Query 030876
Match_columns 170
No_of_seqs 137 out of 848
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0528 PyrH Uridylate kinase 100.0 8.4E-30 1.8E-34 216.8 7.4 79 89-168 4-82 (238)
2 PRK14556 pyrH uridylate kinase 100.0 3.7E-29 8E-34 212.5 6.7 80 89-168 14-93 (249)
3 PRK14557 pyrH uridylate kinase 99.8 1.4E-19 3.1E-24 152.0 7.0 79 89-168 3-81 (247)
4 PRK14558 pyrH uridylate kinase 99.5 1.3E-14 2.9E-19 118.5 6.4 75 91-168 1-75 (231)
5 cd04235 AAK_CK AAK_CK: Carbama 99.5 2.6E-14 5.5E-19 125.0 5.8 77 92-168 1-88 (308)
6 TIGR02075 pyrH_bact uridylate 99.4 3.4E-13 7.4E-18 110.8 6.6 78 90-168 1-78 (233)
7 cd04240 AAK_UC AAK_UC: Unchara 99.4 2.1E-13 4.6E-18 111.0 3.1 61 94-168 1-64 (203)
8 PRK00358 pyrH uridylate kinase 99.4 1.3E-12 2.9E-17 106.1 7.0 77 91-168 1-77 (231)
9 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.3 1.3E-12 2.9E-17 107.0 6.1 77 91-168 1-77 (231)
10 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.3 7.4E-12 1.6E-16 101.8 5.7 72 92-168 1-73 (221)
11 cd04239 AAK_UMPK-like AAK_UMPK 99.2 2.3E-11 5E-16 99.2 6.5 75 92-168 1-75 (229)
12 TIGR02076 pyrH_arch uridylate 99.1 4.4E-11 9.5E-16 96.9 5.1 71 93-168 1-72 (221)
13 PRK12454 carbamate kinase-like 99.1 1.7E-10 3.6E-15 101.7 5.9 78 91-168 3-92 (313)
14 TIGR00746 arcC carbamate kinas 99.1 1.6E-10 3.4E-15 101.1 5.6 78 91-168 1-89 (310)
15 PRK12353 putative amino acid k 99.1 1.6E-10 3.4E-15 100.5 5.3 79 90-168 2-92 (314)
16 cd04255 AAK_UMPK-MosAB AAK_UMP 99.0 3.5E-10 7.6E-15 96.1 5.4 70 93-168 33-103 (262)
17 PRK13402 gamma-glutamyl kinase 98.6 8.4E-08 1.8E-12 85.6 6.9 56 89-146 4-59 (368)
18 PTZ00489 glutamate 5-kinase; P 98.6 7.2E-08 1.6E-12 82.4 6.1 71 89-163 7-80 (264)
19 cd04241 AAK_FomA-like AAK_FomA 98.6 4.7E-08 1E-12 80.3 4.4 72 92-167 1-75 (252)
20 TIGR01027 proB glutamate 5-kin 98.4 5.5E-07 1.2E-11 79.6 6.6 49 91-140 1-49 (363)
21 PRK05429 gamma-glutamyl kinase 98.2 2.4E-06 5.2E-11 75.7 6.0 55 89-145 7-61 (372)
22 PF00696 AA_kinase: Amino acid 98.1 4.6E-06 1E-10 66.7 5.4 51 91-147 1-51 (242)
23 cd04256 AAK_P5CS_ProBA AAK_P5C 98.1 6.7E-06 1.5E-10 70.7 6.6 51 89-139 7-57 (284)
24 cd04242 AAK_G5K_ProB AAK_G5K_P 98.1 7.1E-06 1.5E-10 68.2 6.2 47 92-139 1-47 (251)
25 TIGR00656 asp_kin_monofn aspar 97.9 1.1E-05 2.3E-10 70.6 4.7 70 91-168 1-76 (401)
26 cd02115 AAK Amino Acid Kinases 97.9 1.4E-05 3.1E-10 64.2 5.0 65 94-165 1-73 (248)
27 cd04246 AAK_AK-DapG-like AAK_A 97.9 1.9E-05 4.2E-10 64.8 5.0 63 93-162 2-68 (239)
28 cd04261 AAK_AKii-LysC-BS AAK_A 97.9 2E-05 4.4E-10 64.8 5.1 46 93-145 2-48 (239)
29 PRK06635 aspartate kinase; Rev 97.8 3.4E-05 7.3E-10 67.6 5.4 47 91-144 2-48 (404)
30 PRK12314 gamma-glutamyl kinase 97.7 8.9E-05 1.9E-09 62.9 6.8 48 90-138 9-56 (266)
31 TIGR01092 P5CS delta l-pyrroli 97.6 0.00012 2.5E-09 70.2 6.4 50 89-139 6-55 (715)
32 PRK07431 aspartate kinase; Pro 97.6 9.8E-05 2.1E-09 68.3 5.2 48 92-146 3-51 (587)
33 cd04234 AAK_AK AAK_AK: Amino A 97.3 0.00033 7.1E-09 57.5 5.0 45 92-144 1-46 (227)
34 PRK04531 acetylglutamate kinas 97.3 0.00032 6.9E-09 63.5 5.2 58 90-158 36-93 (398)
35 cd04237 AAK_NAGS-ABP AAK_NAGS- 97.2 0.00066 1.4E-08 58.1 5.6 49 90-146 18-66 (280)
36 COG0263 ProB Glutamate 5-kinas 97.2 0.0012 2.6E-08 60.3 7.5 56 89-146 5-60 (369)
37 PLN02512 acetylglutamate kinas 97.1 0.0012 2.6E-08 57.3 6.3 57 90-155 47-103 (309)
38 PRK05279 N-acetylglutamate syn 97.1 0.001 2.2E-08 59.4 5.7 56 90-155 25-80 (441)
39 cd04260 AAK_AKi-DapG-BS AAK_AK 97.1 0.0018 3.9E-08 53.9 6.8 37 93-136 2-38 (244)
40 PRK00942 acetylglutamate kinas 97.1 0.00076 1.7E-08 57.0 4.4 48 90-144 23-70 (283)
41 PRK08210 aspartate kinase I; R 97.0 0.0008 1.7E-08 59.4 4.6 39 91-136 2-40 (403)
42 PRK12352 putative carbamate ki 97.0 0.0014 2.9E-08 58.1 5.6 53 91-143 3-58 (316)
43 TIGR01890 N-Ac-Glu-synth amino 96.9 0.0017 3.6E-08 58.1 5.5 60 90-159 17-76 (429)
44 PLN02418 delta-1-pyrroline-5-c 96.9 0.0024 5.2E-08 61.6 6.7 48 90-138 15-62 (718)
45 PRK08841 aspartate kinase; Val 96.8 0.0022 4.7E-08 57.7 5.6 42 92-140 3-44 (392)
46 TIGR00761 argB acetylglutamate 96.7 0.002 4.3E-08 52.6 4.1 41 92-141 1-41 (231)
47 cd04250 AAK_NAGK-C AAK_NAGK-C: 96.7 0.0025 5.4E-08 53.9 4.6 47 91-144 15-61 (279)
48 cd04238 AAK_NAGK-like AAK_NAGK 96.7 0.0019 4E-08 53.7 3.7 43 93-142 1-43 (256)
49 CHL00202 argB acetylglutamate 96.6 0.0029 6.3E-08 54.2 4.7 47 91-144 24-70 (284)
50 KOG1154 Gamma-glutamyl kinase 96.6 0.0056 1.2E-07 54.3 6.5 54 89-142 8-61 (285)
51 PRK12354 carbamate kinase; Rev 96.6 0.0048 1E-07 54.8 5.9 50 91-141 1-53 (307)
52 cd04252 AAK_NAGK-fArgBP AAK_NA 96.4 0.0049 1.1E-07 51.6 4.7 53 94-157 2-54 (248)
53 cd04236 AAK_NAGS-Urea AAK_NAGS 96.3 0.0088 1.9E-07 51.9 5.8 47 90-143 35-81 (271)
54 PRK12686 carbamate kinase; Rev 96.2 0.0078 1.7E-07 53.5 5.1 52 91-142 3-55 (312)
55 PLN02825 amino-acid N-acetyltr 96.2 0.009 1.9E-07 56.2 5.5 60 89-158 16-75 (515)
56 PRK14058 acetylglutamate/acety 95.9 0.0094 2E-07 50.4 4.0 51 93-155 2-52 (268)
57 COG0548 ArgB Acetylglutamate k 95.8 0.021 4.5E-07 50.1 5.7 61 90-159 2-62 (265)
58 cd04249 AAK_NAGK-NC AAK_NAGK-N 95.7 0.014 3E-07 48.5 4.1 42 93-141 1-43 (252)
59 cd04251 AAK_NAGK-UC AAK_NAGK-U 94.5 0.031 6.7E-07 47.1 2.9 50 93-157 1-50 (257)
60 TIGR00657 asp_kinases aspartat 94.1 0.094 2E-06 47.1 5.2 41 92-139 2-42 (441)
61 COG1608 Predicted archaeal kin 94.0 0.098 2.1E-06 46.0 5.0 57 93-153 3-60 (252)
62 TIGR02078 AspKin_pair Pyrococc 93.7 0.058 1.3E-06 48.0 3.1 51 93-153 2-73 (327)
63 cd04244 AAK_AK-LysC-like AAK_A 93.4 0.13 2.8E-06 44.7 4.7 39 92-138 1-39 (298)
64 PRK06291 aspartate kinase; Pro 92.8 0.19 4.1E-06 45.9 5.0 41 91-138 1-41 (465)
65 COG0527 LysC Aspartokinases [A 92.3 0.25 5.5E-06 45.8 5.2 42 92-140 3-44 (447)
66 COG0549 ArcC Carbamate kinase 89.5 0.51 1.1E-05 42.8 4.3 51 91-141 1-54 (312)
67 cd04259 AAK_AK-DapDC AAK_AK-Da 88.1 1 2.2E-05 39.4 5.1 39 93-138 2-40 (295)
68 TIGR01664 DNA-3'-Pase DNA 3'-p 85.8 2.1 4.6E-05 33.8 5.4 57 89-145 12-74 (166)
69 PRK09411 carbamate kinase; Rev 85.4 1.5 3.1E-05 39.3 4.7 68 91-161 2-76 (297)
70 COG2054 Uncharacterized archae 85.0 1.7 3.8E-05 37.5 4.8 60 94-165 3-63 (212)
71 PRK08961 bifunctional aspartat 84.3 1.5 3.2E-05 43.3 4.6 41 91-138 8-48 (861)
72 cd04257 AAK_AK-HSDH AAK_AK-HSD 83.4 2 4.3E-05 37.5 4.6 38 93-138 2-39 (294)
73 COG0560 SerB Phosphoserine pho 81.5 3.4 7.4E-05 34.2 5.1 48 110-158 63-121 (212)
74 cd04243 AAK_AK-HSDH-like AAK_A 80.5 2.9 6.3E-05 36.5 4.6 37 93-138 2-38 (293)
75 PRK09084 aspartate kinase III; 80.4 2.6 5.7E-05 38.6 4.5 36 93-138 2-37 (448)
76 PRK08140 enoyl-CoA hydratase; 76.5 10 0.00023 31.5 6.6 55 90-144 3-62 (262)
77 cd04258 AAK_AKiii-LysC-EC AAK_ 75.5 4.2 9E-05 35.7 4.1 36 93-138 2-37 (292)
78 PRK08373 aspartate kinase; Val 74.7 3.5 7.7E-05 37.1 3.5 39 90-138 3-41 (341)
79 COG1576 Uncharacterized conser 73.0 6.5 0.00014 32.5 4.4 43 91-144 69-111 (155)
80 COG2185 Sbm Methylmalonyl-CoA 72.9 4.4 9.5E-05 33.0 3.3 44 115-158 77-121 (143)
81 TIGR03210 badI 2-ketocyclohexa 70.8 15 0.00032 30.7 6.1 36 108-143 24-61 (256)
82 cd04245 AAK_AKiii-YclM-BS AAK_ 70.0 8.3 0.00018 33.8 4.7 36 93-138 2-37 (288)
83 PF02590 SPOUT_MTase: Predicte 68.9 7.9 0.00017 31.2 4.0 40 89-139 67-107 (155)
84 TIGR00640 acid_CoA_mut_C methy 68.0 8.5 0.00018 29.9 3.9 43 112-157 67-110 (132)
85 PRK05862 enoyl-CoA hydratase; 67.8 23 0.00049 29.5 6.6 37 108-144 26-63 (257)
86 PRK07110 polyketide biosynthes 67.3 23 0.00049 29.5 6.5 55 90-144 4-64 (249)
87 PRK05809 3-hydroxybutyryl-CoA 66.9 24 0.00053 29.3 6.6 55 90-144 3-64 (260)
88 PRK00103 rRNA large subunit me 66.9 9.1 0.0002 30.9 4.0 36 92-138 70-106 (157)
89 PRK05995 enoyl-CoA hydratase; 66.9 25 0.00054 29.3 6.7 37 108-144 26-63 (262)
90 PF02441 Flavoprotein: Flavopr 66.4 11 0.00025 28.2 4.2 34 91-136 1-34 (129)
91 PLN02551 aspartokinase 66.4 9.8 0.00021 36.0 4.7 40 89-137 50-89 (521)
92 PRK07396 dihydroxynaphthoic ac 66.0 20 0.00044 30.3 6.1 55 90-144 12-73 (273)
93 PRK08258 enoyl-CoA hydratase; 65.5 37 0.0008 28.7 7.6 37 108-144 39-76 (277)
94 PRK05981 enoyl-CoA hydratase; 64.8 29 0.00062 29.0 6.7 37 108-144 26-64 (266)
95 PRK06142 enoyl-CoA hydratase; 64.8 26 0.00055 29.4 6.4 37 108-144 28-65 (272)
96 PRK06210 enoyl-CoA hydratase; 64.6 24 0.00052 29.6 6.2 55 90-144 4-65 (272)
97 PRK09034 aspartate kinase; Rev 64.2 11 0.00024 34.5 4.5 35 93-137 2-36 (454)
98 TIGR00246 tRNA_RlmH_YbeA rRNA 63.9 11 0.00025 30.3 4.0 36 92-138 68-103 (153)
99 PHA02530 pseT polynucleotide k 62.9 16 0.00035 30.3 4.8 64 90-154 158-227 (300)
100 PRK07659 enoyl-CoA hydratase; 62.6 28 0.0006 29.1 6.2 37 108-144 28-64 (260)
101 PF00702 Hydrolase: haloacid d 62.3 12 0.00026 28.4 3.7 40 115-155 129-168 (215)
102 PRK07854 enoyl-CoA hydratase; 62.0 16 0.00034 30.4 4.6 37 108-144 22-58 (243)
103 cd02067 B12-binding B12 bindin 61.9 8 0.00017 28.2 2.6 46 111-159 63-109 (119)
104 PRK12478 enoyl-CoA hydratase; 61.7 29 0.00064 30.0 6.4 37 108-144 27-64 (298)
105 TIGR01457 HAD-SF-IIA-hyp2 HAD- 61.3 15 0.00032 30.5 4.4 59 90-155 1-61 (249)
106 PRK09466 metL bifunctional asp 60.7 14 0.0003 36.9 4.8 37 92-137 12-48 (810)
107 PRK09120 p-hydroxycinnamoyl Co 60.5 31 0.00067 29.3 6.2 56 89-144 6-67 (275)
108 PRK07112 polyketide biosynthes 60.4 34 0.00074 28.5 6.4 36 108-144 26-61 (255)
109 PRK06144 enoyl-CoA hydratase; 60.3 33 0.00071 28.8 6.3 54 91-144 8-68 (262)
110 PRK08272 enoyl-CoA hydratase; 60.1 40 0.00086 28.9 6.9 55 90-144 9-69 (302)
111 PRK09436 thrA bifunctional asp 59.5 14 0.0003 36.7 4.5 38 93-138 2-39 (819)
112 PLN02664 enoyl-CoA hydratase/d 58.8 19 0.00042 30.3 4.7 37 108-144 30-67 (275)
113 PRK06023 enoyl-CoA hydratase; 58.4 19 0.00041 29.9 4.5 37 108-144 28-65 (251)
114 PRK08260 enoyl-CoA hydratase; 58.0 39 0.00084 28.9 6.4 37 108-144 26-63 (296)
115 COG1024 CaiD Enoyl-CoA hydrata 57.6 21 0.00044 29.7 4.6 36 109-144 28-64 (257)
116 PF01740 STAS: STAS domain; I 57.3 41 0.00089 23.9 5.6 40 89-135 47-86 (117)
117 TIGR02280 PaaB1 phenylacetate 57.1 35 0.00077 28.3 5.9 37 108-144 21-57 (256)
118 cd02071 MM_CoA_mut_B12_BD meth 57.0 18 0.00038 27.0 3.8 42 112-156 64-106 (122)
119 TIGR01490 HAD-SF-IB-hyp1 HAD-s 57.0 16 0.00035 28.1 3.7 42 117-159 91-132 (202)
120 PRK10530 pyridoxal phosphate ( 56.5 34 0.00074 27.5 5.6 57 90-154 3-60 (272)
121 PRK06688 enoyl-CoA hydratase; 56.2 43 0.00094 27.7 6.3 37 108-144 27-64 (259)
122 cd04247 AAK_AK-Hom3 AAK_AK-Hom 56.2 18 0.0004 32.0 4.3 37 93-138 3-39 (306)
123 COG3340 PepE Peptidase E [Amin 56.0 7.2 0.00016 34.1 1.7 27 133-159 87-113 (224)
124 PRK06190 enoyl-CoA hydratase; 55.8 48 0.001 28.0 6.6 37 108-144 26-63 (258)
125 PRK07827 enoyl-CoA hydratase; 55.8 45 0.00098 27.8 6.4 37 108-144 28-65 (260)
126 PRK08138 enoyl-CoA hydratase; 55.7 22 0.00048 29.7 4.5 37 108-144 30-67 (261)
127 TIGR01929 menB naphthoate synt 55.6 45 0.00097 27.9 6.3 37 108-144 25-63 (259)
128 PF05005 Ocnus: Janus/Ocnus fa 55.6 16 0.00034 28.4 3.3 52 89-144 14-72 (108)
129 TIGR01689 EcbF-BcbF capsule bi 55.1 23 0.00049 27.7 4.2 52 91-143 2-54 (126)
130 PRK11423 methylmalonyl-CoA dec 54.3 47 0.001 27.9 6.3 54 91-144 4-64 (261)
131 PRK10513 sugar phosphate phosp 54.3 35 0.00075 27.7 5.3 57 90-154 3-60 (270)
132 TIGR01491 HAD-SF-IB-PSPlk HAD- 54.2 19 0.0004 27.4 3.5 40 117-157 84-123 (201)
133 COG0419 SbcC ATPase involved i 54.2 21 0.00046 35.3 4.8 37 100-136 843-880 (908)
134 TIGR01459 HAD-SF-IIA-hyp4 HAD- 54.0 25 0.00054 28.7 4.5 60 89-155 7-67 (242)
135 TIGR03222 benzo_boxC benzoyl-C 53.9 52 0.0011 31.6 7.2 37 108-144 43-82 (546)
136 PRK06127 enoyl-CoA hydratase; 53.9 71 0.0015 26.9 7.3 37 108-144 33-71 (269)
137 PRK08290 enoyl-CoA hydratase; 53.2 56 0.0012 28.0 6.7 37 108-144 26-63 (288)
138 cd01453 vWA_transcription_fact 53.0 26 0.00057 27.9 4.4 45 91-139 6-57 (183)
139 PRK05869 enoyl-CoA hydratase; 52.9 33 0.00071 28.3 5.0 46 94-144 20-66 (222)
140 COG2344 AT-rich DNA-binding pr 52.9 17 0.00036 31.6 3.4 39 104-144 60-98 (211)
141 PF03575 Peptidase_S51: Peptid 52.6 13 0.00028 28.7 2.5 28 133-160 38-65 (154)
142 PRK09674 enoyl-CoA hydratase-i 52.4 29 0.00063 28.9 4.7 37 108-144 24-61 (255)
143 cd01427 HAD_like Haloacid deha 52.0 17 0.00038 24.6 2.8 39 114-153 25-63 (139)
144 PRK07799 enoyl-CoA hydratase; 51.7 65 0.0014 26.9 6.7 37 108-144 27-64 (263)
145 COG0062 Uncharacterized conser 51.2 17 0.00036 30.9 3.1 33 109-141 22-61 (203)
146 cd07041 STAS_RsbR_RsbS_like Su 50.5 53 0.0012 23.2 5.2 47 89-143 40-86 (109)
147 PLN02918 pyridoxine (pyridoxam 50.2 9 0.0002 36.9 1.5 32 109-140 108-146 (544)
148 PRK08150 enoyl-CoA hydratase; 50.1 32 0.00069 28.8 4.6 36 108-144 24-59 (255)
149 PF13241 NAD_binding_7: Putati 49.8 11 0.00023 27.4 1.5 16 131-146 8-23 (103)
150 PF01872 RibD_C: RibD C-termin 49.3 16 0.00035 28.7 2.6 30 117-146 122-151 (200)
151 PLN02888 enoyl-CoA hydratase 49.2 37 0.0008 28.7 4.9 37 108-144 32-69 (265)
152 PRK05925 aspartate kinase; Pro 49.1 27 0.00059 32.3 4.4 36 92-138 3-38 (440)
153 PRK05870 enoyl-CoA hydratase; 49.1 35 0.00077 28.3 4.7 37 108-144 25-62 (249)
154 PRK06563 enoyl-CoA hydratase; 49.1 34 0.00073 28.5 4.6 37 108-144 21-58 (255)
155 PRK06143 enoyl-CoA hydratase; 48.3 39 0.00084 28.3 4.9 47 94-144 19-67 (256)
156 PRK06072 enoyl-CoA hydratase; 48.2 37 0.0008 28.2 4.7 37 108-144 22-59 (248)
157 COG1915 Uncharacterized conser 48.1 25 0.00053 33.0 3.9 27 111-137 182-208 (415)
158 PRK07509 enoyl-CoA hydratase; 48.1 74 0.0016 26.4 6.5 37 108-144 25-62 (262)
159 PRK05980 enoyl-CoA hydratase; 48.1 35 0.00076 28.4 4.5 37 108-144 25-63 (260)
160 PF01262 AlaDh_PNT_C: Alanine 47.9 10 0.00022 29.7 1.2 29 131-159 21-50 (168)
161 PRK09245 enoyl-CoA hydratase; 47.2 69 0.0015 26.7 6.2 36 109-144 26-63 (266)
162 PRK05282 (alpha)-aspartyl dipe 47.1 12 0.00027 31.9 1.7 28 133-160 82-109 (233)
163 PRK08252 enoyl-CoA hydratase; 46.8 38 0.00082 28.2 4.5 37 108-144 25-62 (254)
164 PRK07658 enoyl-CoA hydratase; 46.7 45 0.00098 27.6 5.0 37 108-144 23-60 (257)
165 PTZ00174 phosphomannomutase; P 45.7 61 0.0013 26.7 5.6 43 89-137 4-46 (247)
166 PRK07260 enoyl-CoA hydratase; 45.7 74 0.0016 26.4 6.1 37 108-144 24-61 (255)
167 PRK11133 serB phosphoserine ph 45.2 48 0.001 29.4 5.1 38 121-159 189-226 (322)
168 PRK01158 phosphoglycolate phos 44.8 65 0.0014 25.3 5.4 58 90-154 3-60 (230)
169 PF03853 YjeF_N: YjeF-related 44.4 28 0.00062 27.5 3.3 35 115-149 9-46 (169)
170 PRK08329 threonine synthase; V 44.3 79 0.0017 27.8 6.4 56 91-153 72-128 (347)
171 PRK10976 putative hydrolase; P 44.0 60 0.0013 26.3 5.2 57 90-154 2-59 (266)
172 PRK08259 enoyl-CoA hydratase; 43.9 44 0.00095 27.9 4.5 37 108-144 25-62 (254)
173 cd03146 GAT1_Peptidase_E Type 43.8 13 0.00027 30.4 1.3 29 133-161 83-111 (212)
174 cd06844 STAS Sulphate Transpor 43.7 78 0.0017 22.3 5.2 48 89-143 38-85 (100)
175 PRK06494 enoyl-CoA hydratase; 43.7 99 0.0021 25.8 6.6 37 108-144 26-64 (259)
176 TIGR00213 GmhB_yaeD D,D-heptos 43.2 30 0.00066 26.8 3.3 30 115-144 28-57 (176)
177 cd00209 DHFR Dihydrofolate red 43.1 26 0.00056 27.3 2.9 30 116-146 78-107 (158)
178 PRK07511 enoyl-CoA hydratase; 42.3 44 0.00096 27.7 4.3 37 108-144 25-62 (260)
179 TIGR01670 YrbI-phosphatas 3-de 42.2 35 0.00076 26.2 3.5 34 121-155 36-69 (154)
180 PF06506 PrpR_N: Propionate ca 42.2 28 0.0006 27.5 3.0 35 116-155 112-146 (176)
181 PRK06213 enoyl-CoA hydratase; 42.1 50 0.0011 27.0 4.5 46 93-144 14-59 (229)
182 PRK05625 5-amino-6-(5-phosphor 42.0 28 0.00061 28.1 3.0 29 118-146 129-157 (217)
183 cd06558 crotonase-like Crotona 41.9 59 0.0013 25.0 4.7 37 108-144 21-58 (195)
184 COG0561 Cof Predicted hydrolas 41.1 50 0.0011 26.8 4.4 59 89-155 2-61 (264)
185 PRK08788 enoyl-CoA hydratase; 40.9 61 0.0013 28.2 5.1 37 108-144 38-81 (287)
186 PRK13222 phosphoglycolate phos 40.2 49 0.0011 25.7 4.0 40 116-156 96-135 (226)
187 PRK06495 enoyl-CoA hydratase; 40.1 64 0.0014 26.9 4.9 37 108-144 25-62 (257)
188 PLN02600 enoyl-CoA hydratase 40.0 58 0.0013 27.1 4.6 37 108-144 17-55 (251)
189 PRK07938 enoyl-CoA hydratase; 39.6 58 0.0013 27.2 4.6 36 109-144 24-60 (249)
190 TIGR00197 yjeF_nterm yjeF N-te 39.4 34 0.00073 28.1 3.1 33 117-149 33-66 (205)
191 COG1654 BirA Biotin operon rep 39.4 14 0.0003 27.1 0.8 36 97-137 20-55 (79)
192 PRK07468 enoyl-CoA hydratase; 39.4 61 0.0013 27.1 4.7 37 108-144 27-64 (262)
193 PRK07313 phosphopantothenoylcy 39.4 64 0.0014 26.3 4.7 34 91-136 2-35 (182)
194 PRK00192 mannosyl-3-phosphogly 39.3 67 0.0014 26.6 4.9 57 90-154 4-61 (273)
195 TIGR01509 HAD-SF-IA-v3 haloaci 39.1 42 0.00091 24.9 3.4 38 116-155 88-125 (183)
196 TIGR00338 serB phosphoserine p 39.0 44 0.00094 26.2 3.6 41 117-158 89-129 (219)
197 TIGR02370 pyl_corrinoid methyl 38.7 36 0.00077 27.7 3.1 43 112-159 149-193 (197)
198 PRK05920 aromatic acid decarbo 38.6 63 0.0014 27.2 4.7 35 90-136 3-37 (204)
199 TIGR02852 spore_dpaB dipicolin 38.5 59 0.0013 27.1 4.4 35 91-136 1-35 (187)
200 PF12017 Tnp_P_element: Transp 38.5 64 0.0014 27.9 4.8 40 109-155 192-234 (236)
201 TIGR01452 PGP_euk phosphoglyco 38.4 53 0.0012 27.5 4.2 60 89-156 1-63 (279)
202 PRK15126 thiamin pyrimidine py 38.4 75 0.0016 26.0 5.0 57 90-154 2-59 (272)
203 cd00640 Trp-synth-beta_II Tryp 38.3 1.2E+02 0.0026 24.5 6.2 56 91-153 15-74 (244)
204 TIGR01274 ACC_deam 1-aminocycl 38.2 90 0.002 27.1 5.7 59 92-154 32-93 (337)
205 PLN02874 3-hydroxyisobutyryl-C 38.1 1.2E+02 0.0027 27.3 6.7 37 108-144 33-70 (379)
206 PRK07327 enoyl-CoA hydratase; 38.0 1.6E+02 0.0034 24.8 7.0 37 108-144 34-71 (268)
207 cd07043 STAS_anti-anti-sigma_f 38.0 87 0.0019 20.9 4.5 43 90-140 38-80 (99)
208 PRK05562 precorrin-2 dehydroge 37.4 20 0.00043 30.6 1.5 14 132-145 27-40 (223)
209 PF04015 DUF362: Domain of unk 37.1 97 0.0021 24.7 5.3 47 92-141 1-49 (206)
210 PRK07657 enoyl-CoA hydratase; 37.0 68 0.0015 26.7 4.6 37 108-144 26-64 (260)
211 PF03129 HGTP_anticodon: Antic 36.4 42 0.00092 23.1 2.8 29 116-144 39-67 (94)
212 PRK09076 enoyl-CoA hydratase; 36.4 82 0.0018 26.3 5.0 36 108-143 24-61 (258)
213 PF01715 IPPT: IPP transferase 36.2 57 0.0012 27.8 4.1 35 109-144 35-70 (253)
214 PLN02954 phosphoserine phospha 36.1 61 0.0013 25.4 4.0 39 116-155 87-125 (224)
215 PRK06719 precorrin-2 dehydroge 36.0 23 0.0005 28.0 1.6 15 131-145 14-28 (157)
216 PRK03580 carnitinyl-CoA dehydr 35.9 58 0.0013 27.2 4.1 36 109-144 25-62 (261)
217 TIGR01525 ATPase-IB_hvy heavy 35.7 59 0.0013 30.3 4.4 65 90-158 364-429 (556)
218 TIGR01684 viral_ppase viral ph 35.5 1.3E+02 0.0027 27.4 6.3 63 90-157 126-189 (301)
219 KOG3286 Selenoprotein T [Gener 35.5 43 0.00093 29.4 3.3 35 109-144 106-140 (226)
220 COG0123 AcuC Deacetylases, inc 35.4 81 0.0017 28.5 5.1 51 92-142 242-295 (340)
221 COG4750 LicC CTP:phosphocholin 35.2 27 0.00059 30.7 2.0 29 94-137 25-54 (231)
222 PRK06769 hypothetical protein; 35.1 51 0.0011 25.8 3.4 54 89-144 3-59 (173)
223 PLN02887 hydrolase family prot 35.0 81 0.0018 30.5 5.3 44 89-138 307-350 (580)
224 COG1578 Uncharacterized conser 34.9 31 0.00067 31.2 2.4 41 125-165 174-222 (285)
225 PTZ00063 histone deacetylase; 34.9 71 0.0015 30.1 4.8 49 92-143 253-303 (436)
226 PF08645 PNK3P: Polynucleotide 34.8 49 0.0011 26.1 3.3 27 117-143 33-59 (159)
227 PF00850 Hist_deacetyl: Histon 34.7 45 0.00097 29.0 3.3 48 92-139 243-293 (311)
228 PRK08139 enoyl-CoA hydratase; 34.7 70 0.0015 26.9 4.4 37 108-144 33-70 (266)
229 cd03816 GT1_ALG1_like This fam 34.5 1.1E+02 0.0023 27.0 5.7 40 89-139 2-41 (415)
230 PRK12390 1-aminocyclopropane-1 34.4 1.2E+02 0.0026 26.3 5.9 60 91-154 32-94 (337)
231 PRK05864 enoyl-CoA hydratase; 34.3 78 0.0017 26.7 4.6 37 108-144 32-69 (276)
232 TIGR02113 coaC_strep phosphopa 34.3 82 0.0018 25.6 4.6 42 91-144 1-44 (177)
233 TIGR03189 dienoyl_CoA_hyt cycl 34.2 89 0.0019 26.2 4.9 37 108-144 22-59 (251)
234 PRK08305 spoVFB dipicolinate s 34.1 74 0.0016 26.8 4.4 37 89-136 4-40 (196)
235 cd02070 corrinoid_protein_B12- 33.9 44 0.00096 27.0 3.0 43 112-159 147-191 (201)
236 PRK10949 protease 4; Provision 33.8 70 0.0015 31.2 4.7 62 89-163 364-428 (618)
237 PLN02921 naphthoate synthase 33.5 1.5E+02 0.0033 26.3 6.5 56 89-144 63-127 (327)
238 KOG1384 tRNA delta(2)-isopente 33.0 32 0.00069 31.9 2.2 36 110-146 76-112 (348)
239 KOG2436 Acetylglutamate kinase 32.9 1E+02 0.0023 30.0 5.7 50 90-147 94-143 (520)
240 TIGR02886 spore_II_AA anti-sig 32.7 1.3E+02 0.0027 21.1 4.8 48 90-144 39-86 (106)
241 TIGR01488 HAD-SF-IB Haloacid D 32.7 78 0.0017 23.6 3.9 39 117-156 77-115 (177)
242 TIGR01663 PNK-3'Pase polynucle 32.5 46 0.00099 31.9 3.2 31 116-146 200-230 (526)
243 PRK10628 LigB family dioxygena 32.5 62 0.0014 28.1 3.8 41 94-144 113-153 (246)
244 PRK13775 formimidoylglutamase; 32.0 67 0.0014 28.3 4.0 28 112-140 106-133 (328)
245 TIGR01261 hisB_Nterm histidino 31.9 57 0.0012 25.7 3.2 29 116-144 32-60 (161)
246 PRK10717 cysteine synthase A; 31.9 1.7E+02 0.0037 25.3 6.4 56 92-154 29-89 (330)
247 COG0680 HyaD Ni,Fe-hydrogenase 31.7 1E+02 0.0023 24.9 4.7 42 91-138 2-43 (160)
248 TIGR01508 rib_reduct_arch 2,5- 31.3 53 0.0011 26.8 3.0 29 118-146 125-153 (210)
249 TIGR01662 HAD-SF-IIIA HAD-supe 31.3 67 0.0015 23.2 3.3 30 114-143 26-55 (132)
250 PLN02645 phosphoglycolate phos 31.0 75 0.0016 27.3 4.0 59 89-154 27-87 (311)
251 TIGR01486 HAD-SF-IIB-MPGP mann 31.0 1E+02 0.0022 25.1 4.6 54 93-154 2-56 (256)
252 cd02072 Glm_B12_BD B12 binding 30.8 66 0.0014 25.4 3.4 45 111-158 63-114 (128)
253 TIGR00227 ribD_Cterm riboflavi 30.5 57 0.0012 26.0 3.1 29 118-146 130-158 (216)
254 cd01948 EAL EAL domain. This d 30.3 86 0.0019 24.2 3.9 36 90-134 115-150 (240)
255 PRK00726 murG undecaprenyldiph 30.2 1E+02 0.0022 25.8 4.6 38 91-139 2-39 (357)
256 PF04414 tRNA_deacylase: D-ami 30.0 79 0.0017 27.1 3.9 38 109-146 104-146 (213)
257 TIGR01449 PGP_bact 2-phosphogl 29.9 76 0.0016 24.5 3.6 38 117-155 89-126 (213)
258 PF13204 DUF4038: Protein of u 29.9 63 0.0014 27.9 3.4 28 109-136 81-108 (289)
259 PF00162 PGK: Phosphoglycerate 29.8 91 0.002 28.8 4.6 52 88-140 7-58 (384)
260 PRK13774 formimidoylglutamase; 29.8 78 0.0017 27.7 4.0 28 112-140 103-130 (311)
261 PLN03050 pyridoxine (pyridoxam 29.6 66 0.0014 27.5 3.5 25 116-140 38-71 (246)
262 COG0549 ArcC Carbamate kinase 29.5 47 0.001 30.4 2.7 22 119-141 174-195 (312)
263 PLN03214 probable enoyl-CoA hy 29.4 1.2E+02 0.0027 25.8 5.1 46 94-144 24-72 (278)
264 PF04536 TPM: TLP18.3, Psb32 a 29.4 1.2E+02 0.0027 21.4 4.4 26 111-136 3-29 (119)
265 PRK08238 hypothetical protein; 29.1 94 0.002 29.2 4.6 44 109-153 65-111 (479)
