Query 030879
Match_columns 170
No_of_seqs 118 out of 1096
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 3.4E-42 1.2E-46 265.6 21.7 153 8-160 2-154 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.4E-41 4.9E-46 263.9 21.3 153 8-160 2-155 (222)
3 1yar_H Proteasome beta subunit 100.0 2.2E-41 7.6E-46 262.0 20.5 155 8-164 1-155 (217)
4 1iru_J 20S proteasome; cell cy 100.0 1.4E-40 4.8E-45 255.2 19.9 157 8-164 1-159 (205)
5 1ryp_J 20S proteasome; multica 100.0 7.7E-40 2.6E-44 250.9 20.9 155 9-164 2-158 (204)
6 3h4p_a Proteasome subunit beta 100.0 6E-40 2E-44 254.4 18.9 151 15-165 1-152 (219)
7 1j2q_H Proteasome beta subunit 100.0 1.9E-39 6.5E-44 248.4 20.2 148 16-164 1-149 (202)
8 1ryp_N 20S proteasome; multica 100.0 1.6E-39 5.6E-44 253.9 17.6 151 11-161 4-161 (233)
9 1g0u_M Proteasome component PR 100.0 1.8E-39 6.1E-44 258.4 17.8 159 2-161 29-194 (266)
10 1ryp_H 20S proteasome; multica 100.0 7E-39 2.4E-43 245.8 20.3 153 10-164 4-156 (205)
11 1iru_N 20S proteasome; cell cy 100.0 1.8E-39 6.2E-44 251.4 17.1 153 11-164 4-161 (219)
12 1ryp_A 20S proteasome; multica 100.0 1.8E-39 6.1E-44 255.2 16.8 150 11-161 25-179 (243)
13 1ryp_K 20S proteasome; multica 100.0 5.6E-39 1.9E-43 245.0 18.9 150 15-164 1-153 (198)
14 3nzj_K Proteasome component PR 100.0 1E-38 3.4E-43 256.3 20.0 156 10-165 70-225 (287)
15 1iru_K 20S proteasome; cell cy 100.0 1.3E-38 4.6E-43 243.5 19.3 150 15-164 1-152 (201)
16 1ryp_C 20S proteasome; multica 100.0 1.4E-38 4.8E-43 250.2 19.8 155 11-165 27-185 (244)
17 1iru_L 20S proteasome; cell cy 100.0 2E-38 6.9E-43 243.0 20.0 149 16-165 1-149 (204)
18 1ryp_L 20S proteasome; multica 100.0 1.7E-38 5.9E-43 244.8 19.5 149 16-164 1-149 (212)
19 1iru_H 20S proteasome; cell cy 100.0 2.2E-38 7.5E-43 243.0 19.7 148 16-164 1-148 (205)
20 3nzj_H Proteasome component PU 100.0 2.6E-38 8.8E-43 250.9 19.8 155 9-165 23-177 (261)
21 1iru_D 20S proteasome; cell cy 100.0 1.7E-38 5.7E-43 250.4 18.2 152 11-163 25-180 (248)
22 1ryp_D 20S proteasome; multica 100.0 2.9E-38 1E-42 248.0 19.0 154 11-164 24-185 (241)
23 1yar_A Proteasome alpha subuni 100.0 4.7E-38 1.6E-42 245.6 19.4 153 11-165 30-186 (233)
24 1iru_A 20S proteasome; cell cy 100.0 3.1E-38 1.1E-42 248.5 18.4 152 12-164 32-190 (246)
25 1iru_C 20S proteasome; cell cy 100.0 3.7E-38 1.3E-42 250.1 18.8 154 11-164 27-185 (261)
26 1iru_B 20S proteasome; cell cy 100.0 3.4E-38 1.2E-42 246.4 18.2 152 12-165 28-183 (233)
27 1ryp_E 20S proteasome; multica 100.0 2E-38 6.9E-43 249.0 16.7 154 11-165 22-185 (242)
28 1iru_G 20S proteasome; cell cy 100.0 2.5E-38 8.6E-43 250.2 17.2 153 11-164 29-185 (254)
29 3unf_H Proteasome subunit beta 100.0 9.6E-38 3.3E-42 244.2 19.7 148 16-165 1-148 (234)
30 1iru_E 20S proteasome; cell cy 100.0 4.2E-38 1.4E-42 247.0 17.3 152 12-165 31-191 (241)
31 3h4p_A Proteasome subunit alph 100.0 2.1E-38 7.2E-43 251.9 15.2 153 11-165 34-190 (264)
32 1q5r_H Proteasome beta-type su 100.0 1.7E-37 5.9E-42 249.8 20.0 154 11-164 61-224 (294)
33 1ryp_I 20S proteasome; multica 100.0 2.4E-37 8.2E-42 240.2 19.6 148 16-165 1-148 (222)
34 1j2p_A Alpha-ring, proteasome 100.0 1.8E-37 6.1E-42 244.2 19.1 151 11-164 30-184 (246)
35 1q5q_H Proteasome beta-type su 100.0 2.7E-37 9.2E-42 241.8 19.8 150 16-165 1-160 (235)
36 1ryp_F 20S proteasome; multica 100.0 1.3E-37 4.6E-42 243.1 17.5 149 11-163 27-181 (233)
37 1ryp_G 20S proteasome; multica 100.0 1.6E-37 5.6E-42 244.2 17.6 152 11-164 26-184 (244)
