Query 030879
Match_columns 170
No_of_seqs 118 out of 1096
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:57:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.1E-41 2.3E-46 264.2 19.7 153 8-160 1-153 (212)
2 cd03759 proteasome_beta_type_3 100.0 5.1E-41 1.1E-45 257.3 20.3 152 14-165 2-154 (195)
3 COG0638 PRE1 20S proteasome, a 100.0 1.7E-40 3.7E-45 261.1 17.9 153 12-165 27-181 (236)
4 cd03761 proteasome_beta_type_5 100.0 2.1E-39 4.6E-44 247.0 20.1 149 16-165 1-149 (188)
5 cd03760 proteasome_beta_type_4 100.0 1.2E-39 2.7E-44 249.9 18.8 152 14-165 1-157 (197)
6 cd03758 proteasome_beta_type_2 100.0 2.7E-39 5.9E-44 247.4 20.5 151 15-165 1-153 (193)
7 TIGR03634 arc_protsome_B prote 100.0 4.6E-39 9.9E-44 244.4 19.0 150 15-165 1-150 (185)
8 cd03755 proteasome_alpha_type_ 100.0 1.1E-38 2.3E-43 246.6 18.7 154 11-165 23-180 (207)
9 cd03764 proteasome_beta_archea 100.0 7.3E-38 1.6E-42 238.4 20.1 149 16-165 1-149 (188)
10 cd03752 proteasome_alpha_type_ 100.0 3.7E-38 8.1E-43 244.5 18.6 155 11-165 25-183 (213)
11 cd03751 proteasome_alpha_type_ 100.0 2.8E-38 6.1E-43 245.0 17.9 153 11-165 26-182 (212)
12 cd03754 proteasome_alpha_type_ 100.0 1.8E-38 3.8E-43 246.6 16.0 150 13-163 27-180 (215)
13 cd01912 proteasome_beta protea 100.0 1.4E-37 3E-42 236.7 20.4 150 16-165 1-150 (189)
14 cd03750 proteasome_alpha_type_ 100.0 2.4E-38 5.3E-43 247.7 16.6 153 11-165 23-179 (227)
15 TIGR03690 20S_bact_beta protea 100.0 1E-37 2.2E-42 243.0 19.9 152 14-165 1-157 (219)
16 PTZ00488 Proteasome subunit be 100.0 1.5E-37 3.3E-42 245.7 20.4 153 12-165 36-188 (247)
17 cd03762 proteasome_beta_type_6 100.0 1.9E-37 4.1E-42 236.1 20.0 149 16-165 1-149 (188)
18 cd03749 proteasome_alpha_type_ 100.0 1.7E-37 3.6E-42 240.6 17.4 147 11-161 23-173 (211)
19 cd03763 proteasome_beta_type_7 100.0 7E-37 1.5E-41 233.3 19.7 148 16-165 1-148 (189)
20 cd03756 proteasome_alpha_arche 100.0 6.2E-37 1.3E-41 237.3 17.8 154 10-165 23-180 (211)
21 PTZ00246 proteasome subunit al 100.0 5.9E-37 1.3E-41 243.4 18.0 155 11-165 27-185 (253)
22 cd01911 proteasome_alpha prote 100.0 6.9E-37 1.5E-41 236.7 17.8 154 11-165 23-180 (209)
23 KOG0179 20S proteasome, regula 100.0 5.3E-37 1.2E-41 229.9 16.3 166 1-166 15-180 (235)
24 cd03753 proteasome_alpha_type_ 100.0 7.1E-37 1.5E-41 237.3 17.4 153 11-165 23-184 (213)
25 cd01906 proteasome_protease_Hs 100.0 2.3E-36 5E-41 228.2 19.3 149 16-164 1-151 (182)
26 PF00227 Proteasome: Proteasom 100.0 1.3E-36 2.8E-41 231.0 17.7 154 12-165 1-160 (190)
27 PRK03996 proteasome subunit al 100.0 1.5E-36 3.2E-41 239.5 17.5 153 11-165 32-188 (241)
28 TIGR03633 arc_protsome_A prote 100.0 3E-36 6.4E-41 235.4 17.9 153 11-165 25-181 (224)
29 KOG0176 20S proteasome, regula 100.0 3.1E-37 6.7E-42 229.5 11.5 154 11-166 30-192 (241)
30 cd03765 proteasome_beta_bacter 100.0 3.3E-35 7.2E-40 230.5 17.8 148 16-165 1-167 (236)
31 TIGR03691 20S_bact_alpha prote 100.0 4.9E-34 1.1E-38 223.3 17.9 147 11-165 23-175 (228)
32 KOG0184 20S proteasome, regula 100.0 5.1E-34 1.1E-38 215.5 14.3 150 10-161 29-182 (254)
33 KOG0177 20S proteasome, regula 100.0 2.3E-32 4.9E-37 202.1 13.2 151 15-165 1-153 (200)
34 KOG0181 20S proteasome, regula 100.0 6.6E-33 1.4E-37 205.9 10.3 155 11-167 28-186 (233)
35 KOG0183 20S proteasome, regula 100.0 8.1E-33 1.8E-37 208.1 10.7 152 11-163 26-181 (249)
36 KOG0178 20S proteasome, regula 100.0 2.3E-32 5E-37 205.2 11.4 156 11-166 27-186 (249)
37 KOG0180 20S proteasome, regula 100.0 2.4E-31 5.3E-36 194.1 15.0 157 9-165 2-159 (204)
38 KOG0174 20S proteasome, regula 100.0 6.6E-31 1.4E-35 195.1 11.2 153 12-165 16-168 (224)
39 PRK05456 ATP-dependent proteas 100.0 2.1E-29 4.5E-34 189.1 17.0 138 15-163 1-143 (172)
40 KOG0863 20S proteasome, regula 100.0 1.7E-30 3.8E-35 197.3 11.1 151 11-165 28-182 (264)
41 KOG0185 20S proteasome, regula 100.0 3.4E-30 7.3E-35 196.2 11.6 161 3-164 30-193 (256)
42 KOG0175 20S proteasome, regula 100.0 6.6E-30 1.4E-34 196.8 12.6 152 13-165 69-220 (285)
43 KOG0173 20S proteasome, regula 100.0 5.6E-30 1.2E-34 196.7 11.6 160 5-166 27-186 (271)
44 cd01913 protease_HslV Protease 100.0 1.2E-28 2.6E-33 184.2 16.6 138 16-164 1-143 (171)
45 cd01901 Ntn_hydrolase The Ntn 100.0 1.1E-27 2.4E-32 175.7 19.2 148 16-164 1-150 (164)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.9E-28 6.3E-33 182.1 15.7 138 16-164 1-143 (171)
47 KOG0182 20S proteasome, regula 99.9 3E-27 6.5E-32 177.8 13.4 152 12-164 33-188 (246)
48 COG5405 HslV ATP-dependent pro 99.7 4.2E-16 9.1E-21 113.3 8.0 140 13-162 2-144 (178)
49 COG3484 Predicted proteasome-t 99.1 1.1E-09 2.4E-14 82.9 9.8 151 15-167 1-170 (255)
50 PF09894 DUF2121: Uncharacteri 79.0 1.6 3.4E-05 33.4 2.1 20 15-34 1-20 (194)
51 KOG3361 Iron binding protein i 51.9 11 0.00024 27.2 1.8 37 128-164 71-107 (157)
52 COG4079 Uncharacterized protei 48.3 14 0.0003 29.5 2.0 56 15-101 1-56 (293)
53 PF11211 DUF2997: Protein of u 45.4 28 0.0006 20.4 2.6 34 128-161 3-36 (48)
54 PF02757 YLP: YLP motif; Inte 39.2 22 0.00047 13.5 0.9 8 163-170 2-9 (9)
