BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030879
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 339 bits (870), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 166/170 (97%)
Query: 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMAS 60
MTKQ WSPYDNNGGTCVA+AGADYCV AADTRMSTGY+IL+RDYSKIIKLADKCVMAS
Sbjct: 1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMAS 60
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD
Sbjct: 61 SGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
Query: 121 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170
+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ
Sbjct: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 324 bits (830), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 160/170 (94%)
Query: 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMAS 60
MTKQH WSPYDNNGGTCVAIAG+DYCV AADTRMSTGYSILSRDYSKI KLAD+ V++S
Sbjct: 1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD
Sbjct: 61 SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120
Query: 121 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170
EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP Q
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQ 170
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 132/160 (82%), Positives = 148/160 (92%)
Query: 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKAL 70
Y+NNGGTCVAIAGADYCV AADTR+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 71 QKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTY 130
K LAAR L+YQHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TY
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 131 DAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170
DAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPAR 168
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 5 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGF 63
H + Y +NGGT +A+AG DYCV A DTRMS G Y I +R Y+KI +L KCV+A+SG
Sbjct: 20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGM 79
Query: 64 QADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEG 123
QAD ALQK L + ++ +H K MS PA+ Q LSNTLYYKRFFPYY+FN++ G+D +G
Sbjct: 80 QADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQG 139
Query: 124 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+
Sbjct: 140 EGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQV 175
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 106/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R + + GS S ++ P LDNQ+
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 181
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 106/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 148
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R + + GS S ++ P LDNQ+
Sbjct: 149 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 180
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 106/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R + + GS S ++ P LDNQ+
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 181
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 105/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +A+AG D+ + A+DTR+S GYSI SRD K KL D V+ SGF D
Sbjct: 27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 86
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 87 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 146
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R Y + GS S ++ P LDNQ+
Sbjct: 147 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI 178
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 105/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +A+AG D+ + A+DTR+S GYSI SRD K KL D V+ SGF D
Sbjct: 26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 85
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 86 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 145
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R Y + GS S ++ P LDNQ+
Sbjct: 146 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI 177
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 105/152 (69%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++ GLD EGKG V
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAV 148
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSY+R + + GS S ++ P LDNQ+
Sbjct: 149 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 180
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 108/156 (69%)
Query: 4 QHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGF 63
+HP +SPY++NGG+ VAIAG D+ V AADTR+S+GY+I SR SK+ KL+ + V+ S+G
Sbjct: 18 KHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGC 77