38 1iru_I 20S proteasome; cell cy 100.0 6.5E-37 2.2E-41 239.5 20.6 147 16-164 1-147 (234)
39 3nzj_F Proteasome component C1 100.0 1.8E-37 6.2E-42 249.1 17.4 153 11-165 30-189 (288)
40 1ryp_B 20S proteasome; multica 100.0 2.9E-37 1E-41 243.5 17.7 153 12-165 28-185 (250)
41 3mi0_A Proteasome subunit alph 100.0 5.6E-37 1.9E-41 241.7 18.6 147 11-165 23-177 (248)
42 2jay_A Proteasome; hydrolase; 100.0 4.2E-37 1.4E-41 247.3 16.5 154 12-165 54-217 (291)
43 3unf_N Proteasome subunit beta 100.0 1.5E-36 5.2E-41 231.7 17.9 147 16-165 1-148 (199)
44 1iru_F 20S proteasome; cell cy 100.0 8.7E-37 3E-41 242.5 16.6 149 12-164 29-183 (263)
45 1q5q_A Proteasome alpha-type s 100.0 1.5E-35 5.2E-40 234.9 18.0 147 11-165 23-177 (259)
46 1m4y_A ATP-dependent protease 100.0 1.2E-32 4E-37 205.8 14.5 138 16-164 1-143 (171)
47 1g3k_A ATP-dependent protease 100.0 2.9E-32 9.9E-37 204.2 14.2 138 16-164 1-144 (174)
48 2z3b_A ATP-dependent protease 100.0 3E-32 1E-36 205.3 13.9 138 13-161 3-145 (180)
49 1qzv_F Plant photosystem I: su 36.6 48 0.0016 22.9 4.1 23 104-128 50-72 (154)
50 2hw2_A Rifampin ADP-ribosyl tr 21.8 35 0.0012 23.7 1.3 19 122-140 67-85 (143)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.4e-42 Score=265.62 Aligned_cols=153 Identities=50% Similarity=0.913 Sum_probs=148.2
Q ss_pred ccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 030879 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (170)
Q Consensus 8 ~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (170)
|+|++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+.++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCC
Q 030879 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (170)
+++++.+|+++++++|++|.|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~ 154 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 154 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccc
Confidence 9999999999999999988899999999999998778999999999999999999999999999999999944
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.4e-41 Score=263.94 Aligned_cols=153 Identities=46% Similarity=0.790 Sum_probs=148.4
Q ss_pred ccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-
Q 030879 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN- 86 (170)
Q Consensus 8 ~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~- 86 (170)
|+|++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCC
Q 030879 87 KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (170)
++++++.+|+.+++++|++|.+||++++||||||++++|+||++||+|++.++++.|+|+|+++++++||+.|+
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~ 155 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVN 155 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccc
Confidence 99999999999999999988889999999999998788999999999999999999999999999999999854
No 3
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.2e-41 Score=262.03 Aligned_cols=155 Identities=26% Similarity=0.393 Sum_probs=142.6
Q ss_pred ccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 030879 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (170)
Q Consensus 8 ~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (170)
|+|++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68899999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++++.+++.+++++|.+|.|||++++|||||| ++ |+||++||+|++.++++.|+|+|+++++++||+.|++++.