266 PF06935 DUF1284: Protein of u 28.9 1.1E+02 0.0023 23.0 4.1 35 109-143 1-36 (103)
267 PF12710 HAD: haloacid dehalog 28.9 59 0.0013 24.4 2.8 35 120-155 96-130 (192)
268 cd01561 CBS_like CBS_like: Thi 28.8 1.8E+02 0.004 24.4 5.9 56 91-153 17-77 (291)
269 PRK05674 gamma-carboxygeranoyl 28.8 97 0.0021 26.1 4.3 37 108-144 28-65 (265)
270 PF08282 Hydrolase_3: haloacid 28.6 1.5E+02 0.0033 22.5 5.0 53 94-154 2-55 (254)
271 PF00070 Pyr_redox: Pyridine n 28.5 40 0.00087 22.8 1.6 14 133-146 2-15 (80)
272 COG1126 GlnQ ABC-type polar am 28.4 1.3E+02 0.0028 26.8 5.0 38 107-144 164-201 (240)
273 TIGR02253 CTE7 HAD superfamily 28.4 92 0.002 24.2 3.8 24 117-140 98-121 (221)
274 PF10237 N6-adenineMlase: Prob 28.1 90 0.0019 25.4 3.8 38 107-145 4-41 (162)
275 TIGR01487 SPP-like sucrose-pho 28.0 1.6E+02 0.0035 23.2 5.2 42 91-138 2-43 (215)
276 PRK11572 copper homeostasis pr 27.9 1E+02 0.0022 27.1 4.3 31 107-138 64-94 (248)
277 cd07766 DHQ_Fe-ADH Dehydroquin 27.7 90 0.0019 26.6 3.9 33 110-145 62-94 (332)
278 COG1366 SpoIIAA Anti-anti-sigm 27.5 1.8E+02 0.004 21.1 5.1 39 90-135 44-82 (117)
279 PRK13776 formimidoylglutamase; 27.5 89 0.0019 27.4 4.0 33 112-145 100-137 (318)
280 PRK13772 formimidoylglutamase; 27.5 91 0.002 27.3 4.0 28 112-140 99-126 (314)
281 PRK09552 mtnX 2-hydroxy-3-keto 27.4 78 0.0017 25.2 3.4 28 117-144 78-105 (219)
282 PHA03398 viral phosphatase sup 27.4 1.9E+02 0.0041 26.3 6.0 60 90-156 128-190 (303)
283 PRK10826 2-deoxyglucose-6-phos 27.4 83 0.0018 24.9 3.5 40 117-157 96-135 (222)
284 TIGR01428 HAD_type_II 2-haloal 27.2 1.1E+02 0.0023 23.7 3.9 38 117-155 96-133 (198)
285 TIGR01484 HAD-SF-IIB HAD-super 27.2 79 0.0017 24.5 3.2 25 116-140 20-44 (204)
286 smart00463 SMR Small MutS-rela 26.6 1.5E+02 0.0032 20.3 4.2 31 113-143 13-45 (80)
287 TIGR01656 Histidinol-ppas hist 26.6 80 0.0017 23.8 3.1 26 116-141 30-55 (147)
288 PF00491 Arginase: Arginase fa 26.5 1.3E+02 0.0028 25.1 4.6 29 111-140 62-90 (277)
289 TIGR01681 HAD-SF-IIIC HAD-supe 26.4 1.2E+02 0.0026 22.6 4.1 26 113-138 29-54 (128)
290 PF01522 Polysacc_deac_1: Poly 26.4 1.1E+02 0.0024 21.5 3.6 22 113-134 41-62 (123)
291 PRK08321 naphthoate synthase; 26.3 1.1E+02 0.0024 26.4 4.3 32 108-139 47-79 (302)
292 PRK08942 D,D-heptose 1,7-bisph 26.3 85 0.0018 24.3 3.3 28 116-143 32-59 (181)
293 TIGR00174 miaA tRNA isopenteny 26.2 77 0.0017 28.0 3.3 34 110-144 68-102 (287)
294 KOG3350 Uncharacterized conser 26.2 77 0.0017 27.7 3.3 40 96-136 42-81 (217)
295 TIGR00326 eubact_ribD riboflav 26.0 63 0.0014 28.4 2.8 30 117-146 260-289 (344)
296 cd03527 RuBisCO_small Ribulose 25.9 83 0.0018 24.1 3.1 32 116-147 15-46 (99)
297 PF13579 Glyco_trans_4_4: Glyc 25.7 1.2E+02 0.0026 21.0 3.6 24 119-142 8-31 (160)
298 PRK08184 benzoyl-CoA-dihydrodi 25.7 1.3E+02 0.0027 29.0 4.9 37 108-144 47-86 (550)
299 cd03145 GAT1_cyanophycinase Ty 25.6 37 0.00079 28.0 1.2 28 133-160 86-113 (217)
300 TIGR01497 kdpB K+-transporting 25.6 99 0.0021 30.6 4.2 42 116-158 449-490 (675)
301 PF13419 HAD_2: Haloacid dehal 25.5 1.1E+02 0.0024 21.8 3.5 37 117-154 81-117 (176)
302 PF00378 ECH: Enoyl-CoA hydrat 25.4 85 0.0018 25.6 3.3 35 109-143 21-56 (245)
303 TIGR01229 rocF_arginase argina 25.3 1E+02 0.0023 26.5 4.0 32 113-145 67-103 (300)
304 TIGR03350 type_VI_ompA type VI 25.3 3E+02 0.0065 20.7 6.1 43 91-133 22-64 (137)
305 KOG1615 Phosphoserine phosphat 25.3 91 0.002 27.5 3.5 35 118-155 93-129 (227)
306 TIGR00099 Cof-subfamily Cof su 25.3 95 0.0021 25.1 3.5 53 94-154 3-56 (256)
307 TIGR00433 bioB biotin syntheta 25.1 1E+02 0.0023 25.6 3.8 27 116-142 65-92 (296)
308 PRK13288 pyrophosphatase PpaX; 25.0 1E+02 0.0022 24.1 3.6 39 116-155 85-123 (214)
309 PRK05990 precorrin-2 C(20)-met 25.0 1.3E+02 0.0027 25.3 4.3 31 114-144 83-113 (241)
310 PF00101 RuBisCO_small: Ribulo 24.8 94 0.002 23.7 3.2 32 116-147 14-45 (99)
311 PF03932 CutC: CutC family; I 24.7 1E+02 0.0023 26.0 3.7 31 107-138 63-93 (201)
312 TIGR01544 HAD-SF-IE haloacid d 24.6 1.4E+02 0.0031 26.4 4.7 41 97-140 96-148 (277)
313 TIGR01139 cysK cysteine syntha 24.6 2.4E+02 0.0052 23.8 5.9 56 91-153 21-81 (298)
314 PLN02165 adenylate isopentenyl 24.6 1E+02 0.0022 28.1 3.9 33 110-143 113-146 (334)
315 COG0420 SbcD DNA repair exonuc 24.6 1.4E+02 0.0031 26.1 4.7 48 94-144 43-90 (390)
316 PRK09967 putative outer membra 24.5 2.5E+02 0.0054 22.5 5.7 45 93-137 46-90 (160)
317 PRK03995 hypothetical protein; 24.5 1.1E+02 0.0025 26.9 4.1 39 108-146 155-197 (267)
318 TIGR00300 conserved hypothetic 24.5 1E+02 0.0022 29.3 3.9 26 112-137 184-209 (407)
319 cd00307 RuBisCO_small_like Rib 24.5 93 0.002 23.1 3.0 30 116-145 2-31 (84)
320 cd06542 GH18_EndoS-like Endo-b 24.4 1E+02 0.0022 25.2 3.6 29 114-142 49-77 (255)
321 PF13304 AAA_21: AAA domain; P 24.3 1.7E+02 0.0036 21.3 4.3 29 107-135 267-295 (303)
322 PLN02840 tRNA dimethylallyltra 24.3 84 0.0018 29.5 3.4 32 110-142 90-122 (421)
323 KOG2965 Arginase [Amino acid t 24.2 1.1E+02 0.0024 28.1 4.0 26 113-139 86-111 (318)
324 PRK01722 formimidoylglutamase; 24.2 1.1E+02 0.0024 26.6 3.9 27 112-139 100-126 (320)
325 PLN02423 phosphomannomutase 24.1 2.1E+02 0.0046 23.7 5.5 43 89-138 5-48 (245)
326 PTZ00346 histone deacetylase; 24.1 1.4E+02 0.0029 28.4 4.7 51 91-144 270-326 (429)
327 cd00758 MoCF_BD MoCF_BD: molyb 24.1 83 0.0018 23.7 2.8 23 115-138 45-67 (133)
328 PF01242 PTPS: 6-pyruvoyl tetr 24.0 2E+02 0.0043 21.3 4.8 36 92-128 30-65 (123)
329 TIGR02009 PGMB-YQAB-SF beta-ph 24.0 88 0.0019 23.5 2.9 22 117-138 92-113 (185)
330 PRK13773 formimidoylglutamase; 24.0 1.1E+02 0.0024 26.9 3.9 32 113-145 103-139 (324)
331 cd07019 S49_SppA_1 Signal pept 23.9 3.4E+02 0.0073 22.1 6.5 66 89-164 38-103 (211)
332 PRK03669 mannosyl-3-phosphogly 23.9 1.4E+02 0.003 24.7 4.3 57 90-154 7-64 (271)
333 PLN02770 haloacid dehalogenase 23.9 1.1E+02 0.0023 25.2 3.6 38 117-155 112-149 (248)
334 TIGR03351 PhnX-like phosphonat 23.7 1E+02 0.0023 24.0 3.4 37 117-154 91-127 (220)
335 PF00464 SHMT: Serine hydroxym 23.6 81 0.0018 29.2 3.1 50 107-169 153-202 (399)
336 PF13738 Pyr_redox_3: Pyridine 23.5 48 0.001 25.2 1.4 14 132-145 169-182 (203)
337 TIGR01668 YqeG_hyp_ppase HAD s 23.4 1.7E+02 0.0037 22.8 4.5 45 90-139 25-69 (170)
338 cd00861 ProRS_anticodon_short 23.3 55 0.0012 22.3 1.5 28 117-144 42-69 (94)
339 cd01452 VWA_26S_proteasome_sub 23.3 99 0.0021 25.6 3.3 46 91-140 6-57 (187)
340 TIGR01482 SPP-subfamily Sucros 23.2 1E+02 0.0022 24.0 3.3 37 95-137 3-39 (225)
341 TIGR01458 HAD-SF-IIA-hyp3 HAD- 23.2 1.3E+02 0.0028 25.2 4.0 61 91-154 2-64 (257)
342 TIGR01454 AHBA_synth_RP 3-amin 23.2 1.1E+02 0.0025 23.7 3.5 26 116-141 78-103 (205)
343 TIGR01549 HAD-SF-IA-v1 haloaci 23.2 1.1E+02 0.0024 22.4 3.2 27 116-142 67-93 (154)
344 cd07014 S49_SppA Signal peptid 23.2 3.7E+02 0.0079 21.0 6.4 62 89-160 39-100 (177)
345 smart00052 EAL Putative diguan 23.2 1.2E+02 0.0027 23.4 3.6 42 91-141 117-159 (241)
346 TIGR02137 HSK-PSP phosphoserin 23.1 1.5E+02 0.0032 24.2 4.2 37 120-158 75-111 (203)
347 PF11495 Regulator_TrmB: Archa 23.1 90 0.0019 25.8 3.0 26 113-138 33-58 (233)
348 smart00775 LNS2 LNS2 domain. T 23.1 1.1E+02 0.0023 24.1 3.3 28 116-143 30-57 (157)
349 PRK05617 3-hydroxyisobutyryl-C 23.1 1.5E+02 0.0033 26.2 4.6 37 108-144 25-63 (342)
350 COG2908 Uncharacterized protei 23.0 1.3E+02 0.0028 26.5 4.1 65 95-159 33-97 (237)
351 cd03785 GT1_MurG MurG is an N- 22.9 1.6E+02 0.0035 24.2 4.4 24 116-139 14-37 (350)
352 PF02099 Josephin: Josephin; 22.9 1.1E+02 0.0024 24.8 3.4 42 93-137 112-157 (157)
353 TIGR02463 MPGP_rel mannosyl-3- 22.8 1.9E+02 0.0042 22.7 4.8 55 93-154 2-56 (221)
354 TIGR01136 cysKM cysteine synth 22.7 2.7E+02 0.0057 23.7 5.8 56 91-153 22-82 (299)
355 TIGR01133 murG undecaprenyldip 22.7 1.6E+02 0.0035 24.1 4.4 18 120-137 19-36 (348)
356 TIGR03333 salvage_mtnX 2-hydro 22.7 94 0.002 24.8 3.0 29 116-144 73-101 (214)
357 PF13528 Glyco_trans_1_3: Glyc 22.6 1.6E+02 0.0036 24.0 4.5 38 91-140 1-38 (318)
358 TIGR03123 one_C_unchar_1 proba 22.5 1.2E+02 0.0026 27.3 3.9 46 116-162 263-310 (318)
359 TIGR00377 ant_ant_sig anti-ant 22.5 1.9E+02 0.0042 20.0 4.2 49 89-144 42-90 (108)
360 PF01975 SurE: Survival protei 22.5 67 0.0015 26.6 2.2 27 107-136 8-34 (196)
361 TIGR01227 hutG formimidoylglut 22.4 1.3E+02 0.0028 26.1 4.0 28 112-140 94-121 (307)
362 TIGR01511 ATPase-IB1_Cu copper 22.4 1.3E+02 0.0029 28.3 4.3 61 90-154 385-445 (562)
363 PRK10964 ADP-heptose:LPS hepto 22.3 1.1E+02 0.0024 25.8 3.4 27 109-138 193-219 (322)
364 cd00860 ThrRS_anticodon ThrRS 22.2 1.1E+02 0.0023 20.4 2.8 24 116-139 38-61 (91)
365 TIGR01357 aroB 3-dehydroquinat 22.0 1.1E+02 0.0023 26.7 3.4 33 111-143 63-95 (344)
366 TIGR00261 traB pheromone shutd 22.0 1.2E+02 0.0025 28.2 3.7 32 111-142 177-208 (380)
367 PRK09107 acetolactate synthase 21.9 72 0.0016 30.1 2.5 30 111-144 198-227 (595)
368 PRK08883 ribulose-phosphate 3- 21.8 3.3E+02 0.0072 22.8 6.2 60 93-154 131-190 (220)
369 cd06595 GH31_xylosidase_XylS-l 21.7 56 0.0012 28.0 1.6 30 107-136 65-94 (292)
370 PLN03034 phosphoglycerate kina 21.7 2.4E+02 0.0053 27.2 5.9 50 87-136 89-138 (481)
371 TIGR02069 cyanophycinase cyano 21.7 51 0.0011 28.1 1.3 27 133-159 85-111 (250)
372 TIGR01166 cbiO cobalt transpor 21.6 2.5E+02 0.0054 21.7 5.1 28 108-135 156-183 (190)
373 PRK05579 bifunctional phosphop 21.6 1.8E+02 0.0038 26.8 4.8 36 89-136 5-40 (399)
374 PF06995 Phage_P2_GpU: Phage P 21.5 88 0.0019 23.5 2.5 42 94-142 44-85 (121)
375 PF01904 DUF72: Protein of unk 21.5 2.8E+02 0.006 23.1 5.6 47 92-138 167-213 (230)
376 COG1058 CinA Predicted nucleot 21.3 71 0.0015 28.1 2.2 29 115-144 47-76 (255)
377 PF06258 Mito_fiss_Elm1: Mitoc 21.3 2.8E+02 0.0062 24.4 5.9 42 90-135 146-188 (311)
378 COG0396 sufC Cysteine desulfur 21.2 2.1E+02 0.0045 25.6 5.0 35 106-140 171-205 (251)
379 cd08549 G1PDH_related Glycerol 21.2 1.7E+02 0.0037 25.5 4.5 28 110-141 65-92 (332)
380 PRK14729 miaA tRNA delta(2)-is 21.1 1.1E+02 0.0024 27.3 3.3 34 110-144 72-106 (300)
381 TIGR03200 dearomat_oah 6-oxocy 21.0 1.9E+02 0.0041 26.8 4.9 36 109-144 51-88 (360)
382 cd01562 Thr-dehyd Threonine de 21.0 1.9E+02 0.0042 24.1 4.6 56 92-154 33-90 (304)
383 smart00052 EAL Putative diguan 21.0 86 0.0019 24.3 2.4 64 94-162 171-234 (241)
384 TIGR01548 HAD-SF-IA-hyp1 haloa 20.9 1E+02 0.0022 23.9 2.8 38 119-157 112-149 (197)
385 PF01963 TraB: TraB family; I 20.9 1.5E+02 0.0032 23.9 3.8 28 115-142 213-240 (259)
386 PRK13685 hypothetical protein; 20.9 1.7E+02 0.0038 25.3 4.5 46 92-141 92-140 (326)
387 PF00590 TP_methylase: Tetrapy 20.9 2E+02 0.0044 22.3 4.5 31 114-144 59-91 (210)
388 PF01713 Smr: Smr domain; Int 20.9 2E+02 0.0043 19.8 4.0 27 113-139 10-37 (83)
389 cd07018 S49_SppA_67K_type Sign 20.8 2.8E+02 0.0062 22.7 5.5 66 89-165 46-111 (222)
390 TIGR01138 cysM cysteine syntha 20.8 3.1E+02 0.0068 23.4 5.9 56 91-153 23-83 (290)
391 PF00563 EAL: EAL domain; Int 20.8 1.1E+02 0.0023 23.7 2.8 63 94-162 172-234 (236)
392 PF00465 Fe-ADH: Iron-containi 20.7 1.2E+02 0.0027 26.4 3.5 49 110-161 62-111 (366)
393 PRK10565 putative carbohydrate 20.7 1E+02 0.0022 29.1 3.1 33 117-149 48-81 (508)
394 PRK09754 phenylpropionate diox 20.6 1E+02 0.0022 26.9 3.0 54 89-144 100-158 (396)
395 PF09837 DUF2064: Uncharacteri 20.4 1.3E+02 0.0027 23.0 3.2 22 116-138 47-68 (122)
396 TIGR01501 MthylAspMutase methy 20.3 1.1E+02 0.0024 24.3 2.8 45 111-158 65-116 (134)
397 cd03275 ABC_SMC1_euk Eukaryoti 20.3 1.9E+02 0.004 23.8 4.3 35 107-141 187-221 (247)
398 COG0546 Gph Predicted phosphat 20.3 1.6E+02 0.0034 23.7 3.8 47 115-162 91-137 (220)
399 cd07022 S49_Sppa_36K_type Sign 20.3 4E+02 0.0087 21.6 6.2 64 89-163 42-105 (214)
400 TIGR01744 XPRTase xanthine pho 20.2 2.1E+02 0.0045 23.6 4.6 45 110-154 30-75 (191)
401 PF08423 Rad51: Rad51; InterP 20.1 94 0.002 26.3 2.6 24 112-136 160-183 (256)
402 PLN02282 phosphoglycerate kina 20.1 2.9E+02 0.0062 25.9 5.9 49 88-136 15-63 (401)
403 TIGR01990 bPGM beta-phosphoglu 20.0 1.6E+02 0.0034 22.1 3.6 37 117-156 91-127 (185)
No 1
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.96 E-value=8.4e-30 Score=216.82 Aligned_cols=79 Identities=51% Similarity=0.862 Sum_probs=76.1
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
+|||||||||||+|+|++++|||++.++++|++|+++.+.|+||+|||||||+||||+.+. .|++|+++|||||+||||
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVM 82 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999665 599999999999999997
No 2
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.95 E-value=3.7e-29 Score=212.54 Aligned_cols=80 Identities=38% Similarity=0.664 Sum_probs=75.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
+|||||||||||+|++++++++|++.+++||++|+++.+.|+||+|||||||+|||......+|++|+++||||||||||
T Consensus 14 ~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~i 93 (249)
T PRK14556 14 KLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMI 93 (249)
T ss_pred hhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999665323689999999999999997
No 3
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.79 E-value=1.4e-19 Score=151.97 Aligned_cols=79 Identities=48% Similarity=0.723 Sum_probs=74.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
+|+|||+||||++|.++++.++|++.++++|++|+++.+.|+||+||+||||+|||.. +++.|++|..+|+|||++|+|
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~-a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHH-HHhcCCChHHHHHHHHHHHHH
Confidence 6999999999999998777789999999999999999999999999999999999965 567999999999999999987
No 4
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.53 E-value=1.3e-14 Score=118.52 Aligned_cols=75 Identities=40% Similarity=0.703 Sum_probs=67.0
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
|||||||+|++|.+++...+|.+.++++|++|+++++.|+||+||+|||+++||..+ .++++..+|++|+.+++|
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~---~~~~~~~~d~ig~~~~~l 75 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVI 75 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc---cCCChHHHHHHHHHHHHH
Confidence 699999999999876556799999999999999999999999999999999999764 357788999999988765
No 5
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.49 E-value=2.6e-14 Score=125.05 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=70.5
Q ss_pred EEEEEeecceecCCCC---CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC----hhhhhhhhhh----cCCCCchhhhh
Q 030876 92 RVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGG----NIFRGASAAG----NSGLDRSSADY 160 (170)
Q Consensus 92 RVLLKLSGEaLagd~~---~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG----NI~RG~~~Ar----~lGidrataDy 160 (170)
||||||||++|.++++ ..++.+.+++.|++|+++++.||||+||.|+| |+||+..+++ ..++|+..||+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 7999999999997664 67999999999999999999999999999999 9999977542 47899999999
Q ss_pred hhheeeee
Q 030876 161 IGYFLLIL 168 (170)
Q Consensus 161 IGMLATvi 168 (170)
+||++|+|
T Consensus 81 ~G~ig~~~ 88 (308)
T cd04235 81 QGMIGYML 88 (308)
T ss_pred hHHHHHHH
Confidence 99999987
No 6
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.41 E-value=3.4e-13 Score=110.79 Aligned_cols=78 Identities=53% Similarity=0.897 Sum_probs=69.5
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
|+|+|+||+|.++..++...+|.+.++++|++|+++.+.|++++||+|||+++||+. +++.+.++...|++|+++|++
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l 78 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVI 78 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHH
Confidence 789999999999986545568999999999999999988999999999999999987 566888887789999998864
No 7
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.38 E-value=2.1e-13 Score=110.99 Aligned_cols=61 Identities=23% Similarity=0.459 Sum_probs=48.3
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChh---hhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI---FRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI---~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
||||+|+.+. + +..+-+++++.. |+||+||+||||+ ||+.. +++|++|..+|+|||+||+|
T Consensus 1 vvKiGGsl~~-------~---~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~--~~~g~~~~~ad~mgilat~~ 64 (203)
T cd04240 1 VVKIGGSLIR-------E---AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQ--ERKGLSDAAAHWMAILAMEQ 64 (203)
T ss_pred CEEEcccccc-------c---HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHH--HHcCCChHHHHHHHHHHHHH
Confidence 6899999752 2 445555555543 7999999999999 66655 47999999999999999986
No 8
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.36 E-value=1.3e-12 Score=106.11 Aligned_cols=77 Identities=56% Similarity=0.923 Sum_probs=67.6
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
||+|+|++|.+|..++...+|.+.++++|++|+++.+.|++++||+|||+++|++... ..|+++...|++|++++++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l 77 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVM 77 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHH
Confidence 5899999999998655456899999999999999999999999999999999998743 3678888899999998753
No 9
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.35 E-value=1.3e-12 Score=107.01 Aligned_cols=77 Identities=60% Similarity=0.987 Sum_probs=67.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
|++|+||+|+++..++...+|.+.++++|++|+++.+.|++++||+|||+++||... ++.+..|...|++||+++++
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~-~~~~~~~~~~d~~g~~~~~~ 77 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASA-AEAGMDRATADYMGMLATVI 77 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchh-hhcCCCchhhhHHHHHHHHH
Confidence 579999999999866555689999999999999999889999999999999999554 46888898999999998764
No 10
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.26 E-value=7.4e-12 Score=101.80 Aligned_cols=72 Identities=29% Similarity=0.454 Sum_probs=62.7
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCCchhhhhhhheeeee
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGidrataDyIGMLATvi 168 (170)
|+|+||+|++|...+ +.+.++++|++|+++.+ |++++||.|||+++|.+. .++++++++..+|++|+.+|++
T Consensus 1 ~iViKlGGs~l~~~~----~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~l 73 (221)
T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRL 73 (221)
T ss_pred CEEEEeccceeCCCC----ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHH
Confidence 789999999996432 88999999999999876 789999999999999985 6667888888899999998754
No 11
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.21 E-value=2.3e-11 Score=99.17 Aligned_cols=75 Identities=55% Similarity=0.894 Sum_probs=65.7
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeee
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi 168 (170)
|+|+||+|..|..+++ .+|.+.++++|++|+++.+.|+++.||+|||.++|++.. ...++.+..+|++|++++++
T Consensus 1 ~iViKiGGs~l~~~~~-~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~-~~~~~~~~~~~~~~~~~~~l 75 (229)
T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIA-AARGMPRATADYIGMLATVM 75 (229)
T ss_pred CEEEEECcceecCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHH-hhcCCChhhHHHHHHHHHHH
Confidence 6899999999986544 789999999999999999999999999999999999874 24677788899999988753
No 12
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.15 E-value=4.4e-11 Score=96.90 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=62.3
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCCchhhhhhhheeeee
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGidrataDyIGMLATvi 168 (170)
+|+||+|++|..++ |.+.++++|++|+++.+. ++++||+|||+++|.|. .++++++.+...|++|+.++++
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~l 72 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRL 72 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHH
Confidence 58999999998542 899999999999999887 89999999999999984 6677888888999999988654
No 13
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.08 E-value=1.7e-10 Score=101.69 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=68.2
Q ss_pred eEEEEEeecceecCCCCCCCCH---HHHHHHHHHHHHHHhCCcEEEEEEcCCh----hhhhhhhhhcCC-----CCchhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDP---KITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSG-----LDRSSA 158 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~---~~l~~iA~eIkel~~~GvqIAIVVGGGN----I~RG~~~Ar~lG-----idrata 158 (170)
|||||+|+|++|.+++..+.+. +.+++.|++|+++.+.||||+||.|+|+ ++|+...+++.+ +|+..|
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a 82 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhh
Confidence 6999999999999876666555 5899999999999999999999999999 999976554445 899999
Q ss_pred hhhhheeeee
Q 030876 159 DYIGYFLLIL 168 (170)
Q Consensus 159 DyIGMLATvi 168 (170)
|+.||++++|
T Consensus 83 ~sqG~igy~l 92 (313)
T PRK12454 83 MTQGWIGYMI 92 (313)
T ss_pred hhhHHHHHHH
Confidence 9999998875
No 14
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.07 E-value=1.6e-10 Score=101.09 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=65.6
Q ss_pred eEEEEEeecceecCCCCC---CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhh--------hcCCCCchhhh
Q 030876 91 QRVLLKVSGEALAGDHTQ---NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA--------GNSGLDRSSAD 159 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~---giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~A--------r~lGidrataD 159 (170)
|||||||+|++|..+.+. +++.+.++++|++|+++++.||||+||.|||+.++...+. ...+++...|+
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~ 80 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAM 80 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHh
Confidence 699999999999843222 4778999999999999999999999999999999986431 11457889999
Q ss_pred hhhheeeee
Q 030876 160 YIGYFLLIL 168 (170)
Q Consensus 160 yIGMLATvi 168 (170)
..||++++|
T Consensus 81 ~qg~lg~~~ 89 (310)
T TIGR00746 81 SQGMIGYML 89 (310)
T ss_pred hHHHHHHHH
Confidence 999998865
No 15
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.07 E-value=1.6e-10 Score=100.48 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=65.4
Q ss_pred ceEEEEEeecceecCCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEEcC----Chhhhhhhhhhc-------CCCCchh
Q 030876 90 WQRVLLKVSGEALAGDHTQN-IDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGN-------SGLDRSS 157 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~g-iD~~~l~~iA~eIkel~~~GvqIAIVVGG----GNI~RG~~~Ar~-------lGidrat 157 (170)
++||||||+|++|..+++.+ +|.+.++.+|++|+++++.|+||+||.|| |+++++...... +.+++..