Query: 64 QADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEG 123
AD +L + R Y+H H + M+ A+ Q+LS +Y +RFFPYY N+L G+DNEG
Sbjct: 78 WADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEG 137
Query: 124 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
KG VY+YD +G E+ Y + G+ TL+ P LDNQ+
Sbjct: 138 KGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQI 173
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 4 QHPAWSPYDNNGGTCVAIAGADYCVTAADTRMS-TGYSILSRDYSKIIKLADKCVMASSG 62
+ W+PY GG+ AI+G ++ + A+DTRM+ +IL+RD KI L D ++ +SG
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 63 FQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNE 122
F DV L+K+L +R Y+ + MS +LLS LYY+RFFPYY+ +L G+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 123 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
GKG V++YD +G ER+GYS+ G+ +I+PFLD Q+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI 196
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 3/157 (1%)
Query: 3 KQHPA-WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSR-DYSKIIKLADKCVMAS 60
K HP WSPY +NGGT AIAG++Y V ADTR++ + I +R D SK+ KL D+ +AS
Sbjct: 39 KGHPQHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLAS 98
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQM-SCPAMGQLLSNTLYYKRFFPYYSFNVLGGL 119
SG QAD LQ++L R YQ+ + ++ S A+ +L S LY +RFFPYY+FN++ G+
Sbjct: 99 SGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGI 158
Query: 120 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLD 156
D +G G Y+YD VGS E Y + GS S+ + P LD
Sbjct: 159 DEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD 195
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
++PY +NGGT + IAG D+ V A DTR T YSI SR K+ D VM+++GF AD
Sbjct: 21 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 80
Query: 68 KALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGC 126
AL K Y HN K++S + + + + LY KRFFPYY ++ GLD +GKG
Sbjct: 81 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 140
Query: 127 VYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
VY++D VGSYER + G+ ++LIMPFLDNQ+
Sbjct: 141 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV 173
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 94/152 (61%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+ PY NGGT VAIAG + + A DTR GY+I +R ++ ++ D V+ +SGF+AD
Sbjct: 6 FDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
AL K + R +Y H ++MS + ++ LY KRFFPYY + + G+D EGKG +
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEI 125
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
Y++D VGSYER + GS + I PFLDNQ+
Sbjct: 126 YSFDPVGSYEREWCRAGGSAANFITPFLDNQV 157
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+ PY++N GT + + D+ V A DTR S+ I SR+ SKI ++ D ++ +GF AD
Sbjct: 83 FDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGD-FLLTGTGFYADT 141
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
+ + + I Q++ + ++ + LLS LY KRFFPYYSF VL G + +GK V
Sbjct: 142 HEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYV 198
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDN 157
Y+YD +GS+ V GSG ++I P LD+
Sbjct: 199 YSYDPIGSFGSVTCVCSGSGRSMIQPLLDS 228
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLA 75
GT V I +D V AA+ R+S G ++S+ K+ ++ DK MAS+G AD++ L +++
Sbjct: 6 GTTVGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVE 65
Query: 76 ARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGS 135
A +Y+ N + +LLS LY +R FPYY+ V+GGLD EG +Y+ D +G+
Sbjct: 66 AEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGLDEEGS-HLYSLDPIGA 124
Query: 136 YERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165
Y + GSG+ L + +++ K L
Sbjct: 125 IIEDDYVALGSGTQLAISIVESNYKKDMSL 154
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++AL K+L
Sbjct: 8 GATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + K+ + AM +LLS ++ +RF P+Y+ ++GG+D EG + D +G
Sbjct: 68 KLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGVDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLD 156
S Y++ G+G+ L + LD
Sbjct: 127 SLIEDNYAALGTGAKLAVSLLD 148
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 83/145 (57%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I GA Y V AA+ R+S G I+S+ K+ K+ D +A +G AD++A+ K
Sbjct: 6 GTGATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISK 65
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A Y +++S A+ +LL+ LY +++P+ S ++GGL+ +G +Y D
Sbjct: 66 ILRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSETLVGGLEADGTAKLYVMDP 125
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDN 157
+GS Y++ GSG+ + + L+N
Sbjct: 126 LGSLIEDDYAAIGSGAPIAIGILEN 150