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TA-PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SS-EEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CC-CEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 999999999999999988888999999999999 54 9999999999999999999999999999999999998865
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.4e-40 Score=255.22 Aligned_cols=157 Identities=24% Similarity=0.413 Sum_probs=148.1
Q ss_pred ccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 030879 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (170)
Q Consensus 8 ~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (170)
++|++.+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 47889999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCCeEEEEECCCCceeee-CeEEEccChhhhHHHHhccCCCCCC
Q 030879 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~-~g~p~L~~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++++.+|+.+++++|++|..||++++||||||+ +++|+||++||+|++.++ +|+++|+|+++++++||+.|++++.
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 159 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMD 159 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCC
Confidence 9999999999999999988789999999999996 467999999999998655 6899999999999999999999865
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=7.7e-40 Score=250.93 Aligned_cols=155 Identities=23% Similarity=0.464 Sum_probs=147.2
Q ss_pred cccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 030879 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (170)
Q Consensus 9 ~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (170)
+|++.+|+|+|||+++||||||+|+|.+++.++.+++.+||++|+ ++++++||+.+|++.+.++++.+++.|+.+++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 688999999999999999999999999999888888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCCeEEEEECCCCceeee-CeEEEccChhhhHHHHhccCCCCCC
Q 030879 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 89 ~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~-~g~p~L~~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
++++.+++.+++++|++|..||++++||||||+ +++|+||++||+|++.++ +|+++|+|+++++++||+.|++++.
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 158 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence 999999999999999988779999999999996 567999999999998655 6899999999999999999999865
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6e-40 Score=254.36 Aligned_cols=151 Identities=25% Similarity=0.404 Sum_probs=144.4
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeC-eEEEccChhhhHHHHhccCCCCCCC
Q 030879 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 95 a~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++++++++|..|.+||++++||||||++++|+||++||+|++.+++ +.++|+|+++++++||+.|++++..
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ 152 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSV 152 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCH
Confidence 9999999988788899999999999985679999999999999999 9999999999999999999998753
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.9e-39 Score=248.39 Aligned_cols=148 Identities=26% Similarity=0.427 Sum_probs=142.7
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeC-eEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+.+++++|.+|.|||++++||||||++ +|+||++||+|++.+++ ++|+|+|+++++++||+.|++++.
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s 149 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIG 149 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETT-EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCC-CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcC
Confidence 999999998888899999999999974 59999999999999999 999999999999999999999875
No 8
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.6e-39 Score=253.92 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=145.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHH-----hc
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QH 85 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~ 85 (170)
++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+. ++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (233)
T 1ryp_N 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADA 83 (233)
T ss_dssp CCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTT
T ss_pred cccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 3568999999999999999999999999899999999999999999999999999999999999999999999 89
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 86 NKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 86 ~~~~~~~~la~~l~~~~~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
+++++++.+++++++++|++| .|||++++||||||++++|+||++||+|++.++++.++|+|+++++++||+.|++
T Consensus 84 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 84 EEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 999999999999999999877 6899999999999987679999999999999999999999999999999999998
No 9
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.8e-39 Score=258.36 Aligned_cols=159 Identities=16% Similarity=0.245 Sum_probs=147.9
Q ss_pred CCCCCCccccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHH
Q 030879 2 TKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIY 81 (170)
Q Consensus 2 ~~~~~~~~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (170)
+|+++.+++.. +|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.|.++++.+++.|
T Consensus 29 ~~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~ 107 (266)
T 1g0u_M 29 SPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTEN 107 (266)
T ss_dssp -----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHh
Confidence 46778888776 79999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HH-----hcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHH
Q 030879 82 QH-----QHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 154 (170)
Q Consensus 82 ~~-----~~~~~~~~~~la~~l~~~~~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~ 154 (170)
+. .++++++++.+++++++++|++| .|||++++||||||++++|+||++||+|++.++++.++|+|+++++++
T Consensus 108 ~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 108 AYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp HTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred hhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 98 89999999999999999999877 689999999999998767999999999999999999999999999999
Q ss_pred HhccCCC
Q 030879 155 LDNQLKS 161 (170)
Q Consensus 155 Le~~~~~ 161 (170)
||+.|++
T Consensus 188 Le~~~~~ 194 (266)
T 1g0u_M 188 LRKVVDR 194 (266)
T ss_dssp HTTTCSS
T ss_pred HHHhhcc
Confidence 9999999
No 10
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7e-39 Score=245.85 Aligned_cols=153 Identities=25% Similarity=0.333 Sum_probs=145.2
Q ss_pred ccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 030879 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (170)
Q Consensus 10 ~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (170)
.++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.++++ +
T Consensus 4 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 456789999999999999999999999998899999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 90 ~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++.+++.+++++|..|.+ |++++||||||++++|+||++||+|++.++++.++|+|+++++++||+.|++++.