T Consensus 2 ~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK12353 2 MKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVCG 81 (314)
T ss_pred CcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHHH
Confidence 57999999999999765433 99999999999999999999999999999 999999653321 2356777
Q ss_pred hhhhhheeeee
Q 030876 158 ADYIGYFLLIL 168 (170)
Q Consensus 158 aDyIGMLATvi 168 (170)
++..||+++.+
T Consensus 82 a~~qg~l~~~l 92 (314)
T PRK12353 82 AMSQGYIGYHL 92 (314)
T ss_pred HHHhHHHHHHH
Confidence 88899887743
No 16
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.02 E-value=3.5e-10 Score=96.11 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=61.3
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCCchhhhhhhheeeee
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGYFLLIL 168 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGidrataDyIGMLATvi 168 (170)
+||||+|++|..+ +.+.++++|++|+++.+ +++++||+|||+++|++. .++++|+++..+|++||.+|.+
T Consensus 33 ~ViKiGGSvitdk-----~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~l 103 (262)
T cd04255 33 NVVKIGGQSIIDR-----GAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQ 103 (262)
T ss_pred EEEEeccceecCC-----cHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 7999999999754 35789999999999988 699999999999999865 4456899999999999998864
No 17
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=98.61 E-value=8.4e-08 Score=85.57 Aligned_cols=56 Identities=20% Similarity=0.455 Sum_probs=50.9
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
+++|||+|++|++|..+ +.++|++.+..+|++|+++.+.|+||.||+||| +++|..
T Consensus 4 ~~kriVIKiGgs~L~~~-~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~ 59 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPH-HQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYH 59 (368)
T ss_pred CCcEEEEEEchhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCcc
Confidence 57899999999999864 457999999999999999999999999999999 888873
No 18
>PTZ00489 glutamate 5-kinase; Provisional
Probab=98.61 E-value=7.2e-08 Score=82.42 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=57.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhh---hhcCCCCchhhhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA---AGNSGLDRSSADYIGY 163 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~---Ar~lGidrataDyIGM 163 (170)
++|||||||+|+++..+ ..++...+..++++|+++.+ ++||.||.+|+ +++|+.. .+....++..++.+|+
T Consensus 7 ~~~riVIKlG~Svit~~--~~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~~~~~~~~~~~qa~aaiGq 80 (264)
T PTZ00489 7 SVKRIVVKVGSSILVDN--QEIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKKEMDKSYVPNKQALASMGQ 80 (264)
T ss_pred cCCEEEEEeccceeeCC--CCcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhcCCCccccHHHHHHHHhCH
Confidence 47999999999999853 25899999999999999987 79999999877 9999762 2223335666888887
No 19
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=98.59 E-value=4.7e-08 Score=80.34 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=56.4
Q ss_pred EEEEEeecceecCCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC--chhhhhhhheeee
Q 030876 92 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD--RSSADYIGYFLLI 167 (170)
Q Consensus 92 RVLLKLSGEaLagd~-~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid--rataDyIGMLATv 167 (170)
.|||||+|++|..++ ...+|.+.+++++++|+++. |++++||.|||+++++.. +++|++ +...|..||..|.
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~--~~~g~~~g~~~~~~~~l~~~~ 75 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKA--KEYGLPDGDGSFSAEGVAETH 75 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHH--HHhCCCcCCCchhhhhHHHHH
Confidence 379999999997543 34699999999999999987 899999999999988743 346776 3445666665543
No 20
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=98.41 E-value=5.5e-07 Score=79.63 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=44.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
+|||+||+|++|..+++ .+|.+.+..+|++|+++.+.|++|.||.|||.
T Consensus 1 ~riVIKiGgs~l~~~~~-~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~ 49 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSG-SLDRSHIAELVEQVAALHAAGHEVVIVSSGAI 49 (363)
T ss_pred CeEEEEeccceEeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 58999999999986543 39999999999999999999999999999984
No 21
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=98.21 E-value=2.4e-06 Score=75.72 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=47.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~ 145 (170)
+++|||+||+|.+|..+ +..+|++.+.++|++|+++.+.|++|.||.||+ +..|.
T Consensus 7 ~~~~iVIKiGGs~l~~~-~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-i~~g~ 61 (372)
T PRK05429 7 DARRIVVKVGSSLLTGG-GGGLDRARIAELARQIAALRAAGHEVVLVSSGA-VAAGR 61 (372)
T ss_pred hCCEEEEEeChhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-hhhhH
Confidence 46899999999999854 456999999999999999999999999999774 55444
No 22
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=98.12 E-value=4.6e-06 Score=66.73 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=43.1
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA 147 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~ 147 (170)
|++|+||+|+++... +.+ +.+++++|+.+.+.|+++.||.|||.+.+....
T Consensus 1 k~~ViK~GGs~l~~~-----~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~ 51 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDK-----DEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLE 51 (242)
T ss_dssp SEEEEEE-HHGHSSH-----SHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECchhhCCc-----hHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHH
Confidence 689999999999632 235 999999999999999999999999999888653
No 23
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=98.11 E-value=6.7e-06 Score=70.75 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=44.4
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
+.|||||||+++.|..+++..+|.+.+.++|++|+++++.|+||.+|+.|.
T Consensus 7 ~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGA 57 (284)
T cd04256 7 HAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGA 57 (284)
T ss_pred cCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCc
Confidence 368999999999998655447999999999999999999999999777654
No 24
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=98.10 E-value=7.1e-06 Score=68.22 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.1
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
|||+|++|.++... +..++.+.++++|++|+++.+.|+++.||+||+
T Consensus 1 ~iViK~GGs~i~~~-~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~ 47 (251)
T cd04242 1 RIVVKVGSSLLTDE-DGGLDLGRLASLVEQIAELRNQGKEVILVSSGA 47 (251)
T ss_pred CEEEEeCCCeeeCC-CCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 78999999999854 334789999999999999999999999999753
No 25
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=97.94 E-value=1.1e-05 Score=70.61 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=54.3
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh-hh-hhhcCCC----Cchhhhhhhhe
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-AS-AAGNSGL----DRSSADYIGYF 164 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG-~~-~Ar~lGi----drataDyIGML 164 (170)
+.||+|++|..+. |.+.++++|++|+++.+.|++++||+|||.-+.. +. +++ .|+ +....|+++++
T Consensus 1 ~~iViK~GGs~~~-------~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~-~~~~~~~~~~~~~~i~~~ 72 (401)
T TIGR00656 1 ELIVQKFGGTSVG-------SGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISE-KAIRDAITPRERDELVSH 72 (401)
T ss_pred CcEEEEECCcCcC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHH-HHhccCCChHHHHHHhhH
Confidence 4689999999985 5678999999999999999999999999876666 32 332 223 44457999888
Q ss_pred eeee
Q 030876 165 LLIL 168 (170)
Q Consensus 165 ATvi 168 (170)
++++
T Consensus 73 Ge~~ 76 (401)
T TIGR00656 73 GERL 76 (401)
T ss_pred HHHH
Confidence 7654
No 26
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=97.93 E-value=1.4e-05 Score=64.17 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=49.7
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhh--------cCCCCchhhhhhhhee
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG--------NSGLDRSSADYIGYFL 165 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar--------~lGidrataDyIGMLA 165 (170)
|+||+|+++. |.+.+++++++|+++.+.|++++||+|||...+...... ....+....|++..++
T Consensus 1 ViKiGGs~l~-------~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T cd02115 1 VIKFGGSSVS-------SEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248)
T ss_pred CEeeCccccC-------CHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH
Confidence 6899999985 346899999999999999999999999999998853211 1334455566666554
No 27
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=97.88 E-value=1.9e-05 Score=64.80 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=46.3
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc-CChhhhhhh-hhhcCC--CCchhhhhhh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGAS-AAGNSG--LDRSSADYIG 162 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG-GGNI~RG~~-~Ar~lG--idrataDyIG 162 (170)
||+|++|++|. |++.+++++++|+++.+.|+++.||+| ||...+.+. ..+... .++...|.+.
T Consensus 2 iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~ 68 (239)
T cd04246 2 IVQKFGGTSVA-------DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLL 68 (239)
T ss_pred EEEEECccccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 79999999985 568999999999999999999999999 466555543 322111 2455555553
No 28
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=97.88 E-value=2e-05 Score=64.80 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=39.8
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC-Chhhhhh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA 145 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG-GNI~RG~ 145 (170)
||+|++|++|. |++.+++++++|+++.+.|+++.||+|| |.+.+..
T Consensus 2 iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l 48 (239)
T cd04261 2 IVQKFGGTSVA-------SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDEL 48 (239)
T ss_pred EEEEECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHH
Confidence 79999999983 5789999999999999999999999997 5555554
No 29
>PRK06635 aspartate kinase; Reviewed
Probab=97.80 E-value=3.4e-05 Score=67.58 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=41.1
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
+|+|+|++|++|. |++.+++++++|+++.+.|++++||+|||.-+..
T Consensus 2 ~~iViK~GGs~l~-------~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~ 48 (404)
T PRK06635 2 ALIVQKFGGTSVG-------DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTD 48 (404)
T ss_pred CeEEEeECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHH
Confidence 4799999999994 6789999999999999999999999998655544
No 30
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=97.73 E-value=8.9e-05 Score=62.91 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=41.8
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.+|||+|++|..|..+ +..+|.+.++++|++|+++.+.|++|.||+=|
T Consensus 9 ~~~iViK~Ggs~l~~~-~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 9 AKRIVIKVGSSTLSYE-NGKINLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred CCEEEEEeCCCeeeCC-CCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 4689999999999843 34789999999999999999999999988544
No 31
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=97.61 E-value=0.00012 Score=70.17 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=43.6
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
+.|||||||+|..|..+ +..+|.+.+.++|++|+++.+.|+||.||+.|+
T Consensus 6 ~~~~iViKiGss~lt~~-~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA 55 (715)
T TIGR01092 6 DVKRIVVKVGTAVVTRG-DGRLALGRLGSICEQLSELNSDGREVILVTSGA 55 (715)
T ss_pred cCCEEEEEeCcceeECC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEccch
Confidence 36899999999999854 356999999999999999999999999877654
No 32
>PRK07431 aspartate kinase; Provisional
Probab=97.58 E-value=9.8e-05 Score=68.28 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=43.6
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc-CChhhhhhh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGAS 146 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG-GGNI~RG~~ 146 (170)
.+|+|++|.++. |++.++++|++|+++.+.|++++||+| ||++.+...
T Consensus 3 ~iViKfGGss~~-------~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~ 51 (587)
T PRK07431 3 LIVQKFGGTSVG-------SVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV 51 (587)
T ss_pred eEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH
Confidence 579999999983 788999999999999999999999999 699998864
No 33
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=97.35 E-value=0.00033 Score=57.55 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=37.3
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC-Chhhhh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG-GNI~RG 144 (170)
.+|+|++|..|. |++.+++++++|+++ +.|++++||++| +.+-+.
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~ 46 (227)
T cd04234 1 MVVQKFGGTSVA-------SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDL 46 (227)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHH
Confidence 379999999985 456899999999999 889999999955 555544
No 34
>PRK04531 acetylglutamate kinase; Provisional
Probab=97.33 E-value=0.00032 Score=63.51 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.7
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
|+.+||||+|+++..+ +..+++.|+.+.+.|.++.||-|||......-. +.|++...-
T Consensus 36 ~~~~VIKiGG~~l~~~---------~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~--~~gie~~~v 93 (398)
T PRK04531 36 ERFAVIKVGGAVLRDD---------LEALASSLSFLQEVGLTPIVVHGAGPQLDAELD--AAGIEKETV 93 (398)
T ss_pred CcEEEEEEChHHhhcC---------HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHH--HcCCCcEEE
Confidence 7889999999999621 589999999999999999999999999986432 367665443
No 35
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=97.22 E-value=0.00066 Score=58.05 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=42.3
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
-+++|+||+|.++..+ .++.++++|+.+.+.|+++.||-|||...-.+.
T Consensus 18 ~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~ 66 (280)
T cd04237 18 GKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRL 66 (280)
T ss_pred CCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHH
Confidence 4589999999999632 368999999999999999999999999887754
No 36
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0012 Score=60.35 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=49.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
.++|||+||+=..|..+ ...+|...+..++++|.++++.|+||.|| =-|-++-|..
T Consensus 5 ~~~riVvKiGSs~Lt~~-~g~l~~~~l~~l~~~ia~L~~~G~eVilV-SSGAiaaG~~ 60 (369)
T COG0263 5 SARRIVVKIGSSSLTDG-TGGLDRSKLEELVRQVAALHKAGHEVVLV-SSGAIAAGRT 60 (369)
T ss_pred cceEEEEEECcceeeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEE-ccchhhhChh
Confidence 48999999999999865 56799999999999999999999998766 5667888865
No 37
>PLN02512 acetylglutamate kinase
Probab=97.11 E-value=0.0012 Score=57.31 Aligned_cols=57 Identities=23% Similarity=0.481 Sum_probs=43.1
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
-+.+|+||+|+++. |++....++++|+.+.+.|.++.||.|||...--. .++.|+++
T Consensus 47 ~~tiVIKlGGs~i~-------d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~--~~~~gi~~ 103 (309)
T PLN02512 47 GKTVVVKYGGAAMK-------DPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSW--LKKVGIEP 103 (309)
T ss_pred CCeEEEEECCeecc-------ChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHH--HHHcCCCC
Confidence 35699999999984 34456778899998899999999999999965442 22355543
No 38
>PRK05279 N-acetylglutamate synthase; Validated
Probab=97.09 E-value=0.001 Score=59.41 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.8
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
-+++||||+|+++..+ .++.++++|+.+.+.|+++.||-|||......-. +.|++.
T Consensus 25 ~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~--~~g~~~ 80 (441)
T PRK05279 25 GKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLA--ARGIEP 80 (441)
T ss_pred CCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH--HcCCCc
Confidence 3589999999999522 2578999999999999999999999998876543 255553
No 39
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=97.08 E-value=0.0018 Score=53.87 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=34.0
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+|+|++|.++. |.+.+++++++|+++.+.|+++.||+
T Consensus 2 ~ViK~GGs~l~-------~~~~~~~~~~~I~~~~~~g~~~vvV~ 38 (244)
T cd04260 2 IVQKFGGTSVS-------TKERREQVAKKVKQAVDEGYKPVVVV 38 (244)
T ss_pred EEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 68999999984 67789999999999999999999999
No 40
>PRK00942 acetylglutamate kinase; Provisional
Probab=97.05 E-value=0.00076 Score=56.96 Aligned_cols=48 Identities=25% Similarity=0.509 Sum_probs=39.8
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.+++|+|++|+++.. .+.+..++++|+.+.+.|.++.||-|||...--
T Consensus 23 ~~~iViK~GGs~l~~-------~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~ 70 (283)
T PRK00942 23 GKTIVIKYGGNAMTD-------EELKEAFARDIVLLKQVGINPVVVHGGGPQIDE 70 (283)
T ss_pred CCeEEEEEChHHhcC-------cchHHHHHHHHHHHHHCCCCEEEEeCChHHHHH
Confidence 357999999999963 235788999999999999999999999986543
No 41
>PRK08210 aspartate kinase I; Reviewed
Probab=97.04 E-value=0.0008 Score=59.37 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=34.9
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+++|+|++|.++. |.+.+.+++++|+++.+.|+++.||+
T Consensus 2 ~~iViK~GGs~l~-------~~~~~~~~~~~i~~~~~~g~~~vvV~ 40 (403)
T PRK08210 2 KIIVQKFGGTSVS-------TEERRKMAVNKIKKALKEGYKVVVVV 40 (403)
T ss_pred CeEEEeECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4789999999985 45678999999999999999999999
No 42
>PRK12352 putative carbamate kinase; Reviewed
Probab=96.99 E-value=0.0014 Score=58.07 Aligned_cols=53 Identities=17% Similarity=0.344 Sum_probs=42.8
Q ss_pred eEEEEEeecceecCCCCC-CC--CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 91 QRVLLKVSGEALAGDHTQ-NI--DPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~-gi--D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
|++|+|++|+++..++.. .+ +.+.++.+|++|..++..|++++||=|||.-.=
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~ 58 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVG 58 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHH
Confidence 589999999999653211 12 236889999999999999999999999997653
No 43
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=96.91 E-value=0.0017 Score=58.05 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=46.1
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
-+.+|||++|+++..+ .+..++++|+.+...|+++.||-|||...-.... ++|++..+-|
T Consensus 17 ~~~~ViK~GG~~~~~~--------~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~--~~g~~~~~~~ 76 (429)
T TIGR01890 17 GKTFVVGLGGELVEGG--------NLGNIVADIALLHSLGVRLVLVHGARPQIERILA--ARGRTPHYHR 76 (429)
T ss_pred CCEEEEEEChhhccCc--------cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH--HcCCCceeeC
Confidence 3579999999998532 1468999999999999999999999987766543 3677654433
No 44
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=96.88 E-value=0.0024 Score=61.57 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=42.4
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.+|||+|++|..|..+ +..+|.+.+++++++|+++.+.|++|.||+=|
T Consensus 15 ~~~iViK~G~ssl~~~-~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSg 62 (718)
T PLN02418 15 VKRVVIKVGTAVVTRD-DGRLALGRLGALCEQIKELNSDGYEVILVSSG 62 (718)
T ss_pred CCEEEEEeCCCeecCC-CCCccHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 6799999999999854 34699999999999999999999998888755
No 45
>PRK08841 aspartate kinase; Validated
Probab=96.82 E-value=0.0022 Score=57.65 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=37.8
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+|+|.+|.++. |++.++++|++|+++.+.|+++.||++|+-
T Consensus 3 ~~V~KfGGtsv~-------~~~~i~~va~~I~~~~~~g~~vvvVvSa~~ 44 (392)
T PRK08841 3 LIVQKFGGTSVG-------SIERIQTVAEHIIKAKNDGNQVVVVVSAMA 44 (392)
T ss_pred eEEEeECcccCC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCc
Confidence 589999999995 678999999999999999999999998653
No 46
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=96.71 E-value=0.002 Score=52.61 Aligned_cols=41 Identities=32% Similarity=0.532 Sum_probs=35.7
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
.+|+|++|+++..+ +++++++|+.+++.|.++.||-|||..
T Consensus 1 ~~ViK~GGs~l~~~---------~~~~~~~i~~l~~~g~~~VlVhggg~~ 41 (231)
T TIGR00761 1 TIVIKIGGAAISDL---------LEAFASDIAFLRAVGIKPVIVHGGGPE 41 (231)
T ss_pred CEEEEEChHHHhcc---------HHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 37999999999521 899999999999999999999999865
No 47
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=96.68 E-value=0.0025 Score=53.89 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=38.8
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
+.+|+||+|+++. |.+....++++|+.+++.|.++.||.|||....-
T Consensus 15 ~~~ViKlGGs~i~-------~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~ 61 (279)
T cd04250 15 KTVVIKYGGNAMK-------DEELKESFARDIVLLKYVGINPVVVHGGGPEINE 61 (279)
T ss_pred CEEEEEEChHHhc-------CccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHH
Confidence 4689999999985 3346778899999898999999999999986543
No 48
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=96.67 E-value=0.0019 Score=53.67 Aligned_cols=43 Identities=33% Similarity=0.584 Sum_probs=37.2
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
+|+||+|+++. |++.++.++++|+.+.+.|.++.||-|||.+.
T Consensus 1 ~ViKlGGs~l~-------~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~ 43 (256)
T cd04238 1 VVIKYGGSAMK-------DEELKEAFADDIVLLKQVGINPVIVHGGGPEI 43 (256)
T ss_pred CEEEEChHHhc-------CccHHHHHHHHHHHHHHCCCCEEEECCCcHHH
Confidence 48999999985 34468899999999999999999999999874
No 49
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=96.63 E-value=0.0029 Score=54.16 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=39.8
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
+.+|+|++|+++. |++....++++|+.++..|.++.||-|||...-.
T Consensus 24 ~~~VIk~gG~~~~-------~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~ 70 (284)
T CHL00202 24 RIMVIKYGGAAMK-------NLILKADIIKDILFLSCIGLKIVVVHGGGPEINF 70 (284)
T ss_pred CeEEEEEChHHhc-------CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHH
Confidence 5799999999974 3345678999999999999999999999997643
No 50
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0056 Score=54.28 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=48.3
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
|-+|||+||+-.++..++..+.-..++..|++++.++.+.|+||.+|--||--|
T Consensus 8 ka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~ 61 (285)
T KOG1154|consen 8 KAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAF 61 (285)
T ss_pred cceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhh
Confidence 468999999999999888888899999999999999999999999987776544
No 51
>PRK12354 carbamate kinase; Reviewed
Probab=96.57 E-value=0.0048 Score=54.83 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=40.8
Q ss_pred eEEEEEeecceecCCCC-CCCC--HHHHHHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 91 QRVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~-~giD--~~~l~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
+||||||+|.+|...+. .... .+.+++.|++|+++.+ ||+|+|+=|+|..
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpq 53 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQ 53 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccH
Confidence 58999999999975322 2344 3388999999999999 9999999999875
No 52
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=96.42 E-value=0.0049 Score=51.61 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=41.6
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
||||+|+++.. .+.+++++|+.+++.|.++.||-|||...=.. ++++|++..+
T Consensus 2 ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~--~~~~gi~~~~ 54 (248)
T cd04252 2 VIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEE--LEAAGVEPEY 54 (248)
T ss_pred EEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHH--HHHcCCCcEe
Confidence 89999998852 17899999999999999999999999876443 2346766543
No 53
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=96.31 E-value=0.0088 Score=51.92 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=41.1
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
.+-+|+|++|+++. |++.+..+++.|+-+.+.|.++.||-|||...-
T Consensus 35 ~~f~VIK~GG~~~~-------~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~ 81 (271)
T cd04236 35 PAFAVLEVDHSVFR-------SLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDG 81 (271)
T ss_pred CCEEEEEEChhhhc-------CchhHHHHHHHHHHHHHCCCeEEEEeCCChHHh
Confidence 45689999999983 566799999999999999999999999998543
No 54
>PRK12686 carbamate kinase; Reviewed
Probab=96.21 E-value=0.0078 Score=53.49 Aligned_cols=52 Identities=13% Similarity=0.343 Sum_probs=42.5
Q ss_pred eEEEEEeecceecCCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 91 QRVLLKVSGEALAGDHTQ-NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~-giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
||||+||+|-+|..++.. ....+.++..|+.|..+.+.||+++||=|+|.-.
T Consensus 3 ~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQV 55 (312)
T PRK12686 3 EKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQV 55 (312)
T ss_pred CEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHH
Confidence 689999999999754321 2345678999999999999999999999998643
No 55
>PLN02825 amino-acid N-acetyltransferase
Probab=96.17 E-value=0.009 Score=56.21 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=46.7
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
+=+.+|||++|+++.. + .+..++..|..++..|+++.||-|||...-..-. +.|++..+-
T Consensus 16 rgktfVIk~gG~~l~~-------~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~--~~gi~~~f~ 75 (515)
T PLN02825 16 RGSTFVVVISGEVVAG-------P-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLA--ERGREPKYV 75 (515)
T ss_pred CCCEEEEEECchhhcC-------c-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHH--HcCCCceee
Confidence 3467999999999852 2 4788999999999999999999999998766432 356654433
No 56
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=95.92 E-value=0.0094 Score=50.36 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=38.7
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
+|+||+|+++..+ ++++++|+.+.+.|.++.||.|||...--. +++.|++.
T Consensus 2 ~ViK~GG~~l~~~----------~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~--~~~~gi~~ 52 (268)
T PRK14058 2 IVVKIGGSVGIDP----------EDALIDVASLWADGERVVLVHGGSDEVNEL--LERLGIEP 52 (268)
T ss_pred EEEEEChHHhhCc----------HHHHHHHHHHHHCCCCEEEEeCCHHHHHHH--HHHcCCCc
Confidence 7999999998521 256899999999999999999998866542 23456543
No 57
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.021 Score=50.08 Aligned_cols=61 Identities=23% Similarity=0.430 Sum_probs=47.4
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
.+-+|+|++|+++. |++.+..+++.|.-++..|.+..||=|||...-..- +++|++..+.|
T Consensus 2 ~k~~VIK~GG~~~~-------~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l--~~~gie~~f~~ 62 (265)
T COG0548 2 GKTIVIKLGGSAME-------DENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEML--AKLGIEPEFVK 62 (265)
T ss_pred CceEEEEECceeec-------CchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHH--HHcCCCCeeeC
Confidence 46789999999984 556799999999999999999988889988765432 23666554433
No 58
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=95.69 E-value=0.014 Score=48.54 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=35.2
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNI 141 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI 141 (170)
+|+|++|+++. |.+.+++++++|+.+.+ .|.++.||-|||.+
T Consensus 1 ~ViK~GGs~l~-------~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~ 43 (252)
T cd04249 1 LVIKLGGALLE-------TEAALEQLFSALSEYQQQHNRQLVIVHGGGCV 43 (252)
T ss_pred CEEEEChHHhc-------ChhhHHHHHHHHHHHHHhCCCCEEEECCCCHH
Confidence 38999999984 34578999999998854 57899999999997
No 59
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=94.50 E-value=0.031 Score=47.07 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=36.7
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
+|+||+|+++. + +++++++|+.+ |.++.+|-|||...-.. +++.|+++.+
T Consensus 1 ~VIKlGGs~l~-~---------~~~~~~~i~~l---g~~~VlVHGgg~~i~~~--~~~~gi~~~~ 50 (257)
T cd04251 1 IVVKIGGSVVS-D---------LDKVIDDIANF---GERLIVVHGGGNYVNEY--LKRLGVEPKF 50 (257)
T ss_pred CEEEEChHHhh-C---------hHHHHHHHHHc---CCCEEEECCCHHHHHHH--HHHcCCCcEE
Confidence 48999999985 2 36788888887 88999999999965442 2345555443
No 60
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=94.11 E-value=0.094 Score=47.06 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=36.7
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
.+|+|.+|..+. |++.++++++.|+...+.|++++|||++.
T Consensus 2 ~~V~KFGGssv~-------~~~~~~~v~~~i~~~~~~~~~~vvVvSA~ 42 (441)
T TIGR00657 2 LIVQKFGGTSVG-------NAERIRRVAKIVLKEKKKGNQVVVVVSAM 42 (441)
T ss_pred CEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 469999999985 67899999999999888899999999986
No 61
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=94.01 E-value=0.098 Score=46.05 Aligned_cols=57 Identities=28% Similarity=0.522 Sum_probs=40.5
Q ss_pred EEEEeecceecCC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCC
Q 030876 93 VLLKVSGEALAGD-HTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 153 (170)
Q Consensus 93 VLLKLSGEaLagd-~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGi 153 (170)
++|||+|+++... +..-++.++++++|.||.. -+. -.+.||=|||.+ |...|++.++
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~-~~~-~~livVHGgGSF--GHp~Ak~~~~ 60 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN-GKP-EKLIVVHGGGSF--GHPAAKEFGL 60 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc-CCc-ccEEEEecCccc--cCHHHHHhCc
Confidence 7999999999733 2345888999999999996 222 256688888876 3333445555
No 62
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=93.70 E-value=0.058 Score=48.04 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=39.6
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC-------------C-------hhhhhhh-hhhcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-------------G-------NIFRGAS-AAGNS 151 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG-------------G-------NI~RG~~-~Ar~l 151 (170)
+|+|++|..+.. . ++++++.|++..+ +.+++|||++ + ++.|.+. +++++
T Consensus 2 ~V~KFGGsSv~~-------~--~~~v~~ii~~~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~L 71 (327)
T TIGR02078 2 IVVKFGGSSVRY-------A--FEEALELVKSLSE-EKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKEL 71 (327)
T ss_pred EEEEECCcchHH-------H--HHHHHHHHHHHhc-CCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999962 1 8889998887655 6799999999 4 5666664 66777
Q ss_pred CC
Q 030876 152 GL 153 (170)
Q Consensus 152 Gi 153 (170)
+.
T Consensus 72 ~~ 73 (327)
T TIGR02078 72 GV 73 (327)
T ss_pred cc
Confidence 76
No 63
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=93.38 E-value=0.13 Score=44.72 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=33.5
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
|+|+|.+|..+. |++.++++++.|++. ..+.+++|||=.
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~iI~~~-~~~~~~vvVvSA 39 (298)
T cd04244 1 RLVMKFGGTSVG-------SAERIRHVADLVGTY-AEGHEVVVVVSA 39 (298)
T ss_pred CEEEEECcccCC-------CHHHHHHHHHHHHHh-hcCCCEEEEEeC
Confidence 689999999995 688999999999987 457899999964
No 64
>PRK06291 aspartate kinase; Provisional
Probab=92.76 E-value=0.19 Score=45.88 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=35.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
|++|.|.+|..+. |++.++++++.|++-.+.|++++|||=.
T Consensus 1 ~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA 41 (465)
T PRK06291 1 MRLVMKFGGTSVG-------DGERIRHVAKLVKRYRSEGNEVVVVVSA 41 (465)
T ss_pred CcEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 4689999999985 6788999999999876678999999974
No 65
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=92.29 E-value=0.25 Score=45.76 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=38.0
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
++|.|.+|..++ |.+.+++.|+.|++..+.|+||+||+=.+.
T Consensus 3 ~iV~KFGGTSva-------~~e~i~~va~iv~~~~~~g~~vVVVvSA~~ 44 (447)
T COG0527 3 LIVQKFGGTSVA-------DAERILRVADIVKEDSEEGVKVVVVVSAMG 44 (447)
T ss_pred eEEEEeCCcccC-------CHHHHHHHHHHHHhhhhcCCcEEEEECCCC
Confidence 689999999996 678999999999999999999999997763
No 66
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=89.55 E-value=0.51 Score=42.77 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=41.0
Q ss_pred eEEEEEeecceecCCCCC---CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 91 QRVLLKVSGEALAGDHTQ---NIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~---giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
+|||+-|+|-+|-.+... ..-.+.++.-|++|.++.+.|||++|.=|-|.-
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQ 54 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQ 54 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCch
Confidence 589999999999855321 123567889999999999999999999998753
No 67
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=88.07 E-value=1 Score=39.43 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=32.6
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|+|.+|..+. |++.++++++.|++-.+.|.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vVVVSA 40 (295)
T cd04259 2 VVLKFGGTSVS-------SRARWDTIAKLAQKHLNTGGQPLIVCSA 40 (295)
T ss_pred EEEEeCccccC-------CHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 58999999985 6778999999998766667788889864
No 68
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=85.81 E-value=2.1 Score=33.80 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=43.5
Q ss_pred cceEEEEEeecceecCCCC--CCCCHHHH----HHHHHHHHHHHhCCcEEEEEEcCChhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHT--QNIDPKIT----MAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~--~giD~~~l----~~iA~eIkel~~~GvqIAIVVGGGNI~RG~ 145 (170)
+.|.+++-+-|=.+..++. +..+++.+ ..+.+.|+++.+.|++++||..+.+.+|++
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~ 74 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGK 74 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCc
Confidence 4678899999987764432 22366555 457889999999999999999988887774
No 69
>PRK09411 carbamate kinase; Reviewed
Probab=85.40 E-value=1.5 Score=39.28 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=47.6
Q ss_pred eEEEEEeecceecCCCCC-CCCHH--HHHHHHHHHHHHHhCCcEEEEEEcCC----hhhhhhhhhhcCCCCchhhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQ-NIDPK--ITMAIAREVASVTRLGIEVAIVVGGG----NIFRGASAAGNSGLDRSSADYI 161 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~-giD~~--~l~~iA~eIkel~~~GvqIAIVVGGG----NI~RG~~~Ar~lGidrataDyI 161 (170)
+|||+-|+|-+|-..... ..+.+ .++.-|+.|.++.+. |||+|+=|-| +++.....+++. ...-.|..