55 PF04539 Sigma70_r3: Sigma-70 35.4 73 0.0016 19.8 3.7 30 72-101 4-33 (78)
56 PF12481 DUF3700: Aluminium in 31.2 2.6E+02 0.0057 22.0 9.0 50 17-72 44-93 (228)
57 COG4537 ComGC Competence prote 28.4 1.3E+02 0.0028 20.7 4.0 27 68-94 50-77 (107)
58 PF12120 Arr-ms: Rifampin ADP- 25.1 42 0.00092 22.7 1.2 19 122-140 52-70 (100)
59 PF01242 PTPS: 6-pyruvoyl tetr 22.1 1.6E+02 0.0035 20.2 3.8 42 61-102 43-94 (123)
60 COG2096 cob(I)alamin adenosylt 21.8 2.2E+02 0.0048 21.7 4.6 38 67-104 125-162 (184)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-41 Score=264.17 Aligned_cols=153 Identities=63% Similarity=1.031 Sum_probs=148.4
Q ss_pred ccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 030879 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (170)
Q Consensus 8 ~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (170)
|+|++++|+|+|||+++||||||+|++.+++.++..++.+|||+|++++++++||+.+|++.+.++++.+++.|+..+++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 79999999999999999999999999999998788889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCC
Q 030879 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (170)
+++++.+++++++++|++|.+||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 153 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVG 153 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHH
Confidence 9999999999999999988889999999999998778999999999999999999999999999999999986
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-41 Score=257.31 Aligned_cols=152 Identities=28% Similarity=0.490 Sum_probs=144.6
Q ss_pred CCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 030879 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (170)
Q Consensus 14 ~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
+|+|+|||+++||||||+|++.+++..+..++.+|||+|++++++++||+.+|++.+.+++|.+++.|+.+++++|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987776778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeC-eEEEccChhhhHHHHhccCCCCCCC
Q 030879 94 MGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 94 la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+|++|++++|++|.+||++++||||||++++|+||++||+|++.++. ++|+|+|+++++++||+.|++++..
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 154 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEP 154 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCH
Confidence 99999999999888999999999999988789999999999998777 9999999999999999999998654
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=261.06 Aligned_cols=153 Identities=33% Similarity=0.463 Sum_probs=145.7
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
...|+|+|||+++||||||+|+|.+++.++..++.+|||+|+|||+|++||+.+|++.++++++.+++.|++.+++++++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34579999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC--CCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 92 PAMGQLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 92 ~~la~~l~~~~~~~r~--~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+++.+++++|..+. |||++++||||+|+ ++|+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~ 181 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSL 181 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCH
Confidence 9999999999987776 89999999999998 7799999999999999999999999999999999999988654
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-39 Score=247.03 Aligned_cols=149 Identities=24% Similarity=0.284 Sum_probs=142.6
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|++.+++.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+..++++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++++|..|..||++++||||||++ +|+||++||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~-g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 149 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKT-GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSV 149 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCH
Confidence 999999998887899999999999964 599999999999999999999999999999999999998653
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-39 Score=249.95 Aligned_cols=152 Identities=26% Similarity=0.339 Sum_probs=142.8
Q ss_pred CCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHH-HHHHhcCCCCCHH
Q 030879 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCP 92 (170)
Q Consensus 14 ~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 92 (170)
.|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++ .++..++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998889998999999999999999999999999999999999986 5767899999999
Q ss_pred HHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC--CCCC
Q 030879 93 AMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS--PSPL 165 (170)
Q Consensus 93 ~la~~l~~~~~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~~~ 165 (170)
.+++++++++|++| .|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ ++..
