Query 030877
Match_columns 170
No_of_seqs 115 out of 1163
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 8.5E-36 2.9E-40 236.4 11.4 128 34-162 1-231 (248)
2 1kca_A Repressor protein CI; g 99.3 1.9E-11 6.4E-16 84.9 11.0 90 40-163 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.1 3.6E-10 1.2E-14 79.0 9.7 87 39-159 27-114 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.9 1.8E-08 6.3E-13 76.4 11.2 87 40-159 111-199 (202)
5 2hnf_A Repressor protein CI101 98.9 2E-08 6.7E-13 71.7 10.5 82 40-155 45-132 (133)
6 3bdn_A Lambda repressor; repre 98.8 1.2E-08 4.3E-13 78.8 8.4 90 40-163 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.6 5.8E-07 2E-11 67.9 11.5 85 39-157 109-194 (196)
8 2fjr_A Repressor protein CI; g 96.7 0.0097 3.3E-07 43.7 8.8 75 47-158 113-187 (189)
9 1w4s_A Polybromo, polybromo 1 58.8 10 0.00036 27.3 3.9 94 50-155 6-107 (174)
10 3v2d_O 50S ribosomal protein L 53.5 51 0.0017 22.5 9.5 27 119-146 79-105 (122)
11 3a2z_A Bifunctional glutathion 53.1 54 0.0018 24.3 7.1 38 70-107 110-148 (197)
12 3r8s_K 50S ribosomal protein L 50.6 57 0.002 22.3 8.2 29 119-147 79-107 (122)
13 3bbo_M Ribosomal protein L14; 45.6 69 0.0024 21.8 8.2 27 120-147 80-106 (121)
14 2do3_A Transcription elongatio 44.8 34 0.0012 21.0 4.0 35 70-106 16-50 (69)
15 1whi_A Ribosomal protein L14; 38.4 93 0.0032 21.2 8.3 27 119-146 79-105 (122)
16 4dov_A ORC1, origin recognitio 37.3 1.1E+02 0.0039 21.9 6.5 26 71-97 38-63 (163)
17 2vob_A Trypanothione synthetas 37.3 1.2E+02 0.004 26.7 7.8 38 70-107 110-147 (652)
18 2kr7_A FKBP-type peptidyl-prol 33.8 1.1E+02 0.0036 21.2 5.8 35 71-107 93-127 (151)
19 2dgy_A MGC11102 protein; EIF-1 33.4 33 0.0011 23.0 2.9 39 44-83 24-65 (111)
20 4dt4_A FKBP-type 16 kDa peptid 33.0 90 0.0031 22.3 5.4 35 71-107 112-146 (169)
21 1jt8_A EIF-1A, probable transl 29.7 21 0.00071 23.7 1.3 11 72-82 59-69 (102)
22 1d7q_A Translation initiation 24.9 61 0.0021 22.8 3.1 41 42-82 38-80 (143)
23 3i4o_A Translation initiation 24.7 29 0.001 21.8 1.3 13 71-83 53-65 (79)
24 3mea_A SAGA-associated factor 24.5 83 0.0028 23.0 3.9 58 70-129 43-104 (180)
25 2io8_A Bifunctional glutathion 22.8 3E+02 0.01 23.8 7.8 39 69-107 109-148 (619)
26 1wid_A DNA-binding protein RAV 21.0 1.1E+02 0.0037 20.6 3.8 16 70-85 90-105 (130)
27 2wad_A Penicillin-binding prot 20.4 52 0.0018 28.8 2.5 8 71-78 57-64 (680)
28 2pp6_A Gifsy-2 prophage ATP-bi 20.1 1.8E+02 0.0062 19.1 4.5 27 70-100 62-88 (102)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=8.5e-36 Score=236.36 Aligned_cols=128 Identities=31% Similarity=0.492 Sum_probs=109.2
Q ss_pred HhhceEEeEEEeCCCCcccCCCCCcEEEEEeccCC------------CCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCE
Q 030877 34 VNTYVCTPALAYGPSMLPTINLTGDLVLAERISTR------------FNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDR 101 (170)
Q Consensus 34 ~~~~~~~~~~v~~~SM~P~l~~~Gd~v~v~~~~~~------------~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~ 101 (170)
++.|+++.+.|.|+||+|||+ .||++++++..|. ..++++||+|+|+.|.+++..++|||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEecccccccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 457899999999999999999 9999999998653 258999999999998777889999999999999
Q ss_pred EEEecC-------C-----------CCC--------C-------------------------------------------
Q 030877 102 VSYVAD-------P-----------KSS--------D------------------------------------------- 112 (170)
Q Consensus 102 v~i~~~-------~-----------~~~--------~------------------------------------------- 112 (170)
|.++++ + ... .