T Consensus 83 ~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 9999999999999877655 9999999999976669999999999999999999999999999999999999875
No 11
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.8e-39 Score=251.42 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=145.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHH-hcCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQM 89 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~ 89 (170)
++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+. .+++++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (219)
T 1iru_N 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSY 83 (219)
T ss_dssp CCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4568999999999999999999999999899999999999999999999999999999999999999999998 899999
Q ss_pred CHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC--CCC
Q 030879 90 SCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS--PSP 164 (170)
Q Consensus 90 ~~~~la~~l~~~~~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~~ 164 (170)
+++.+++.+++++|++| .|||++++||||+|+. +|+||++||+|++.++++.++|+|+++++++||+.|++ ++.
T Consensus 84 ~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt 161 (219)
T 1iru_N 84 SPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLS 161 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred CHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence 99999999999999877 7899999999999964 69999999999999999999999999999999999999 654
No 12
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.8e-39 Score=255.17 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=143.5
Q ss_pred cccC-CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 030879 11 YDNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (170)
Q Consensus 11 ~~~~-g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (170)
++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.+++++
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678 9999999999999999999999 6688889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC
Q 030879 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 90 ~~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
+++.+|+++++++ |++| .|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 179 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 179 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhh
Confidence 9999999999999 8887 6899999999999976679999999999999999999999999999999999998
No 13
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5.6e-39 Score=245.01 Aligned_cols=150 Identities=19% Similarity=0.303 Sum_probs=142.1
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.+++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 78999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-C-CCeeEEEEEEEEcC-CCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 95 GQLLSNTLYYKR-F-FPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 95 a~~l~~~~~~~r-~-~P~~v~~lv~G~d~-~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
++.+++.+|..+ . +||++++||||||+ +++|+||++||+|++.++++.++|+|+++++++||+.|++++.
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s 153 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMT 153 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCC
Confidence 999999997643 3 49999999999997 5679999999999999999999999999999999999999865
No 14
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1e-38 Score=256.25 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=144.6
Q ss_pred ccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 030879 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (170)
Q Consensus 10 ~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (170)
..+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++++++++
T Consensus 70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~i 149 (287)
T 3nzj_K 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERI 149 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 90 ~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++.+++++++++|..|.+||++++||||||++++|+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 150 sv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~ 225 (287)
T 3nzj_K 150 SVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSV 225 (287)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCH
T ss_pred CHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCH
Confidence 9999999999999888777999999999999777799999999999999999999999999999999999987653
No 15
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.3e-38 Score=243.50 Aligned_cols=150 Identities=19% Similarity=0.328 Sum_probs=141.5
Q ss_pred CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 15 g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 95 GQLLSNTL-YYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 95 a~~l~~~~-~~~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
++++++.+ |..+ .+||++++||||||++++|+||++||+|++.++++.++|+|+++++++||+.|++++.
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 152 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTIS 152 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCC
Confidence 99999876 5434 3699999999999976679999999999999999999999999999999999999865
No 16
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.4e-38 Score=250.15 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=144.7
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 106 (244)
T 1ryp_C 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIP 106 (244)
T ss_dssp HHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35789999999999999999999999997766889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.+++++ |+++ .|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 107 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 185 (244)
T 1ryp_C 107 VEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKV 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCH
Confidence 999999999999 4443 68999999999999556799999999999999999999999999999999999998643
No 17
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2e-38 Score=243.02 Aligned_cols=149 Identities=24% Similarity=0.268 Sum_probs=142.5
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+++++|..|.+||++++||||||++ +|+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 149 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEV 149 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSS-SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCC-CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCH
Confidence 999999988877799999999999974 599999999999999999999999999999999999997653
No 18
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.7e-38 Score=244.80 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=143.0
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+++++++|..+..||++++||||||++++|+||++||+|++.++++.|+|+|+++++++||+.|++++.
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 149 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLS 149 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCC
Confidence 999999987776799999999999966679999999999999999999999999999999999999865
No 19
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.2e-38 Score=242.99 Aligned_cols=148 Identities=23% Similarity=0.266 Sum_probs=141.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+.+++++|..+. ||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++++.