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++ L ++L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
+ Y+ + K+ + AM +LLS ++ +R P+Y+ ++GG+D EG + D +G
Sbjct: 68 KLNVMSYELEVRKKPTVRAMAKLLSIIMFSRRLLPFYAEVLVGGVDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLD 156
S Y++ G+G+ L + LD
Sbjct: 127 SLIEDNYAALGTGAKLAVSLLD 148
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++ L K+L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++ S +M +LLS ++ +RF P+++ ++GG+D EG + D +G
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGIDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDN 157
S Y++ G+G+ L + LD
Sbjct: 127 SLIEDNYAALGTGAKLAVAVLDT 149
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ RMS G I+S+ K+ K+ D+ MA +G AD++A+ + L
Sbjct: 5 GATAVGIKVKDGVVLAAERRMSYGGFIMSKAARKVFKVGDRMGMACAGLYADMQAIARAL 64
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++M + +LL LY + FP + V GG D+E + ++ D VG
Sbjct: 65 ENEIRYYEISNKRKMKVRSAARLLGLILYSNKLFPLMTETVFGGYDDEPR--IFVLDPVG 122
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165
S YS+ G+G+ L M LD + + L
Sbjct: 123 SVIEEKYSAVGTGAPLAMALLDKEYREDMSL 153
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I + V AA+ R+S G+ LS K+ + D+ +AS+G AD++ L K+L
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++ S AM +LLS ++ +RF P+++ ++GG+D+EG + D +G
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLD 156
S Y++ G+G+ L + +D
Sbjct: 127 SLIEDNYAALGTGAKLAIAIID 148
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
+G T V + +D+ + AAD R + G+ I SR KI+ L++ M SG AD + L
Sbjct: 23 RSGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSD 82
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L +Y+ + + S + LLSN L+ +FFPY ++GG D + + +YT D
Sbjct: 83 VLREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYDTQPR--LYTLDL 140
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKS 161
GS Y++ GSGS + L+ + +
Sbjct: 141 FGSITEDKYTATGSGSPIAYGVLEERYRE 169
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D V AAD R S G I +R+ +KI K+ + +A +G D+ L +L
Sbjct: 9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y Q K+MS A+ LL+N + ++FPY ++ ++GG D + K +Y+ D V
Sbjct: 69 LRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMV 126
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165
G Y++ GSG LD++ K L
Sbjct: 127 GGITEDKYATAGSGMEFAYSILDSEYKDNLTL 158
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
SP G T V + D V AAD R + G + S++ +K+ ++ D +A +G D+
Sbjct: 4 SPSAMKGTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDIL 63
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
+L +LL A +Y+ + ++MS A+ L+SN L+ R PY+++ ++GG D + + +Y
Sbjct: 64 SLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAWFLIGGYDVKPR--LY 121
Query: 129 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159
+ DA G + + GSG + L+
Sbjct: 122 SIDAAGGVTEERFIAAGSGMEFALALLEENF 152
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
W+ G T V I D V AD R S G ++S+ +KI ++ D +A +G D+
Sbjct: 2 WALDKIKGTTTVGIVCKDGVVLTADRRASLGNMVISKGVTKIFQVDDHLALAGAGAVGDI 61
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
+L + L A +Y+ + K+MS A+ L SN L +++ PY+ + ++GG D K +
Sbjct: 62 LSLVRALRAESKLYRAKVGKEMSTKALATLTSNILSGRKYLPYFGWFLIGGYDE--KPSL 119
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 158
Y+ D G Y S GSG LDN+
Sbjct: 120 YSIDMAGGITEDKYVSAGSGMEFAYSILDNE 150
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD+++L +++
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIV 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + K+ + +M +LLS ++ +R+ P+++ ++GG+D EG + D +G
Sbjct: 68 KINAKAYELETRKKPTVRSMAKLLSVIMFSRRYMPFFAEVLVGGVDEEGSHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDN 157
S Y++ G+G+ L + LD
Sbjct: 127 SLIEDNYAALGTGAKLAISVLDT 149
>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1
Length = 204
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 69/121 (57%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
NGG+CVA+AG + A+D R+ L+ ++ K+ + DK + +G DV+ L +L
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
+ +Y+ + +Q+ L+S+TLY KRF PY+SF V+ G+ N+ + +D++
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSI 126
Query: 134 G 134
G
Sbjct: 127 G 127
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D V AAD R S G +LS++ +K+ ++ D +A +G D+ +L +L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRL 65
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y+ + +++S A+ L SN L+ RF PY+ + ++ G D K +Y+ D
Sbjct: 66 LRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGWFLIAGYDE--KPALYSLDMA 123
Query: 134 GSYERVGYSSQGSGSTLIMPFLDN 157
G +++ GSG L L++
Sbjct: 124 GGVTEDKFTAAGSGMELAFAVLED 147