T Consensus 80 v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~ 159 (248)
T 1b12_A 80 VTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVT 159 (248)
T ss_dssp EEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCcc
Confidence 998765 2 100 0
Q ss_pred ----------------------CcceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCc
Q 030877 113 ----------------------KFETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWPPKDF 162 (170)
Q Consensus 113 ----------------------~~~~~~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~ 162 (170)
...+++||+|+|||||||+++|.|||+||+|++++|+|||++++||+++.
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 160 HRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp EEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred ceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 11256999999999999999999999999999999999999999988854
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.32 E-value=1.9e-11 Score=84.87 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=69.8
Q ss_pred EeEEEeCCCCc------ccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCC
Q 030877 40 TPALAYGPSML------PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDK 113 (170)
Q Consensus 40 ~~~~v~~~SM~------P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~ 113 (170)
...+|.|+||+ |++. +||++++++. .+++.||+|++..+. +...+||+...+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~Vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFKKLIRDS--------------- 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCC-TTCEEEEETT----SCCCTTCEEEEECST--TCEEEEEEEEET---------------
T ss_pred EEEEEeCcCcCCCCCCCCeeC-CCCEEEEecC----CcCCCCCEEEEEECC--CeEEEEEEEEeC---------------
Confidence 35789999999 9998 9999999984 369999999998753 478999998743
Q ss_pred cceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCcc
Q 030877 114 FETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWPPKDFG 163 (170)
Q Consensus 114 ~~~~~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 163 (170)
|.+++.+||+.. ...... ..-+|+|++++.+||+..|+
T Consensus 72 --------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 --------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp --------TEEEEECSSTTS--CCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred --------CEEEEEECCCCC--CCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 467788888632 111111 35689999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.13 E-value=3.6e-10 Score=78.95 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=62.8
Q ss_pred EEeEEEeCCCCcc-cCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCCcceE
Q 030877 39 CTPALAYGPSMLP-TINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETV 117 (170)
Q Consensus 39 ~~~~~v~~~SM~P-~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~~~~~ 117 (170)
....+|.|+||+| +++ +||++++++. .+++.||+|++..+ +...+||+...+
T Consensus 27 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~gdivv~~~~---~~~~vKr~~~~~------------------- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGIS-DGDLLIVDSA----ITASHGDIVIAAVD---GEFTVKKLQLRP------------------- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEETT----SCCCTTCEEEEEET---TEEEEEEEECSS-------------------
T ss_pred EEEEEECCCCcCCCCCC-CCCEEEEEcC----CCCCCCCEEEEEEC---CEEEEEEEEeCC-------------------
Confidence 4568899999999 898 9999999984 36999999999875 478999998732
Q ss_pred EecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCC
Q 030877 118 VVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWPP 159 (170)
Q Consensus 118 ~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~ 159 (170)
.+++.+||+. +.......-..-+|+|++++.+..+
T Consensus 80 -----~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~ 114 (116)
T 1umu_A 80 -----TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAA 114 (116)
T ss_dssp -----SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC--
T ss_pred -----cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEec
Confidence 4667777752 1111111112347999999987654
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.88 E-value=1.8e-08 Score=76.36 Aligned_cols=87 Identities=24% Similarity=0.178 Sum_probs=61.7
Q ss_pred EeEEEeCCCCccc-CCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCCcceEE
Q 030877 40 TPALAYGPSMLPT-INLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVV 118 (170)
Q Consensus 40 ~~~~v~~~SM~P~-l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~~~~~~ 118 (170)
...+|.|+||+|+ +. +||++++++. .+++.||+|++... +...+||+. .+|+
T Consensus 111 ~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~G~i~v~~~~---~~~~vKrl~-~~~~------------------ 163 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIM-DGDLLAVHKT----QDVRNGQVVVARID---DEVTVKRLK-KQGN------------------ 163 (202)
T ss_dssp EEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTSEEEEEET---TEEEEEEEE-EETT------------------