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s 148 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT 148 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCC
Confidence 999999987664 99999999999976679999999999999999999999999999999999999865
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.6e-38 Score=250.93 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=141.6
Q ss_pred cccccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 030879 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (170)
Q Consensus 9 ~~~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (170)
..++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 89 ~~~~~la~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++++.+++++++.+|..+ +||++++||||||++| |+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 103 ~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 177 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTK 177 (261)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCH
T ss_pred CCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCCC-CEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCH
Confidence 999999999999987653 6999999999999755 99999999999999999999999999999999999998753
No 21
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.7e-38 Score=250.41 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=142.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++ ++..++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 25 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (248)
T 1iru_D 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVT 103 (248)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4568999999999999999999999998 677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCC
Q 030879 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (170)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 163 (170)
++.+++.++++++ +++ .|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++++
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m 180 (248)
T 1iru_D 104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180 (248)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSST
T ss_pred HHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccc
Confidence 9999999999994 443 479999999999996667999999999999999999999999999999999999987
No 22
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.9e-38 Score=247.97 Aligned_cols=154 Identities=16% Similarity=0.244 Sum_probs=143.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 24 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (241)
T 1ryp_D 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVT 103 (241)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999997776669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCC-CCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccC---CCC
Q 030879 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL---KSP 162 (170)
Q Consensus 91 ~~~la~~l~~~~~~~--r--~~P~~v~~lv~G~d~~-g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~---~~~ 162 (170)
++.+|+++++++|.. + .|||++++||||||++ ++|+||++||+|++.++++.|+|+|+++++++||+.| +++
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 183 (241)
T 1ryp_D 104 VEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPP 183 (241)
T ss_dssp HHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCC
Confidence 999999999999653 2 4799999999999975 6799999999999999999999999999999999999 776
Q ss_pred CC
Q 030879 163 SP 164 (170)
Q Consensus 163 ~~ 164 (170)
+.
T Consensus 184 ms 185 (241)
T 1ryp_D 184 AT 185 (241)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 23
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.7e-38 Score=245.61 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=142.6
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 108 (233)
T 1yar_A 30 AVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVN 108 (233)
T ss_dssp HHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3578999999999999999999999997 677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+|+.++++++. ++ .|||++++||||||+ .+|+||.+||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 109 v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 186 (233)
T 1yar_A 109 IENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE 186 (233)
T ss_dssp HHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCH
Confidence 99999999999964 32 479999999999997 4599999999999999999999999999999999999987653
No 24
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3.1e-38 Score=248.47 Aligned_cols=152 Identities=19% Similarity=0.263 Sum_probs=142.7
Q ss_pred ccC-CCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 12 DNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 12 ~~~-g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 32 v~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 110 (246)
T 1iru_A 32 INQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIP 110 (246)
T ss_dssp HHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 445 9999999999999999999998 46888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC--CCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS--PSP 164 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~~ 164 (170)
++.+++.+++++ |+++ .|||++++||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ ++.
T Consensus 111 ~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms 190 (246)
T 1iru_A 111 VDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWT 190 (246)
T ss_dssp HHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCC
Confidence 999999999985 7766 6899999999999976679999999999999999999999999999999999998 654
No 25
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=3.7e-38 Score=250.15 Aligned_cols=154 Identities=20% Similarity=0.186 Sum_probs=144.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 27 av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 106 (261)
T 1iru_C 27 AIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIP 106 (261)
T ss_dssp HHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35789999999999999999999999998887777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC-CCC
Q 030879 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS-PSP 164 (170)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~-~~~ 164 (170)
++.+++.++++++..+ .|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++ ++.
T Consensus 107 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms 185 (261)
T 1iru_C 107 CEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMT 185 (261)
T ss_dssp HHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCC
Confidence 9999999999995432 5899999999999976679999999999999999999999999999999999999 764
No 26
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.4e-38 Score=246.40 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=142.4
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+.++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 56899999999999999999999984 58888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 92 PAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 92 ~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+++++++++ |+++ .|||++++||||||. .+|+||++||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ 183 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 183 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCH
Confidence 99999999999 5554 589999999999994 4599999999999999999999999999999999999998643
No 27
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2e-38 Score=248.96 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=143.4
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++ +++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 22 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 100 (242)
T 1ryp_E 22 AIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDIN 100 (242)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3578999999999999999999999999766 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--------CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCC
Q 030879 91 CPAMGQLLSNTLYY--KR--------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 91 ~~~la~~l~~~~~~--~r--------~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (170)
++.+++.++++++. ++ .|||++++||||||++++|+||++||+|++.++++.++|+|+++++++||+.|+
T Consensus 101 v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (242)
T 1ryp_E 101 VESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180 (242)
T ss_dssp HHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc
Confidence 99999999998854 22 579999999999996667999999999999999999999999999999999999
Q ss_pred CCCCC
Q 030879 161 SPSPL 165 (170)
Q Consensus 161 ~~~~~ 165 (170)
+++..