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 99999999999876 6899999999999976779999999999999999999999999999999999998 6543
No 6
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-39 Score=247.41 Aligned_cols=151 Identities=26% Similarity=0.372 Sum_probs=141.7
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
++|+|||+++||||||+|++.+++.++.+++.+|||+|++++++++||+.+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 ~~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 80 (193)
T cd03758 1 METLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 37999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 95 GQLLSNTLYY-KR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 95 a~~l~~~~~~-~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++++++++|. .| .|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 81 a~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 153 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTV 153 (193)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCH
Confidence 9999999853 23 36999999999999767799999999999999999999999999999999999987653
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.6e-39 Score=244.36 Aligned_cols=150 Identities=32% Similarity=0.522 Sum_probs=144.0
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 95 a~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++++++++|..+.|||++++||||+|+++ |+||.+||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 150 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSV 150 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCH
Confidence 99999999888889999999999999765 99999999999999999999999999999999999988754
No 8
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-38 Score=246.55 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=143.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.+.. ++.++..+||++|++++++++||+.+|++.+.++++.+++.|+..++++|+
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999997754 666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.++.++ |+++ .|||++++||+|||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++|..
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 180 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTR 180 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCH
Confidence 999999999999 6665 68999999999999877799999999999999999999999999999999999998753
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-38 Score=238.38 Aligned_cols=149 Identities=33% Similarity=0.500 Sum_probs=142.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|++.++|.++.+++.+||++|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+++++|..+.|||++++||||+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~ 149 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTV 149 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCH
Confidence 99999999888899999999999996 5699999999999999999999999999999999999998654
No 10
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-38 Score=244.47 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=144.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.+++..+.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++|+
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 55789999999999999999999999887766679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhh--cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~--r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.|+..+ |++ +.|||++++||+|||++.+|+||.+||+|++.+++++|+|+++++++++||+.|++++..
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ 183 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTL 183 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCH
Confidence 999999999886 543 358999999999999766699999999999999999999999999999999999998754
No 11
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-38 Score=245.04 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=141.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.++ .++..++.+|||+|++++++++||+.+|++.+.+++|.+++.|+..++++++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999986 4666678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.++++|++++ |+++ .|||++++||+|||+++ |+||++||+|++.+++++|+|+|+.+++++||+.|++++..
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~g-p~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~ 182 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDG-PQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTC 182 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCc-CEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCH
Confidence 999999999987 4443 58999999999999654 99999999999999999999999999999999999998753
No 12
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-38 Score=246.64 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=139.6
Q ss_pred cCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 030879 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (170)
Q Consensus 13 ~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (170)
++|+|+|||+++||||||+|++.+.+ ++..+..+|||+|+++++|++||+.+|++.+.+++|.++..|+++++++|+++
T Consensus 27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (215)
T cd03754 27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD 105 (215)
T ss_pred cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35889999999999999999998875 55566889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCC
Q 030879 93 AMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (170)
Q Consensus 93 ~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 163 (170)
.+|+.+++++ |+++ .|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++++
T Consensus 106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~ 180 (215)
T cd03754 106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKP 180 (215)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhcccc
Confidence 9999999974 7665 479999999999997667999999999999999999999999999999999999974
No 13
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-37 Score=236.69 Aligned_cols=150 Identities=37% Similarity=0.572 Sum_probs=143.4
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|++.+++..+..++.+|||+|++++++++||+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++++|..+.+||++++||||+|++++|+||++||+|++.+++++++|+++++++++||+.|++++..
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~ 150 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTL 150 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCH
Confidence 9999999887768999999999999767799999999999999999999999999999999999998653
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-38 Score=247.67 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=142.9
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.++ .++.+++.+||++|+++++|++||+.+|++.+.++++.+++.|+..++++++
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456899999999999999999999985 5777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.|++++ |+++ .|||++++||+|||++ +|+||++||+|++.+++++|+|+|+++++++||+.|+++|..
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 179 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLEL 179 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCH
Confidence 999999999988 5555 6899999999999965 499999999999999999999999999999999999998754
No 15
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1e-37 Score=243.00 Aligned_cols=152 Identities=23% Similarity=0.316 Sum_probs=141.7
Q ss_pred CCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 030879 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (170)
Q Consensus 14 ~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
+|+|+|||+++||||||+|++.+++.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+.+++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCCCeeEEEEEEEEcCC-CCeEEEEECCCCc-eeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 94 MGQLLSNTLYYK---RFFPYYSFNVLGGLDNE-GKGCVYTYDAVGS-YERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 94 la~~l~~~~~~~---r~~P~~v~~lv~G~d~~-g~p~L~~id~~G~-~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++.|+++++.. +.|||++++||||||++ ++|+||++||+|. +.+++++|+|+|+++++++||+.|++++..
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDE 157 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCH
Confidence 999999998643 26899999999999964 6799999999995 677789999999999999999999998653
No 16
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.5e-37 Score=245.66 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=143.8
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
..+|+|+||||++||||||+|++.+++.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+.+++++|++
T Consensus 36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv 115 (247)
T PTZ00488 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV 115 (247)
T ss_pred cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 92 ~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+|++|++++|..|..|+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|++++..
T Consensus 116 ~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~ 188 (247)
T PTZ00488 116 AAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLND 188 (247)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCH
Confidence 99999999999988755666778999999655 99999999999999999999999999999999999998643
No 17
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-37 Score=236.08 Aligned_cols=149 Identities=25% Similarity=0.275 Sum_probs=141.7
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|++.++|.++.+++.+|||+|++++++++||+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++++|..| +||++++||||+|++.+|+||++||+|++.+++++++|+|++++++.||+.|++++..
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~ 149 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTL 149 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCH
Confidence 99999998776 7999999999999755699999999999999999999999999999999999998754
No 18
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-37 Score=240.57 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=135.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.+++ ..+..+|||+|++++++++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999998765 3457799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
++.+++.++..++ +++ .|||+|++||+|||++| |+||++||+|++.+++++|+|+|+++++++||+.|++
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~ 173 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE 173 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc
Confidence 9999999999873 343 58999999999999655 9999999999999999999999999999999999995
No 19
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-37 Score=233.28 Aligned_cols=148 Identities=23% Similarity=0.300 Sum_probs=140.3
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|+|.+++.++..++.+|||+|+++++++++|+.+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++.+|..+ .||+|++||||||+++ |+||.+||+|++.+++++++|+++++++++||+.|++++..