T ss_pred EEEEECCCCCCCCCCC-CCCEEEEecc----CCcCCCeEEEEEEC---CEEEEEEEE-EeCC------------------
Confidence 4578899999999 98 9999999884 36899999999874 578999998 3554
Q ss_pred ecCCeEEEEcCCCCCCCCCCccc-cccCCCeEEEEEEEEeCC
Q 030877 119 VPQGHVWIEGDNIYESNDSRKFG-AVPYGLIEGRVFLRIWPP 159 (170)
Q Consensus 119 ip~~~y~vlgdn~~~s~DSR~~G-~V~~~~I~Gkv~~~~~p~ 159 (170)
.+++.+||+.. ...... .-..-+|+|+|++.+..+
T Consensus 164 ----~~~l~s~N~~y--~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 164 ----KVELLPENSEF--KPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp ----EEEEECSSTTC--CCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred ----EEEEEECCCCC--CCEEccCCCCceEEEEEEEEEEEcc
Confidence 55666676421 111111 012236999999987654
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.88 E-value=2e-08 Score=71.71 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred EeEEEeCCCCc------ccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCC
Q 030877 40 TPALAYGPSML------PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDK 113 (170)
Q Consensus 40 ~~~~v~~~SM~------P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~ 113 (170)
...+|.|+||+ |++. +||++++++. .+++.||+|++..+. +...+||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFAKLIRDS--------------- 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCC-TTCEEEEETT----SCCCTTSEEEEEETT--TEEEEEEEEEET---------------
T ss_pred EEEEEeCCCcCCCcCCCCccC-CCCEEEEccC----CCCCCCCEEEEEECC--CEEEEEEEEEeC---------------
Confidence 45789999999 9998 9999999984 478999999998753 578999997633
Q ss_pred cceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEE
Q 030877 114 FETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLR 155 (170)
Q Consensus 114 ~~~~~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~ 155 (170)
|.+++.+||+.. ...... ..-+|+|+|++.
T Consensus 103 --------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 --------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp --------TEEEEECSSTTS--CCEECS--TTEEEEEEEEEE
T ss_pred --------CeEEEEECCCCC--CCEEcC--CCCEEEEEEEEE
Confidence 467777888632 111111 345799999874
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.82 E-value=1.2e-08 Score=78.76 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=67.1
Q ss_pred EeEEEeCCCCc------ccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCC
Q 030877 40 TPALAYGPSML------PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDK 113 (170)
Q Consensus 40 ~~~~v~~~SM~------P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~ 113 (170)
...+|.|+||+ |++. +||++++++. .+++.||+|++... .+...+||+...+
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~-~Gd~v~vd~~----~~~~~g~ivv~~~~--~~~~~vKrl~~~~--------------- 198 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARLG--GDEFTFKKLIRGS--------------- 198 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCC-SSCEEEECCS----SCCCTTSEEEEEST--TTCCCCEEEECCS---------------
T ss_pred EEEEEeCCCcCCCCCCCCcCC-CCCEEEECCC----CCCCCCcEEEEEEC--CCeEEEEEEEEcC---------------
Confidence 35689999999 9998 9999999874 37899999999863 2567899997643
Q ss_pred cceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCcc
Q 030877 114 FETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWPPKDFG 163 (170)
Q Consensus 114 ~~~~~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 163 (170)
|.+++.+||+.. .....- ..-.|+|+|++..||...|+
T Consensus 199 --------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 199 --------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp --------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred --------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 356677777521 111111 34579999999999988774
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.60 E-value=5.8e-07 Score=67.92 Aligned_cols=85 Identities=24% Similarity=0.136 Sum_probs=62.1
Q ss_pred EEeEEEeCCCC-cccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCCcceE
Q 030877 39 CTPALAYGPSM-LPTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETV 117 (170)
Q Consensus 39 ~~~~~v~~~SM-~P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~~~~~ 117 (170)
....+|.|+|| +|++. +||++++++. ..++.||+|++... +...+||+.-.+
T Consensus 109 ~f~l~v~GdSM~~p~i~-~GD~viv~~~----~~~~~G~ivv~~~~---~~~~vKr~~~~~------------------- 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHIC-DGDLVLVRRQ----DWAQNGDIVAAMVD---GEVTLAKFYQRG------------------- 161 (196)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTCEEEEEET---TEEEEEEEEEET-------------------
T ss_pred EEEEEEeCCCcCCCCCC-CCCEEEEecc----CcCCCCCEEEEEEC---CcEEEEEEEEEC-------------------
Confidence 45679999999 69998 9999999984 36899999999875 588999996532
Q ss_pred EecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEe
Q 030877 118 VVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIW 157 (170)
Q Consensus 118 ~ip~~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~ 157 (170)
|.+++..+|+.. .....- -..-.|+|+|++.+.