T Consensus 181 ~~ms~ 185 (242)
T 1ryp_E 181 SSLTL 185 (242)
T ss_dssp TTCCH
T ss_pred cCCCH
Confidence 98753
No 28
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.5e-38 Score=250.21 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=142.6
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++ .++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 29 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 107 (254)
T 1iru_G 29 AVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIP 107 (254)
T ss_dssp HHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568999999999999999999999999776 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 91 CPAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
++.+++.++++++. ++ .|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++++.
T Consensus 108 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 185 (254)
T 1iru_G 108 LKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMT 185 (254)
T ss_dssp HHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCC
T ss_pred HHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCC
Confidence 99999999999954 33 5899999999999966679999999999999999999999999999999999988664
No 29
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=9.6e-38 Score=244.21 Aligned_cols=148 Identities=21% Similarity=0.307 Sum_probs=140.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.+++.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++++|..+ +||++++||||||++ +|+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 81 ~~l~~~l~~~~-~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 148 (234)
T 3unf_H 81 RILRQTLFRYQ-GHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTL 148 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHhcC-CCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCH
Confidence 99999987653 699999999999975 599999999999999999999999999999999999998753
No 30
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.2e-38 Score=247.04 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=142.7
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
+++|+|+|||+++||||||+|+|.+++.++ +++.+||++|++++++++||+.+|++.+.++++.+++.|+.++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 568999999999999999999999999766 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc-------CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCC
Q 030879 92 PAMGQLLSNTL--YYKR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSP 162 (170)
Q Consensus 92 ~~la~~l~~~~--~~~r-------~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 162 (170)
+.+++.+++++ |+++ .|||++++|||||| +++|+||++||+|++.++++.|+|+|+++++++||+.|+++
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 188 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKS 188 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccC
Confidence 99999999998 5543 47999999999999 55699999999999999999999999999999999999998
Q ss_pred CCC
Q 030879 163 SPL 165 (170)
Q Consensus 163 ~~~ 165 (170)
+..
T Consensus 189 ms~ 191 (241)
T 1iru_E 189 MTL 191 (241)
T ss_dssp CCH
T ss_pred CCH
Confidence 653
No 31
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-38 Score=251.94 Aligned_cols=153 Identities=22% Similarity=0.361 Sum_probs=143.0
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 4567999999999999999999999987 677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+|+.+++++ |+++ .|||++++||||||+ ++|+||++||+|++.+++++|+|+|+++++++||+.|++++..
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 190 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITL 190 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCS
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCH
Confidence 999999999998 4443 589999999999996 4599999999999999999999999999999999999998764
No 32
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.7e-37 Score=249.83 Aligned_cols=154 Identities=22% Similarity=0.253 Sum_probs=145.6
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 61 Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~is 140 (294)
T 1q5r_H 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140 (294)
T ss_dssp CSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCC
Confidence 46789999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEECCCCceeee--CeEEEccChhhhHHHHhccCC
Q 030879 91 CPAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK 160 (170)
Q Consensus 91 ~~~la~~l~~~~~~~r---~~P~~v~~lv~G~d~~g~-----p~L~~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~ 160 (170)
++.+++.|+++++..+ .+||++++||||||++++ |+||++||+|++.++ ++.++|+|+++++++||+.|+
T Consensus 141 v~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhcc
Confidence 9999999999996543 589999999999998756 999999999999998 899999999999999999999
Q ss_pred CCCC
Q 030879 161 SPSP 164 (170)
Q Consensus 161 ~~~~ 164 (170)
+++.
T Consensus 221 ~~ms 224 (294)
T 1q5r_H 221 PDSD 224 (294)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8875
No 33
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.4e-37 Score=240.15 Aligned_cols=148 Identities=23% Similarity=0.275 Sum_probs=141.0
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.+++.+|..+ +||++++||||+|++ +|+||++||+|++.++++.|+|+|+++++++||+.|++++..