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~ 148 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTE 148 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCH
Confidence 99999987654 5999999999999665 99999999999999999999999999999999999998754
No 20
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-37 Score=237.27 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=142.2
Q ss_pred ccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 030879 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (170)
Q Consensus 10 ~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (170)
.++++|+|+|||+++||||||+|++.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|+.++++++
T Consensus 23 ~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 101 (211)
T cd03756 23 EAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPI 101 (211)
T ss_pred HHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999999999999985 466778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhh--cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 90 SCPAMGQLLSNTL--YYK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 90 ~~~~la~~l~~~~--~~~--r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++.+++.++..+ |.+ +.|||++++||+|||+. +|+||++||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 102 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~ 180 (211)
T cd03756 102 DVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSL 180 (211)
T ss_pred CHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCH
Confidence 9999999999987 444 35899999999999965 599999999999999999999999999999999999998754
No 21
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.9e-37 Score=243.37 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=143.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++++++|+.+|++.+.+.+|.+++.|+..++++++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999987776667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhh--cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~--r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.++..+ |++ +.|||+|++||+|||++++|+||++||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 185 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTL 185 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCH
Confidence 999999999886 444 368999999999999766699999999999999999999999999999999999998654
No 22
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=6.9e-37 Score=236.65 Aligned_cols=154 Identities=23% Similarity=0.330 Sum_probs=143.3
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++.+|+|+||++++||||||+|++.+.+ ++..++.+||++|++++++++||+.+|++.+.+.++.++..|+..++++++
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4468999999999999999999999875 556688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+|+++++++ |+++ .|||++++||+|+|++++|+||.+||.|++.+++++++|+|+++++++||+.|++++..
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~ 180 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTL 180 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCH
Confidence 999999999988 5543 57999999999999876799999999999999999999999999999999999998754
No 23
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=229.85 Aligned_cols=166 Identities=57% Similarity=0.917 Sum_probs=161.6
Q ss_pred CCCCCCCccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHH
Q 030879 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (170)
++++|.-|+|+..+|+|+|+|.+.|+.|+|+|+|.+++..|.++..+|||+++|+++++.||+++|...|.+.++...+.
T Consensus 15 ~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 15 KTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ 94 (235)
T ss_pred CccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCC
Q 030879 81 YQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (170)
|+.++.+.|++...|++|+..+|.+|+.||.+..+|+|+|++|++.+|++||-|++....+.|-|+++.+++|+|++...
T Consensus 95 Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~ 174 (235)
T KOG0179|consen 95 YEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIG 174 (235)
T ss_pred HhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 030879 161 SPSPLL 166 (170)
Q Consensus 161 ~~~~~~ 166 (170)
..++.+
T Consensus 175 ~kn~~~ 180 (235)
T KOG0179|consen 175 HKNQNL 180 (235)
T ss_pred CcCccc
Confidence 888764
No 24
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-37 Score=237.27 Aligned_cols=153 Identities=21% Similarity=0.267 Sum_probs=140.9
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.+++ ++..++.+||++|+++++|++||+.+|++.+.++++.+++.|+..++++++
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999999865 566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc-------CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 91 CPAMGQLLSNTLYY--KR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 91 ~~~la~~l~~~~~~--~r-------~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
++.+++.++++++. ++ .|||++++||||||+.+ |+||.+||+|++.+++++++|+++++++++||+.|++
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~g-p~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~ 180 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENG-PQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHK 180 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCC-CEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccC
Confidence 99999999999843 32 38999999999999654 9999999999999999999999999999999999999
Q ss_pred CCCC
Q 030879 162 PSPL 165 (170)
Q Consensus 162 ~~~~ 165 (170)
++..
T Consensus 181 ~ls~ 184 (213)
T cd03753 181 DMTL 184 (213)
T ss_pred CCCH
Confidence 8653
No 25
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.3e-36 Score=228.20 Aligned_cols=149 Identities=30% Similarity=0.409 Sum_probs=141.8
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|++.+++..+..++.+|||+|+++++++++|..+|++.+.++++.++..|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r~--~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++++++|..+. |||++++||||+|++++|+||.+||+|++.+++++++|+|+++++++||+.|++++.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s 151 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMT 151 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCC
Confidence 999999987764 899999999999976679999999999999999999999999999999999999874
No 26
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.3e-36 Score=231.00 Aligned_cols=154 Identities=31% Similarity=0.453 Sum_probs=140.6
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecC-cCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRD-YSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
+++|+|+|||+++||||||+|++.+++..+..+. .+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3589999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeee-CeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL----YYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~----~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.++..+ +..+.||+++++|+||||++++|+||.+||+|++.++ +++++|+|+++++++||+.|++++..
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 997777666665 3344689999999999998888999999999999999 69999999999999999999888753
No 27
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.5e-36 Score=239.48 Aligned_cols=153 Identities=23% Similarity=0.341 Sum_probs=141.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|++.++ .++..++.+||++|++++++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 457899999999999999999999985 4667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.++..+ |+++ .|||++++||||||+.+ |+||.+||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 188 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSL 188 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCc-CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCH
Confidence 999999999998 4443 58999999999999654 99999999999999999999999999999999999998653
No 28
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3e-36 Score=235.42 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=141.9
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.++ .++..++.+||++|++++++++||+.+|++.+.++++.++..|+..++++++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999985 4677789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++++++++ |.++ .|||++++||||+|+ ++|+||++||.|++.+++++++|+|+++++++||+.|++++..