T Consensus 162 ----~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 162 ----DTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR 194 (196)
T ss_dssp ----TEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred ----CEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence 466777777522 111111 123489999998764
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.72 E-value=0.0097 Score=43.73 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCCcccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecCCCCCCCcceEEecCCeEEE
Q 030877 47 PSMLPTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWI 126 (170)
Q Consensus 47 ~SM~P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~~~~~~~~~~~~ip~~~y~v 126 (170)
++|...-. +||++++++. .+..|+++++... +...+||+.-.+|+ .+.+
T Consensus 113 ~~~~~v~~-~Gd~v~Vd~~-----~~~~g~i~vv~~~---g~~~vKrl~~~~~~----------------------~i~L 161 (189)
T 2fjr_A 113 TDGMAIRS-EGKIYFVDKQ-----ASLSDGLWLVDIK---GAISIRELTKLPGR----------------------KLHV 161 (189)
T ss_dssp SSEEEEEE-TTEEEEEETT-----CCSCSEEEEEEET---TEEEEEEEEEETTT----------------------EEEE
T ss_pred CCeEEEee-CCcEEEEEcC-----CccCCCEEEEEeC---CeEEEEEEEECCCC----------------------EEEE
Confidence 34444444 8999999873 3677999999864 57899999876655 4445
Q ss_pred EcCCCCCCCCCCccccccCCCeEEEEEEEEeC
Q 030877 127 EGDNIYESNDSRKFGAVPYGLIEGRVFLRIWP 158 (170)
Q Consensus 127 lgdn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p 158 (170)
..+|++. ..- ...=.|+|+|++.+..
T Consensus 162 ~s~N~~~-----~i~-~~~i~IiG~Vv~~~r~ 187 (189)
T 2fjr_A 162 AGGKVPF-----ECG-IDDIKTLGRVVGVYSE 187 (189)
T ss_dssp ESSSSCE-----EEE-TTSSEEEEEEEEEEEE
T ss_pred EeCCCCe-----Eec-ccceEEEEEEEEEEEe
Confidence 5555411 110 1334699999987643
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=58.78 E-value=10 Score=27.28 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred cccCCCCCcEEEEEeccCCCCCCCCCcEEEEEcCCCCCeeEEEEEEEe----CCCEEEEecC----CCCCCCcceEEecC
Q 030877 50 LPTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGM----EGDRVSYVAD----PKSSDKFETVVVPQ 121 (170)
Q Consensus 50 ~P~l~~~Gd~v~v~~~~~~~~~~~~GDiV~f~~p~~~~~~~vkRVva~----~GD~v~i~~~----~~~~~~~~~~~ip~ 121 (170)
+|... .+.......+.+....++.||.|.+..+.++....|.||..+ .|+ ..+.-. +...........-+
T Consensus 6 ~~~~~-~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~~~~~~ 83 (174)
T 1w4s_A 6 SAGLS-SLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLATRKFLE 83 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTTCEEET
T ss_pred Ccccc-CCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccCCcCCC
Confidence 45555 556555554444446799999999988755556778777653 233 222100 11111001111126
Q ss_pred CeEEEEcCCCCCCCCCCccccccCCCeEEEEEEE
Q 030877 122 GHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLR 155 (170)
Q Consensus 122 ~~y~vlgdn~~~s~DSR~~G~V~~~~I~Gkv~~~ 155 (170)
+++|... .+-.++.+.|+||..-.