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~~--~~~pld~~ 76 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKEV--EPYPLDVL 76 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcCC--CCCCchhh
Confidence 589999999999753322 23444 788999999999998 9999999986 566654433322 44444543
No 70
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=84.96 E-value=1.7 Score=37.51 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=37.0
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCCchhhhhhhhee
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGYFL 165 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGidrataDyIGMLA 165 (170)
|+|+.|.-.+ .+.+.+.+.+-+.+-++.||-|||-++-=. ..-+++|+....++.|-|++
T Consensus 3 vVk~~Gs~~~------------~~~~~~~~ale~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~ 63 (212)
T COG2054 3 VVKKGGSGVA------------ERAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITA 63 (212)
T ss_pred eEEecCCChH------------HHHHHHHHHHHhhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 5677776442 233333444433333599999999776442 12246899999998887654
No 71
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=84.32 E-value=1.5 Score=43.29 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=34.6
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
..+|+|.+|..+. |++.++++|+.|++-.+.|.+++|||=.
T Consensus 8 ~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA 48 (861)
T PRK08961 8 RWVVLKFGGTSVS-------RRHRWDTIAKIVRKRLAEGGRVLVVVSA 48 (861)
T ss_pred CcEEEEECccccC-------CHHHHHHHHHHHHhhcccCCCEEEEEeC
Confidence 3569999999985 6788999999998766778899999964
No 72
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=83.39 E-value=2 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.5
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.|+|.+|..+. |++.++++++.|++-. .+.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~iI~~~~-~~~~~vvVvSA 39 (294)
T cd04257 2 KVLKFGGTSLA-------NAERIRRVADIILNAA-KQEQVAVVVSA 39 (294)
T ss_pred EEEEeCccccC-------CHHHHHHHHHHHHhhc-cCCCEEEEEcC
Confidence 48999999995 6788999999999765 45789999863
No 73
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=81.49 E-value=3.4 Score=34.19 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHH-----------HHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 110 IDPKITMAIARE-----------VASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 110 iD~~~l~~iA~e-----------Ikel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
.+.+.+++++++ ++.+.+.|++|+||-||--++=...+ +.+|++...+
T Consensus 63 ~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~a 121 (212)
T COG0560 63 LPVEVLEEVREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVA 121 (212)
T ss_pred CCHHHHHHHHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchhee
Confidence 455666666666 55666799999999999998877664 5689887664
No 74
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=80.48 E-value=2.9 Score=36.47 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=30.7
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|+|.+|..+. |.+.++++++.|++-. +.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~iI~~~~--~~~~vvVvSA 38 (293)
T cd04243 2 KVLKFGGTSVA-------SAERIRRVADIIKSRA--SSPVLVVVSA 38 (293)
T ss_pred EEEEECccccC-------CHHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 58999999985 6788999999998754 6789999863
No 75
>PRK09084 aspartate kinase III; Validated
Probab=80.40 E-value=2.6 Score=38.57 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=30.5
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|.|.+|..+. |++.++++|+.|++ .+.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~e~i~~v~~ii~~---~~~~~vvVVSA 37 (448)
T PRK09084 2 VVAKFGGTSVA-------DFDAMNRSADIVLS---NPNTRLVVLSA 37 (448)
T ss_pred EEEEECccCcC-------CHHHHHHHHHHHhc---CCCCEEEEEcC
Confidence 58899999985 78899999999986 46889999865
No 76
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=76.53 E-value=10 Score=31.51 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=39.5
Q ss_pred ceEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSGEAL-----AGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaL-----agd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
|..|.+.+.|.++ .+++..-++.+.+.++.+.+.++.+..+++.|+.|.|..|.-
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~a 62 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCA 62 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCccc
Confidence 4445555555443 122234589999999999999987667899999999977754
No 77
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=75.46 E-value=4.2 Score=35.69 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=29.7
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|+|.+|..+. |++.++++++.|++- +.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~ii~~~---~~~~vVVVSA 37 (292)
T cd04258 2 VVAKFGGTSVA-------DYAAMLRCAAIVKSD---ASVRLVVVSA 37 (292)
T ss_pred EEEEECccccC-------CHHHHHHHHHHHhcc---CCCEEEEEeC
Confidence 58999999995 678899999999853 5688888864
No 78
>PRK08373 aspartate kinase; Validated
Probab=74.74 E-value=3.5 Score=37.05 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=30.2
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
++.+|+|.+|..+.. .++++++.|++. ..|.+++|||=.
T Consensus 3 ~~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA 41 (341)
T PRK08373 3 EKMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSA 41 (341)
T ss_pred CCCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecC
Confidence 456799999999952 377888888865 447899999965
No 79
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=6.5 Score=32.50 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=34.8
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-|+|-+-|+.+.. .++|+.|..+.+.|-.|++||||=+=...
T Consensus 69 ~vi~Ld~~Gk~~sS-----------e~fA~~l~~~~~~G~~i~f~IGG~~Gl~~ 111 (155)
T COG1576 69 YVVLLDIRGKALSS-----------EEFADFLERLRDDGRDISFLIGGADGLSE 111 (155)
T ss_pred eEEEEecCCCcCCh-----------HHHHHHHHHHHhcCCeEEEEEeCcccCCH
Confidence 45788888888753 57899999999999999999999664443
No 80
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.90 E-value=4.4 Score=32.97 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCCchhh
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSA 158 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGidrata 158 (170)
.....+.++.+.+.|.+-.+|++||||-.+. ..-++.|.+|.+.
T Consensus 77 ~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 77 LTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred HHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeC
Confidence 4445555566666788877899999999994 4224688888764
No 81
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=70.83 E-value=15 Score=30.74 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFR 143 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~R 143 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.| +.|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~ 61 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFC 61 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcee
Confidence 4589999999999999985 5668999999977 6664
No 82
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=70.02 E-value=8.3 Score=33.77 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=29.0
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.|+|.+|..+. |++.++++++.|++ .+.+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVvSA 37 (288)
T cd04245 2 KVVKFGGSSLA-------SAEQFQKVKAIVKA---DPERKIVVVSA 37 (288)
T ss_pred EEEEECcCccC-------CHHHHHHHHHHHHh---cCCCEEEEEcC
Confidence 38999999995 67789999999984 24688888863
No 83
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=68.85 E-value=7.9 Score=31.17 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=30.2
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEcCC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGGG 139 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv-qIAIVVGGG 139 (170)
.-..|+|...|+.+.. .++|+.|.+....|. +|+.||||=
T Consensus 67 ~~~~i~Ld~~Gk~~sS-----------~~fA~~l~~~~~~g~~~i~F~IGG~ 107 (155)
T PF02590_consen 67 NDYVILLDERGKQLSS-----------EEFAKKLERWMNQGKSDIVFIIGGA 107 (155)
T ss_dssp TSEEEEE-TTSEE--H-----------HHHHHHHHHHHHTTS-EEEEEE-BT
T ss_pred CCEEEEEcCCCccCCh-----------HHHHHHHHHHHhcCCceEEEEEecC
Confidence 3457899999998742 678999999999998 999999985
No 84
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=68.00 E-value=8.5 Score=29.92 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 112 PKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~Gv-qIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
.+.+.+++++++ +.|. ++-|++||...-.-...-++.|+++.+
T Consensus 67 ~~~~~~~~~~L~---~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 67 LTLVPALRKELD---KLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHHHH---hcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 334555555554 4455 566666665543334323468887654
No 85
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=67.78 E-value=23 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~a 63 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAA 63 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceEC
Confidence 3589999999999999986 456899999998876654
No 86
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=67.34 E-value=23 Score=29.50 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=39.5
Q ss_pred ceEEEEEeeccee----c-CCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSGEAL----A-GDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaL----a-gd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
|+.+++.+.+.+. . +++...++.+.+.++.+.+.++.+ ..+++.|+.|-|+.|.-
T Consensus 4 ~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~a 64 (249)
T PRK07110 4 KVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFAT 64 (249)
T ss_pred CceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeC
Confidence 5556666655432 1 233346899999999999999864 45799999998887754
No 87
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=66.91 E-value=24 Score=29.30 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=37.3
Q ss_pred ceEEEEEeecceec-----CCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 90 WQRVLLKVSGEALA-----GDHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaLa-----gd~~~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
|+.|.+...|.+.- ++...-++.+.+.++.+.+.++. +..+++.|+.|.| ..|..
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~a 64 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVA 64 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceee
Confidence 44555555454331 22223589999999999999886 3558889999977 66654
No 88
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=66.91 E-value=9.1 Score=30.92 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=29.2
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEcC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG 138 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv-qIAIVVGG 138 (170)
-|+|-..|+.+. . .++|+.|.+..+.|. +|+.||||
T Consensus 70 ~i~LDe~Gk~~s--------S---~~fA~~l~~~~~~g~~~i~F~IGG 106 (157)
T PRK00103 70 VIALDERGKQLS--------S---EEFAQELERWRDDGRSDVAFVIGG 106 (157)
T ss_pred EEEEcCCCCcCC--------H---HHHHHHHHHHHhcCCccEEEEEcC
Confidence 577888888763 2 678888988888886 99999999
No 89
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=66.89 E-value=25 Score=29.25 Aligned_cols=37 Identities=8% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~a 63 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCA 63 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccc
Confidence 4589999999999999986 456899999999977764
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=66.40 E-value=11 Score=28.20 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=24.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
|||+|=++|..-. .+..+.|+++.+.|+||-+|+
T Consensus 1 k~i~l~vtGs~~~------------~~~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAA------------YKAPDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGG------------GGHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHH------------HHHHHHHHHHhhCCCEEEEEE
Confidence 6999999998532 225677777778899999887
No 91
>PLN02551 aspartokinase
Probab=66.36 E-value=9.8 Score=36.05 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.8
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
+.+.+|+|.+|..++ |++.++++|+.|++-.+ .+++|||=
T Consensus 50 ~~~~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~~--~~~vVVvS 89 (521)
T PLN02551 50 KQLTVVMKFGGSSVA-------SAERMREVADLILSFPD--ERPVVVLS 89 (521)
T ss_pred cCceEEEEECCCccC-------CHHHHHHHHHHHHhcCC--CCEEEEEc
Confidence 356789999999995 67899999999987433 45778886
No 92
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=66.01 E-value=20 Score=30.26 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=38.2
Q ss_pred ceEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 90 WQRVLLKVSGEAL-----AGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaL-----agd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
|+.|.+...|.+. .+++..-++++.+.++.+.+.++.+ ..+++.|+.|.| +.|.-
T Consensus 12 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~a 73 (273)
T PRK07396 12 YEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCS 73 (273)
T ss_pred CcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEe
Confidence 4455555555443 1333346899999999999999864 458889898977 46654
No 93
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=65.53 E-value=37 Score=28.70 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.|..|.-
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~Fsa 76 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCS 76 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCccc
Confidence 4589999999999999986 566899999999976654
No 94
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=64.81 E-value=29 Score=28.97 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-C-cEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRL-G-IEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~-G-vqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+. . +++.|+.|.|..|.-
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~a 64 (266)
T PRK05981 26 NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCT 64 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCccc
Confidence 458999999999999998753 3 899999999977753
No 95
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=64.81 E-value=26 Score=29.44 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.++++.+ ..+++.|+.|.|..|.-
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~Fca 65 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSY 65 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceec
Confidence 45899999999999999864 56899999998876654
No 96
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=64.55 E-value=24 Score=29.55 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=39.3
Q ss_pred ceEEEEEeec-cee----c-CCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSG-EAL----A-GDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSG-EaL----a-gd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
|..|++.+-| .++ . +++...+|.+.+.++.+.++++.+ ..+++.|+.|.|..|..
T Consensus 4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~Fca 65 (272)
T PRK06210 4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCA 65 (272)
T ss_pred cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCccc
Confidence 5556666655 332 1 222345899999999999999864 56888999998887764
No 97
>PRK09034 aspartate kinase; Reviewed
Probab=64.17 E-value=11 Score=34.52 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=28.5
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
+|.|.+|..+. |.+.++++++.|++ .+.+++|||=
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVVS 36 (454)
T PRK09034 2 KVVKFGGSSLA-------SAEQFKKVLNIVKS---DPERKIVVVS 36 (454)
T ss_pred EEEEeCccccC-------CHHHHHHHHHHHhc---cCCCEEEEEc
Confidence 48999999985 67789999999884 3567888886
No 98
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=63.87 E-value=11 Score=30.31 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=27.9
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.|+|-..|+.+. . .++|+.|.+..+.|-+|+.||||
T Consensus 68 ~i~LDe~Gk~~s--------S---~~fA~~l~~~~~~g~~i~FvIGG 103 (153)
T TIGR00246 68 VVTLDIPGKPWT--------T---PQLADTLEKWKTDGRDVTLLIGG 103 (153)
T ss_pred EEEEcCCCCcCC--------H---HHHHHHHHHHhccCCeEEEEEcC
Confidence 566777777653 2 57888888887788789999999
No 99
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=62.86 E-value=16 Score=30.28 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=46.0
Q ss_pred ceEEEEEeecceecCCCCCC------CCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQN------IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~g------iD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
++.+++.+.|.......... .|.+....+.+.|+++.+.|++++||.|.-..++...+. .+|+.
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~-~l~~~ 227 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVE-WLRQT 227 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHH-HHHHc
Confidence 56788999999875332111 244456788889999999999999999998888775442 35544
No 100
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=62.63 E-value=28 Score=29.10 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.+.++.+..+++.|+.|.|..|.-
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~a 64 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSA 64 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCccc
Confidence 4589999999999999996677898888898977765
No 101
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=62.25 E-value=12 Score=28.38 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
....++.|+++.+.|++++|+. |.|...-...++.+|+++
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~T-GD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILT-GDNESTASAIAKQLGIFD 168 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEE-SSEHHHHHHHHHHTTSCS
T ss_pred hhhhhhhhhhhhccCcceeeee-cccccccccccccccccc
Confidence 3457788888999999999987 555555555556788865
No 102
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=62.03 E-value=16 Score=30.42 Aligned_cols=37 Identities=11% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.+.++.+..+++.|+.|.|..|.-
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~a 58 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCA 58 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceec
Confidence 3589999999999999988778899999999987754
No 103
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=61.93 E-value=8 Score=28.16 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 111 DPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~Gv-qIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
..+.+.++++++++. +. .+.|++||--.-.....+++.|+|....|
T Consensus 63 ~~~~~~~~i~~l~~~---~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 63 HMTLMKEVIEELKEA---GLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred cHHHHHHHHHHHHHc---CCCCCeEEEECCCCChhHHHHHHcCCeEEECC
Confidence 345678888888875 33 67788888655443444567888876543
No 104
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=61.71 E-value=29 Score=29.95 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 27 NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~Fca 64 (298)
T PRK12478 27 NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSG 64 (298)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccc
Confidence 45899999999999999864 56899999999987765
No 105
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=61.27 E-value=15 Score=30.54 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=41.0
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC-hhhhhhh-hhhcCCCCc
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGAS-AAGNSGLDR 155 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG-NI~RG~~-~Ar~lGidr 155 (170)
|+-+++-+-|=.+.+++ . +..-.+.|+++.++|++++++.|.. .....+. ..+++|++.
T Consensus 1 ~~~~~~D~DGtl~~~~~--~-----i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~ 61 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKE--R-----IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA 61 (249)
T ss_pred CCEEEEeCCCceEcCCe--e-----CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 56788888888887653 1 2334688888999999999999844 4444442 334688764
No 106
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=60.67 E-value=14 Score=36.87 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=29.7
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
++|.|.+|..++ |++.++++++.|++-.+.+ ++|||=
T Consensus 12 ~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~~~~--~vVVVS 48 (810)
T PRK09466 12 RQLHKFGGSSLA-------DAKCYRRVAGILAEYSQPD--DLVVVS 48 (810)
T ss_pred eEEEEECccccC-------CHHHHHHHHHHHhhhccCC--EEEEEc
Confidence 579999999995 6889999999998765554 566665
No 107
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=60.48 E-value=31 Score=29.26 Aligned_cols=56 Identities=13% Similarity=0.344 Sum_probs=41.5
Q ss_pred cceEEEEEeecceec-----CCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 89 KWQRVLLKVSGEALA-----GDHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 89 kykRVLLKLSGEaLa-----gd~~~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
+|..|.+.+.|.+.- +++..-++.+.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~a 67 (275)
T PRK09120 6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67 (275)
T ss_pred ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceec
Confidence 466777777775442 23334589999999999999886 456899999998876654
No 108
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=60.45 E-value=34 Score=28.55 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ .+++.|+.|.|..|..
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~Fsa 61 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCF 61 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCccc
Confidence 45899999999999999875 5898999998877755
No 109
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=60.34 E-value=33 Score=28.79 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=37.4
Q ss_pred eEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 91 QRVLLKVSGEAL-----AGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaL-----agd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
..|.+...|.+. .++...-+|.+.++++.+.+.++.+ ..+++.|+.|.| +.|..
T Consensus 8 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~a 68 (262)
T PRK06144 8 DELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVA 68 (262)
T ss_pred CceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceec
Confidence 344555555443 1333346899999999999999874 458999999977 56654
No 110
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=60.08 E-value=40 Score=28.94 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=39.9
Q ss_pred ceEEEEEeeccee----c-CCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSGEAL----A-GDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaL----a-gd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
|..|.+...|.+. . +++..-++++.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 9 ~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~Fca 69 (302)
T PRK08272 9 LKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCA 69 (302)
T ss_pred CCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCccc
Confidence 5556666655432 1 223345899999999999999863 56899999999988865
No 111
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=59.50 E-value=14 Score=36.73 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=31.4
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|+|.+|..+. +++.++++++.|++..+. .+++|||=.
T Consensus 2 ~V~KFGGtSv~-------~~~~i~~v~~iI~~~~~~-~~~vVVVSA 39 (819)
T PRK09436 2 RVLKFGGTSVA-------NAERFLRVADIIESNARQ-EQVAVVLSA 39 (819)
T ss_pred EEEEeCccccC-------CHHHHHHHHHHHHhhccc-CCEEEEEcC
Confidence 48999999985 678999999999987655 688888854
No 112
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=58.78 E-value=19 Score=30.35 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~Fca 67 (275)
T PLN02664 30 NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCS 67 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceee
Confidence 45899999999999999874 56899999999987765
No 113
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=58.43 E-value=19 Score=29.93 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
..++.+.++++.+.+.++.+ ..+++.|+.|.|+.|..
T Consensus 28 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~Fca 65 (251)
T PRK06023 28 NAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSA 65 (251)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeec
Confidence 46899999999999999874 45888999999987775
No 114
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=57.96 E-value=39 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~a 63 (296)
T PRK08260 26 NAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCA 63 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeec
Confidence 4589999999999999985 456899999999987755
No 115
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=57.59 E-value=21 Score=29.68 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCChhhhh
Q 030876 109 NIDPKITMAIAREVASVTRL-GIEVAIVVGGGNIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~-GvqIAIVVGGGNI~RG 144 (170)
-+|.+.+.++.+.+.++.+. .+++.|+.|.|+.|..
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~Fsa 64 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSA 64 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceec
Confidence 58999999999999999875 7999999999986665
No 116
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=57.30 E-value=41 Score=23.94 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=34.7
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIV 135 (170)
.++.|+|-+++=.. +|..-+..+++..+++.+.|.++.++
T Consensus 47 ~~~~vIlD~s~v~~-------iDssgi~~L~~~~~~~~~~g~~~~l~ 86 (117)
T PF01740_consen 47 TIKNVILDMSGVSF-------IDSSGIQALVDIIKELRRRGVQLVLV 86 (117)
T ss_dssp SSSEEEEEETTESE-------ESHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cceEEEEEEEeCCc-------CCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 47889999988643 79999999999999999999998877
No 117
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=57.14 E-value=35 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.++++.+..+++.|+.|.|..|.-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~a 57 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCA 57 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCccc
Confidence 3589999999999999997544899999999977754
No 118
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.99 E-value=18 Score=27.05 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEEEcCChhhhhhhhhhcCCCCch
Q 030876 112 PKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRS 156 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~Gv-qIAIVVGGGNI~RG~~~Ar~lGidra 156 (170)
.+.++++++++++ .|. ++-|++||...-......++.|+++.
T Consensus 64 ~~~~~~~~~~L~~---~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 64 MTLFPEVIELLRE---LGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHHHHHHh---cCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 4445555555555 455 66677776533222332245787754
No 119
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=56.96 E-value=16 Score=28.10 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
...+.|+.+.+.|++++||.++-..+=... ++.+|++...+.
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~-~~~lg~~~~~~~ 132 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASLTILVKPL-ARILGIDNAIGT 132 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HHHcCCcceEec
Confidence 334445666788999999998876544433 345788765443
No 120
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=56.50 E-value=34 Score=27.53 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=38.7
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
+|-|++-|=|=.|..+ ..++++. .+.|+++.+.|++++|..|= ..+.. ...+.++++
T Consensus 3 ~kli~~DlDGTLl~~~--~~i~~~~----~~ai~~~~~~G~~~~iaTGR--~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--KTILPES----LEALARAREAGYKVIIVTGR--HHVAIHPFYQALALD 60 (272)
T ss_pred ccEEEEeCCCceECCC--CccCHHH----HHHHHHHHHCCCEEEEEcCC--ChHHHHHHHHhcCCC
Confidence 5678889999988644 3467654 47788899999999888753 33332 233456654
No 121
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=56.17 E-value=43 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-+|++.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~a 64 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSA 64 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccC
Confidence 45899999999999999875 46899999998877754
No 122
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=56.16 E-value=18 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.3
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|+|.+|..+.. + .+++++.|.+-...+.+++|||=.
T Consensus 3 ~V~KFGGtSv~~-------~--~~~v~~~i~~~~~~~~~~vVVvSA 39 (306)
T cd04247 3 VVQKFGGTSVGK-------F--PDNIADDIVKAYLKGNKVAVVCSA 39 (306)
T ss_pred EEEEeCchhhcc-------H--HHHHHHHHHhhhccCCceEEEEec
Confidence 589999999862 2 267777555544556788888864
No 123
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=56.01 E-value=7.2 Score=34.07 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
.|.|||||+|-=-..-++.|.+....+
T Consensus 87 ~IyVgGGNTF~LL~~lke~gld~iIr~ 113 (224)
T COG3340 87 IIYVGGGNTFNLLQELKETGLDDIIRE 113 (224)
T ss_pred EEEECCchHHHHHHHHHHhCcHHHHHH
Confidence 578899999988764467888776655
No 124
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=55.82 E-value=48 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++.+ ..+++.|+.|.|+.|..
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~Fca 63 (258)
T PRK06190 26 NALSAALRRALFAALAEADADDDVDVVVLTGADPAFCA 63 (258)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccC
Confidence 45899999999999999864 46899999999987765
No 125
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=55.77 E-value=45 Score=27.78 Aligned_cols=37 Identities=5% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.+.++.+ ..+++.|+.|.|+.|..
T Consensus 28 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~a 65 (260)
T PRK07827 28 NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCA 65 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccC
Confidence 35899999999999999864 56899999999987765
No 126
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=55.70 E-value=22 Score=29.73 Aligned_cols=37 Identities=14% Similarity=0.410 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.+.++. +..+++.|+.|.|+.|..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~a 67 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAA 67 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeC
Confidence 3589999999999999986 456899999999987765
No 127
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=55.65 E-value=45 Score=27.93 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.| ..|..
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~a 63 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEe
Confidence 35899999999999999864 558889999988 56654
No 128
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=55.57 E-value=16 Score=28.41 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=36.1
Q ss_pred cceEEEEEeec-------ceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 89 KWQRVLLKVSG-------EALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 89 kykRVLLKLSG-------EaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
++|=||+++.. .++.|.....+..+.++++.+++++ .|.+ +=++|||.|-..
T Consensus 14 ~fKYvLi~v~~~~~~~~k~iVRG~~~~~yH~di~d~~~~el~~---~gl~-~~clGGGrI~hd 72 (108)
T PF05005_consen 14 VFKYVLIRVTDHGSGESKYIVRGYKRAEYHADIYDEVQEELEK---LGLC-TECLGGGRIEHD 72 (108)
T ss_dssp EEEEEEEEEES-G---EEEEEEEETT-SSHHHHHHHHHHHHHH---CTEE-EEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCCCEEEEEEECCcchhhHHHHHHHHHHHHHH---cCCe-EEEeCCcEEEeC
Confidence 57888999887 2333444445677788888777765 5764 458899999775
No 129
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=55.11 E-value=23 Score=27.69 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=33.8
Q ss_pred eEEEEEeecceecCCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNID-PKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD-~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
|.|++-|-|=.+..+++ .++ .+......+.|+++.+.|++|.++.|=.--.+
T Consensus 2 K~i~~DiDGTL~~~~~~-~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-DYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred CEEEEeCCCCcccCCCC-cccccccCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 46788888887653321 121 22445666778888889999999987544443
No 130
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=54.33 E-value=47 Score=27.90 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=36.2
Q ss_pred eEEEEEeecceec-----CCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC--Chhhhh
Q 030876 91 QRVLLKVSGEALA-----GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG--GNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLa-----gd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG--GNI~RG 144 (170)
..|++.+.|.+.- +++..-++++.+.++.+.+.++.+..+++.|+.|+ |..|..
T Consensus 4 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~Fca 64 (261)
T PRK11423 4 QYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSA 64 (261)
T ss_pred cceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeEC
Confidence 3445555554431 22234589999999999999987766888888773 366654
No 131
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=54.25 E-value=35 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=37.7
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
+|-|.+-|=|=.|..+ ..++++. .+.|+++.+.|++++|+.|= -++.. ...+++|++
T Consensus 3 ~kli~~DlDGTLl~~~--~~i~~~~----~~ai~~l~~~G~~~~iaTGR--~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--HTISPAV----KQAIAAARAKGVNVVLTTGR--PYAGVHRYLKELHME 60 (270)
T ss_pred eEEEEEecCCcCcCCC--CccCHHH----HHHHHHHHHCCCEEEEecCC--ChHHHHHHHHHhCCC
Confidence 6678889999988543 2466554 46788889999999888653 33332 233456654
No 132
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=54.24 E-value=19 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
.+.+.|+.+.+.|++++||.+|-..+-...+ +.+|++...
T Consensus 84 g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~ 123 (201)
T TIGR01491 84 YAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVY 123 (201)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEE
Confidence 4466788888899999999998655544443 347776543
No 133
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.23 E-value=21 Score=35.34 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=31.7
Q ss_pred ceecCCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 100 EALAGDHTQN-IDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 100 EaLagd~~~g-iD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+.|.-|++++ +|++.+..+++.|.++...|-||+||.
T Consensus 843 ~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIIS 880 (908)
T COG0419 843 ELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIIS 880 (908)
T ss_pred CeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4566788775 799999999999999999888988874
No 134
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=54.02 E-value=25 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=42.6
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCCc
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDR 155 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGidr 155 (170)
+|+.+++.+-|-...+.. .+....+.|+++.+.|++++||.....-...+ ...+++|++.
T Consensus 7 ~~~~~~~D~dG~l~~~~~-------~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH-------TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred cCCEEEEecccccccCCc-------cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 488899999998765432 25667788888888999999999976543332 2224578765
No 135
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=53.94 E-value=52 Score=31.58 Aligned_cols=37 Identities=11% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCcEEEEEEcC-Chhhhh
Q 030876 108 QNIDPKITMAIAREVASVT--RLGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~--~~GvqIAIVVGG-GNI~RG 144 (170)
.-++++.+.++.+.++++. +..+++.|+.|+ |..|+-
T Consensus 43 Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~Fca 82 (546)
T TIGR03222 43 NSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCS 82 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcC
Confidence 4589999999999999997 356899999986 577764
No 136
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=53.90 E-value=71 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.| +.|..
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~Fca 71 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVS 71 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceec
Confidence 45899999999999999874 468999999977 67765
No 137
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=53.15 E-value=56 Score=28.04 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.++++.+.+.++.+ ..+++.|+.|.|..|.-
T Consensus 26 Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~Fca 63 (288)
T PRK08290 26 NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSA 63 (288)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccc
Confidence 45899999999999999864 45899999999977654
No 138
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=52.96 E-value=26 Score=27.93 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=33.9
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHh------CCcEEEEEEc-CC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR------LGIEVAIVVG-GG 139 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~------~GvqIAIVVG-GG 139 (170)
--|+|.+|++-.+.| +.|.++...-+.+.++.+ .+-+|++|+= +|
T Consensus 6 ivi~lD~S~SM~a~D----~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~ 57 (183)
T cd01453 6 LIIVIDCSRSMEEQD----LKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNG 57 (183)
T ss_pred EEEEEECcHHHhcCC----CCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCC
Confidence 347999999977655 678899888888877765 3458988875 45
No 139
>PRK05869 enoyl-CoA hydratase; Validated
Probab=52.95 E-value=33 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=35.9
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.|+|.... ..-++++.+.++.+.+.++.+ ..+++.|+.|+|..|..
T Consensus 20 ~itlnrp~-----~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~Fca 66 (222)
T PRK05869 20 TLLLSRPP-----TNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSA 66 (222)
T ss_pred EEEECCCC-----CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCc
Confidence 56666542 135899999999999999874 67899999999877754
No 140
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=52.95 E-value=17 Score=31.65 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 104 GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 104 gd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
|..++|+|.+.|.+.-..+-...+. +.+ |+||-||+-|-
T Consensus 60 GkrG~GYnV~~L~~ff~~~Lg~~~~-tnv-iiVG~GnlG~A 98 (211)
T COG2344 60 GKRGYGYNVKYLRDFFDDLLGQDKT-TNV-IIVGVGNLGRA 98 (211)
T ss_pred CCCCCCccHHHHHHHHHHHhCCCcc-eeE-EEEccChHHHH
Confidence 6677888876665544443333232 454 46699999887
No 141
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.59 E-value=13 Score=28.68 Aligned_cols=28 Identities=36% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSADY 160 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataDy 160 (170)
+|.++|||.+|-...-++.++++...+.