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~ 181 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSL 181 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCH
Confidence 999999999997 4443 589999999999995 5599999999999999999999999999999999999998754
No 29
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=229.49 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=143.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
+++.|+|.|||+.++|||||++||.+++ ++.+++..||++|++||+|++||+.+|+++++++.|.++++|++.|+++++
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~ 108 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPIS 108 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCccc
Confidence 4567999999999999999999999987 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhh-----c--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 91 CPAMGQLLSNTL--YYK-----R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~-----r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
++.+.+.++++. |.. + .|||||++|+||+|.+| |+||+.||+|++..+++-|||+|++-+.+.|++.|++
T Consensus 109 VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~ 187 (241)
T KOG0176|consen 109 VESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHK 187 (241)
T ss_pred HHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHhh
Confidence 999999999987 321 1 48999999999999655 9999999999999999999999999999999999999
Q ss_pred CCCCC
Q 030879 162 PSPLL 166 (170)
Q Consensus 162 ~~~~~ 166 (170)
++-+.
T Consensus 188 ~ltL~ 192 (241)
T KOG0176|consen 188 DLTLK 192 (241)
T ss_pred cccHH
Confidence 87654
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-35 Score=230.49 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=132.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEec----CceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC-CCC
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMS 90 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (170)
|-+|||+++||||||+|+|.+++ ++..++.+||++|+ ++|+|+.||+.+|++.+.+++|.+++.|++.+++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 46899999999999999999877 44445789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHh---h-------cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeee----CeEEEccChhhhHHHHh
Q 030879 91 CPAMGQLLSNTLYY---K-------RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLD 156 (170)
Q Consensus 91 ~~~la~~l~~~~~~---~-------r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~----~~~aiG~g~~~~~~~Le 156 (170)
++.+|++++++++. + +.|||+|++||||||++.+|+||++||+|++.++ +|+|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998633 1 1479999999999996666999999999999998 6799996 799999999
Q ss_pred ccCCCCCCC
Q 030879 157 NQLKSPSPL 165 (170)
Q Consensus 157 ~~~~~~~~~ 165 (170)
+.|+++|..
T Consensus 159 k~yk~~ms~ 167 (236)
T cd03765 159 RVITPDTSL 167 (236)
T ss_pred HhcCCCCCH
Confidence 999998754
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=4.9e-34 Score=223.28 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=131.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (170)
++++|+|+|||+++||||||+|++. ++.+|||+|+++|+|++||+.+|++.++++++.+++.|++.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 4578999999999999999999972 3578999999999999999999999999999999999999997 789
Q ss_pred CHHHHHHHHHHHHHhh---cCCCeeEEEEEEEEcC-CCCeEEEEECCCCceeeeC-eEEEccChhhhHHHHhccCCCCCC
Q 030879 90 SCPAMGQLLSNTLYYK---RFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 90 ~~~~la~~l~~~~~~~---r~~P~~v~~lv~G~d~-~g~p~L~~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++.+|+.++..++.. +.|||+|++|++|||+ +.+|+||++||+|++.+++ ++|+|+|++.++++||+.|++++.
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms 174 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLS 174 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCC
Confidence 9999998877766321 3589999999999985 4569999999999999976 899999999999999999999865
Q ss_pred C
Q 030879 165 L 165 (170)
Q Consensus 165 ~ 165 (170)
.
T Consensus 175 ~ 175 (228)
T TIGR03691 175 L 175 (228)
T ss_pred H
Confidence 3
No 32
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-34 Score=215.55 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=139.2
Q ss_pred ccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 030879 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (170)
Q Consensus 10 ~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (170)
.++++++|+|||||||||||+++|..+++ +..+...+|||.|+++|+|+++|+.+|.+.+.+++|.++..|+.+++.++
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999987 67789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 90 ~~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
|.+.+++.+..++ |+.. .||||+++++++||.+| |+||.+||+|....++.+|+|.|.+.|++.||++--.
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g-~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~ 182 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG-PQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKID 182 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeCCC-ceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccc
Confidence 9999999999998 3332 58999999999999655 9999999999999999999999999999999996543
No 33
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-32 Score=202.09 Aligned_cols=151 Identities=25% Similarity=0.353 Sum_probs=144.0
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|.+++||++.|+|+||+|+...++.+++.++.+|++++++++.|+++|..+|..++.+++.+++++|+.++|.+++|+.+
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 95 GQLLSNTLYY-KR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 95 a~~l~~~~~~-~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
|++++..+.+ .| .+||.|++|+||||++.+|.||++|..|+..+.+|++.|.++.++.+.|++.|+|++..
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~ 153 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTI 153 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCH
Confidence 9999999943 34 57999999999999987799999999999999999999999999999999999999864
No 34
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-33 Score=205.95 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=144.2
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++.+|.+.|||+.+||||||+++...+. +....+.+||++|.++|+|.+||+.+|.+.+++..|..++.|...++++++
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 4567999999999999999999987765 677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (170)
+..|.+.+++.+ |++. .||||+++++||||.. +|.||++||+|+++.++++|+|.+...++++||++|+++.+++
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleld 185 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELD 185 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccc
Confidence 999999999999 6665 5999999999999965 5999999999999999999999999999999999999998876
Q ss_pred C
Q 030879 167 L 167 (170)
Q Consensus 167 ~ 167 (170)
.
T Consensus 186 d 186 (233)
T KOG0181|consen 186 D 186 (233)
T ss_pred h
Confidence 4
No 35
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=208.07 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=142.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++.+|+|+||++++|+|||+.+++.... +...+...||..+++|++|+++|+.+|++.++++.|-+|+.|++....+++
T Consensus 26 AvrkGstaVgvrg~~~vvlgvEkkSv~~-Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvt 104 (249)
T KOG0183|consen 26 AVRKGSTAVGVRGNNCVVLGVEKKSVPK-LQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVT 104 (249)
T ss_pred HHhcCceEEEeccCceEEEEEeecchhh-hhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcH
Confidence 5678999999999999999999997754 667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 163 (170)
++.++..|+.+. |++. .||||+++||+|+|++|.|+||++||+|.+.+|.+.|+|.+++-+..+||+.|.+..