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 148 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTK 148 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCC-CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCH
Confidence 99999987764 799999999999975 599999999999999999999999999999999999998753
No 34
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.8e-37 Score=244.21 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=141.4
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 30 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 108 (246)
T 1j2p_A 30 AVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPIT 108 (246)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568999999999999999999999987 555789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
++.+++.+++++ |+++ .|||++++|||||| ++|+||++||+|++.++++.|+|+|+++++++||+.|++++.
T Consensus 109 v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 184 (246)
T 1j2p_A 109 VKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLS 184 (246)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCC
Confidence 999999999999 5554 47999999999999 459999999999999999999999999999999999999865
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.7e-37 Score=241.75 Aligned_cols=150 Identities=23% Similarity=0.247 Sum_probs=141.9
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEECCCCceeee--CeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r---~~P~~v~~lv~G~d~~g~-----p~L~~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+.++++++..+ .|||++++||||||++++ |+||++||+|++.++ ++.|+|+|+++++++||+.|++++..
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 99999996532 689999999999998756 999999999999998 99999999999999999999988753
No 36
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.3e-37 Score=243.07 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=138.8
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.. ++.+||++|+++|++++||+.+|++.+.++++.+++.|+..++++++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356899999999999999999999998832 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC--CC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS--PS 163 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~ 163 (170)
++.+++.+++++ |+++ .|||++++||||||++ +|+||++||+|++.+++++|+|+|+++++++||+.|++ ++
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m 181 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKI 181 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC-cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhcccccc
Confidence 999999999999 5443 5799999999999975 59999999999999999999999999999999999998 66
No 37
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.6e-37 Score=244.23 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=140.5
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++.+ ..+||++|+++|++++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 26 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_G 26 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 104 (244)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356899999999999999999999999977654 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhcc---CCCCC
Q 030879 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPS 163 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~ 163 (170)
++.+++.+++++ |+++ .|||++++||||||+ .+|+||++||+|++.+++++++|+|+++++++||+. |++++
T Consensus 105 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~m 183 (244)
T 1ryp_G 105 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183 (244)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCC
Confidence 999999999999 4444 489999999999996 459999999999999999999999999999999997 98876
Q ss_pred C
Q 030879 164 P 164 (170)
Q Consensus 164 ~ 164 (170)
.
T Consensus 184 s 184 (244)
T 1ryp_G 184 S 184 (244)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=6.5e-37 Score=239.49 Aligned_cols=147 Identities=22% Similarity=0.304 Sum_probs=140.2
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (170)
+.+++.+|..+ +||++++||||||+++ |+||++||+|++.++++.++|+|+++++++||+.|++++.
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 147 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME 147 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCC
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCCC-CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCC
Confidence 99999988654 6999999999999754 9999999999999999999999999999999999999875
No 39
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.8e-37 Score=249.08 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=142.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
++++|+|+|||+++||||||+|+|.+++.++. +..+||++|+++|+|++||+.+|++.+.++++.+++.|++.++++++
T Consensus 30 Av~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~ 108 (288)
T 3nzj_F 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 108 (288)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 56789999999999999999999999996655 57799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hh--cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhcc---CCCCC
Q 030879 91 CPAMGQLLSNTLY--YK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPS 163 (170)
Q Consensus 91 ~~~la~~l~~~~~--~~--r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~ 163 (170)
++.+|++++++++ ++ +.|||+|++||||||++| |+||++||+|++.+++++++|+|+++++++||+. |++++
T Consensus 109 v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~m 187 (288)
T 3nzj_F 109 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187 (288)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCC
Confidence 9999999999994 33 268999999999999855 9999999999999999999999999999999999 88887
Q ss_pred CC
Q 030879 164 PL 165 (170)
Q Consensus 164 ~~ 165 (170)
..
T Consensus 188 s~ 189 (288)
T 3nzj_F 188 SA 189 (288)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 40
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.9e-37 Score=243.51 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=141.5
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHH-HHHhcCCCCC
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMS 90 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 90 (170)
+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||+.+|++.+.++++.+++. |+..++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5689999999999999999999998 5688889999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHH--Hhh--cCCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 91 CPAMGQLLSNTL--YYK--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 91 ~~~la~~l~~~~--~~~--r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
++.+++.+++++ +.+ +.|||++++||||||++++|+||++||+|++.+++++++|+|+++++++||+.|++++..
