~CKeL~i 29 (36)
T 2e2s_A 20 SGLKCKELSI 29 (36)
T ss_dssp TTCCEEEEET
T ss_pred CCCceeeeee
Confidence 3788999887
No 10
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=11.52 E-value=96 Score=25.94 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.2
Q ss_pred HHHHHhhhhcceeec-c
Q 030875 110 LTLLAMGLACKEIDI-G 125 (170)
Q Consensus 110 LTlLAmGlACKEI~l-g 125 (170)
+.-+|.-++||||++ |
T Consensus 136 ~lslA~~lGckeIyLyG 152 (291)
T 2wqq_A 136 MCAVAIALGYKEIYLSG 152 (291)
T ss_dssp HHHHHHHTTCCEEEEES
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 456788889999999 5
Done!