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~ 181 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEA 181 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhccccc
Confidence 999999999987 6653 489999999999999999999999999999999999999999999999999999874
No 36
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.3e-32 Score=205.19 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=145.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++.+.+|+||+.++||||||++++.++..+-.+...+||++|+|+|+|+++|+.+|+..|++.+|..++.|.+.+++++|
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34578999999999999999999999987777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (170)
++.|...+++.. |++. .|||||++|.+|||...+.+||+-||||++..|++.++|..++.+++.|.+.|+.+....
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~ 186 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDL 186 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccH
Confidence 999999999998 6664 589999999999998777999999999999999999999999999999999999886633
No 37
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.4e-31 Score=194.14 Aligned_cols=157 Identities=26% Similarity=0.471 Sum_probs=150.0
Q ss_pred cccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 030879 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (170)
Q Consensus 9 ~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (170)
+++..+|++||++++|++|.||+|.|........+.+.+|||+++|++++|.+|++.|++++.++++...++|+++.++.
T Consensus 2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~ 81 (204)
T KOG0180|consen 2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREERE 81 (204)
T ss_pred cceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcc
Confidence 56778999999999999999999999987777778999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCcee-eeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 89 ~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
|.|+.+++.+++++|++|+.||.+..+|||+|++++|+|...|..|.+. ..+|.+.|.+++..+++-|..|+|+|+-
T Consensus 82 i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmep 159 (204)
T KOG0180|consen 82 IKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEP 159 (204)
T ss_pred cCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCH
Confidence 9999999999999999999999999999999999999999999999986 5679999999999999999999999874
No 38
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=195.10 Aligned_cols=153 Identities=27% Similarity=0.328 Sum_probs=145.7
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
+..|||+++++++|||||++|+|.+.|..+.++..+|+-+|.|+|+|+-||+++|.|.+.+.++..+..|..++++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 92 ~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
...|+.++++.|+.| .-+.+.+||||||+..+.++|.|...|.+.+.+++.-||||.|++++++..|+++|..
T Consensus 96 ~~aA~l~r~~~Y~~r-e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 96 HTAASLFREICYNYR-EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred HHHHHHHHHHHHhCH-HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 999999999999876 2377899999999887789999999999999999999999999999999999999864
No 39
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=2.1e-29 Score=189.13 Aligned_cols=138 Identities=18% Similarity=0.186 Sum_probs=121.0
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEe-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
|||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|.+.+.+.++.+++.|+.. . .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~--~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN--L---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc--c---HHH
Confidence 79999999999999999999999999999999999999 99999999999999999999999999999832 1 466
Q ss_pred HHHHHHHHHHhhcC-CCeeEEEEEEEEcCCCCeEEEEECCCCceeee--CeEEEccChhhhHHHHhccCC-CCC
Q 030879 94 MGQLLSNTLYYKRF-FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK-SPS 163 (170)
Q Consensus 94 la~~l~~~~~~~r~-~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~ 163 (170)
+++.++.+. ..++ +|+.+++|++ |. |+||.+|+.|++.+. ++.++|||+.+++++||+.|+ ++|
T Consensus 76 ~a~l~~~l~-~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m 143 (172)
T PRK05456 76 AVELAKDWR-TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL 143 (172)
T ss_pred HHHHHHHHH-hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC
Confidence 666665542 2232 5788999994 43 699999999999666 899999999999999999999 988
No 40
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=197.35 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=137.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
+++.|++.||+|.++..||+|-++..+. +++..+|||+|++|++++++|+++|++.|.++++.+|..+++.++++++
T Consensus 28 avkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~p 104 (264)
T KOG0863|consen 28 AVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLP 104 (264)
T ss_pred HHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCccc
Confidence 4578999999999999999999998754 5678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+..+...+.+.++ ++| .|||||.++++|||+.| ||||+++|+|.+.+++..+||+.++.+.++||+.+.+..+-
T Consensus 105 v~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~ 182 (264)
T KOG0863|consen 105 VLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDS 182 (264)
T ss_pred HHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcC
Confidence 9999999888873 334 47999999999999766 99999999999999999999999999999999988775443
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=196.17 Aligned_cols=161 Identities=24% Similarity=0.339 Sum_probs=149.5
Q ss_pred CCCCCccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHH
Q 030879 3 KQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQ 82 (170)
Q Consensus 3 ~~~~~~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (170)
|..++++|++ +||+||++|++|||+||||+..++|++...++.+||++++|++++|+||..+|+|.+.+.++.....-.
T Consensus 30 ~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 30 PIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred CcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 5566888888 899999999999999999999999999999999999999999999999999999999999998876533
Q ss_pred -HhcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccC
Q 030879 83 -HQHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (170)
Q Consensus 83 -~~~~~~~~~~~la~~l~~~~~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~ 159 (170)
+..++.+.|+.++++|.+++|.+| ..|++..++|||+|.+++|+|-.+|..|..++.+..|+|.|..++.++|++.|
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~ 188 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW 188 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence 566799999999999999999987 68999999999999889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 030879 160 KSPSP 164 (170)
Q Consensus 160 ~~~~~ 164 (170)
+.+.+
T Consensus 189 ~~k~~ 193 (256)
T KOG0185|consen 189 EKKGE 193 (256)
T ss_pred hccch
Confidence 96554
No 42
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-30 Score=196.79 Aligned_cols=152 Identities=25% Similarity=0.283 Sum_probs=146.4
Q ss_pred cCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 030879 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (170)
Q Consensus 13 ~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (170)
.+|||++|+|+++|||+|+|+|++.|.+|.++..+||..||++++-..+|-++|++...+.+..+|++|++++++.|++.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 93 AMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 93 ~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
..+++|++++|+.|.-.+.+.++|||||+.| |.||++|..|.-..-+-.++|||+.+|+++|++.|+++++-
T Consensus 149 aASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~ 220 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSD 220 (285)
T ss_pred HHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCH
Confidence 9999999999998866788999999999877 99999999999999999999999999999999999999864
No 43
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-30 Score=196.71 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=148.3
Q ss_pred CCCccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHh
Q 030879 5 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQ 84 (170)
Q Consensus 5 ~~~~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 84 (170)
....+.+.+.|||++|+.+||||||++|+|.+.|..+...+.+||..|.++|+|+.+|-++|...+.+.+..++++|++.
