Query 030875
Match_columns 170
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 09:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030875.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030875hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p06a1 a.204.1.3 (A:1-84) Hyp 27.3 14 0.001 24.7 1.9 11 12-22 67-77 (84)
2 d2aqaa1 g.41.16.1 (A:2-58) H/a 13.0 25 0.0019 22.3 0.5 10 47-56 29-38 (57)
3 d2fyma1 c.1.11.1 (A:140-431) E 9.2 31 0.0023 27.4 -0.1 21 111-131 241-263 (292)
4 d2ey4e1 g.41.16.1 (E:4-55) Rib 8.3 47 0.0034 20.5 0.5 10 47-56 27-36 (52)
5 d2apob1 g.41.16.1 (B:403-457) 8.3 47 0.0034 20.7 0.5 10 47-56 29-38 (55)
6 d1vf5c3 f.23.23.1 (C:250-286) 8.3 1.3E+02 0.0096 17.3 2.6 22 129-150 4-25 (37)
7 d1w6ta1 c.1.11.1 (A:138-433) E 7.1 45 0.0032 26.4 -0.0 21 111-131 245-267 (296)
8 d2al1a1 c.1.11.1 (A:142-436) E 7.1 44 0.0032 26.4 -0.0 20 111-130 243-264 (295)
9 d2akza1 c.1.11.1 (A:140-433) E 6.5 49 0.0036 26.1 -0.0 20 111-130 242-263 (294)
10 d2ptza1 c.1.11.1 (A:139-429) E 6.5 50 0.0036 26.0 -0.0 20 111-130 244-265 (291)
No 1
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.26 E-value=14 Score=24.75 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 030875 12 ILLILNLALYF 22 (170)
Q Consensus 12 ~LL~LNl~mY~ 22 (170)
+|=+-|||||+
T Consensus 67 lldvanfcmyl 77 (84)
T d2p06a1 67 LLDVANFCMYL 77 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45688999997
No 2
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.99 E-value=25 Score=22.31 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=7.9
Q ss_pred CCCccccccc
Q 030875 47 SLPARIFPIY 56 (170)
Q Consensus 47 ~~Pa~~~Piy 56 (170)
.-||+|||-.
T Consensus 29 ahPaRFSPdD 38 (57)
T d2aqaa1 29 AHPARFSPDD 38 (57)
T ss_dssp SCCCCCCSSS
T ss_pred cCCCcCCccc
Confidence 4689999964
No 3
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]}
Probab=9.16 E-value=31 Score=27.36 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHhhhhcceeecc--CCCCCc
Q 030875 111 TLLAMGLACKEIDIG--WKDSNL 131 (170)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~rL 131 (170)
.=||.|+.|.+|.+| .|+.|+
T Consensus 241 aDLAVg~ga~~iK~G~~~R~ER~ 263 (292)
T d2fyma1 241 ADLAVGTAAGQIKTGSMSRSDRV 263 (292)
T ss_dssp HHHHHHTTCEEEECCCSCSHHHH
T ss_pred HHHHHHhCCCeeecCCCcccchh
Confidence 348999999999998 676663
No 4
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.27 E-value=47 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=7.9
Q ss_pred CCCccccccc
Q 030875 47 SLPARIFPIY 56 (170)
Q Consensus 47 ~~Pa~~~Piy 56 (170)
.-|++|||-.
T Consensus 27 a~ParfSPeD 36 (52)
T d2ey4e1 27 AHPPRFSPED 36 (52)
T ss_dssp SSCCCCCTTC
T ss_pred cCCCCCCCCc
Confidence 4589999974
No 5
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.26 E-value=47 Score=20.72 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=7.9
Q ss_pred CCCccccccc
Q 030875 47 SLPARIFPIY 56 (170)
Q Consensus 47 ~~Pa~~~Piy 56 (170)
.-|++|||-.
T Consensus 29 a~P~rfSPeD 38 (55)
T d2apob1 29 PKPPKFSLED 38 (55)
T ss_dssp CCCCCCCTTC
T ss_pred cCCCCCCCCc
Confidence 4589999974
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.25 E-value=1.3e+02 Score=17.33 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 030875 129 SNLRTLEVMTIIVSATQLFCTG 150 (170)
Q Consensus 129 ~rLrtLEaf~IIl~~TQLlY~l 150 (170)
.|.+-+=+|..-...+|++.++
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVl 25 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLIL 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999998875
No 7
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.12 E-value=45 Score=26.43 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHhhhhcceeecc--CCCCCc
Q 030875 111 TLLAMGLACKEIDIG--WKDSNL 131 (170)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~rL 131 (170)
.=||.|+.|++|..| .|+.|.
T Consensus 245 adLAVg~~a~~iK~G~~~R~ER~ 267 (296)
T d1w6ta1 245 ADIAVATNAGQIKTGSLSRTDRI 267 (296)
T ss_dssp HHHHHHTTCCEEECCCSSSHHHH
T ss_pred HHHHHHcCCCeeecCCCcchhHH
Confidence 348999999999998 666663
No 8
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.08 E-value=44 Score=26.42 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHhhhhcceeecc--CCCCC
Q 030875 111 TLLAMGLACKEIDIG--WKDSN 130 (170)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~r 130 (170)
.=||.|+.|+.|.+| .|+.|
T Consensus 243 aDLAVg~~a~~iK~G~~~R~ER 264 (295)
T d2al1a1 243 ADLVVGLRTGQIKTGAPARSER 264 (295)
T ss_dssp HHHHHHTTCSEEECCCSCSHHH
T ss_pred hhhhHhcCCCeeeeCCCcchhH
Confidence 458899999999998 56655
No 9
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=6.53 E-value=49 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHHHhhhhcceeecc--CCCCC
Q 030875 111 TLLAMGLACKEIDIG--WKDSN 130 (170)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~r 130 (170)
.=||.|+.|+.|.+| .|+.|
T Consensus 242 aDLAVg~~a~~iK~G~~~r~ER 263 (294)
T d2akza1 242 ADLVVGLCTGQIKTGAPCRSER 263 (294)
T ss_dssp HHHHHHHTCSEEECCCSCSHHH
T ss_pred hHHHHhcCCCeeeeCCCcchHH
Confidence 347889999999998 47655
No 10
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=6.49 E-value=50 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHhhhhcceeecc--CCCCC
Q 030875 111 TLLAMGLACKEIDIG--WKDSN 130 (170)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~r 130 (170)
.=||.|+.|..|.+| .|+.|
T Consensus 244 aDLAVg~~a~~iK~G~~~r~ER 265 (291)
T d2ptza1 244 ADLVVALGSGQIKTGAPCRGER 265 (291)
T ss_dssp HHHHHHHTCSEEECCSSCSHHH
T ss_pred HHHHHHhCCCceecCCCcchHH
Confidence 348899999999998 46655
Done!