T Consensus 38 ~I~~~GG~~~~l~~~l~~t~l~~~i~~~ 65 (154)
T PF03575_consen 38 AIFLGGGDTFRLLRQLKETGLDEAIREA 65 (154)
T ss_dssp EEEE--S-HHHHHHHHHHTTHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCCHHHHHHHH
Confidence 8899999999997633568877777664
No 142
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=52.45 E-value=29 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|+.|.-
T Consensus 24 Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~a 61 (255)
T PRK09674 24 NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAA 61 (255)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceec
Confidence 45899999999999999874 56899999999987764
No 143
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=51.98 E-value=17 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCC
Q 030876 114 ITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 153 (170)
Q Consensus 114 ~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGi 153 (170)
....+.+.|+++.+.|++++||.|+..-+-...+ +..|+
T Consensus 25 ~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~ 63 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGL 63 (139)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCC
Confidence 3455667788888889999999988744433323 33555
No 144
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=51.75 E-value=65 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.++++.+.+.++. +..+++.|+.|.|..|.-
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~a 64 (263)
T PRK07799 27 NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccc
Confidence 4589999999999999986 456899999998877754
No 145
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=51.22 E-value=17 Score=30.86 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCHHHHH-----HHHHHHHHHHhC--CcEEEEEEcCChh
Q 030876 109 NIDPKITM-----AIAREVASVTRL--GIEVAIVVGGGNI 141 (170)
Q Consensus 109 giD~~~l~-----~iA~eIkel~~~--GvqIAIVVGGGNI 141 (170)
+++...|+ .+|+.|++.... +.+|+||+|.||=
T Consensus 22 g~~~~~LMEnAG~aVa~~i~~~~~~~~~~~v~vlcG~GnN 61 (203)
T COG0062 22 GLPLDILMENAGLAVARAILREYPLGRARRVLVLCGPGNN 61 (203)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccCCEEEEEECCCCc
Confidence 34544444 467788887776 5689999999984
No 146
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=50.51 E-value=53 Score=23.19 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=35.6
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
..+.|+|-++|=.+ +|..-+..+.+.++++...|.++.++ |--.-.|
T Consensus 40 ~~~~vvlDls~v~~-------iDssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~ 86 (109)
T cd07041 40 RARGVIIDLTGVPV-------IDSAVARHLLRLARALRLLGARTILT-GIRPEVA 86 (109)
T ss_pred CCCEEEEECCCCch-------hcHHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHH
Confidence 36789999997655 57778889999999998899998866 4333333
No 147
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=50.16 E-value=9 Score=36.94 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCHHHHHH-----HHHHHHHHHhC--CcEEEEEEcCCh
Q 030876 109 NIDPKITMA-----IAREVASVTRL--GIEVAIVVGGGN 140 (170)
Q Consensus 109 giD~~~l~~-----iA~eIkel~~~--GvqIAIVVGGGN 140 (170)
|+....|++ +|+.|.+.... +.+|.|++|.||
T Consensus 108 Gis~~~LME~AG~avA~~I~~~~~~~~~~~VlVlcGpGN 146 (544)
T PLN02918 108 GFSVDQLMELAGLSVAASIAEVYKPGEYSRVLAICGPGN 146 (544)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcccccCCEEEEEECCCc
Confidence 455555554 34555544332 358999999998
No 148
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=50.09 E-value=32 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.+.++.+.++++. ..+++.|+.|.|..|.-
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~a 59 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCA 59 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceec
Confidence 3589999999999999987 56999999999976654
No 149
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.85 E-value=11 Score=27.42 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=12.3
Q ss_pred EEEEEEcCChhhhhhh
Q 030876 131 EVAIVVGGGNIFRGAS 146 (170)
Q Consensus 131 qIAIVVGGGNI~RG~~ 146 (170)
+-++|||||+.+....
T Consensus 8 ~~vlVvGgG~va~~k~ 23 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKA 23 (103)
T ss_dssp -EEEEEEESHHHHHHH
T ss_pred CEEEEECCCHHHHHHH
Confidence 5577899999998753
No 150
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=49.25 E-value=16 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
.+++.++++.++|++=..|.|||.+++-..
T Consensus 122 dl~~~l~~L~~~g~~~i~v~GG~~l~~~~l 151 (200)
T PF01872_consen 122 DLEEALRRLKERGGKDILVEGGGSLNGSFL 151 (200)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEechHHHHHHHH
Confidence 367788888888998888999999998754
No 151
>PLN02888 enoyl-CoA hydratase
Probab=49.19 E-value=37 Score=28.67 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|+.|..
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~a 69 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCS 69 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccC
Confidence 35899999999999999864 56899999999977754
No 152
>PRK05925 aspartate kinase; Provisional
Probab=49.14 E-value=27 Score=32.34 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=28.4
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.+|+|.+|..++ |.+.++++++.|++ + .+++|||=.
T Consensus 3 ~~V~KFGGtSv~-------~~e~i~~v~~ii~~--~--~~~vVVvSA 38 (440)
T PRK05925 3 PLVYKFGGTSLG-------TAESIRRVCDIICK--E--KPSFVVVSA 38 (440)
T ss_pred cEEEEECccccC-------CHHHHHHHHHHHhc--C--CCEEEEECC
Confidence 369999999996 57889999999975 2 467778754
No 153
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=49.06 E-value=35 Score=28.30 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-+|.+.++++.+.+.++.+ ..+++.|+.|.|+.|..
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~a 62 (249)
T PRK05870 25 NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCA 62 (249)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeec
Confidence 45899999999999999864 56899999999987765
No 154
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=49.05 E-value=34 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~a 58 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcC
Confidence 35899999999999999864 56899999998987765
No 155
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=48.26 E-value=39 Score=28.31 Aligned_cols=47 Identities=15% Similarity=0.348 Sum_probs=34.6
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
+|+|.-. ++...++.+.+.++.+.+.++. +..+++.|+.|.| +.|..
T Consensus 19 ~itlnrp----~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~a 67 (256)
T PRK06143 19 TLTIRNA----GSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIG 67 (256)
T ss_pred EEEEcCC----cccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccC
Confidence 4566532 2233589999999999999986 4568999999977 55544
No 156
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=48.18 E-value=37 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.++++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 22 Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~a 59 (248)
T PRK06072 22 NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCV 59 (248)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCccc
Confidence 35899999999999999964 45789999999987765
No 157
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=48.11 E-value=25 Score=32.97 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 111 DPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
-+-.++++|.|+.++.+.|-+|++|.|
T Consensus 182 ~e~~i~~IA~E~~ei~~kgGkIvvv~G 208 (415)
T COG1915 182 VETLIEQIAWEIREIRDKGGKIVVVAG 208 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 356799999999999999999888765
No 158
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=48.11 E-value=74 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.++++.+.+.++.+ ..+++.|+.|.|+.|.-
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~a 62 (262)
T PRK07509 25 NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCA 62 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCC
Confidence 35899999999999999874 45899999999987754
No 159
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=48.10 E-value=35 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.| +.|..
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~a 63 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSA 63 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEc
Confidence 3589999999999999886 4568999999977 56654
No 160
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=47.89 E-value=10 Score=29.67 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=20.7
Q ss_pred EEEEEEcCChhhhhhh-hhhcCCCCchhhh
Q 030876 131 EVAIVVGGGNIFRGAS-AAGNSGLDRSSAD 159 (170)
Q Consensus 131 qIAIVVGGGNI~RG~~-~Ar~lGidrataD 159 (170)
..++|+|+|+..+|+. .+..+|++....|
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 3577999999999974 5567888765554
No 161
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=47.18 E-value=69 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCCH-HHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 109 NIDP-KITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 109 giD~-~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.++. +.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 26 al~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~a 63 (266)
T PRK09245 26 ALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSS 63 (266)
T ss_pred CCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccc
Confidence 4774 889999999999864 56899999999988776
No 162
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=47.11 E-value=12 Score=31.89 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSADY 160 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataDy 160 (170)
+|.|||||.|+=...-++.|+++...+.
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 8999999999986533568888876553
No 163
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=46.80 E-value=38 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.++++.+.++++. +..+++.|+.|.|..|.-
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~a 62 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCA 62 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEc
Confidence 3589999999999999986 446899999999977754
No 164
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=46.70 E-value=45 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
..+|++.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~a 60 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSA 60 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEe
Confidence 35899999999999999864 56899999999977765
No 165
>PTZ00174 phosphomannomutase; Provisional
Probab=45.72 E-value=61 Score=26.66 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=33.9
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
++|-|++-|=|=.|..+ ..+++.. .+.|+++.++|++++|..|
T Consensus 4 ~~klia~DlDGTLL~~~--~~is~~~----~~ai~~l~~~Gi~~viaTG 46 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--NPITQEM----KDTLAKLKSKGFKIGVVGG 46 (247)
T ss_pred CCeEEEEECcCCCcCCC--CCCCHHH----HHHHHHHHHCCCEEEEEcC
Confidence 47889999999988644 3477643 4678888999999999888
No 166
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=45.69 E-value=74 Score=26.43 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++. +..+++.|+.|.|+.|.-
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~a 61 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSV 61 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccc
Confidence 3589999999999999886 356888999998876654
No 167
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=45.22 E-value=48 Score=29.35 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 121 EVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 121 eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
.|+.+.+.|++++||-||-..+-.... +.+|++...+.
T Consensus 189 lL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an 226 (322)
T PRK11133 189 LVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVAN 226 (322)
T ss_pred HHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEe
Confidence 477788899999999999877755544 35888775553
No 168
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=44.76 E-value=65 Score=25.29 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=37.8
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
+|-|++-|-|=.|..+ ..++++ ..+.|+++.+.|+.++|+.|=.-.+-. ...+.+|++
T Consensus 3 ~kli~~DlDGTLl~~~--~~i~~~----~~~al~~l~~~G~~~~iaTGR~~~~~~-~~~~~l~~~ 60 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--RRLSLK----AVEAIRKAEKLGIPVILATGNVLCFAR-AAAKLIGTS 60 (230)
T ss_pred eeEEEEecCCCcCCCC--CccCHH----HHHHHHHHHHCCCEEEEEcCCchHHHH-HHHHHhCCC
Confidence 5677889999988543 235554 446688888999999999875433221 233456665
No 169
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=44.37 E-value=28 Score=27.51 Aligned_cols=35 Identities=34% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH--hCCcEEEEEEcCChh-hhhhhhhh
Q 030876 115 TMAIAREVASVT--RLGIEVAIVVGGGNI-FRGASAAG 149 (170)
Q Consensus 115 l~~iA~eIkel~--~~GvqIAIVVGGGNI-~RG~~~Ar 149 (170)
=..+|+.|++.. ..+-+|.|++|.||= ..|+-+||
T Consensus 9 g~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR 46 (169)
T PF03853_consen 9 GRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAAR 46 (169)
T ss_dssp HHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHH
Confidence 356788888888 666799999998874 33443443
No 170
>PRK08329 threonine synthase; Validated
Probab=44.32 E-value=79 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=37.0
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
.+|.+|+-+ +.+.. .+ +.+.....|.++.+.|.+-.|+...||..+... .++..|+
T Consensus 72 ~~l~~K~E~--~nPtG--Sf---KdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~ 128 (347)
T PRK08329 72 IKVYFKLDY--LQPTG--SF---KDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGI 128 (347)
T ss_pred CeEEEEeCC--CCCCc--CC---HHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCC
Confidence 378999844 44332 12 234555567677778888889999999999854 3344555
No 171
>PRK10976 putative hydrolase; Provisional
Probab=44.05 E-value=60 Score=26.35 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=37.4
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
+|-|++-|=|=.|..+ ..+++.. .+.|+++.+.|++++|..|= -++.. ...+.+|++
T Consensus 2 ikli~~DlDGTLl~~~--~~is~~~----~~ai~~l~~~G~~~~iaTGR--~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--HTLSPYA----KETLKLLTARGIHFVFATGR--HHVDVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCC--CcCCHHH----HHHHHHHHHCCCEEEEEcCC--ChHHHHHHHHhcCCC
Confidence 4567888889888543 2466543 56788899999999988763 33332 133456665
No 172
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=43.92 E-value=44 Score=27.95 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~Fca 62 (254)
T PRK08259 25 NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCA 62 (254)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccC
Confidence 3589999999999999985 356899999999987765
No 173
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=43.80 E-value=13 Score=30.40 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=22.1
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSADYI 161 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataDyI 161 (170)
+|+++|||.+|-...-++.|+++...++.
T Consensus 83 ~I~l~GG~~~~~~~~l~~~~l~~~l~~~~ 111 (212)
T cd03146 83 VIYVGGGNTFNLLAQWREHGLDAILKAAL 111 (212)
T ss_pred EEEECCchHHHHHHHHHHcCHHHHHHHHH
Confidence 67888899999976335678888877654
No 174
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=43.73 E-value=78 Score=22.27 Aligned_cols=48 Identities=8% Similarity=0.053 Sum_probs=36.1
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
..++|+|.+|+=-+ +|..-+..+.+.++++.+.|.++.++-=...+.+
T Consensus 38 ~~~~vilDls~v~~-------iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~ 85 (100)
T cd06844 38 AGKTIVIDISALEF-------MDSSGTGVLLERSRLAEAVGGQFVLTGISPAVRI 85 (100)
T ss_pred CCCEEEEECCCCcE-------EcHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 36789999986544 6888889999999999999999887743344333
No 175
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=43.70 E-value=99 Score=25.82 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
.-+|.+.+.++.+.++++. +..+++.|+.|.| ..|.-
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~a 64 (259)
T PRK06494 26 NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSA 64 (259)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceec
Confidence 3589999999999999986 4568999999966 45554
No 176
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=43.22 E-value=30 Score=26.81 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
...+.+.|+++.+.|++++||.....++|+
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~ 57 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSGIARG 57 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCccccCC
Confidence 456778889999999999999999877665
No 177
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=43.09 E-value=26 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
..++++|+++. .+.+-..|+|||.+++-..
T Consensus 78 ~~~~~~v~~lk-~~~~~I~v~GG~~l~~~~l 107 (158)
T cd00209 78 HSLEEALELAE-NTVEEIFVIGGAEIYKQAL 107 (158)
T ss_pred CCHHHHHHHHh-cCCCeEEEECcHHHHHHHH
Confidence 34556666665 3344556889999998765
No 178
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=42.30 E-value=44 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
..++++.+.++.+.+.++. +..+++.|+.|.|..|..
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~ 62 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCA 62 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCccc
Confidence 3589999999999999997 356898999898877755
No 179
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=42.23 E-value=35 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=24.3
Q ss_pred HHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 121 EVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 121 eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
.|+++.+.|++++||.++....-...+ +.+|++.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~ 69 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITH 69 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCE
Confidence 688888999999999998754333333 4466653
No 180
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.18 E-value=28 Score=27.53 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
.++-..|+++.+.|++ +||||+... .+|++.|++-
T Consensus 112 ~e~~~~i~~~~~~G~~--viVGg~~~~---~~A~~~gl~~ 146 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVD--VIVGGGVVC---RLARKLGLPG 146 (176)
T ss_dssp HHHHHHHHHHHHTT----EEEESHHHH---HHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCc--EEECCHHHH---HHHHHcCCcE
Confidence 4566778888888855 578999764 3455677653
No 181
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=42.08 E-value=50 Score=26.97 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=35.1
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..|.|... +..-++++.+.++.+.+.++. ...++.|+.|.|..|..
T Consensus 14 ~~itln~~-----~~Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~ 59 (229)
T PRK06213 14 ATITLDDG-----KVNALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSG 59 (229)
T ss_pred EEEEeCCC-----CCCCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEc
Confidence 35666643 123589999999999999987 45799999999988765
No 182
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=42.00 E-value=28 Score=28.14 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 118 IAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 118 iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
+++.++++.+.|++=..|.|||.++....
T Consensus 129 l~~~l~~L~~~g~~~vlveGG~~l~~~fl 157 (217)
T PRK05625 129 LPDLLEDLYERGIKRLMVEGGGTLIWSMF 157 (217)
T ss_pred HHHHHHHHHHCCCCEEEEecCHHHHHHHH
Confidence 44556666667887778889999998754
No 183
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=41.89 E-value=59 Score=25.00 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
..+|.+.++++.+.++++.+ ..+++.|+.|.|..|..
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~ 58 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCA 58 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEe
Confidence 35899999999999999985 45788888887776654
No 184
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=41.10 E-value=50 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=39.9
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCCc
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDR 155 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGidr 155 (170)
.+|-|.+-|-|=.|..+. .+. .+..+.|+++.+.|++++|+.|- -++.. ...++++++-
T Consensus 2 ~~kli~~DlDGTLl~~~~--~i~----~~~~~al~~~~~~g~~v~iaTGR--~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK--TIS----PETKEALARLREKGVKVVLATGR--PLPDVLSILEELGLDG 61 (264)
T ss_pred CeeEEEEcCCCCccCCCC--ccC----HHHHHHHHHHHHCCCEEEEECCC--ChHHHHHHHHHcCCCc
Confidence 367788999999886543 244 45556677888999999988753 34553 3445666654
No 185
>PRK08788 enoyl-CoA hydratase; Validated
Probab=40.90 E-value=61 Score=28.22 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh------CCcEEEEEEcC-Chhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR------LGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~------~GvqIAIVVGG-GNI~RG 144 (170)
.-++++.+.++.+.+.++.+ ..+++.|+.|. |..|..
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~Fca 81 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNL 81 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEe
Confidence 35899999999999999864 46788899997 777764
No 186
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=40.18 E-value=49 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCch
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS 156 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidra 156 (170)
..+.+.|+.+.+.|++++|+.++....-...+ +.+|+++.
T Consensus 96 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~ 135 (226)
T PRK13222 96 PGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADY 135 (226)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccC
Confidence 44556677777889999999988765544443 34666543
No 187
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=40.07 E-value=64 Score=26.88 Aligned_cols=37 Identities=11% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
..++++.+.++.+.+.++.+ ..+++.|+.|.|..|.-
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~Fca 62 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCA 62 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccc
Confidence 35899999999999999864 46899999999988864
No 188
>PLN02600 enoyl-CoA hydratase
Probab=40.00 E-value=58 Score=27.14 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcC-Chhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGG-GNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|+ |+.|..
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~a 55 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCA 55 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceee
Confidence 35899999999999999864 45788888886 566654
No 189
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=39.63 E-value=58 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
-++++.+.++.+.+.++. +..+++.|+.|.|..|.-
T Consensus 24 al~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~a 60 (249)
T PRK07938 24 ALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNA 60 (249)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceec
Confidence 589999999999999986 457899999999977765
No 190
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=39.44 E-value=34 Score=28.11 Aligned_cols=33 Identities=33% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCCh-hhhhhhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAG 149 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGN-I~RG~~~Ar 149 (170)
.+|+.+.+....+.+|.|++|-|| =-.|+-+||
T Consensus 33 ~va~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR 66 (205)
T TIGR00197 33 AVAQAVLQAFPLAGHVIIFCGPGNNGGDGFVVAR 66 (205)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHH
Confidence 345556555445678999999665 344444444
No 191
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=39.42 E-value=14 Score=27.13 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=22.8
Q ss_pred eecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 97 VSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 97 LSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
+|||.|+. .-|+.-.. +-+.|+++.+.|++|-.|.+
T Consensus 20 ~SGe~La~--~LgiSRta---VwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 20 VSGEKLAE--ELGISRTA---VWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred ccHHHHHH--HHCccHHH---HHHHHHHHHHhCCceEecCC
Confidence 45555542 23556544 44556666688999998866
No 192
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=39.40 E-value=61 Score=27.11 Aligned_cols=37 Identities=11% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.|+.|.-
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~a 64 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccC
Confidence 3589999999999999986 456889999998877665
No 193
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=39.36 E-value=64 Score=26.29 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=24.3
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
|||+|=++|..-+ -+..+.++++.+.|++|-+|+
T Consensus 2 k~Ill~vtGsiaa------------~~~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAA------------YKAADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHH------------HHHHHHHHHHHHCCCEEEEEE
Confidence 6899999998532 234455566667799998776
No 194
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=39.28 E-value=67 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=37.7
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
+|-|++-|-|=.|..++ .+. ....+.|+++.+.|++++|+.|--. +.. ...+++|++
T Consensus 4 ~kli~~DlDGTLl~~~~--~~~----~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT--YSY----EPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCC--cCc----HHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCC
Confidence 67789999999885332 233 3355778889999999998876533 222 233457765
No 195
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=39.11 E-value=42 Score=24.90 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
..+.+.|+.+.+.|++++||.++-... ..... ++|+.+
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~-~~~l~~ 125 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRDH-AVLVQ-ELGLRD 125 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHH-hcCCHH
Confidence 345566778888899999999988776 33332 266644
No 196
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=39.02 E-value=44 Score=26.16 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
...+.|+++.+.|++++||.+|=..+-...+ +.+|++...+
T Consensus 89 g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~ 129 (219)
T TIGR00338 89 GAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFA 129 (219)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEe
Confidence 3455677787889999999986433322223 4577766543
No 197
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.66 E-value=36 Score=27.75 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhCCc--EEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 112 PKITMAIAREVASVTRLGI--EVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~Gv--qIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
.+.++++.+++++ .|. ++-|+|||.-+ +- .+++++|.|-...|
T Consensus 149 ~~~~~~~i~~l~~---~~~~~~v~i~vGG~~~-~~-~~~~~~gad~~~~d 193 (197)
T TIGR02370 149 MYGQKDINDKLKE---EGYRDSVKFMVGGAPV-TQ-DWADKIGADVYGEN 193 (197)
T ss_pred HHHHHHHHHHHHH---cCCCCCCEEEEEChhc-CH-HHHHHhCCcEEeCC
Confidence 3345555555554 444 37788887554 32 45667777654443
No 198
>PRK05920 aromatic acid decarboxylase; Validated
Probab=38.58 E-value=63 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.1
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
-|||+|=|+|..- .-+..+.++++.+.|++|-+|+
T Consensus 3 ~krIllgITGsia------------a~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASG------------AIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHH------------HHHHHHHHHHHHHCCCEEEEEE
Confidence 3789999999753 2356677788888899998877
No 199
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=38.53 E-value=59 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.9
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+||+|=|+|..= .++.+.+.++++.+.|++|-+|+
T Consensus 1 ~~I~lgITGs~~-----------a~~a~~~ll~~L~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHC-----------TLEAVMPQLEKLVDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHH-----------HHHHHHHHHHHHHhCcCEEEEEE
Confidence 589999999742 24555588888888899997776
No 200
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=38.47 E-value=64 Score=27.92 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEE---cCChhhhhhhhhhcCCCCc
Q 030876 109 NIDPKITMAIAREVASVTRLGIEVAIVV---GGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~GvqIAIVV---GGGNI~RG~~~Ar~lGidr 155 (170)
..|.+.|+++ |.++++.|+.|.-|| |++|+ + -| +++|+.+
T Consensus 192 ~m~~~~l~~i---I~~l~~~g~~VvAivsD~g~~N~--~-~w-~~Lgi~~ 234 (236)
T PF12017_consen 192 SMDADILKNI---IEKLHEIGYNVVAIVSDMGSNNI--S-LW-RELGISE 234 (236)
T ss_pred cCCHHHHHHH---HHHHHHCCCEEEEEECCCCcchH--H-HH-HHcCCCC
Confidence 4688788765 677889999876555 55554 2 23 5688865
No 201
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=38.36 E-value=53 Score=27.50 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=40.8
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh-h--hhhhcCCCCch
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-A--SAAGNSGLDRS 156 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG-~--~~Ar~lGidra 156 (170)
+|+-|++-+-|=.+.+++ .+....+.|+++.+.|+++++|.+...--|. + .+ +++|++..
T Consensus 1 ~~~~~~~D~DGtl~~~~~-------~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~ 63 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGER-------VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGL 63 (279)
T ss_pred CccEEEEeCCCceEcCCe-------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCC
Confidence 367788888888776542 2344567788888899999999997644333 3 24 45888643
No 202
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=38.36 E-value=75 Score=26.03 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGid 154 (170)
+|-|++-|=|=.|..++ .++++. .+.|+++.+.|+.++++.| +-++... ..+++|++
T Consensus 2 ~kli~~DlDGTLl~~~~--~i~~~~----~~ai~~l~~~G~~~~iaTG--R~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH--HLGEKT----LSTLARLRERDITLTFATG--RHVLEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCC--cCCHHH----HHHHHHHHHCCCEEEEECC--CCHHHHHHHHHHcCCC
Confidence 45678888898886442 466544 4678888899999988865 3333422 33456765
No 203
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=38.32 E-value=1.2e+02 Score=24.49 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=37.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCC---cEEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG---IEVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~G---vqIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
.++.+|.-+.--.|. + +.+.....+..+.+.| .+..|.-++||..+... .++..|+
T Consensus 15 ~~l~~K~e~~~ptgS----~---K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 15 ANIYLKLEFLNPTGS----F---KDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CEEEEEecccCCcCC----c---HHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 478999877743321 2 3455556666676777 67788888999999864 4455665
No 204
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=38.19 E-value=90 Score=27.14 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=37.0
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC--Chhhhhhh-hhhcCCCC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG--GNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG--GNI~RG~~-~Ar~lGid 154 (170)
+|.+|+-...- .. .+--.+.+.+...+.++.++|+...+-.|| ||..+... +|+.+|+.
T Consensus 32 ~l~~K~E~~n~--~~--~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~ 93 (337)
T TIGR01274 32 TLYAKREDCNS--GL--AFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMK 93 (337)
T ss_pred eEEEEccCCcC--Cc--CccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCc
Confidence 68888866421 10 112224567777788888888764444466 89999954 55667764
No 205
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=38.10 E-value=1.2e+02 Score=27.26 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
..+|.+.+.++.+.+.++.+ ..+++.|+.|.|..|.-
T Consensus 33 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~Fca 70 (379)
T PLN02874 33 NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSA 70 (379)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccC
Confidence 45899999999999999864 56898999998877654
No 206
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=38.00 E-value=1.6e+02 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.++++.+ ..+++.|+.|.|..|..
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~a 71 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSA 71 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCccc
Confidence 35899999999999999864 45899999999877754
No 207
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=38.00 E-value=87 Score=20.93 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=32.1
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.++|++.+++=.. +|..-+..+.+.++++.+.|.++.++ |--.
T Consensus 38 ~~~viid~~~v~~-------iDs~g~~~L~~l~~~~~~~g~~v~i~-~~~~ 80 (99)
T cd07043 38 PRRLVLDLSGVTF-------IDSSGLGVLLGAYKRARAAGGRLVLV-NVSP 80 (99)
T ss_pred CCEEEEECCCCCE-------EcchhHHHHHHHHHHHHHcCCeEEEE-cCCH
Confidence 4788888887433 67778889999999998889886644 5443
No 208
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=37.43 E-value=20 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.5
Q ss_pred EEEEEcCChhhhhh
Q 030876 132 VAIVVGGGNIFRGA 145 (170)
Q Consensus 132 IAIVVGGGNI~RG~ 145 (170)
-++|||||.++-..
T Consensus 27 ~VLVVGGG~VA~RK 40 (223)
T PRK05562 27 KVLIIGGGKAAFIK 40 (223)
T ss_pred EEEEECCCHHHHHH
Confidence 47899999998664
No 209
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=37.09 E-value=97 Score=24.69 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=28.8
Q ss_pred EEEEEeecceecC-CCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEEcCChh
Q 030876 92 RVLLKVSGEALAG-DHTQNIDPKITMAIAREVASVTRLGIE-VAIVVGGGNI 141 (170)
Q Consensus 92 RVLLKLSGEaLag-d~~~giD~~~l~~iA~eIkel~~~Gvq-IAIVVGGGNI 141 (170)
||+||.-=-...+ +.+...+|+.++.+++.+++. |.+ |.|.-+.+..
T Consensus 1 ~V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~---g~~~i~i~e~~~~~ 49 (206)
T PF04015_consen 1 RVLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEA---GAKEIIIAESPGSG 49 (206)
T ss_pred CEEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHc---CCCceEEEeCCCcc
Confidence 5777775433221 123457999999999999754 544 5555554443
No 210
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=36.97 E-value=68 Score=26.73 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.| +.|..
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~a 64 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEc
Confidence 3589999999999999986 4568999999977 46554
No 211
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=36.42 E-value=42 Score=23.07 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..+.++|+.+...|+..+||||-=..-.|
T Consensus 39 ~~~~k~~~~a~~~g~p~~iiiG~~e~~~~ 67 (94)
T PF03129_consen 39 KSLGKQIKYADKLGIPFIIIIGEKELENG 67 (94)
T ss_dssp STHHHHHHHHHHTTESEEEEEEHHHHHTT
T ss_pred CchhHHHHHHhhcCCeEEEEECchhHhCC
Confidence 45668899999999999999997666555
No 212
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=36.35 E-value=82 Score=26.29 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFR 143 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~R 143 (170)
..++++.+.++.+.+.++.+ ..+++.|+.|.| +.|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~ 61 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFS 61 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceE
Confidence 35899999999999999873 578999999977 5554
No 213
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=36.20 E-value=57 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=19.7
Q ss_pred CCCHHHHHHHH-HHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 109 NIDPKITMAIA-REVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA-~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.++...+.+-| +.|.++.+.| ++.|||||=.++=.
T Consensus 35 ~ysv~~f~~~a~~~i~~i~~rg-k~PIlvGGTglYi~ 70 (253)
T PF01715_consen 35 EYSVGDFQRDAREAIEDILARG-KIPILVGGTGLYIQ 70 (253)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcC-CeEEEECChHHHHH
Confidence 34544444444 4567788776 88889998766544
No 214
>PLN02954 phosphoserine phosphatase
Probab=36.10 E-value=61 Score=25.44 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
..+.+.|+.+.+.|++++||.||...+=...+ +.+|+++
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~ 125 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPP 125 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCCh
Confidence 34556677777889999999999876544444 3578763
No 215
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.05 E-value=23 Score=27.97 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=12.0
Q ss_pred EEEEEEcCChhhhhh
Q 030876 131 EVAIVVGGGNIFRGA 145 (170)
Q Consensus 131 qIAIVVGGGNI~RG~ 145 (170)
+-++|||||+++...
T Consensus 14 ~~vlVvGGG~va~rk 28 (157)
T PRK06719 14 KVVVIIGGGKIAYRK 28 (157)
T ss_pred CEEEEECCCHHHHHH
Confidence 447899999998874
No 216
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=35.85 E-value=58 Score=27.21 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC-hhhhh
Q 030876 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG-NI~RG 144 (170)
-++.+.+.++.+.++++. +..+++.|+.|.| +.|..
T Consensus 25 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~a 62 (261)
T PRK03580 25 AIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSA 62 (261)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceec
Confidence 589999999999999986 4568888888977 66654
No 217
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=35.70 E-value=59 Score=30.31 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=43.3
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~G-vqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
++-+.+-..|+.+.- ..+..+.-....+.|+++.+.| ++++||.|.-...-... ++++|++..++
T Consensus 364 ~~~~~v~~~~~~~g~---i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i-~~~lgi~~~f~ 429 (556)
T TIGR01525 364 KTVVFVAVDGELLGV---IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAV-AAELGIDEVHA 429 (556)
T ss_pred cEEEEEEECCEEEEE---EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHH-HHHhCCCeeec
Confidence 444666666765431 2334445677888899999999 99999998766543333 45688876554
No 218
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=35.47 E-value=1.3e+02 Score=27.39 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.3
Q ss_pred ceEEEEEeecceecCCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 90 WQRVLLKVSGEALAGDHTQNI-DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~gi-D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
++-|++-|-|-.+..++...| | ..+.+.|+++.+.|+.+||+.+|+...=...+ +++|+++-+
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~ird----PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YF 189 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRD----PRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYF 189 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCC----HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCccc
Confidence 667899999998764421112 3 45667888888999999999988765333334 357887543
No 219
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=35.45 E-value=43 Score=29.43 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 109 NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
+++|...+++-.++..+.+.| -|++|+||=|+|--
T Consensus 106 Ny~Pp~~kr~lAk~v~v~k~g-vIglii~G~~pF~~ 140 (226)
T KOG3286|consen 106 NYPPPAWKRYLAKVVSVVKMG-VIGLIIGGKNPFEF 140 (226)
T ss_pred cCCCchHHHHHHHHHHHHhhe-eEEEEeccCCccce
Confidence 578889999999999999996 68899999998853
No 220
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.39 E-value=81 Score=28.49 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=40.0
Q ss_pred EEEEEeecceecCC--CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhh
Q 030876 92 RVLLKVSGEALAGD--HTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (170)
Q Consensus 92 RVLLKLSGEaLagd--~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~ 142 (170)
-||+..+--+..+| ...++..+-..++.+.|+++.. .+.++++|.|||=-.