T Consensus 27 g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~ 106 (271)
T KOG0173|consen 27 GLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLN 106 (271)
T ss_pred CCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhc
Confidence 44556777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 85 HNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 85 ~~~~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
.+|.+.+-...+.++..+|... .-.++.+|++|+|+.| ||||.+.|.|+....+|.+.|||+..+++.||..|++++.
T Consensus 107 t~R~~rVv~A~~mlkQ~LFrYq-G~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt 184 (271)
T KOG0173|consen 107 TGRKPRVVTALRMLKQHLFRYQ-GHIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLT 184 (271)
T ss_pred cCCCCceeeHHHHHHHHHHHhc-CcccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccC
Confidence 9999999999999999986543 2378999999999877 9999999999999999999999999999999999999987
Q ss_pred CC
Q 030879 165 LL 166 (170)
Q Consensus 165 ~~ 166 (170)
..
T Consensus 185 ~e 186 (271)
T KOG0173|consen 185 KE 186 (271)
T ss_pred HH
Confidence 54
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=1.2e-28 Score=184.16 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=118.7
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecC-ceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++ +++|++||..+|.+.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999998 999999999999999999999999999987764 44
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCCeEEEEECCCCceeee--CeEEEccChhhhHHHHhccCCCC-CC
Q 030879 95 GQLLSNTLYYKRFFPYY-SFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSP-SP 164 (170)
Q Consensus 95 a~~l~~~~~~~r~~P~~-v~~lv~G~d~~g~p~L~~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~-~~ 164 (170)
++++..++ ..+.+|+- +.++++++ ++||.+|+.|.+.+. ++.++|||+.+++++||..|+++ |.
T Consensus 76 a~l~~~l~-~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms 143 (171)
T cd01913 76 VELAKDWR-TDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS 143 (171)
T ss_pred HHHHHHHH-hccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC
Confidence 55555443 22344555 66665433 389999999999988 49999999999999999999995 65
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=1.1e-27 Score=175.70 Aligned_cols=148 Identities=27% Similarity=0.326 Sum_probs=138.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+||++++||||+|+|++.+.+.........|+++++++++++++|..+|++.+.++++.+++.|+..+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988766578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceeee-CeEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+.+++.++..+ .+|+++++||+|+|+ ++|+||.+|++|.+.+. .++++|+++.++.+.|++.|++++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~ 150 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMT 150 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCC
Confidence 99999997655 489999999999997 66999999999999999 9999999999999999999998753
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=2.9e-28 Score=182.06 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=116.6
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEe-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|.+.|.++++.++++|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999998743 3666
Q ss_pred HHHHHHHHHhhcCCC-eeEEEEEEEEcCCCCeEEEEECCCCceeee--CeEEEccChhhhHHHHhccCC-CCCC
Q 030879 95 GQLLSNTLYYKRFFP-YYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK-SPSP 164 (170)
Q Consensus 95 a~~l~~~~~~~r~~P-~~v~~lv~G~d~~g~p~L~~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~~ 164 (170)
++.++++ ...+++| +.+.++++++ ++||.+|+.|.+.++ ++.++|||+.+++++||..|+ ++++
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s 143 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS 143 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC
Confidence 7777764 2222223 3466666533 389999999999985 699999999999999999995 4443
No 47
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-27 Score=177.79 Aligned_cols=152 Identities=19% Similarity=0.292 Sum_probs=143.4
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
.+.|-|+|++|+||++|+++.+....+ ++.++...++|+|+++|+|+.+|..+|++..++++|.++..+++.+|.+|++
T Consensus 33 n~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~ 111 (246)
T KOG0182|consen 33 NQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPC 111 (246)
T ss_pred hcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 344999999999999999999999875 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 92 PAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 92 ~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+.|++++++.. |+++ .||+||.+++.|+|++.+|.+|.+||.|.+..+++.+.|--..-+.++||+.|+++..
T Consensus 112 DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~ 188 (246)
T KOG0182|consen 112 DILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDID 188 (246)
T ss_pred HHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCcc
Confidence 99999999987 7776 7999999999999999889999999999999999999999999999999999999855
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.2e-16 Score=113.33 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=115.1
Q ss_pred cCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecC-ceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 13 ~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
.+||||+++|-++-|++|+|.+++.|..++..+.+|+.+|.+ ++..|++|.++|++.|.++++.+++.|.-+.-+ .+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 379999999999999999999999999999999999988864 799999999999999999999999988633223 44
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceee--eCeEEEccChhhhHHHHhccCCCC
Q 030879 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER--VGYSSQGSGSTLIMPFLDNQLKSP 162 (170)
Q Consensus 92 ~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~~ 162 (170)
-++++.+++--|-+| +.+-++|+ |++ .++-+...|...+ .+..+||||..++++.....++..