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
Length = 204
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
S ++ NG VA+ G + A+D R+ ++ D+ +I K+ DK + SG DV+
Sbjct: 2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQ 61
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
L + A RH +YQ + + M L+S LY KRF PY+ V+ GL + K +
Sbjct: 62 TLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFIC 121
Query: 129 TYDAVGSYE 137
T D++G+ E
Sbjct: 122 TMDSIGAKE 130
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D+ V AAD R + GY + + KIIK+ D M ++G AD + L +
Sbjct: 14 KGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEW 73
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
LA Y+ + ++MS A Q LS L+ +F+PY +LGG D + + +Y D
Sbjct: 74 LANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYDTQPR--LYNIDWF 131
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQ 158
GS Y + GSGS + +++Q
Sbjct: 132 GSVTEEKYVATGSGSPTAIGVIEDQ 156
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D V AAD R S G +LS +K+ ++ D +A +G D+ +L +L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSERVTKVFQIDDHLAIAGAGTVGDILSLVRL 65
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y+ + +++MS A+ L SN L+ R F Y ++ ++GG D+ + +Y+ DA
Sbjct: 66 LRAEAKLYRAKVSREMSVKALATLTSNILHSGRGFAYMAWFLVGGYDSAPR--LYSIDAA 123
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165
G +++ GSG L+ + PL
Sbjct: 124 GGVTEDRFTAAGSGMEFAFSVLEENYRDGIPL 155
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1
PE=1 SV=2
Length = 204
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
S ++ NG VA+ G + A+D R+ ++ D+ +I K+ D+ + SG DV+
Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQ 61
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
L + L RH +YQ + + M L+S LY KRF PY V+ GL ++ K +
Sbjct: 62 TLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFIC 121
Query: 129 TYDAVGSYE 137
T D++G+ E
Sbjct: 122 TMDSIGAKE 130
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3
PE=3 SV=1
Length = 205
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
NGG C+ + G + A+D R +S D+ K+ ++ DKC + SG D + L +
Sbjct: 7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQK 66
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
L RH +Y+ + + MS + LL+N LY KRF PY++ ++ GL+
Sbjct: 67 LVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + + V AADTR S G I +++ +KI K+ + +A +G D+ L +LL
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A +Y+ K+MS A+ LL+N L ++FPY + ++GG D + + +++ D VG
Sbjct: 70 KAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVG 127
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSP 162
Y++ GSG LD++ +
Sbjct: 128 GITEDNYAAAGSGMEFAYSILDSEYREE 155
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T + I D V AAD RMS G ILSR++ KI + D+ +A +G D+ L +++
Sbjct: 5 GATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDMGGLVRIV 64
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
+ + + K + + + LS+ LY +FFP+ ++GG+D G+ +Y D +G
Sbjct: 65 EGQMRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDPGGEPKLYVLDPLG 124
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLK 160
S Y + G+G+T L++ K
Sbjct: 125 SIIEEDYVAAGTGATTAFGLLEHVYK 150
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2
PE=1 SV=1
Length = 204
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
S ++ NG VA+ G + A+D R+ ++ D+ +I K+ D + SG DV+
Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQ 61
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
L + L RH +YQ + + M L+S LY KRF P+ V+ GL ++ K +
Sbjct: 62 TLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFIC 121
Query: 129 TYDAVGSYE 137
T D++G+ E
Sbjct: 122 TMDSIGAKE 130
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica
GN=PBC1 PE=2 SV=1
Length = 204
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
S ++ NG VA+ G + A+D R+ ++ D+ ++ K+ DK + SG D +
Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQ 61
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
L + L RH +YQ + + M L+S LY KRF PY+ V+ GL + + +
Sbjct: 62 TLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFIC 121
Query: 129 TYDAVGSYE 137
T D +G+ E
Sbjct: 122 TMDCIGAKE 130
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I +D V AAD R S G + +++ +KI K+ + +A +G D+ L +L
Sbjct: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y Q K+MS A+ LL+N L R PY ++ ++GG D + + +Y+ D +
Sbjct: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMM 126
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKS 161
G Y + GSG LD++ +
Sbjct: 127 GGITEDKYVAAGSGMEFAYSVLDSEYRE 154
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I V AAD R + G I+ + KI+K++D M ++G AD + L +