T Consensus 242 lvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~ 295 (340)
T COG0123 242 LVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNL 295 (340)
T ss_pred EEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCh
Confidence 68999999999888 3456788888888888888765 356899999999443
No 221
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=35.22 E-value=27 Score=30.69 Aligned_cols=29 Identities=48% Similarity=0.828 Sum_probs=23.1
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEc
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVG 137 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv-qIAIVVG 137 (170)
|||+-||.+- + ++|+.|++.|+ .|.||||
T Consensus 25 LlkV~g~plI------------E---rqI~~L~e~gI~dI~IVvG 54 (231)
T COG4750 25 LLKVNGEPLI------------E---RQIEQLREAGIDDITIVVG 54 (231)
T ss_pred HHHhcCcccH------------H---HHHHHHHHCCCceEEEEee
Confidence 8999999762 2 57777888886 8999998
No 222
>PRK06769 hypothetical protein; Validated
Probab=35.12 E-value=51 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=36.9
Q ss_pred cceEEEEEeecceecCCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNI---DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~gi---D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.||-|+|-.-|-. .+... -. +.+.+..+.+.|+++.+.|++++||.....+.++
T Consensus 3 ~~~~~~~d~d~~~-~~~~~-~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~ 59 (173)
T PRK06769 3 NIQAIFIDRDGTI-GGDTT-IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADG 59 (173)
T ss_pred CCcEEEEeCCCcc-cCCCC-CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCC
Confidence 3778888877774 33311 11 1223567788889999999999999988765543
No 223
>PLN02887 hydrolase family protein
Probab=34.96 E-value=81 Score=30.51 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=34.5
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
++|-|++-|=|=.|..+ ..+++.. .+.|+++.++|+.++|..|=
T Consensus 307 ~iKLIa~DLDGTLLn~d--~~Is~~t----~eAI~kl~ekGi~~vIATGR 350 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--SQISETN----AKALKEALSRGVKVVIATGK 350 (580)
T ss_pred CccEEEEeCCCCCCCCC--CccCHHH----HHHHHHHHHCCCeEEEEcCC
Confidence 68899999999998643 2466554 47789999999999888763
No 224
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=31 Score=31.21 Aligned_cols=41 Identities=37% Similarity=0.706 Sum_probs=30.0
Q ss_pred HHhCCcEEEEEEcCChhhhhhh--hhhcCCCCchh------hhhhhhee
Q 030876 125 VTRLGIEVAIVVGGGNIFRGAS--AAGNSGLDRSS------ADYIGYFL 165 (170)
Q Consensus 125 l~~~GvqIAIVVGGGNI~RG~~--~Ar~lGidrat------aDyIGMLA 165 (170)
+.+.|.++.+||+||.|.-... -|+..|+++.- .|.+|++.
T Consensus 174 ik~~~~~vv~vVrg~PIlnDaT~EDak~~~i~~i~~vittG~~~vGi~l 222 (285)
T COG1578 174 IKELGKKVVVVVRGGPILNDATMEDAKEAGIDEIAKVITTGSDIVGIWL 222 (285)
T ss_pred HHhcCCceEEEEcCCceechhhHHHHHHcCcchhheeecCCCCcceeeH
Confidence 4456789999999999998863 55668887753 36666653
No 225
>PTZ00063 histone deacetylase; Provisional
Probab=34.91 E-value=71 Score=30.13 Aligned_cols=49 Identities=29% Similarity=0.447 Sum_probs=33.8
Q ss_pred EEEEEeecceecCCCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 92 RVLLKVSGEALAGDHTQ--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~--giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
-||+..+--++.+|.-. ++.. +.+++.++.+.+.+..+++|.|||-..+
T Consensus 253 ~IvvqaG~D~~~~DpLg~l~Lt~---~g~~~~~~~~~~~~~pil~l~gGGY~~~ 303 (436)
T PTZ00063 253 AIVLQCGADSLTGDRLGRFNLTI---KGHAACVEFVRSLNIPLLVLGGGGYTIR 303 (436)
T ss_pred EEEEECCccccCCCCCCCcccCH---HHHHHHHHHHHhcCCCEEEEeCccCCch
Confidence 48888888999888533 3444 4455555555666789999988885443
No 226
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=34.79 E-value=49 Score=26.08 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
.+.+.|+++.+.||+|+||.==+.+.|
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi~~ 59 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGIGR 59 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCCCC
T ss_pred hHHHHHHHHHhcCCeEEEEeCcccccc
Confidence 377888899999999999986666666
No 227
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=34.74 E-value=45 Score=29.00 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=34.0
Q ss_pred EEEEEeecceecCCC--CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCC
Q 030876 92 RVLLKVSGEALAGDH--TQNIDPKITMAIAREVASVTRL-GIEVAIVVGGG 139 (170)
Q Consensus 92 RVLLKLSGEaLagd~--~~giD~~~l~~iA~eIkel~~~-GvqIAIVVGGG 139 (170)
-||+..+--++.+|. ...+.++-+.++.+.|+++.+. +.+|++|.|||
T Consensus 243 ~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGG 293 (311)
T PF00850_consen 243 LIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGG 293 (311)
T ss_dssp EEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-
T ss_pred EEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 488888888998885 3357888888899998888762 12888888887
No 228
>PRK08139 enoyl-CoA hydratase; Validated
Probab=34.71 E-value=70 Score=26.92 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~a 70 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCA 70 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCccee
Confidence 35899999999999999864 45899999999987765
No 229
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=34.52 E-value=1.1e+02 Score=26.96 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=25.2
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
|.|||++=..+- ++.|. ++..+|+. +.+.||+|.||...+
T Consensus 2 ~~~~~~~~~~~~-------~~~~~-R~~~~a~~---L~~~G~~V~ii~~~~ 41 (415)
T cd03816 2 KRKRVCVLVLGD-------IGRSP-RMQYHALS---LAKHGWKVDLVGYLE 41 (415)
T ss_pred CccEEEEEEecc-------cCCCH-HHHHHHHH---HHhcCceEEEEEecC
Confidence 567877665532 23454 34445555 556799999998654
No 230
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=34.39 E-value=1.2e+02 Score=26.31 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=37.0
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC--Chhhhhhh-hhhcCCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG--GNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG--GNI~RG~~-~Ar~lGid 154 (170)
.+|.+|+-+.---+ .+.-.+.+.+...|.++.+.|+...+..|| ||..+... +++.+|+.
T Consensus 32 ~~v~~K~E~~n~~~----~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~ 94 (337)
T PRK12390 32 VELYAKREDCNSGL----AFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMK 94 (337)
T ss_pred CeEEEEeCCCCCCC----CccchhHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCe
Confidence 46888887653211 111123467777788888888854444444 89999954 55556753
No 231
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=34.28 E-value=78 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.|..|.-
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~Fca 69 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSS 69 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeec
Confidence 35899999999999999864 45899999999987764
No 232
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.25 E-value=82 Score=25.61 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=27.4
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE--cCChhhhh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV--GGGNIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV--GGGNI~RG 144 (170)
|||+|=++|..-+ -+..+.++++.+.|++|-+|+ .+-++++.
T Consensus 1 k~I~lgvtGs~~a------------~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 1 KKILLAVTGSIAA------------YKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred CEEEEEEcCHHHH------------HHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 5899999998532 233466666677799997776 23344444
No 233
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=34.24 E-value=89 Score=26.16 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~RG 144 (170)
.-++++.+.++.+.+.++.+ ..+++.|+.|.|..|..
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~Fca 59 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSF 59 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceec
Confidence 35899999999999999863 55788888898887764
No 234
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=34.09 E-value=74 Score=26.79 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.3
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+-|||+|=++|..-+ ++...+.++++.+.|++|-+|+
T Consensus 4 ~~k~IllgVTGsiaa-----------~k~a~~lir~L~k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCT-----------YDEVMPEIEKLVDEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHH-----------HHHHHHHHHHHHhCcCEEEEEE
Confidence 357899999997532 3335677788888899997776
No 235
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=33.86 E-value=44 Score=27.01 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhCCc--EEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 112 PKITMAIAREVASVTRLGI--EVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~Gv--qIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
.+.++++.+++++ .+. ++-|+|||.-+ ... .++.+|.|-...|
T Consensus 147 ~~~~~~~i~~lr~---~~~~~~~~i~vGG~~~-~~~-~~~~~GaD~~~~d 191 (201)
T cd02070 147 MGGMKEVIEALKE---AGLRDKVKVMVGGAPV-NQE-FADEIGADGYAED 191 (201)
T ss_pred HHHHHHHHHHHHH---CCCCcCCeEEEECCcC-CHH-HHHHcCCcEEECC
Confidence 4456666666665 444 78888888754 432 4456787765544
No 236
>PRK10949 protease 4; Provisional
Probab=33.82 E-value=70 Score=31.18 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=43.5
Q ss_pred cceEEEEEe---ecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhh
Q 030876 89 KWQRVLLKV---SGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGY 163 (170)
Q Consensus 89 kykRVLLKL---SGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGM 163 (170)
+.|-|||+| +|+++ ..+.+.++|+++.+.|..|.+.+|+=---.||-+| ...|+..++-.++
T Consensus 364 ~vkaVvLrInSpGGs~~-----------ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA--~aad~I~a~p~t~ 428 (618)
T PRK10949 364 KVKAIVLRVNSPGGSVT-----------ASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIS--TPANYIVASPSTL 428 (618)
T ss_pred CCcEEEEEecCCCCcHH-----------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHH--HhcCEEEECCCCc
Confidence 578899998 44443 46788899999887777777777766555666543 3567777777443
No 237
>PLN02921 naphthoate synthase
Probab=33.54 E-value=1.5e+02 Score=26.26 Aligned_cols=56 Identities=13% Similarity=0.308 Sum_probs=38.3
Q ss_pred cceEEEEEee--ccee----c-CCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 89 KWQRVLLKVS--GEAL----A-GDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 89 kykRVLLKLS--GEaL----a-gd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
.|+-|++... |.+. . ++...-++.+.+.++.+.+.++.+ ..+++.|+.|.| ..|..
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~Fca 127 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCS 127 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceec
Confidence 3666666653 3332 1 333345899999999999999864 567888888977 56644
No 238
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=33.03 E-value=32 Score=31.89 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCHHHHHHHH-HHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 110 IDPKITMAIA-REVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 110 iD~~~l~~iA-~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
+....+...| +.|+++++.| +|=||+||+|.+=-.-
T Consensus 76 ~t~~~F~~~a~~aie~I~~rg-k~PIv~GGs~~yi~al 112 (348)
T KOG1384|consen 76 YTAGEFEDDASRAIEEIHSRG-KLPIVVGGSNSYLQAL 112 (348)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-CCCEEeCCchhhHHHH
Confidence 4444555554 4678888887 7889999999875543
No 239
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=32.94 E-value=1e+02 Score=30.05 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=41.9
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA 147 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~ 147 (170)
-+++|++.+|++..++ .+..++..+.-++..|..-.||=|+|+-.-++..
T Consensus 94 ~q~fvV~~~g~~~~t~--------~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~ 143 (520)
T KOG2436|consen 94 DQKFVVIKSGEAISTS--------LLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLA 143 (520)
T ss_pred CceEEEEecccccccc--------hHHHHHHHHHHHhcCCceEEEecCccHHHHHHHH
Confidence 5678999999998765 3677889999999999999999999998766443
No 240
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.69 E-value=1.3e+02 Score=21.14 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.3
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.+.|+|-+++=-. +|..-+..+...++++.+.|.++.++==-+++.+=
T Consensus 39 ~~~vilDls~v~~-------iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 39 IKHLILNLKNVTF-------MDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRL 86 (106)
T ss_pred CCEEEEECCCCcE-------ecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 5789999888654 57777888888888888899998866434444443
No 241
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=32.66 E-value=78 Score=23.57 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCch
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS 156 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidra 156 (170)
.+.+.|+.+.+.|++++||.||=..+=...+ +.+|++..
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~ 115 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDV 115 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchh
Confidence 3455667777889999999887554333333 34677643
No 242
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=32.52 E-value=46 Score=31.88 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
..+.+.|+++.+.||+|+||.--+.+.||+.
T Consensus 200 pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~ 230 (526)
T TIGR01663 200 PEIPEKLKELEADGFKICIFTNQGGIARGKI 230 (526)
T ss_pred cCHHHHHHHHHHCCCEEEEEECCcccccCcc
Confidence 4588999999999999999999999999863
No 243
>PRK10628 LigB family dioxygenase; Provisional
Probab=32.49 E-value=62 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.422 Sum_probs=31.7
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
||-|| +.. +.|++.--++.+.|+.+.++| ++|||.|++.=.
T Consensus 113 VvqlS---l~~----~~~~~~h~~lG~aL~~LR~~g---vLIigSG~~~HN 153 (246)
T PRK10628 113 MVQLS---IDS----TKPAAWHFEMGRKLAALRDEG---IMLVASGNVVHN 153 (246)
T ss_pred eEEee---cCC----CCCHHHHHHHHHHHHhhccCC---EEEEecCccccc
Confidence 77777 332 358999999999999999987 468899987544
No 244
>PRK13775 formimidoylglutamase; Provisional
Probab=32.04 E-value=67 Score=28.28 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+..+++++.++++.+.| .+-||+||+.
T Consensus 106 ~~~~~~l~~~v~~~~~~g-~~PivlGGdH 133 (328)
T PRK13775 106 EQLQNSLSKAIKRMCDLN-LKPIVLGGGH 133 (328)
T ss_pred HHHHHHHHHHHHHHHhCC-CeEEEEcCcH
Confidence 556799999999999987 5678899983
No 245
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=31.89 E-value=57 Score=25.72 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..+.+.|+.|.+.|++++||.-.+.++|+
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~g~~~~ 60 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQDGLGTP 60 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCccccCC
Confidence 55778899999999999999988777665
No 246
>PRK10717 cysteine synthase A; Provisional
Probab=31.89 E-value=1.7e+02 Score=25.27 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=35.2
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc----EEEEEEcCChhhhhhh-hhhcCCCC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv----qIAIVVGGGNI~RG~~-~Ar~lGid 154 (170)
+|.+|+-+ +.+.. .+. .+.....|..+.+.|. +..|...+||..+... +|+.+|++
T Consensus 29 ~i~~K~E~--~nptG--S~K---~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~ 89 (330)
T PRK10717 29 EILGKAEF--LNPGG--SVK---DRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYK 89 (330)
T ss_pred eEEEEeec--cCCCC--Cch---HHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCc
Confidence 79999944 44321 232 3444455666666665 5567789999999964 44556653
No 247
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=31.67 E-value=1e+02 Score=24.88 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
|+||+==-|-.|++|+++| -++|++|++....-..|-||-||
T Consensus 2 ~~ilIlG~GN~L~~DDG~G------v~vae~L~~~~~~~~~v~vid~G 43 (160)
T COG0680 2 MRILILGVGNILMGDDGFG------VRVAEKLKKRYKPPENVEVIDGG 43 (160)
T ss_pred CeEEEEeeCCcccccCccc------HHHHHHHHHhcCCCCCeEEEEcC
Confidence 5666666788899998666 45666666654321135555555
No 248
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=31.34 E-value=53 Score=26.82 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 118 IAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 118 iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
+++.++++.+.|++=..|.|||.++....
T Consensus 125 l~~~l~~L~~~g~~~vlveGG~~l~~~fl 153 (210)
T TIGR01508 125 LKKLLDILYDKGVRRLMVEGGGTLIWSLF 153 (210)
T ss_pred HHHHHHHHHHCCCCEEEEeeCHHHHHHHH
Confidence 34566667778998888999999998754
No 249
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=31.25 E-value=67 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 114 ITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 114 ~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
....+.+.|+.+.+.|++++|+.++..+.|
T Consensus 26 ~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~ 55 (132)
T TIGR01662 26 LYPEVPDALAELKEAGYKVVIVTNQSGIGR 55 (132)
T ss_pred eCCCHHHHHHHHHHCCCEEEEEECCccccc
Confidence 345566788888899999999999984443
No 250
>PLN02645 phosphoglycolate phosphatase
Probab=30.96 E-value=75 Score=27.33 Aligned_cols=59 Identities=14% Similarity=0.275 Sum_probs=43.8
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh--hhhcCCCC
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS--AAGNSGLD 154 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~--~Ar~lGid 154 (170)
+|+-|++-+-|=.+.++. .+....+.|+++.++|++++++.+.+.-.+... -.+++|++
T Consensus 27 ~~~~~~~D~DGtl~~~~~-------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDK-------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred hCCEEEEeCcCCeEeCCc-------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 489999999999987652 245557889999999999999999775544422 11457875
No 251
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=30.95 E-value=1e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=32.9
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGid 154 (170)
|++-|-|-.+..++ . .+..-.+.|+++.+.|++++++. |+..+... ..+++|++
T Consensus 2 i~~DlDGTll~~~~-~-----~~~~~~~~i~~l~~~g~~~~~~T--gR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHG-Y-----DWGPAKEVLERLQELGIPVIPCT--SKTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCC-c-----CchHHHHHHHHHHHCCCeEEEEc--CCCHHHHHHHHHHcCCC
Confidence 45566666664331 1 12234678888889999999996 44444432 44567764
No 252
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.76 E-value=66 Score=25.40 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEEEcCChh-----hhhh-hhhhcCCCCchhh
Q 030876 111 DPKITMAIAREVASVTRLGI-EVAIVVGGGNI-----FRGA-SAAGNSGLDRSSA 158 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~Gv-qIAIVVGGGNI-----~RG~-~~Ar~lGidrata 158 (170)
..+.++++.+++++ .|. .+-|+|||+-. |... ...+++|.++.+.
T Consensus 63 ~~~~~~~~~~~l~~---~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 63 GEIDCKGLREKCDE---AGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred CHHHHHHHHHHHHH---CCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 34456666666655 455 66666666532 2222 2346688877653
No 253
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=30.47 E-value=57 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 118 IAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 118 iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
+.+.++++.+.|++=.+|.|||.+++-..
T Consensus 130 l~~~l~~L~~~g~~~llveGG~~L~~~fl 158 (216)
T TIGR00227 130 LKKLMEILYEEGINSVMVEGGGTLNGSLL 158 (216)
T ss_pred HHHHHHHHHHcCCCEEEEeeCHHHHHHHH
Confidence 44566667777887677889999997754
No 254
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.30 E-value=86 Score=24.24 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=26.7
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAI 134 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAI 134 (170)
-++++|.|+-+.+..+ ...+.+.++.+.+.|++++|
T Consensus 115 ~~~l~iei~e~~~~~~---------~~~~~~~~~~l~~~G~~l~l 150 (240)
T cd01948 115 PRRLVLEITESALIDD---------LEEALATLRRLRALGVRIAL 150 (240)
T ss_pred HHHEEEEEecchhhCC---------HHHHHHHHHHHHHCCCeEEE
Confidence 3578898887766432 23566788888899999998
No 255
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=30.20 E-value=1e+02 Score=25.84 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=23.0
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
|||++...|.- |. ......+|+++ .+.||+|.+|.+++
T Consensus 2 ~~i~i~~~g~g--G~------~~~~~~la~~L---~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTG--GH------VFPALALAEEL---KKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcch--Hh------hhHHHHHHHHH---HhCCCEEEEEECCC
Confidence 67888776662 32 22333455444 45699998876654
No 256
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=29.99 E-value=79 Score=27.06 Aligned_cols=38 Identities=34% Similarity=0.338 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCc-----EEEEEEcCChhhhhhh
Q 030876 109 NIDPKITMAIAREVASVTRLGI-----EVAIVVGGGNIFRGAS 146 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~Gv-----qIAIVVGGGNI~RG~~ 146 (170)
.-|++..+-+|+.|-++.+... .++|-+|||=.+....
T Consensus 104 W~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~HYapr~t 146 (213)
T PF04414_consen 104 WNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGGHYAPRFT 146 (213)
T ss_dssp HT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S-TT-HHHH
T ss_pred hCChHHHHHHHHHHHHHhcccccccccceeEEecCcccchhhh
Confidence 5689999999999999987655 8999999999998753
No 257
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=29.92 E-value=76 Score=24.45 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
.+.+.|+.+.+.|++++||.++....-...+ +.+|+..
T Consensus 89 g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~ 126 (213)
T TIGR01449 89 GVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAK 126 (213)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHh
Confidence 4455667777889999999988653332222 2355543
No 258
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=29.88 E-value=63 Score=27.92 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 109 NIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
.++++.++.+-+.|+.+.++|+++++|.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~ 108 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVP 108 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEES
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3678999999999999999999999885
No 259
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=29.83 E-value=91 Score=28.84 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=32.8
Q ss_pred CcceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 88 ~kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+-|||||.+-=-+-. +++.-.|..+|+.-..-|+.+.++|.+|.|+.==|.
T Consensus 7 ~~gK~VlvRvD~NvPi-~~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~GR 58 (384)
T PF00162_consen 7 LKGKRVLVRVDFNVPI-KNGKITDDTRIRAALPTIKYLLEKGAKVVLMSHLGR 58 (384)
T ss_dssp -TTEEEEEEE-----E-ETTEES-THHHHHHHHHHHHHHHTTEEEEEE---SS
T ss_pred cCCCEEEEEeCCCCCc-CCCcCCCcchHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3678999988655444 223335778999999999999999999766643333
No 260
>PRK13774 formimidoylglutamase; Provisional
Probab=29.77 E-value=78 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+..+++++.++++.+.| .+-||+||+.
T Consensus 103 ~~~~~~i~~~v~~i~~~g-~~pivlGGdH 130 (311)
T PRK13774 103 IDTQKEFAMLAAKSIANH-RQTFLLGGGH 130 (311)
T ss_pred HHHHHHHHHHHHHHHHCC-CeEEEEcCch
Confidence 456788899999999987 5568999983
No 261
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.63 E-value=66 Score=27.55 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHh-------C--CcEEEEEEcCCh
Q 030876 116 MAIAREVASVTR-------L--GIEVAIVVGGGN 140 (170)
Q Consensus 116 ~~iA~eIkel~~-------~--GvqIAIVVGGGN 140 (170)
..+|++|.+... . +-+|.|++|.||
T Consensus 38 ~ava~~i~~~~~~~~~~~~~~~~~~V~VlcG~GN 71 (246)
T PLN03050 38 LSVAEAVYEVADGEKASNPPGRHPRVLLVCGPGN 71 (246)
T ss_pred HHHHHHHHHHhccccccCccCCCCeEEEEECCCC
Confidence 456677766552 2 358999999776
No 262
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=29.52 E-value=47 Score=30.43 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCcEEEEEEcCChh
Q 030876 119 AREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 119 A~eIkel~~~GvqIAIVVGGGNI 141 (170)
++.|+.|.+.| .+.|..|||.|
T Consensus 174 ~~~Ik~L~~~g-~vVI~~GGGGI 195 (312)
T COG0549 174 AEAIKALLESG-HVVIAAGGGGI 195 (312)
T ss_pred HHHHHHHHhCC-CEEEEeCCCCc
Confidence 47899999998 67888899865
No 263
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=29.44 E-value=1.2e+02 Score=25.83 Aligned_cols=46 Identities=7% Similarity=0.210 Sum_probs=34.0
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC--hhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG--NIFRG 144 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG--NI~RG 144 (170)
+|.|..+. ..-++.+.+.++.+.+.++.+ ..+++.|+.|+| ..|..
T Consensus 24 ~itlnr~~-----~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~Fca 72 (278)
T PLN03214 24 VVWLAKEP-----VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTA 72 (278)
T ss_pred EEEECCCC-----CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccC
Confidence 56666542 135899999999999999874 458988888976 45544
No 264
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=29.39 E-value=1.2e+02 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEE
Q 030876 111 DPKITMAIAREVASVTR-LGIEVAIVV 136 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~-~GvqIAIVV 136 (170)
+++...++-+.++++.+ .|+||+||+
T Consensus 3 s~~~~~~l~~~l~~~~~~t~~~i~Vvt 29 (119)
T PF04536_consen 3 SQEERERLNQALAKLEKKTGVQIVVVT 29 (119)
T ss_dssp -HHHHHHHHHHHHHHHHHC--EEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 44555666666666653 678998887
No 265
>PRK08238 hypothetical protein; Validated
Probab=29.12 E-value=94 Score=29.20 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCCHHHH---HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCC
Q 030876 109 NIDPKIT---MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 153 (170)
Q Consensus 109 giD~~~l---~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGi 153 (170)
.+|++.+ ....+.|+++.++|++++||.+.-...-.... +.+|+
T Consensus 65 ~~d~~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl 111 (479)
T PRK08238 65 DLDVATLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL 111 (479)
T ss_pred CCChhhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC
Confidence 4677655 57788889999999999999988766544443 34665
No 266
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=28.87 E-value=1.1e+02 Score=22.98 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhh
Q 030876 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~R 143 (170)
|++++.++.+.+.++++. +.+-+|-||.|-=.|-.
T Consensus 1 GYS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~DdIC~ 36 (103)
T PF06935_consen 1 GYSPEFVENMKKIVERLRNDPGEPIEIVDGPDDICA 36 (103)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECcCHHHH
Confidence 467888899988888886 56789999998765543
No 267
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=28.87 E-value=59 Score=24.37 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 120 REVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 120 ~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
+.|+++.+.|++|.||.|+-..+=.. +++.+|++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~-~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEP-IAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHH-HHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHH-HHHHcCCCc
Confidence 67777778999999999984433222 334577765
No 268
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=28.85 E-value=1.8e+02 Score=24.40 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=37.2
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc----EEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv----qIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
-+|.+|+-+.--.| .+ +.+.....|.++.+.|. +..|..-+||..|... .|+.+|+
T Consensus 17 ~~i~~K~E~~~ptg----S~---K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 77 (291)
T cd01561 17 AEIYAKLEFFNPGG----SV---KDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGY 77 (291)
T ss_pred CeEEEEecccCCCC----cc---hHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 37999998653322 22 34555666777777776 5567789999999964 4555665
No 269
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=28.78 E-value=97 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCChhhhh
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGGNI~RG 144 (170)
.-++.+.+.++.+.+.++. +..+++.|+.|.|..|.-
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~a 65 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCccc
Confidence 3589999999999999885 456899999999987754
No 270
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=28.59 E-value=1.5e+02 Score=22.50 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=29.9
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
++-|=|=.+..+ ..+++ +..+.|+++.+.|+.+++..|= -++.. ...++++++
T Consensus 2 ~~DlDGTLl~~~--~~i~~----~~~~al~~l~~~g~~~~i~TGR--~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 2 FSDLDGTLLNSD--GKISP----ETIEALKELQEKGIKLVIATGR--SYSSIKRLLKELGID 55 (254)
T ss_dssp EEECCTTTCSTT--SSSCH----HHHHHHHHHHHTTCEEEEECSS--THHHHHHHHHHTTHC
T ss_pred EEEECCceecCC--CeeCH----HHHHHHHhhcccceEEEEEccC--cccccccccccccch
Confidence 445556555422 23675 4446677788889998877653 33332 233445554
No 271
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.50 E-value=40 Score=22.79 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=11.4
Q ss_pred EEEEcCChhhhhhh
Q 030876 133 AIVVGGGNIFRGAS 146 (170)
Q Consensus 133 AIVVGGGNI~RG~~ 146 (170)
++|||||.+.-...
T Consensus 2 vvViGgG~ig~E~A 15 (80)
T PF00070_consen 2 VVVIGGGFIGIELA 15 (80)
T ss_dssp EEEESSSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 47899999988853
No 272
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.41 E-value=1.3e+02 Score=26.75 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..-+||+.+.++-+.++++++.|.-..||+===.+||.
T Consensus 164 TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 33589999999999999999999999999765555555
No 273
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=28.37 E-value=92 Score=24.22 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+.+.|+++.+.|++++||.++..
T Consensus 98 g~~~~L~~L~~~g~~~~i~Tn~~~ 121 (221)
T TIGR02253 98 GVRDTLMELRESGYRLGIITDGLP 121 (221)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCch
Confidence 345677788888999999999864
No 274
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=28.08 E-value=90 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~ 145 (170)
++.+|.+.++.+|+++.+....+.+||. ||-=.++...
T Consensus 4 QfwYs~~T~~~l~~~l~~~~~~~~~iac-lstPsl~~~l 41 (162)
T PF10237_consen 4 QFWYSDETAEFLARELLDGALDDTRIAC-LSTPSLYEAL 41 (162)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCEEEE-EeCcHHHHHH
Confidence 5678999999999999998877667775 4776666654
No 275
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=28.01 E-value=1.6e+02 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=29.0
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
|-|++-|-|=.|..+ ..+++ +..+.|+++.+.|+.++|+.|=
T Consensus 2 k~v~~DlDGTLl~~~--~~i~~----~~~~~i~~l~~~g~~~~~~TGR 43 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN--RMISE----RAIEAIRKAEKKGIPVSLVTGN 43 (215)
T ss_pred cEEEEecCCCcCCCC--cccCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 446777888877432 23454 4456788888899999888774
No 276
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.92 E-value=1e+02 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|-++.+.++.+.++|+.+.+.|.. +||+|-
T Consensus 64 dF~Ys~~E~~~M~~di~~~~~~Gad-GvV~G~ 94 (248)
T PRK11572 64 DFCYSDGEFAAMLEDIATVRELGFP-GLVTGV 94 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCC-EEEEee
Confidence 3668999999999999999999988 999985
No 277
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=27.75 E-value=90 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh
Q 030876 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (170)
Q Consensus 110 iD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~ 145 (170)
-+.+.+.++++++++ .+....|-||||...=-.
T Consensus 62 p~~~~v~~~~~~~~~---~~~d~IIaiGGGs~~D~a 94 (332)
T cd07766 62 PTFEEVKEAVERARA---AEVDAVIAVGGGSTLDTA 94 (332)
T ss_pred cCHHHHHHHHHHHHh---cCcCEEEEeCCchHHHHH
Confidence 356667777777766 467888999999876553
No 278
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=27.52 E-value=1.8e+02 Score=21.13 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIV 135 (170)
.+.|+|-++|=.+. |.--+..++..++.+...|.++.++
T Consensus 44 ~~~ivIDls~v~~~-------dS~gl~~L~~~~~~~~~~g~~~~l~ 82 (117)
T COG1366 44 ARGLVIDLSGVDFM-------DSAGLGVLVALLKSARLRGVELVLV 82 (117)
T ss_pred CcEEEEECCCCcee-------chHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45589999887664 5667889999999999999887766
No 279
>PRK13776 formimidoylglutamase; Provisional
Probab=27.50 E-value=89 Score=27.44 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCC-----hhhhhh
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGG-----NIFRGA 145 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGG-----NI~RG~ 145 (170)
.+..+++++.++++.+.| .+-||+||+ ..+||+
T Consensus 100 ~~~~~~i~~~v~~i~~~g-~~Pi~lGGdHsit~g~~~a~ 137 (318)
T PRK13776 100 EAAQSRYAQRVHDLLDRG-HLPIGLGGGHEIAWASFQGL 137 (318)
T ss_pred HHHHHHHHHHHHHHHhCC-CeEEEEcCchHHHHHhHHHH
Confidence 456788999999999987 556889998 455554
No 280
>PRK13772 formimidoylglutamase; Provisional
Probab=27.48 E-value=91 Score=27.28 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+.++++++.++++.+.| .+-||+||+.
T Consensus 99 ~~~~~~i~~~v~~~~~~g-~~PivlGGdH 126 (314)
T PRK13772 99 ESAQAALAEVVAEVLAAG-ARPLVLGGGH 126 (314)
T ss_pred HHHHHHHHHHHHHHHHCC-CEEEEEcCch
Confidence 456788999999999987 5678899994
No 281
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=27.45 E-value=78 Score=25.24 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.+.+.|+.+.+.|++++||.+|-..+=.
T Consensus 78 G~~e~l~~l~~~g~~~~IvS~~~~~~i~ 105 (219)
T PRK09552 78 GFHEFVQFVKENNIPFYVVSGGMDFFVY 105 (219)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcHHHHH
Confidence 4456677777899999999999765433
No 282
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=27.42 E-value=1.9e+02 Score=26.33 Aligned_cols=60 Identities=8% Similarity=0.105 Sum_probs=39.9
Q ss_pred ceEEEEEeecceecCCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCch
Q 030876 90 WQRVLLKVSGEALAGDHTQNI---DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS 156 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~gi---D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidra 156 (170)
++-|++-|-|-.+..++ .+ | ..+.+.|+++.+.|+++||+..|..-.-...+ +.+|+++-
T Consensus 128 ~~~i~~D~D~TL~~~~~--~v~ird----p~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~y 190 (303)
T PHA03398 128 PHVIVFDLDSTLITDEE--PVRIRD----PFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGY 190 (303)
T ss_pred ccEEEEecCCCccCCCC--ccccCC----hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCcc
Confidence 45688999999876432 22 3 34567888888999999999977433222233 34777643
No 283
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=27.37 E-value=83 Score=24.87 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
.+.+.|+.+.+.|++++||.++....=...+ +.+|++..+
T Consensus 96 g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f 135 (222)
T PRK10826 96 GVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYF 135 (222)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcc
Confidence 3556677777889999999987654333233 336655543
No 284
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.17 E-value=1.1e+02 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
...+.|+.+.+.|++++|+.++-.-.-...+ +.+|+..