T Consensus 80 velaKdwr~Dk~lr~---LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~ 144 (178)
T COG5405 80 VELAKDWRTDKYLRK---LEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENT 144 (178)
T ss_pred HHHHHhhhhhhHHHH---HhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhcc
Confidence 556666665544433 66777776 654 5899999998764 359999999999999988877653
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-09 Score=82.88 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEe---cCc-eEEeecCChhHHHHHHHHHHHHHHHHHH-hcCCCC
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL---ADK-CVMASSGFQADVKALQKLLAARHLIYQH-QHNKQM 89 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~ 89 (170)
||-|||++...|.|.++|+|...| .-..+..+|+|-. +++ +++..+|-.+-.|.+.+.+.+..+.-+. ..-..+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 678999999999999999998877 3344667777655 355 6678899999999999999887752211 112334
Q ss_pred CHHHHHHHHHHHH---Hhh-c------CCCeeEEEEEEEEcCCCCeEEEEECCCCceee----eCeEEEccChhhhHHHH
Q 030879 90 SCPAMGQLLSNTL---YYK-R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFL 155 (170)
Q Consensus 90 ~~~~la~~l~~~~---~~~-r------~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~----~~~~aiG~g~~~~~~~L 155 (170)
++-+.+.++.... +.+ + .--|.|++|++|.-..+.|+||.|.|.|++.+ .+|.-+|. +.+.+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 4555555555544 211 1 24588999999987666799999999999864 57999999 57899999
Q ss_pred hccCCCCCCCCC
Q 030879 156 DNQLKSPSPLLL 167 (170)
Q Consensus 156 e~~~~~~~~~~~ 167 (170)
++.++.++++.+
T Consensus 159 dR~i~~~~pLee 170 (255)
T COG3484 159 DRTITYDTPLEE 170 (255)
T ss_pred hhhhhccCCHHH
Confidence 999999988754
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=78.95 E-value=1.6 Score=33.36 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=18.8
Q ss_pred CCeEEEEEcCCEEEEeEeCc
Q 030879 15 GGTCVAIAGADYCVTAADTR 34 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~ 34 (170)
|+.+||.-+++|.|+|+|+|
T Consensus 1 MSLII~y~GknGaViaGDkR 20 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKR 20 (194)
T ss_pred CeEEEEEecCCCcEEeccce
Confidence 67899999999999999998
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=51.86 E-value=11 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=31.2
Q ss_pred EEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 128 ~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
..+|.+|.+.+.+|-..|+||..+-+.+-..|-+.+.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt 107 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKT 107 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHcccc
Confidence 5688999999999999999999998888766655543
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.31 E-value=14 Score=29.48 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|+.+|+-.+++|.|+|.|+|.. .+-|.-.|...|.+.+ ..|.--+-+.|
T Consensus 1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------YsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------YSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------hcCccccHHHH
Confidence 5789999999999999998831 3345555555554432 34555566666
Q ss_pred HHHHHHH
Q 030879 95 GQLLSNT 101 (170)
Q Consensus 95 a~~l~~~ 101 (170)
+++...+
T Consensus 50 ~r~aeel 56 (293)
T COG4079 50 ARKAEEL 56 (293)
T ss_pred HHHHHHc
Confidence 6666554
No 53
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=45.36 E-value=28 Score=20.40 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=29.0
Q ss_pred EEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 128 ~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
|.|+|+|.+...--...|+....+...||+.+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG~ 36 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALGT 36 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhCc
Confidence 7899999999888888899999999989876644
No 54
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=39.25 E-value=22 Score=13.54 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=5.5
Q ss_pred CCCCCCCC
Q 030879 163 SPLLLPAQ 170 (170)
Q Consensus 163 ~~~~~~~~ 170 (170)
.+++||+|
T Consensus 2 ~eYLpP~~ 9 (9)
T PF02757_consen 2 NEYLPPVE 9 (9)
T ss_pred ccccCCCC
Confidence 46777765
No 55
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=35.35 E-value=73 Score=19.82 Aligned_cols=30 Identities=3% Similarity=0.067 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030879 72 KLLAARHLIYQHQHNKQMSCPAMGQLLSNT 101 (170)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 101 (170)
++++..........|+.++.+.+|..+.--
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 445555556667889999999999887433
No 56
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=31.19 E-value=2.6e+02 Score=22.01 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=35.5
Q ss_pred eEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHH
Q 030879 17 TCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72 (170)
Q Consensus 17 tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 72 (170)
-.+.+..-+...||--....+ .-.+|.|..-|.|+|-+.|..--.-.|.+
T Consensus 44 ~a~s~~~g~~~~lAys~~~~~------~l~pR~F~~~DdIfCiF~G~L~Nl~~L~q 93 (228)
T PF12481_consen 44 NAFSMNFGDSAALAYSHSNQS------SLHPRLFAGVDDIFCIFLGSLENLCSLRQ 93 (228)
T ss_pred CeEEEEcCCCEEEEEecCCCC------ccccccccccCCEEEEEecchhhHHHHHH
Confidence 567788888888885433222 23478899989999999998766655553
No 57
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=28.36 E-value=1.3e+02 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCHHHH
Q 030879 68 KALQKLLAARHLIYQHQHNK-QMSCPAM 94 (170)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 94 (170)
..+++.++.+++.|++++++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 46788888999999999888 6665533
No 58
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=25.07 E-value=42 Score=22.72 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=12.0
Q ss_pred CCCeEEEEECCCCceeeeC
Q 030879 122 EGKGCVYTYDAVGSYERVG 140 (170)
Q Consensus 122 ~g~p~L~~id~~G~~~~~~ 140 (170)
+|.+++|.++|.|.++..+
T Consensus 52 ~g~~RiYiVEPtG~~EdDP 70 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDP 70 (100)
T ss_dssp SS--EEEEEEESS--EE-G
T ss_pred CCCCcEEEEccCCCcccCc
Confidence 5678999999999988764
No 59
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=22.12 E-value=1.6e+02 Score=20.23 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=26.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhcC---------C-CCCHHHHHHHHHHHH
Q 030879 61 SGFQADVKALQKLLAARHLIYQHQHN---------K-QMSCPAMGQLLSNTL 102 (170)
Q Consensus 61 sG~~~D~~~l~~~~~~~~~~~~~~~~---------~-~~~~~~la~~l~~~~ 102 (170)
.|..-|+..+.+.++.....+...+= . .+|++.+|.+|...+
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l 94 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERL 94 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHH
Confidence 57777888888888875554332111 1 278999999998887
No 60
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=21.79 E-value=2.2e+02 Score=21.69 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 030879 67 VKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY 104 (170)
Q Consensus 67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 104 (170)
++++.++++..+............+-...|.+|+++|-
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~ 162 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFV 162 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 67788888877766555555555566788999999964
Done!