T Consensus 84 ~EvF~S~----------~~d~~~~~~I~gkC~V~ 107 (174)
T 1w4s_A 84 KEVFKSD----------YYNKVPVSKILGKCVVM 107 (174)
T ss_dssp TEEEEEE----------EEEEEEGGGEEEEEEEE
T ss_pred CeeEEeC----------CcceecHHHeeeeEEEE
Confidence 6777632 34467788899987543
No 10
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=53.53 E-value=51 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCC
Q 030877 119 VPQGHVWIEGDNIYESNDSRKFGAVPYG 146 (170)
Q Consensus 119 ip~~~y~vlgdn~~~s~DSR~~G~V~~~ 146 (170)
..+|..-++.++- +..-+|-||||++|
T Consensus 79 FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 79 FDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp ESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 3456666666664 78899999999875
No 11
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=53.08 E-value=54 Score=24.26 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcC-CCCCeeEEEEEEEeCCCEEEEecC
Q 030877 70 NKVCPGDVVLVRSP-VVPRRIVTKRVIGMEGDRVSYVAD 107 (170)
Q Consensus 70 ~~~~~GDiV~f~~p-~~~~~~~vkRVva~~GD~v~i~~~ 107 (170)
..|+.||+++|... +....=.|--|..+.+++|.+.+.
T Consensus 110 ~~P~~Gdl~V~~~g~~~~~yGHVAvV~~V~~~~i~i~EQ 148 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQ 148 (197)
T ss_dssp SCCCTTCEEEECSCGGGTTTCEEEEEEEECSSEEEEECS
T ss_pred CCCCCCeEEEECCCCcCCCCccEEEEEEEcCCeEEEEec
Confidence 57999999999762 212233566677788899988654
No 12
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=50.56 E-value=57 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=21.3
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCCC
Q 030877 119 VPQGHVWIEGDNIYESNDSRKFGAVPYGL 147 (170)
Q Consensus 119 ip~~~y~vlgdn~~~s~DSR~~G~V~~~~ 147 (170)
..+|..-++.++..+..-+|-||||++|.
T Consensus 79 FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 79 FDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp ESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred cCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 34567777777733678999999998863
No 13
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=45.60 E-value=69 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCCC
Q 030877 120 PQGHVWIEGDNIYESNDSRKFGAVPYGL 147 (170)
Q Consensus 120 p~~~y~vlgdn~~~s~DSR~~G~V~~~~ 147 (170)
.+|..-++.++- +..-+|-||||++|.
T Consensus 80 ddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred CCceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 445666666664 788999999999863
No 14
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=44.81 E-value=34 Score=20.99 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=18.7
Q ss_pred CCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEec
Q 030877 70 NKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVA 106 (170)
Q Consensus 70 ~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~ 106 (170)
+.++.||-|-.-.....+ -..-|+.+.+|.+.+-.
T Consensus 16 K~F~~GDHVkVi~G~~~g--etGlVV~v~~d~v~v~S 50 (69)
T 2do3_A 16 KYFKMGDHVKVIAGRFEG--DTGLIVRVEENFVILFS 50 (69)
T ss_dssp SSCCTTCEEEESSSTTTT--CEEEEEEECSSCEEEEE
T ss_pred eeccCCCeEEEeccEEcC--ceEEEEEEeCCEEEEEe
Confidence 356777777665432112 23456666666665543
No 15
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=38.38 E-value=93 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCC
Q 030877 119 VPQGHVWIEGDNIYESNDSRKFGAVPYG 146 (170)
Q Consensus 119 ip~~~y~vlgdn~~~s~DSR~~G~V~~~ 146 (170)
..+|..-++.++- +..-+|-||||++|
T Consensus 79 FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 79 FDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred eCCceEEEECCCC-CEeeeEEEccchHH
Confidence 3456677777664 78899999999875
No 16
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=37.29 E-value=1.1e+02 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=15.7
Q ss_pred CCCCCcEEEEEcCCCCCeeEEEEEEEe
Q 030877 71 KVCPGDVVLVRSPVVPRRIVTKRVIGM 97 (170)
Q Consensus 71 ~~~~GDiV~f~~p~~~~~~~vkRVva~ 97 (170)
.++.||.|+++.. +....+|.|+..+
T Consensus 38 ~i~vGd~VLI~~~-D~~~PyVAki~~l 63 (163)
T 4dov_A 38 HIKVGQFVLIQGE-DNKKPYVAKLIEL 63 (163)
T ss_dssp EEETTCEEEECCS-SSSCCEEEEEEEE
T ss_pred EEeeCCEEEEeCC-cccCChhHHHHHH
Confidence 3566777777554 2245577777665
No 17
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=37.27 E-value=1.2e+02 Score=26.66 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=28.9
Q ss_pred CCCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecC
Q 030877 70 NKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 107 (170)
Q Consensus 70 ~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~ 107 (170)
..|+.||+++|........=.|--|+.+.+++|.+.+.