T Consensus 96 ~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~ 133 (198)
T TIGR01428 96 DVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDD 133 (198)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChh
Confidence 3445677788889999999987644322233 2366543
No 285
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=27.15 E-value=79 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+..+.|+++.+.|++++||.|-.-
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~ 44 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSL 44 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCH
Confidence 3455778888899988888877553
No 286
>smart00463 SMR Small MutS-related domain.
Probab=26.56 E-value=1.5e+02 Score=20.30 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhCCc--EEEEEEcCChhhh
Q 030876 113 KITMAIAREVASVTRLGI--EVAIVVGGGNIFR 143 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~Gv--qIAIVVGGGNI~R 143 (170)
+.+..+-+.|.++.+.|. ++-||+|-|+=-.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~ 45 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGKHSL 45 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccCCCc
Confidence 456677778888888885 8999999886443
No 287
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=26.55 E-value=80 Score=23.78 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
..+.+.|+.+.+.|++++|+..+...
T Consensus 30 ~g~~~~l~~Lk~~g~~~~I~Sn~~~~ 55 (147)
T TIGR01656 30 PGAVPALLTLRAAGYTVVVVTNQSGI 55 (147)
T ss_pred CChHHHHHHHHHCCCEEEEEeCCCcc
Confidence 44567788888999999999987643
No 288
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=26.51 E-value=1.3e+02 Score=25.11 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 111 DPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
+.+.++++++.++++.+.| .+-||+||..
T Consensus 62 ~~~~~~~l~~~v~~~~~~g-~~pi~lGGdh 90 (277)
T PF00491_consen 62 NEQVFERLAEAVAEVLEAG-AFPIVLGGDH 90 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEESSG
T ss_pred HHHHHHHHHHHHHHhhcCC-CEEEecCCCc
Confidence 3457899999999999987 5667888885
No 289
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=26.41 E-value=1.2e+02 Score=22.57 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 113 KITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.....+.+.|+++.+.|++++|+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYN 54 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCC
Confidence 35678888888888999999999887
No 290
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=26.37 E-value=1.1e+02 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEE
Q 030876 113 KITMAIAREVASVTRLGIEVAI 134 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAI 134 (170)
..+.+..++++++.+.|++|+.
T Consensus 41 ~~~~~~~~~l~~l~~~G~ei~~ 62 (123)
T PF01522_consen 41 SWVERYPDQLRELAAAGHEIGN 62 (123)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccchhHHHHHHHHHh
Confidence 3466668899999999999874
No 291
>PRK08321 naphthoate synthase; Validated
Probab=26.33 E-value=1.1e+02 Score=26.38 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCC
Q 030876 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG 139 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~-~~GvqIAIVVGGG 139 (170)
..++++.+.++.+.+.++. +..+++.|+.|.|
T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g 79 (302)
T PRK08321 47 NAFRPHTVDELYRALDHARMSPDVGCVLLTGNG 79 (302)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 4589999999999999985 4567888888877
No 292
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=26.28 E-value=85 Score=24.27 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
..+.+.|+++.+.|++++||..+..+.|
T Consensus 32 pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~ 59 (181)
T PRK08942 32 PGSIEAIARLKQAGYRVVVATNQSGIAR 59 (181)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCccccC
Confidence 3456777888888999999998875543
No 293
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=26.19 E-value=77 Score=27.97 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCHHHH-HHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 110 IDPKIT-MAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 110 iD~~~l-~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
++.... ....+.|.++.+.| ++.|||||=+++=.
T Consensus 68 ~~v~~f~~~a~~~i~~~~~~g-~~pi~vGGTg~Yi~ 102 (287)
T TIGR00174 68 YSAADFQTLALNAIADITARG-KIPLLVGGTGLYLK 102 (287)
T ss_pred EcHHHHHHHHHHHHHHHHhCC-CCEEEEcCcHHHHH
Confidence 454334 44556677787876 67889998766433
No 294
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.18 E-value=77 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=31.6
Q ss_pred EeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 96 KVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 96 KLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
++-||--. -..+..+.+....+|.++.+....|.+||+|-
T Consensus 42 ~~~~eDwQ-lsqfwy~~eta~~La~e~v~~s~e~~rIacvS 81 (217)
T KOG3350|consen 42 EKIGEDWQ-LSQFWYSDETARKLAAERVEASGEGSRIACVS 81 (217)
T ss_pred hhcccchh-hhhhhcCHHHHHHHHHHHHhhcccCceEEEEe
Confidence 44444433 24578899999999999999999999999984
No 295
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=26.01 E-value=63 Score=28.38 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~ 146 (170)
.+++.+++|.+.|++-..|.|||.+++-..
T Consensus 260 dl~~~l~~L~~~g~~~ilveGG~~L~~~ll 289 (344)
T TIGR00326 260 TIREVMTQLGKRGINSVLVEGGPNLLGSFL 289 (344)
T ss_pred CHHHHHHHHHhCCCCEEEEeeHHHHHHHHH
Confidence 355677777778888888999999998754
No 296
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=25.93 E-value=83 Score=24.12 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASA 147 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~ 147 (170)
.++++||+.+.++|+.++|=-==-.-+|+..|
T Consensus 15 ~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW 46 (99)
T cd03527 15 EQIAKQIDYIISNGWAPCLEFTEPEHYDNRYW 46 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEEcccCCCCCCCEE
Confidence 67889999999999999986555555666544
No 297
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=25.70 E-value=1.2e+02 Score=21.05 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCcEEEEEEcCChhh
Q 030876 119 AREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 119 A~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
.+..+++.+.|++|.|++....-.
T Consensus 8 ~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 8 RELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHTT-EEEEEEE---GG
T ss_pred HHHHHHHHHCCCEEEEEecCCCCc
Confidence 344455667899999998655444
No 298
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=25.65 E-value=1.3e+02 Score=29.03 Aligned_cols=37 Identities=8% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCcEEEEEEcC-Chhhhh
Q 030876 108 QNIDPKITMAIAREVASVT--RLGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~--~~GvqIAIVVGG-GNI~RG 144 (170)
.-++++.+.++.+.++++. +..+++.|+.|+ |..|.-
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~Fca 86 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCS 86 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCC
Confidence 3589999999999999996 356888888885 466644
No 299
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.58 E-value=37 Score=27.96 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=20.6
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSADY 160 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataDy 160 (170)
+|+++|||.+|=...-++.++++...+.
T Consensus 86 ~I~~~GG~~~~~~~~l~~t~l~~~l~~~ 113 (217)
T cd03145 86 GIFFTGGDQLRITSALGGTPLLDALRKV 113 (217)
T ss_pred EEEEeCCcHHHHHHHHcCChHHHHHHHH
Confidence 7899999999997622456777766553
No 300
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=25.55 E-value=99 Score=30.58 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
.+..+.|+++.+.|+++.+|.|.-...-... |+++|+++..+
T Consensus 449 p~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-A~~lGI~~v~a 490 (675)
T TIGR01497 449 GGIKERFAQLRKMGIKTIMITGDNRLTAAAI-AAEAGVDDFIA 490 (675)
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-HHHcCCCEEEc
Confidence 5677888899999999988877655444444 56799986544
No 301
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=25.48 E-value=1.1e+02 Score=21.83 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
.+.+.|+++.+.|++++||.++-.-.-...+ +.+|+.
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~ 117 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLD 117 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHG
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccc-cccccc
Confidence 3456777787789999999888543322223 235554
No 302
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=25.44 E-value=85 Score=25.56 Aligned_cols=35 Identities=17% Similarity=0.490 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCChhhh
Q 030876 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFR 143 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~-~GvqIAIVVGGGNI~R 143 (170)
.+|.+.++++.+.|.++.+ ..+++.|.-|+|+.|.
T Consensus 21 ~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~ 56 (245)
T PF00378_consen 21 ALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFC 56 (245)
T ss_dssp EBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESB
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccc
Confidence 5899999999999999976 4467777778888876
No 303
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=25.34 E-value=1e+02 Score=26.55 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCC-----hhhhhh
Q 030876 113 KITMAIAREVASVTRLGIEVAIVVGGG-----NIFRGA 145 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAIVVGGG-----NI~RG~ 145 (170)
+..+++++.++++.+.| .+-||+||+ ..+|++
T Consensus 67 ~~~~~i~~~v~~~~~~g-~~pi~lGGdHsi~~~~~~a~ 103 (300)
T TIGR01229 67 AATEQLAPKVYEVFEEG-RFPLVLGGDHSIAIGTISGT 103 (300)
T ss_pred HHHHHHHHHHHHHHhCC-CeeEEEcCcchhhhhhHHHH
Confidence 34577788999998987 567889998 455554
No 304
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=25.33 E-value=3e+02 Score=20.71 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=25.1
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVA 133 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIA 133 (170)
..++|.+.+.++.......++++....+.+..+.+.....+|.
T Consensus 22 ~~~~i~l~~~~~F~~gs~~L~~~~~~~L~~ia~~l~~~~~~i~ 64 (137)
T TIGR03350 22 DRSVVRLRGDELFASGSAEVRADFEPLLDRIAKALAAVPGRIT 64 (137)
T ss_pred CEEEEEeCCCCccCCCccccCHHHHHHHHHHHHHHHhCCCeEE
Confidence 3678899999888766666776654444333333333323433
No 305
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.27 E-value=91 Score=27.49 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCcEEEEEEcCChhhhhhh--hhhcCCCCc
Q 030876 118 IAREVASVTRLGIEVAIVVGGGNIFRGAS--AAGNSGLDR 155 (170)
Q Consensus 118 iA~eIkel~~~GvqIAIVVGGGNI~RG~~--~Ar~lGidr 155 (170)
+-+-++.|++.|.+|.++-|| ||-.+ .|..+|++.
T Consensus 93 i~eLv~~L~~~~~~v~liSGG---F~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGG---FRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCC---hHHHHHHHHHHhCCcH
Confidence 334556677889999988887 55532 456788887
No 306
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=25.26 E-value=95 Score=25.10 Aligned_cols=53 Identities=25% Similarity=0.505 Sum_probs=32.3
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhh-hhhhcCCCC
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLD 154 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~-~~Ar~lGid 154 (170)
++-|-|=.|..+ ..++++ ..+.|+++.+.|++++|+.|-. ++.. ...+.+|++
T Consensus 3 ~~DlDGTLl~~~--~~i~~~----~~~~i~~l~~~G~~~~iaTGR~--~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 3 FIDLDGTLLNDD--HTISPS----TKEALAKLREKGIKVVLATGRP--YKEVKNILKELGLD 56 (256)
T ss_pred EEeCCCCCCCCC--CccCHH----HHHHHHHHHHCCCeEEEEeCCC--HHHHHHHHHHcCCC
Confidence 445556656432 235544 4567888899999999998765 3332 233456654
No 307
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=25.15 E-value=1e+02 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCc-EEEEEEcCChhh
Q 030876 116 MAIAREVASVTRLGI-EVAIVVGGGNIF 142 (170)
Q Consensus 116 ~~iA~eIkel~~~Gv-qIAIVVGGGNI~ 142 (170)
.++.++++++.+.|+ ++.+|.+|++..
T Consensus 65 eei~~~~~~~~~~g~~~~~l~~~g~~~~ 92 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFCLVASGRGPK 92 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEecCCCC
Confidence 456667777777787 567888777643
No 308
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=25.00 E-value=1e+02 Score=24.11 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
..+.+.|+.+.+.|++++||.++..-.=...+ +.+|+++
T Consensus 85 ~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~ 123 (214)
T PRK13288 85 ETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDE 123 (214)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChh
Confidence 44556777888889999999998743222222 2356654
No 309
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=24.97 E-value=1.3e+02 Score=25.28 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 114 ITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 114 ~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..+++|+.|++..+.|-+|+++.+|=..+=+
T Consensus 83 ~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iys 113 (241)
T PRK05990 83 FYDTSAEAVAAHLDAGRDVAVICEGDPFFYG 113 (241)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCcHHHh
Confidence 3478889999999999999999998776655
No 310
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=24.84 E-value=94 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASA 147 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~ 147 (170)
.+++++|+.+.++|+.++|=----.-+|+..|
T Consensus 14 ~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W 45 (99)
T PF00101_consen 14 EEIAKQVRYLLSQGWIIGIEHADPRRFRTSYW 45 (99)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-
T ss_pred HHHHHHHHhhhhcCceeeEEecCCCCCCCCEe
Confidence 67899999999999999997766666666554
No 311
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=24.65 E-value=1e+02 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+|-++.+.++.+.++|+.+.+.|.. ++|+|-
T Consensus 63 dF~Ys~~E~~~M~~dI~~~~~~Gad-G~VfG~ 93 (201)
T PF03932_consen 63 DFVYSDEEIEIMKEDIRMLRELGAD-GFVFGA 93 (201)
T ss_dssp -S---HHHHHHHHHHHHHHHHTT-S-EEEE--
T ss_pred CccCCHHHHHHHHHHHHHHHHcCCC-eeEEEe
Confidence 3568999999999999999999987 888884
No 312
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=24.63 E-value=1.4e+02 Score=26.37 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=30.4
Q ss_pred eecceecCCCCCCCCHHHHHHHHH------------HHHHHHhCCcEEEEEEcCCh
Q 030876 97 VSGEALAGDHTQNIDPKITMAIAR------------EVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 97 LSGEaLagd~~~giD~~~l~~iA~------------eIkel~~~GvqIAIVVGGGN 140 (170)
-+.+.+.+- +++.+.+.++.+ .+..+.+.|++++||-||=.
T Consensus 96 k~~~l~~~~---~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 96 KSHGLLVQQ---AFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred HHHHHHhcC---CCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 456666543 567777777764 67888899999999998854
No 313
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=24.62 E-value=2.4e+02 Score=23.83 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=35.7
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc----EEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv----qIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
.+|.+|+-+.--.| .+. .+.....|..+.+.|. +..|..-+||..+... .|+.+|+
T Consensus 21 ~~i~~K~E~~nptG----S~K---~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl 81 (298)
T TIGR01139 21 ANVFVKLEGRNPSG----SVK---DRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGY 81 (298)
T ss_pred ceEEEEEcccCCCC----cch---HHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCC
Confidence 47999997763222 222 3444455666666676 5567778999999964 5555665
No 314
>PLN02165 adenylate isopentenyltransferase
Probab=24.59 E-value=1e+02 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCHHHHH-HHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 110 IDPKITM-AIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 110 iD~~~l~-~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
++...+. ...+.|+++.+.| ++.|||||.+.+=
T Consensus 113 ~sv~~F~~~a~~~I~~i~~~~-~~PI~vGGTglYi 146 (334)
T PLN02165 113 LTASEFRSLASLSISEITSRQ-KLPIVAGGSNSFI 146 (334)
T ss_pred eeHHHHHHHHHHHHHHHHHCC-CcEEEECChHHHH
Confidence 4544444 4455667787775 7788999998543
No 315
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=24.57 E-value=1.4e+02 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=38.4
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
+|=+.|-.|... ...++.+..+.+.++++.+.|+.|.++.|-=-..++
T Consensus 43 ~vliAGDlFd~~---~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 43 FVLIAGDLFDTN---NPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred EEEEccccccCC---CCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhc
Confidence 566899988543 478999999999999999999999888775444444
No 316
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=24.53 E-value=2.5e+02 Score=22.47 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=29.1
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
+.|.|+..++...+...++++....+.+....+.+.......|+|
T Consensus 46 ~~i~l~~~v~F~~~sa~L~~~~~~~L~~ia~~l~~~~~~~v~I~G 90 (160)
T PRK09967 46 WSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDG 90 (160)
T ss_pred eEEEcCCceeeCCCccccCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 467888999887666678877766666655555554433344555
No 317
>PRK03995 hypothetical protein; Provisional
Probab=24.50 E-value=1.1e+02 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh----CCcEEEEEEcCChhhhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR----LGIEVAIVVGGGNIFRGAS 146 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~----~GvqIAIVVGGGNI~RG~~ 146 (170)
..-|++..+-+|+.|-++.+ ....++|-+|||-.+....
T Consensus 155 eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGgHYapr~T 197 (267)
T PRK03995 155 EWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGGHYAPKFT 197 (267)
T ss_pred HhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCCCccHHHH
Confidence 45688999999999999954 6678999999999998753
No 318
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=24.49 E-value=1e+02 Score=29.30 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
...++++|+++++..++|-+|++|.|
T Consensus 184 ~~~~~~ia~~lr~~r~~gG~Iv~V~G 209 (407)
T TIGR00300 184 ETLIEQIAWEMYEIRDKGGKIGVVAG 209 (407)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 34689999999999998889888866
No 319
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=24.49 E-value=93 Score=23.15 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG~ 145 (170)
.++++||+.+.++|+.+++=-=-=|-|+-.
T Consensus 2 ~~i~~QI~yll~qG~~~~iE~~d~~rywt~ 31 (84)
T cd00307 2 EDVVEQVRQLLAQGYKIGLEHADARRFRTS 31 (84)
T ss_pred HHHHHHHHHHHHCCCEeEEEECCCCccHhh
Confidence 368899999999999999855444444443
No 320
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=24.38 E-value=1e+02 Score=25.23 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 114 ITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 114 ~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
......++|+.+.+.|.+|.+-|||...-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~ 77 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLG 77 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence 45677889999999999999999997653
No 321
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=24.34 E-value=1.7e+02 Score=21.27 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIV 135 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIV 135 (170)
+..++|+..+++++.|+++.+.++||.|.
T Consensus 267 E~~LHp~~q~~l~~~l~~~~~~~~Qviit 295 (303)
T PF13304_consen 267 ENHLHPSWQRKLIELLKELSKKNIQVIIT 295 (303)
T ss_dssp STTSSHHHHHHHHHHHHHTGGGSSEEEEE
T ss_pred cCCCCHHHHHHHHHHHHhhCccCCEEEEe
Confidence 45799999999999999988767898664
No 322
>PLN02840 tRNA dimethylallyltransferase
Probab=24.29 E-value=84 Score=29.50 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCHHHH-HHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 110 IDPKIT-MAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 110 iD~~~l-~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
++...+ +...+.|+++.+.| ++-|||||=.++
T Consensus 90 ySv~~F~~~A~~~I~~i~~rg-kiPIvVGGTGlY 122 (421)
T PLN02840 90 YSVGAFFDDARRATQDILNRG-RVPIVAGGTGLY 122 (421)
T ss_pred eeHHHHHHHHHHHHHHHHhcC-CCEEEEcCccHH
Confidence 554444 44455677787876 888899885543
No 323
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=24.20 E-value=1.1e+02 Score=28.14 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 113 KITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
+.-+++|.++.++.++| ++++|+||-
T Consensus 86 ~atrqla~~v~~vve~~-r~~l~lGGD 111 (318)
T KOG2965|consen 86 NATRQLANEVSQVVENG-RILLVLGGD 111 (318)
T ss_pred HHHHHHHHHHHHHHhcC-eEEEEecCc
Confidence 46788999999999986 889999984
No 324
>PRK01722 formimidoylglutamase; Provisional
Probab=24.20 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
.+..+++++.++++.+.| .+-||+||+
T Consensus 100 ~~~~~~i~~~v~~~~~~g-~~pi~lGGd 126 (320)
T PRK01722 100 EEAQQALADTVGHCLRPN-MRTIVLGGG 126 (320)
T ss_pred HHHHHHHHHHHHHHHhCC-CeeEEEcCc
Confidence 446688899999998887 556889998
No 325
>PLN02423 phosphomannomutase
Probab=24.12 E-value=2.1e+02 Score=23.74 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=30.7
Q ss_pred cceEEE-EEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 89 KWQRVL-LKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 89 kykRVL-LKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
|+++++ +-|=|=.|..++ .++++. .+.|+++.+. +++++..|-
T Consensus 5 ~~~~i~~~D~DGTLl~~~~--~i~~~~----~~ai~~l~~~-i~fviaTGR 48 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRK--EATPEM----LEFMKELRKV-VTVGVVGGS 48 (245)
T ss_pred ccceEEEEeccCCCcCCCC--cCCHHH----HHHHHHHHhC-CEEEEECCc
Confidence 578888 999999996543 467544 4567777765 888877763
No 326
>PTZ00346 histone deacetylase; Provisional
Probab=24.11 E-value=1.4e+02 Score=28.36 Aligned_cols=51 Identities=27% Similarity=0.422 Sum_probs=34.1
Q ss_pred eEEEEEeecceecCCCC--CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC----hhhhh
Q 030876 91 QRVLLKVSGEALAGDHT--QNIDPKITMAIAREVASVTRLGIEVAIVVGGG----NIFRG 144 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~--~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG----NI~RG 144 (170)
.-||+..+--++.+|.- .++.++-..++.+.++ +.+..+++|.||| |++|.
T Consensus 270 dlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~---~~~~plv~vleGGY~~~~lar~ 326 (429)
T PTZ00346 270 DAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVR---DLGIPMLALGGGGYTIRNVAKL 326 (429)
T ss_pred CEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHH---hcCCCEEEEeCCcCCccHHHHH
Confidence 34788888888887753 3455555555555554 5577999998888 45555
No 327
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.08 E-value=83 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
...++++|+++.+. +.+.|+.||
T Consensus 45 ~~~i~~~i~~~~~~-~DlvittGG 67 (133)
T cd00758 45 ADSIRAALIEASRE-ADLVLTTGG 67 (133)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCC
Confidence 35566777777775 898888866
No 328
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=24.04 E-value=2e+02 Score=21.32 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.2
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRL 128 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~ 128 (170)
+|-+.+.|+.+. +.+.-+|...++++.++|.+..+.
T Consensus 30 ~v~v~v~g~~~~-~~g~v~DF~~lk~~~~~i~~~lDh 65 (123)
T PF01242_consen 30 RVEVEVEGEELD-EDGMVVDFGDLKKIIKEIDDQLDH 65 (123)
T ss_dssp EEEEEEEEESST-TTSSSS-HHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEeeCC-CCCEEEEHHHHHHHHHHHHHHhCc
Confidence 688999999864 456678999999999988887663
No 329
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=24.00 E-value=88 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCcEEEEEEcC
Q 030876 117 AIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGG 138 (170)
.+.+.|+.+.+.|++++||.++
T Consensus 92 g~~~~l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 92 GIENFLKRLKKKGIAVGLGSSS 113 (185)
T ss_pred CHHHHHHHHHHcCCeEEEEeCc
Confidence 3455667777889999999987
No 330
>PRK13773 formimidoylglutamase; Provisional
Probab=23.97 E-value=1.1e+02 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCC-----hhhhhh
Q 030876 113 KITMAIAREVASVTRLGIEVAIVVGGG-----NIFRGA 145 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAIVVGGG-----NI~RG~ 145 (170)
+..+++++.++++.+.| .+-||+||+ ..+||+
T Consensus 103 ~~~~~i~~~v~~~~~~g-~~PivLGGdHsit~g~~~a~ 139 (324)
T PRK13773 103 AGQERLGDAVSALLDAG-HLPVVLGGGHETAFGSYLGV 139 (324)
T ss_pred HHHHHHHHHHHHHHHCC-CeeEEECCchHHHHHhHHHH
Confidence 45788999999999987 667899999 455554
No 331
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=23.93 E-value=3.4e+02 Score=22.09 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=41.7
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhhe
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYF 164 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGML 164 (170)
+-+-|||.+. . .|-|...+.++.+.|+.+.+.+..|...+-|-..-.||.+| ...|+..++..+++
T Consensus 38 ~v~~ivL~~~----s----~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la--~~aD~i~a~~~a~~ 103 (211)
T cd07019 38 KVKAIVLRVN----S----PGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWIS--TPANYIVANPSTLT 103 (211)
T ss_pred CceEEEEEEc----C----CCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHH--HhCCEEEEcCCCEE
Confidence 5677888732 2 24577778888888888887776666555544455677654 23566555544443
No 332
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.93 E-value=1.4e+02 Score=24.69 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=37.9
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGid 154 (170)
++-|++-|=|=.|..++ .+.+ +..+.|+++.+.|++++|..|=.- +... ..+++|++
T Consensus 7 ~~lI~~DlDGTLL~~~~--~i~~----~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~~~~l~~~ 64 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHT--YDWQ----PAAPWLTRLREAQVPVILCSSKTA--AEMLPLQQTLGLQ 64 (271)
T ss_pred CeEEEEeCccCCcCCCC--cCcH----HHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHhCCC
Confidence 67788999999886432 2322 334668888899999998887543 3322 33567764
No 333
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=23.92 E-value=1.1e+02 Score=25.18 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCc
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidr 155 (170)
.+.+.|+.+.+.|++++||.++..-.=...+. .+|+.+
T Consensus 112 gv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~-~~gl~~ 149 (248)
T PLN02770 112 GLYKLKKWIEDRGLKRAAVTNAPRENAELMIS-LLGLSD 149 (248)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH-HcCChh
Confidence 35666777888899999999986543333332 356654
No 334
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=23.69 E-value=1e+02 Score=24.03 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
.+.+.|+.+.+.|++++||.++-.-.--..+. .+|+.
T Consensus 91 G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~-~~~l~ 127 (220)
T TIGR03351 91 GAEEAFRSLRSSGIKVALTTGFDRDTAERLLE-KLGWT 127 (220)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH-Hhhhh
Confidence 35567788888899999999887543333332 24544
No 335
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=23.60 E-value=81 Score=29.23 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhheeeeec
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFLLILI 169 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLATvi~ 169 (170)
...||.+.++++|++.+- . .||+|+-+.-|-..+.+ + |..||..| |-+|.
T Consensus 153 ~~~ID~d~l~~~a~~~kP---k----lIi~G~S~y~~~~d~~~-~---reIad~vg--a~l~~ 202 (399)
T PF00464_consen 153 TGLIDYDELEKLAKEHKP---K----LIICGASSYPRPIDFKR-F---REIADEVG--AYLMA 202 (399)
T ss_dssp TSSB-HHHHHHHHHHH-----S----EEEEE-SSTSS---HHH-H---HHHHHHTT---EEEE
T ss_pred CCeECHHHHHHHHhhcCC---C----EEEECchhccCccCHHH-H---HHHHHhcC--cEEEe
Confidence 456998888888777653 2 57888888888876643 3 66788887 44443
No 336
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=23.55 E-value=48 Score=25.18 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=9.0
Q ss_pred EEEEEcCChhhhhh
Q 030876 132 VAIVVGGGNIFRGA 145 (170)
Q Consensus 132 IAIVVGGGNI~RG~ 145 (170)
=++|||||+.+-..
T Consensus 169 ~V~VVG~G~SA~d~ 182 (203)
T PF13738_consen 169 RVVVVGGGNSAVDI 182 (203)
T ss_dssp EEEEE--SHHHHHH
T ss_pred cEEEEcChHHHHHH
Confidence 35588999998874
No 337
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.40 E-value=1.7e+02 Score=22.77 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
.+-|++-+-|-....+.. +....+.+.|+++.+.|++++|+.++-
T Consensus 25 v~~vv~D~Dgtl~~~~~~-----~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 25 IKGVVLDKDNTLVYPDHN-----EAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred CCEEEEecCCccccCCCC-----CcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 666888887776654321 234556678888888999999999875
No 338
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.31 E-value=55 Score=22.28 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.+..+++.+.+.|+..+||||.=..-.|
T Consensus 42 ~l~k~i~~a~~~g~~~~iiiG~~e~~~~ 69 (94)
T cd00861 42 RPGVKFADADLIGIPYRIVVGKKSAAEG 69 (94)
T ss_pred CcccchhHHHhcCCCEEEEECCchhhCC
Confidence 4567788888899999999996555444
No 339
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=23.29 E-value=99 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=34.3
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHH------hCCcEEEEEEcCCh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVT------RLGIEVAIVVGGGN 140 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~------~~GvqIAIVVGGGN 140 (170)
.-|+|-+|..-+++| +.|.++..-.+.+..+. +.+-||+||+=+|+
T Consensus 6 ~vi~lD~S~sM~a~D----~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~ 57 (187)
T cd01452 6 TMICIDNSEYMRNGD----YPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGN 57 (187)
T ss_pred EEEEEECCHHHHcCC----CCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCC
Confidence 347889999988876 67878887777777552 23459999997773
No 340
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=23.24 E-value=1e+02 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=23.8
Q ss_pred EEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 95 LKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 95 LKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
+-|=|=.|..+ ..++++ ..+.|+++.+.|++++++.|
T Consensus 3 ~DlDGTLl~~~--~~i~~~----~~~al~~l~~~Gi~~~~aTG 39 (225)
T TIGR01482 3 SDIDGTLTDPN--RAINES----ALEAIRKAESVGIPVVLVTG 39 (225)
T ss_pred EeccCccCCCC--cccCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 34445555322 124443 34668888899999999988
No 341
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=23.22 E-value=1.3e+02 Score=25.17 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=40.1
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh-h-hhhhcCCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-A-SAAGNSGLD 154 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG-~-~~Ar~lGid 154 (170)
|-|++-+-|=.+.+++.. ...+..-.+.|+++.++|+++++|.|....-|. + ...+++|++
T Consensus 2 k~i~~D~DGtl~~~~~~~---~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS---GVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcc---cCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 346777777777654210 013456678888899999999999987776654 2 222457876
No 342
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=23.21 E-value=1.1e+02 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
....+.|+.+.+.|++++|+.++-..
T Consensus 78 ~g~~~~L~~L~~~g~~~~i~Sn~~~~ 103 (205)
T TIGR01454 78 PGVPELLAELRADGVGTAIATGKSGP 103 (205)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 34556677788889999999987544
No 343
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=23.21 E-value=1.1e+02 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
..+.+.++.+.+.|++++||.++..-.
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~ 93 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRA 93 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHH
Confidence 346677777778899999999887443
No 344
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=23.17 E-value=3.7e+02 Score=21.02 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=38.8
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADY 160 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDy 160 (170)
+-+-|||++.. .+-|.....++.+.++++.+.+..|...|.|.-.-.|+.+| +-.|...+..
T Consensus 39 ~v~~vvl~~~~--------~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la--~a~D~i~a~~ 100 (177)
T cd07014 39 KVKAIVLRVNS--------PGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWIS--TPANYIVANP 100 (177)
T ss_pred CceEEEEEeeC--------CCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHH--HhCCEEEECC
Confidence 46778998731 13466667778788888877766666666666666666654 2345444443
No 345
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.15 E-value=1.2e+02 Score=23.38 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=27.9
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE-EcCChh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNI 141 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIV-VGGGNI 141 (170)
+|++|-|+-..+..+ .....+.++.+.+.|++++|= +|.|..