Sbjct: 12 KGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADV 71
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L Y+ H K+MS A LSN L+ RF+PY ++GG D + +Y+ D
Sbjct: 72 LRMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFDTAPR--LYSLDWF 129
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQ 158
G+ + GSGS + + ++ +
Sbjct: 130 GTVAEEEFLVTGSGSPMAVGVIEAE 154
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 21 IAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI 80
I D V AADT+ S G+ + + + KII + D+ + ++G DV+AL ++L A
Sbjct: 13 IKAKDGIVLAADTQASLGHMVETLNIRKIIPITDRIAITTAGSVGDVQALARMLEAEARY 72
Query: 81 YQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG 140
YQ K MS AM LLSN L ++FPY +LGG E + D +G
Sbjct: 73 YQFTWGKPMSTKAMANLLSNILNGNKWFPYLVQIILGGYVEE--PTLANLDPLGGLIFDD 130
Query: 141 YSSQGSGSTLIMPFLDNQLK 160
Y++ GSGS + L++ K
Sbjct: 131 YTATGSGSPFAIAVLEDGYK 150
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V + D V A + R + G I SR KI ++AD+ M ++G D + L +L
Sbjct: 11 KGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLARL 70
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
++ +Y+ + ++ + A+ LLSN L R+FPY+ ++GG+D G +Y+ D +
Sbjct: 71 ISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDKRGP-SIYSIDLL 129
Query: 134 -GSYERVGYSSQGSGS 148
G+ E + + GSGS
Sbjct: 130 GGAIEEIDIVATGSGS 145
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I + V AADT+ S G + + + KI+ + D+ + ++G DV+AL +
Sbjct: 5 KTGTTTVGIKVKEGVVLAADTQASLGNMVETLNIRKILPITDRIAITTAGSVGDVQALAR 64
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A+ YQ + M+ AM LLSN L ++FPY ++GG + K + + DA
Sbjct: 65 MLEAQARYYQFTWGRPMTTRAMANLLSNILNENKWFPYMVQIIIGGYVD--KPELASVDA 122
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDN 157
+G Y++ GSGS + +++
Sbjct: 123 LGGLVFEKYTATGSGSPFAIAIIED 147
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V + A + A + R + GY I S+ K+ ++AD+ M +G D + L ++
Sbjct: 10 TGTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARI 69
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
+ +YQ + +++++ A LLSN L R+FPYY ++GG+D+ G VY+ DA+
Sbjct: 70 ITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDDHGP-SVYSVDAM 128
Query: 134 -GSYERVGYSSQGSGSTLIMPFLDNQLK 160
G+ + S GSGS + L+++ +
Sbjct: 129 GGATKEEDIVSTGSGSPMAYGVLEDRYR 156
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+Y+ + N+ M+ + L+SN L R++P ++GG+D G G +Y+ DA+
Sbjct: 69 NVESQLYKMRRNESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPG-IYSLDALG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKS 161
GS E S+ GSGS + L++Q +
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRE 155
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I D V AADT+ S + + + + KI+ + D+ + ++G D++AL +
Sbjct: 4 KTGTTTVGIKLKDGVVLAADTQASLDHMVETLNIKKILPITDRIAITTAGSVGDLQALAR 63
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A YQ K M+ AM LLSN L ++FPY ++GG E + + D
Sbjct: 64 MLEAEAKYYQFTWGKPMTAKAMANLLSNILNESKWFPYMVQIIIGGYVEE--PTLASLDP 121
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKS 161
+G Y++ GSGS + L++ K
Sbjct: 122 LGGLIFDNYTTTGSGSPFAIAILEDGYKE 150
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G+ I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+ +Y+ + N+ M+ + L+SN L R++P ++GG+D G +Y+ DA+
Sbjct: 69 SVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDAMG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKS 161
GS E S+ GSGS + L++Q K
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYKE 155
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G+ I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+ +Y+ + ++ M+ + L+SN L R++P ++GG+D G G +Y+ DA+
Sbjct: 69 SVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKS 161
GS E S+ GSGS + L++Q +
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRE 155
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 17 TCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAA 76
T + I D + AA+ R+S G +LSR K+ K+ + +A +G D++ L +L+
Sbjct: 7 TALGIKLNDGIILAAERRLSYGGFVLSRSAKKVFKIG-RFGIAGAGIMGDIQTLTRLMNV 65
Query: 77 RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY 136
Y+ +NK +S A +LLS LY ++ P+ S + GG+D+EG ++ D +GS
Sbjct: 66 EIKYYEMYNNKPISVKAAAKLLSVILYQYKWTPFISELLFGGVDDEGP-KLFVLDPIGSL 124
Query: 137 ERVGYSSQGSGSTLIMPFLDNQ 158
Y++ GSG+ + + L+++
Sbjct: 125 IEDNYAAVGSGARVAIGVLESE 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,857,891
Number of Sequences: 539616
Number of extensions: 2388918
Number of successful extensions: 4783
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 4504
Number of HSP's gapped (non-prelim): 271
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)