T Consensus 110 ~~P~~GdllV~~~~~~~p~GHVAVV~~V~~~~v~i~EQ 147 (652)
T 2vob_A 110 TKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQ 147 (652)
T ss_dssp SCCCSSEEEEECCCSSCTTCEEEEEEEECSSEEEEECS
T ss_pred CCCCCceEEEEcCCCCCCCCcEEEEEEecCCEEEEEEe
Confidence 58999999999974333333677788888999998654
No 18
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=33.79 E-value=1.1e+02 Score=21.24 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecC
Q 030877 71 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 107 (170)
Q Consensus 71 ~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~ 107 (170)
.++.|+.+.+..+. +..+.-+|..+.+|+|.+.-|
T Consensus 93 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~v~vD~N 127 (151)
T 2kr7_A 93 ELEKGMSVFGQTED--NQTIQAIIKDFSATHVMVDYN 127 (151)
T ss_dssp CCCTTCEEEEEETT--TEEEEEEEEEECSSEEEEEEC
T ss_pred CCccCCEEEEECCC--CCEEEEEEEEECCCEEEEECC
Confidence 68899999998764 456778899999999999765
No 19
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.42 E-value=33 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=20.0
Q ss_pred EeCCCCcccCCCCCcEEEEEeccCCC---CCCCCCcEEEEEcC
Q 030877 44 AYGPSMLPTINLTGDLVLAERISTRF---NKVCPGDVVLVRSP 83 (170)
Q Consensus 44 v~~~SM~P~l~~~Gd~v~v~~~~~~~---~~~~~GDiV~f~~p 83 (170)
..|+.|.-...++|..+++.- +-.+ --+.+||+|+++..
T Consensus 24 ~lgn~~f~V~l~nG~~~la~i-~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 24 TPGNNLHEVETAQGQRFLVSM-PSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp CCSSSEEEEECTTSCEEEEEC-CTTCCSCCCCCSSCEEEEEEC
T ss_pred eCCCCEEEEEeCCCCEEEEEe-chhhcccEEEcCCCEEEEEec
Confidence 334444333222666666532 2111 23688888888753
No 20
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=33.03 E-value=90 Score=22.29 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCCCeeEEEEEEEeCCCEEEEecC
Q 030877 71 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 107 (170)
Q Consensus 71 ~~~~GDiV~f~~p~~~~~~~vkRVva~~GD~v~i~~~ 107 (170)
+++.|+.+.+..+. +..+.-+|..+.+|+|.+.-|
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~N 146 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDFN 146 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEECS
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeCC
Confidence 58899999998764 456778899999999999765
No 21
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=29.69 E-value=21 Score=23.67 Aligned_cols=11 Identities=55% Similarity=0.851 Sum_probs=7.8
Q ss_pred CCCCcEEEEEc
Q 030877 72 VCPGDVVLVRS 82 (170)
Q Consensus 72 ~~~GDiV~f~~ 82 (170)
+.+||.|+++.
T Consensus 59 I~~GD~VlVe~ 69 (102)
T 1jt8_A 59 VREGDVVIVKP 69 (102)
T ss_dssp CCSCEEEEECC
T ss_pred ecCCCEEEEEe
Confidence 67777777764
No 22
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.94 E-value=61 Score=22.77 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=19.8
Q ss_pred EEEeCCCCcccCCCCCcEEEEEeccC--CCCCCCCCcEEEEEc
Q 030877 42 ALAYGPSMLPTINLTGDLVLAERIST--RFNKVCPGDVVLVRS 82 (170)
Q Consensus 42 ~~v~~~SM~P~l~~~Gd~v~v~~~~~--~~~~~~~GDiV~f~~ 82 (170)
....+++|.-...++|..+++.--.. ..--+.+||+|++..