T Consensus 117 ~~lvlei~e~~~~~~---------~~~~~~~i~~l~~~G~~ialddfg~~~~ 159 (241)
T smart00052 117 QRLELEITESVLLDD---------DESAVATLQRLRELGVRIALDDFGTGYS 159 (241)
T ss_pred HHEEEEEeChhhhcC---------hHHHHHHHHHHHHCCCEEEEeCCCCcHH
Confidence 478888876544322 233447788888999999984 566643
No 346
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=23.13 E-value=1.5e+02 Score=24.24 Aligned_cols=37 Identities=14% Similarity=-0.038 Sum_probs=25.1
Q ss_pred HHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhh
Q 030876 120 REVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (170)
Q Consensus 120 ~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrata 158 (170)
+.|+.+.+.| +++||-||-..+=... ++.+|++...+
T Consensus 75 ell~~lk~~~-~~~IVS~~~~~~~~~i-l~~lgi~~~~a 111 (203)
T TIGR02137 75 EFVDWLRERF-QVVILSDTFYEFSQPL-MRQLGFPTLLC 111 (203)
T ss_pred HHHHHHHhCC-eEEEEeCChHHHHHHH-HHHcCCchhhc
Confidence 3455555554 9999999877655544 45689987665
No 347
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=23.13 E-value=90 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 113 KITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+.+..+.++|+++.+.|+.|-+++=|
T Consensus 33 ~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 33 EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 35788999999999999999999988
No 348
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=23.10 E-value=1.1e+02 Score=24.11 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
...++.++++.++|++++++.|=.--+.
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~ 57 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQA 57 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHH
Confidence 5566788888899999999988664443
No 349
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=23.05 E-value=1.5e+02 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
.-++.+.+.++.+.+.++.+ ..+++.|+.|.| +.|..
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~a 63 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCA 63 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeC
Confidence 45899999999999998864 457888888977 77754
No 350
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.01 E-value=1.3e+02 Score=26.50 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=44.9
Q ss_pred EEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 95 LKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 95 LKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
|=|=|..+.+=.+...=++..+++|+.|+.+.++|+++.-|.|---.+=|.-.+++.|..+-.-|
T Consensus 33 lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll~~~f~~~~g~~~l~~~ 97 (237)
T COG2908 33 LYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFLLGKRFAQEAGGMTLLPD 97 (237)
T ss_pred EEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHhhcCceEEcCc
Confidence 34557766543322233678899999999999999999999998877766543445674333333
No 351
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.86 E-value=1.6e+02 Score=24.17 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
....+..+.+.++||+|-||.+..
T Consensus 14 ~~~~~la~~l~~~G~ev~v~~~~~ 37 (350)
T cd03785 14 FPALALAEELRERGAEVLFLGTKR 37 (350)
T ss_pred hHHHHHHHHHHhCCCEEEEEECCC
Confidence 333344555667799999887654
No 352
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=22.85 E-value=1.1e+02 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=26.6
Q ss_pred EEEEeecceecCCCC----CCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 030876 93 VLLKVSGEALAGDHT----QNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (170)
Q Consensus 93 VLLKLSGEaLagd~~----~giD~~~l~~iA~eIkel~~~GvqIAIVVG 137 (170)
.|=|+.|.-+-=|.. .-++. ..+...+..+.+.|++|.||.|
T Consensus 112 ~iRki~~~wyNLDS~l~~P~~i~~---~~l~~fL~~l~~~g~~ifvV~~ 157 (157)
T PF02099_consen 112 AIRKIGGQWYNLDSKLKEPELISD---FYLSAFLQQLQSEGYSIFVVRG 157 (157)
T ss_dssp EEEEETTEEEEECTTTSS-EEE-H---HHHHHHHHHHHCCTEEEEEEES
T ss_pred EEEeeCCeeEeccCCCCCCcccCH---HHHHHHHHHHHhCCcEEEEEeC
Confidence 456777765532221 12443 3466677778889999999987
No 353
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.83 E-value=1.9e+02 Score=22.69 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=33.0
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
|+.-|=|=.|..++ .+ +....+.|+++.+.|++++++.|--..+=. ...+.+|++
T Consensus 2 i~~DlDGTLL~~~~--~~----~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~-~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHS--YD----WQPAAPWLTRLQEAGIPVILCTSKTAAEVE-YLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCC--CC----cHHHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCC
Confidence 45556666664331 11 222347888888899999999876554322 233557765
No 354
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=22.71 E-value=2.7e+02 Score=23.66 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=36.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc----EEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv----qIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
.+|.+|+-+---.| .+. .+.....|..+.+.|. +..|....||..+... .|+.+|+
T Consensus 22 ~~i~~K~E~~~ptG----S~K---~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~ 82 (299)
T TIGR01136 22 ARVLAKLEGRNPSG----SVK---DRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGY 82 (299)
T ss_pred ceEEEEEcccCCCC----Ccc---HHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 48999997753222 233 3444455666666676 6678889999999964 5555665
No 355
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.69 E-value=1.6e+02 Score=24.11 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=13.0
Q ss_pred HHHHHHHhCCcEEEEEEc
Q 030876 120 REVASVTRLGIEVAIVVG 137 (170)
Q Consensus 120 ~eIkel~~~GvqIAIVVG 137 (170)
..++++.+.||||.+|.+
T Consensus 19 ~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 19 AVAEELIKRGVEVLWLGT 36 (348)
T ss_pred HHHHHHHhCCCEEEEEeC
Confidence 455556677999998854
No 356
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=22.67 E-value=94 Score=24.76 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..+.+.|+.+.+.|++++||.||-..+-.
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~ 101 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVY 101 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHH
Confidence 34556777788889999999999654443
No 357
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=22.63 E-value=1.6e+02 Score=24.04 Aligned_cols=38 Identities=32% Similarity=0.574 Sum_probs=25.5
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
|||++-+.|+ | .| ...+...+|++| + |++|.++++|-.
T Consensus 1 MkIl~~v~~~---G---~G-H~~R~~~la~~L----r-g~~v~~~~~~~~ 38 (318)
T PF13528_consen 1 MKILFYVQGH---G---LG-HASRCLALARAL----R-GHEVTFITSGPA 38 (318)
T ss_pred CEEEEEeCCC---C---cC-HHHHHHHHHHHH----c-cCceEEEEcCCc
Confidence 6899999886 2 23 344555555555 3 799999888743
No 358
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=22.55 E-value=1.2e+02 Score=27.33 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-hCCcEEEEEEcCChhhhhhhhhhcCCCCchh-hhhhh
Q 030876 116 MAIAREVASVT-RLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-ADYIG 162 (170)
Q Consensus 116 ~~iA~eIkel~-~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat-aDyIG 162 (170)
..+++.|+.+. +.|+.. +|.||.--+=...+|+++|+++.. .++++
T Consensus 263 ~~m~~ai~~v~~~~G~Dp-v~~gGaG~~~a~~lA~~lg~~~v~~~~~~~ 310 (318)
T TIGR03123 263 EQLTEAIEEVLERYGLKT-VVAAGAGEFLAKEAAARLGRECIDVDERLG 310 (318)
T ss_pred HHHHHHHHHHHHHcCCCC-eEEecchHHHHHHHHHHcCCCeecHHHHhc
Confidence 33444554443 578887 555554444444566779987544 44444
No 359
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.52 E-value=1.9e+02 Score=19.99 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
..+.|++-+++-.. +|..-+..+.+.++++.+.|.++.++-=-..+.|=
T Consensus 42 ~~~~vvidls~v~~-------iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 42 GPRPIVLDLEDLEF-------MDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRVARL 90 (108)
T ss_pred CCCeEEEECCCCeE-------EccccHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 36778998887654 45556777777777777788887766434444443
No 360
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=22.46 E-value=67 Score=26.64 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+.|++.+-|+.+++.+++. |++|.||.
T Consensus 8 DDGi~a~Gi~aL~~~L~~~---g~~V~VvA 34 (196)
T PF01975_consen 8 DDGIDAPGIRALAKALSAL---GHDVVVVA 34 (196)
T ss_dssp SS-TTSHHHHHHHHHHTTT---SSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhc---CCeEEEEe
Confidence 3588998999999988544 89999996
No 361
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=22.38 E-value=1.3e+02 Score=26.07 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
.+..+++++.++++.+.| .+-||+||+.
T Consensus 94 ~~~~~~i~~~v~~~~~~g-~~Pi~lGGdH 121 (307)
T TIGR01227 94 EDTQHEIAQTAAALLADH-RVPVILGGGH 121 (307)
T ss_pred HHHHHHHHHHHHHHHhcC-CeEEEECCcc
Confidence 446788899999999987 5668899983
No 362
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=22.36 E-value=1.3e+02 Score=28.28 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=37.4
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
+.-+.+-..|+.+. - +.+..+.-....+.|+++.+.|++++|+.|.-...-. ..++.+|++
T Consensus 385 ~~~~~~~~~~~~~g-~--~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~-~ia~~lgi~ 445 (562)
T TIGR01511 385 STSVLVAVNGELAG-V--FALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAK-AVAKELGIN 445 (562)
T ss_pred CEEEEEEECCEEEE-E--EEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHH-HHHHHcCCc
Confidence 34455655665432 1 1233344566777888999999999988877543333 344568885
No 363
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=22.25 E-value=1.1e+02 Score=25.81 Aligned_cols=27 Identities=7% Similarity=0.077 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 109 NIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
....+...++++.| .+.|++|.+..||
T Consensus 193 ~Wp~e~~a~li~~l---~~~~~~ivl~~G~ 219 (322)
T PRK10964 193 HWPEAHWRELIGLL---APSGLRIKLPWGA 219 (322)
T ss_pred cCCHHHHHHHHHHH---HHCCCeEEEeCCC
Confidence 35655555555555 4568886533344
No 364
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.18 E-value=1.1e+02 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCC
Q 030876 116 MAIAREVASVTRLGIEVAIVVGGG 139 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGGG 139 (170)
+.+..+++.+.+.|+.++|+||.=
T Consensus 38 ~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 38 EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred CCHHHHHHHHHHcCCCEEEEECcc
Confidence 356677888888999999999943
No 365
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=22.03 E-value=1.1e+02 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhh
Q 030876 111 DPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~R 143 (170)
+.+.++++++++++.--....+.|.||||.+.=
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D 95 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGD 95 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHH
Confidence 455677776666654211237899999997653
No 366
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=21.98 E-value=1.2e+02 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 111 DPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
-.++=..+|..|+++.+.+.+|.+|||.|-..
T Consensus 177 IdERD~ymA~~L~~l~~~~~~VvaVVGAGHl~ 208 (380)
T TIGR00261 177 IDERDEFMANKLLEGEGNKNIIVAVVGAGHVS 208 (380)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEECcchhh
Confidence 44566789999999887767999999999754
No 367
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.87 E-value=72 Score=30.05 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 111 DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
|++.+++.++.|++. -+.+||+|+|-.++|
T Consensus 198 ~~~~l~~a~~~L~~A----~rPvil~G~g~~~~~ 227 (595)
T PRK09107 198 DAEAITEAVELLANA----KRPVIYSGGGVINSG 227 (595)
T ss_pred CHHHHHHHHHHHHhC----CCcEEEECCcccccc
Confidence 666677777766653 468999999987665
No 368
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.77 E-value=3.3e+02 Score=22.81 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=31.4
Q ss_pred EEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 93 VLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
.||-.|-+. |-.++.+-+..++++.+.-+.+.+.|+.+-|+|.||=-..-.....+.|+|
T Consensus 131 ~vlvMtV~P--GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd 190 (220)
T PRK08883 131 LILLMSVNP--GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGAD 190 (220)
T ss_pred eEEEEEecC--CCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCC
Confidence 355566553 333334566666655443333334577777877777554443222245665
No 369
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.75 E-value=56 Score=28.01 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
.+.+|+++....++-|++|+++|.++.+.|
T Consensus 65 ~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 65 GYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred eeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 355788888888899999999999999876
No 370
>PLN03034 phosphoglycerate kinase; Provisional
Probab=21.65 E-value=2.4e+02 Score=27.22 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=37.2
Q ss_pred CCcceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 87 ~~kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+++=|||||.+-=-+-..+++.-.|..+|+...--|+.+.++|.+|.|+-
T Consensus 89 dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~S 138 (481)
T PLN03034 89 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSS 138 (481)
T ss_pred hcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEE
Confidence 34678999987654433222334588899999999999999999977764
No 371
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.65 E-value=51 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=19.9
Q ss_pred EEEEcCChhhhhhhhhhcCCCCchhhh
Q 030876 133 AIVVGGGNIFRGASAAGNSGLDRSSAD 159 (170)
Q Consensus 133 AIVVGGGNI~RG~~~Ar~lGidrataD 159 (170)
+|+++|||.||=...-++.++.+...+
T Consensus 85 ~I~~~GGnq~~l~~~l~~t~l~~~l~~ 111 (250)
T TIGR02069 85 GIFFTGGDQLRITSLLGDTPLLDRLRK 111 (250)
T ss_pred EEEEeCCCHHHHHHHHcCCcHHHHHHH
Confidence 789999999998752256777665543
No 372
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.64 E-value=2.5e+02 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 030876 108 QNIDPKITMAIAREVASVTRLGIEVAIV 135 (170)
Q Consensus 108 ~giD~~~l~~iA~eIkel~~~GvqIAIV 135 (170)
.++|++..+.+.+.|+++.+.|.-|.+|
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~ 183 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVIS 183 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4799999999999999998877665554
No 373
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.60 E-value=1.8e+02 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=27.1
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
+.|||||=++|..- .-+..+.++++.+.|++|-+|+
T Consensus 5 ~~k~IllgvTGsia------------a~k~~~lv~~L~~~g~~V~vv~ 40 (399)
T PRK05579 5 AGKRIVLGVSGGIA------------AYKALELVRRLRKAGADVRVVM 40 (399)
T ss_pred CCCeEEEEEeCHHH------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 46799999999863 2355666777777899998776
No 374
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=21.52 E-value=88 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
-+.|+|.....- .+ . ..-.+.|+++++.|--+.+|.|.|+++
T Consensus 44 ~itl~g~l~~~~--~~-~----~~~l~~Lr~~~~~g~p~~Lv~G~G~~~ 85 (121)
T PF06995_consen 44 TITLSGVLFPEF--GG-G----RKELDKLRAMAESGEPLPLVIGSGKVL 85 (121)
T ss_pred eEEEEEEEehHH--CC-C----HHHHHHHHHHHHcCCceEEEECCCcee
Confidence 458888876522 11 2 223357888889999999999999883
No 375
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=21.50 E-value=2.8e+02 Score=23.06 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=30.1
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGG 138 (170)
.+.+.+-|.--.+--...++.+.|+++|+.|+++.+.|-+|-|.+--
T Consensus 167 ~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 167 FAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp EEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred CeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 45677777743211123478899999999999999989999999864
No 376
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.31 E-value=71 Score=28.10 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcC-Chhhhh
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGG-GNIFRG 144 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGG-GNI~RG 144 (170)
..+|.++|+.+.+. +.+.|+.|| |.+.=.
T Consensus 47 ~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DD 76 (255)
T COG1058 47 PDRIVEALREASER-ADVVITTGGLGPTHDD 76 (255)
T ss_pred HHHHHHHHHHHHhC-CCEEEECCCcCCCccH
Confidence 57888999999998 999999998 666554
No 377
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=21.28 E-value=2.8e+02 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=32.4
Q ss_pred ceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEE
Q 030876 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIV 135 (170)
Q Consensus 90 ykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~G-vqIAIV 135 (170)
.+|+.|=|+|- ++.+.+|.+...+++++|.++.+.. .++.|.
T Consensus 146 ~p~~avLIGG~----s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vt 188 (311)
T PF06258_consen 146 RPRVAVLIGGD----SKHYRWDEEDAERLLDQLAALAAAYGGSLLVT 188 (311)
T ss_pred CCeEEEEECcC----CCCcccCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 57888889984 3567899999999999999998754 355544
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=2.1e+02 Score=25.63 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCCh
Q 030876 106 HTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (170)
Q Consensus 106 ~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGN 140 (170)
-+.|+|.+.++-+++.|.++.+.|.-+.|++==+.
T Consensus 171 ~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 171 PDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred CCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 35689999999999999999999888777764333
No 379
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=21.18 E-value=1.7e+02 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 110 iD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
-+.+.+.++++++++ +..+.|-+|||..
T Consensus 65 p~~~~v~~~~~~~~~----~~d~IIaiGGGsv 92 (332)
T cd08549 65 PDEYELGEVLIKLDK----DTEFLLGIGSGTI 92 (332)
T ss_pred CCHHHHHHHHHHhhc----CCCEEEEECCcHH
Confidence 466778888877766 5788888999964
No 380
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.14 E-value=1.1e+02 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCHHHHHHH-HHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 110 IDPKITMAI-AREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 110 iD~~~l~~i-A~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
++.....+. .+.|++++..| ++.|||||=..+=.
T Consensus 72 ~sv~~f~~~a~~~i~~i~~~g-k~PilvGGTglYi~ 106 (300)
T PRK14729 72 YNLGIFYKEALKIIKELRQQK-KIPIFVGGSAFYFK 106 (300)
T ss_pred eeHHHHHHHHHHHHHHHHHCC-CCEEEEeCchHHHH
Confidence 555445444 45566777776 77889998766544
No 381
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=21.03 E-value=1.9e+02 Score=26.80 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCC-hhhhh
Q 030876 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGG-NIFRG 144 (170)
Q Consensus 109 giD~~~l~~iA~eIkel~~-~GvqIAIVVGGG-NI~RG 144 (170)
.++.+.+.++.+.+.++.. ..+++.|+.|.| ..|..
T Consensus 51 Als~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCA 88 (360)
T TIGR03200 51 SYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCT 88 (360)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccC
Confidence 5899999999999999874 568999999988 45543
No 382
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=20.98 E-value=1.9e+02 Score=24.09 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=32.1
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCChhhhhhh-hhhcCCCC
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIVVGGGNIFRGAS-AAGNSGLD 154 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~G-vqIAIVVGGGNI~RG~~-~Ar~lGid 154 (170)
+|.+|+-..--.|. +. .+.....|+++.+.| .+-.|..++||..+... .++..|++
T Consensus 33 ~i~~K~E~~nptgS----~K---dr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~ 90 (304)
T cd01562 33 EVYLKCENLQKTGS----FK---IRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIP 90 (304)
T ss_pred eEEEEeccCCCcCC----cH---HHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence 68889877543221 11 122223344444433 45577889999999964 44556654
No 383
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=20.97 E-value=86 Score=24.27 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=40.5
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG 162 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIG 162 (170)
.|||.++.+..-. -|. .-..+.+.+.++.+. ..+-||+-|=....-+.+++++|++-.+.+|.|
T Consensus 171 ~iKld~~~~~~~~---~~~-~~~~~l~~l~~~~~~-~~~~via~gVe~~~~~~~l~~~Gi~~~QG~~~~ 234 (241)
T smart00052 171 LLKIDKSFVRDLQ---TDP-EDEAIVQSIIELAQK-LGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFS 234 (241)
T ss_pred eEEECHHHHhhhc---cCh-hHHHHHHHHHHHHHH-CCCeEEEecCCCHHHHHHHHHcCCCEEeeceec
Confidence 6899999775321 122 233444555555542 345567777666777776778999988888776
No 384
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=20.94 E-value=1e+02 Score=23.94 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchh
Q 030876 119 AREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (170)
Q Consensus 119 A~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrat 157 (170)
.+.|+.+.+.|++++|+.|+-...=...+ +..|++.-+
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f 149 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILF 149 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhC
Confidence 46667777889999999987543222233 346765443
No 385
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=20.89 E-value=1.5e+02 Score=23.90 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCChhh
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGGGNIF 142 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGGGNI~ 142 (170)
=+.+++.|.++.+.+-.+.||||.|-..
T Consensus 213 N~~~~~~i~~~l~~~~~~fvvVGa~HL~ 240 (259)
T PF01963_consen 213 NRRWAEKIEELLKEGGTVFVVVGAGHLP 240 (259)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEcchhcc
Confidence 3568888999888766899999998765
No 386
>PRK13685 hypothetical protein; Provisional
Probab=20.87 E-value=1.7e+02 Score=25.32 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=30.2
Q ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHH---hCCcEEEEEEcCChh
Q 030876 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVT---RLGIEVAIVVGGGNI 141 (170)
Q Consensus 92 RVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~---~~GvqIAIVVGGGNI 141 (170)
-+||.+||+-...| +.+.++...-+.++++. ..|-++++|+=+|+.
T Consensus 92 vlvlD~S~SM~~~D----~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a 140 (326)
T PRK13685 92 MLVIDVSQSMRATD----VEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTA 140 (326)
T ss_pred EEEEECCccccCCC----CCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCce
Confidence 37999999976544 34555555444444444 346799999877764
No 387
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=20.86 E-value=2e+02 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHH--HHHHhCCcEEEEEEcCChhhhh
Q 030876 114 ITMAIAREV--ASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 114 ~l~~iA~eI--kel~~~GvqIAIVVGGGNI~RG 144 (170)
..+++++.+ .+..+.|.+|++++.|=..|=+
T Consensus 59 ~~~~~~~~i~~~~~~~~g~~V~~l~~GDP~~~~ 91 (210)
T PF00590_consen 59 SYDEIAEIIEAIEAAKEGKDVVVLVSGDPLFFS 91 (210)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEESBSTTSSS
T ss_pred hhhHHHHHHHHHHHHhccCCEEEeCCCCCCccc
Confidence 467777777 6777788899999977665554
No 388
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=20.86 E-value=2e+02 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEEEcCC
Q 030876 113 KITMAIAREVASVTRLGI-EVAIVVGGG 139 (170)
Q Consensus 113 ~~l~~iA~eIkel~~~Gv-qIAIVVGGG 139 (170)
+.+..+-+.|.++.+.+. ++-||.|-|
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 456677778888876664 788888877
No 389
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=20.83 E-value=2.8e+02 Score=22.70 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=41.0
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhhee
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGYFL 165 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGMLA 165 (170)
+-+-|||.+.+-.. ....++++.+.|+++.+.|..|...+. |-.--||-+| ...|+..+.--|+..
T Consensus 46 ~ik~vvL~~~s~gg--------~~~~~~el~~~i~~~~~~~kpVia~~~-~~~sggy~la--saad~I~a~p~~~vg 111 (222)
T cd07018 46 RIKGIVLDLDGLSG--------GLAKLEELRQALERFRASGKPVIAYAD-GYSQGQYYLA--SAADEIYLNPSGSVE 111 (222)
T ss_pred CeEEEEEECCCCCC--------CHHHHHHHHHHHHHHHHhCCeEEEEeC-CCCchhhhhh--hhCCEEEECCCceEE
Confidence 57889999866432 455678888889888766666544444 4444555543 345666655554444
No 390
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=20.82 E-value=3.1e+02 Score=23.41 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=36.2
Q ss_pred eEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCc----EEEEEEcCChhhhhhh-hhhcCCC
Q 030876 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGAS-AAGNSGL 153 (170)
Q Consensus 91 kRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~Gv----qIAIVVGGGNI~RG~~-~Ar~lGi 153 (170)
.+|.+|+-+.--.|. + +.+.....|..+.+.|. +..|...+||..+... .++.+|+
T Consensus 23 ~~i~~K~E~~nptGS----~---K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~ 83 (290)
T TIGR01138 23 SEVWLKLEGNNPAGS----V---KDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY 83 (290)
T ss_pred CeEEEEEccCCCCcc----H---HHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCC
Confidence 379999977533221 2 33444455666666676 6677889999999954 4555665
No 391
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=20.76 E-value=1.1e+02 Score=23.68 Aligned_cols=63 Identities=10% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhh
Q 030876 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG 162 (170)
Q Consensus 94 LLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIG 162 (170)
.|||+++.+.. .. |+. -..+.+.+.++.+. ..+-||+-|=+-.-...+++++|++-...+++|
T Consensus 172 ~ikld~~~~~~---~~-~~~-~~~~l~~l~~~~~~-~~~~via~gVe~~~~~~~l~~~G~~~~QG~~~~ 234 (236)
T PF00563_consen 172 YIKLDGSLVRD---LS-DEE-AQSLLQSLINLAKS-LGIKVIAEGVESEEQLELLKELGVDYIQGYLFS 234 (236)
T ss_dssp EEEEEHHGHTT---TT-SHH-HHHHHHHHHHHHHH-TT-EEEEECE-SHHHHHHHHHTTESEEESTTTB
T ss_pred cceeecccccc---cc-hhh-HHHHHHHHHHHhhc-cccccceeecCCHHHHHHHHHcCCCEEEeCCcc
Confidence 78999998832 12 433 34444545555543 355666666666666666678999888888765
No 392
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=20.74 E-value=1.2e+02 Score=26.39 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhh-hhhcCCCCchhhhhh
Q 030876 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYI 161 (170)
Q Consensus 110 iD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~-~Ar~lGidrataDyI 161 (170)
-+.+.+++.++++++ .|....|-||||...--.. ++--..-++...||.
T Consensus 62 p~~~~v~~~~~~~~~---~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~ 111 (366)
T PF00465_consen 62 PTLEDVDEAAEQARK---FGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLL 111 (366)
T ss_dssp -BHHHHHHHHHHHHH---TTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGG
T ss_pred CcHHHHHHHHHHHHh---cCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHH
Confidence 356667777776664 5789999999999887743 221122233455654
No 393
>PRK10565 putative carbohydrate kinase; Provisional
Probab=20.68 E-value=1e+02 Score=29.07 Aligned_cols=33 Identities=21% Similarity=0.043 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCCh-hhhhhhhhh
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAG 149 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGN-I~RG~~~Ar 149 (170)
.++++|++....+.+|.||+|-|| =-.|+-+||
T Consensus 48 ~va~~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR 81 (508)
T PRK10565 48 AAFQVARSAYPDARHWLVLCGHGNNGGDGYVVAR 81 (508)
T ss_pred HHHHHHHHhcCCCCeEEEEEcCCCchHHHHHHHH
Confidence 445566554444568999999555 445544444
No 394
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=20.63 E-value=1e+02 Score=26.93 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=27.2
Q ss_pred cceEEEEEeecceecCC--C--CCC-CCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhh
Q 030876 89 KWQRVLLKVSGEALAGD--H--TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (170)
Q Consensus 89 kykRVLLKLSGEaLagd--~--~~g-iD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG 144 (170)
.|.++||-.+.+....+ . ..+ +....+ .-+..+++....|-+ ++|||||.+.-.
T Consensus 100 ~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~-~da~~l~~~~~~~~~-vvViGgG~ig~E 158 (396)
T PRK09754 100 HWDQLFIATGAAARPLPLLDALGERCFTLRHA-GDAARLREVLQPERS-VVIVGAGTIGLE 158 (396)
T ss_pred EcCEEEEccCCCCCCCCCCCcCCCCEEecCCH-HHHHHHHHHhhcCCe-EEEECCCHHHHH
Confidence 58888888877642211 0 001 110001 123334444444545 467899987555
No 395
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=20.45 E-value=1.3e+02 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcC
Q 030876 116 MAIAREVASVTRLGIEVAIVVGG 138 (170)
Q Consensus 116 ~~iA~eIkel~~~GvqIAIVVGG 138 (170)
+++...++.+ ..|++-+|+||+
T Consensus 47 ~Rm~~a~~~~-~~g~~~vvliGs 68 (122)
T PF09837_consen 47 ERMANAFQQA-ARGYEPVVLIGS 68 (122)
T ss_dssp HHHHHHHHHH-HTT-SEEEEE-S
T ss_pred HHHHHHHHHH-HcCCCcEEEEcC
Confidence 5677777777 789999999986
No 396
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.32 E-value=1.1e+02 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEEEcCChh-----hhh-hhhhhcCCCCchhh
Q 030876 111 DPKITMAIAREVASVTRLGI-EVAIVVGGGNI-----FRG-ASAAGNSGLDRSSA 158 (170)
Q Consensus 111 D~~~l~~iA~eIkel~~~Gv-qIAIVVGGGNI-----~RG-~~~Ar~lGidrata 158 (170)
..+.++++.+.+++ .|. .+.||+||+-. ++. ....+++|+++.+.
T Consensus 65 ~~~~~~~~~~~l~~---~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 65 GEIDCKGLRQKCDE---AGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred CHHHHHHHHHHHHH---CCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEEC
Confidence 34456666666655 444 34455666532 222 12246688877654
No 397
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=20.32 E-value=1.9e+02 Score=23.82 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChh
Q 030876 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (170)
Q Consensus 107 ~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI 141 (170)
..++|++....+.+.|+++.+.|..|.+|.--=.+
T Consensus 187 t~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~ 221 (247)
T cd03275 187 DAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF 221 (247)
T ss_pred cccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH
Confidence 34799999999999999998878888887665333
No 398
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=20.26 E-value=1.6e+02 Score=23.72 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhh
Q 030876 115 TMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG 162 (170)
Q Consensus 115 l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIG 162 (170)
+..+.+.++++.+.|++++||.+.....=-..+. .+|+..-+..-.|
T Consensus 91 ~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~-~~gl~~~F~~i~g 137 (220)
T COG0546 91 FPGVKELLAALKSAGYKLGIVTNKPERELDILLK-ALGLADYFDVIVG 137 (220)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHH-HhCCccccceEEc
Confidence 3445677888999999999999876554443332 3666655543333
No 399
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=20.25 E-value=4e+02 Score=21.63 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=40.2
Q ss_pred cceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCchhhhhhhh
Q 030876 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGY 163 (170)
Q Consensus 89 kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidrataDyIGM 163 (170)
+-+-|||.+.. .+-+......+++.|+++.+ |..|...+.|--.--||.+| ...|+..+..-++
T Consensus 42 ~i~~Vvl~~~s--------~gg~~~~~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA--~~aD~i~a~~~a~ 105 (214)
T cd07022 42 DVRAIVLDIDS--------PGGEVAGVFELADAIRAARA-GKPIVAFVNGLAASAAYWIA--SAADRIVVTPTAG 105 (214)
T ss_pred CCcEEEEEEeC--------CCCcHHHHHHHHHHHHHHhc-CCCEEEEECCchhhHHHHHH--hcCCEEEEcCCCe
Confidence 56788998632 12356677888999998876 66665555554455666654 3456665554443
No 400
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=20.16 E-value=2.1e+02 Score=23.57 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEEcCChhhhhhhhhhcCCCC
Q 030876 110 IDPKITMAIAREVASVTRL-GIEVAIVVGGGNIFRGASAAGNSGLD 154 (170)
Q Consensus 110 iD~~~l~~iA~eIkel~~~-GvqIAIVVGGGNI~RG~~~Ar~lGid 154 (170)
.||+.++.+++.+.+..+. ++...+-+..+.|.=+..+|..+|.+
T Consensus 30 ~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p 75 (191)
T TIGR01744 30 IDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVP 75 (191)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCC
Confidence 6999999999999998753 45554445555555555455555544
No 401
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=20.12 E-value=94 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 112 PKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 112 ~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
...+.+++..++.+++. |++||||
T Consensus 160 ~~~L~~~~~~L~~lA~~-~~iaVvv 183 (256)
T PF08423_consen 160 QRMLARLARILKRLARK-YNIAVVV 183 (256)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHHh-CCceEEe
Confidence 46788899999999987 8999886
No 402
>PLN02282 phosphoglycerate kinase
Probab=20.11 E-value=2.9e+02 Score=25.95 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=35.0
Q ss_pred CcceEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 030876 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (170)
Q Consensus 88 ~kykRVLLKLSGEaLagd~~~giD~~~l~~iA~eIkel~~~GvqIAIVV 136 (170)
++=|||||.+-=-+=..+++.-.|..+|+....-|+.+.++|.+|.++-
T Consensus 15 ~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~S 63 (401)
T PLN02282 15 LKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCS 63 (401)
T ss_pred ccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3567888887544322222334577899999999999999999977664
No 403
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.01 E-value=1.6e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCChhhhhhhhhhcCCCCch
Q 030876 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS 156 (170)
Q Consensus 117 ~iA~eIkel~~~GvqIAIVVGGGNI~RG~~~Ar~lGidra 156 (170)
.+.+.|+.+.+.|++++|+.++.+..+ .+ +.+|+++-
T Consensus 91 g~~~~L~~L~~~g~~~~i~s~~~~~~~--~l-~~~~l~~~ 127 (185)
T TIGR01990 91 GIKNLLDDLKKNNIKIALASASKNAPT--VL-EKLGLIDY 127 (185)
T ss_pred cHHHHHHHHHHCCCeEEEEeCCccHHH--HH-HhcCcHhh
Confidence 344567888889999999987655321 22 34565533
Done!