T Consensus 38 ~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 38 IKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp EEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred EEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 34445554433222555555532110 012367888888775
No 23
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=24.66 E-value=29 Score=21.81 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCCCCcEEEEEcC
Q 030877 71 KVCPGDVVLVRSP 83 (170)
Q Consensus 71 ~~~~GDiV~f~~p 83 (170)
.+..||.|.++..
T Consensus 53 ~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 53 RILPEDRVVVELS 65 (79)
T ss_dssp CCCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEC
Confidence 5788898888753
No 24
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=24.51 E-value=83 Score=22.95 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=40.4
Q ss_pred CCCCCCcEEEEEcCC--CCCeeEEEEEEEeCC--CEEEEecCCCCCCCcceEEecCCeEEEEcC
Q 030877 70 NKVCPGDVVLVRSPV--VPRRIVTKRVIGMEG--DRVSYVADPKSSDKFETVVVPQGHVWIEGD 129 (170)
Q Consensus 70 ~~~~~GDiV~f~~p~--~~~~~~vkRVva~~G--D~v~i~~~~~~~~~~~~~~ip~~~y~vlgd 129 (170)
..++.||-|+++... +.+.+++.+|+...| .+..+.|....+ ...++++..++..+-.
T Consensus 43 ~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d~eg--~~~~~~s~~~IIPLP~ 104 (180)
T 3mea_A 43 YVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEG--KERHTLSRRRVIPLPQ 104 (180)
T ss_dssp CCCCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECCTTC--CEEEEEEGGGEEECCS
T ss_pred cccCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCCCCC--ceeEEeCHHHEEECCC
Confidence 368999999999752 336789999998776 566776543322 2367888888888854
No 25
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=22.75 E-value=3e+02 Score=23.85 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEEEc-CCCCCeeEEEEEEEeCCCEEEEecC
Q 030877 69 FNKVCPGDVVLVRS-PVVPRRIVTKRVIGMEGDRVSYVAD 107 (170)
Q Consensus 69 ~~~~~~GDiV~f~~-p~~~~~~~vkRVva~~GD~v~i~~~ 107 (170)
...|+.||+++|.. .+....=.|--|+.+.++.|.+...
T Consensus 109 ~~~P~~g~l~v~~~~~~~~~~GHVavV~~v~~~~i~i~eQ 148 (619)
T 2io8_A 109 PRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQ 148 (619)
T ss_dssp SSCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEEECS
T ss_pred CCCCCCCeEEEECCCCcCCCCCcEEEEEEEeCCEEEEEee
Confidence 36899999999965 2222233667778888899988654
No 26
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=21.01 E-value=1.1e+02 Score=20.63 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.5
Q ss_pred CCCCCCcEEEEEcCCC
Q 030877 70 NKVCPGDVVLVRSPVV 85 (170)
Q Consensus 70 ~~~~~GDiV~f~~p~~ 85 (170)
..++.||+++|...++
T Consensus 90 ~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNG 105 (130)
T ss_dssp TTCCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 4788999999987543
No 27
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme antibiotic resistance, cell shape, peptidoglycan; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=20.43 E-value=52 Score=28.78 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=5.6
Q ss_pred CCCCCcEE
Q 030877 71 KVCPGDVV 78 (170)
Q Consensus 71 ~~~~GDiV 78 (170)
.+.||+|+
T Consensus 57 ~a~RG~I~ 64 (680)
T 2wad_A 57 SSARGEIY 64 (680)
T ss_dssp CCCCCCEE
T ss_pred cCCCceEE
Confidence 56788775
No 28
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=20.15 E-value=1.8e+02 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEEcCCCCCeeEEEEEEEeCCC
Q 030877 70 NKVCPGDVVLVRSPVVPRRIVTKRVIGMEGD 100 (170)
Q Consensus 70 ~~~~~GDiV~f~~p~~~~~~~vkRVva~~GD 100 (170)
-.|++||.|++.- ..++|+|---..|-
T Consensus 62 YrP~r~D~Vv~~G----k~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 62 VIPRRGDRVVLRG----SEFTVTRIRRFNGK 88 (102)
T ss_dssp CCCCTTCEEEETT----EEEEEEEEEEETTE
T ss_pred cccCCCCEEEEcC----cEEEEEEEEEECCc
Confidence 3799999999973 46788887766654
Done!