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 185 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELEL 185 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCH
Confidence 999988888887 332 358999999999999766799999999999999999999999999999999999998753
No 41
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.6e-37 Score=241.65 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=135.6
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (170)
++++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|.+.++..++.|++.++ +++
T Consensus 23 av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i 94 (248)
T 3mi0_A 23 GIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDV 94 (248)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 457899999999999999999999 24789999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEcC---CCCeEEEEECCCCcee-eeCeEEEccChhhhHHHHhccCCCC
Q 030879 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLDN---EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSP 162 (170)
Q Consensus 90 ~~~~la~~l~~~~---~~~r~~P~~v~~lv~G~d~---~g~p~L~~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~ 162 (170)
+++.+++.++..+ |+++.|||+|++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~ 174 (248)
T 3mi0_A 95 TGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAEN 174 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCC
Confidence 9999999999554 6667789999999999997 3669999999999999 5999999999999999999999998
Q ss_pred CCC
Q 030879 163 SPL 165 (170)
Q Consensus 163 ~~~ 165 (170)
+..
T Consensus 175 mt~ 177 (248)
T 3mi0_A 175 ASL 177 (248)
T ss_dssp CCH
T ss_pred CCH
Confidence 753
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.2e-37 Score=247.31 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=134.2
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+..+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 67899999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCC-----eEEEEECCCCcee--eeCeEEEccChhhhHHHHhccCCC
Q 030879 92 PAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 92 ~~la~~l~~~~~~~r---~~P~~v~~lv~G~d~~g~-----p~L~~id~~G~~~--~~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
+.+++.++++++..+ .|||+|++||||||++++ |+||++||+|++. ++++.++|+|+++++++||+.|++
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~ 213 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ 213 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC
Confidence 999999999997643 369999999999998766 9999999999988 889999999999999999999998
Q ss_pred CCCC
Q 030879 162 PSPL 165 (170)
Q Consensus 162 ~~~~ 165 (170)
++..
T Consensus 214 ~ms~ 217 (291)
T 2jay_A 214 VTDG 217 (291)
T ss_dssp CCSH
T ss_pred CCCH
Confidence 8653
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.5e-36 Score=231.66 Aligned_cols=147 Identities=23% Similarity=0.300 Sum_probs=137.8
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (170)
||+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCCeEEEEECCCCceee-eCeEEEccChhhhHHHHhccCCCCCCC
Q 030879 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (170)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (170)
+++++++|..| +||++++||||||++++|+||+ |+|++.+ .+++++|+|+++++++||+.|++++..
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~ 148 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTP 148 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCH
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCH
Confidence 99999998765 6999999999999867799999 9998755 457778999999999999999988753
No 44
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=8.7e-37 Score=242.53 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=138.3
Q ss_pred ccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 030879 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (170)
Q Consensus 12 ~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (170)
+++|+|+|||+++||||||+|+|.+++. .++.+||++|+++|++++||+.+|++.+.++++.+++.|+..+++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5679999999999999999999999884 2578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeCeEEEccChhhhHHHHhccCCC--CCC
Q 030879 92 PAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS--PSP 164 (170)
Q Consensus 92 ~~la~~l~~~~~--~~r--~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~~ 164 (170)
+.+++.++++++ +++ .|||++++||||||++ +|+||++||+|++.+++++++|+|+++++++||+.|++ ++.
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms 183 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECN 183 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcCC-CCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCC
Confidence 999999999995 433 5899999999999974 59999999999999999999999999999999999987 653
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.5e-35 Score=234.91 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred cccCCCeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEecCceEEeecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 030879 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (170)
Q Consensus 11 ~~~~g~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (170)
++++|+|+|||+++||||||+|+| +++.+||++|+++|+|++||+.+|++.+.++++.+++.|++.++ +++
T Consensus 23 av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i 94 (259)
T 1q5q_A 23 GIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDV 94 (259)
T ss_dssp HHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 467899999999999999999999 25789999999999999999999999999999999999998887 599
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEc--C-CCCeEEEEECCCCcee-eeCeEEEccChhhhHHHHhccCCCC
Q 030879 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLD--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSP 162 (170)
Q Consensus 90 ~~~~la~~l~~~~---~~~r~~P~~v~~lv~G~d--~-~g~p~L~~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~ 162 (170)
+++.+++.+++++ |+.+.|||+|++|||||| + +++|+||++||+|++. +++++++|+|++.++++||+.|+++
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 174 (259)
T 1q5q_A 95 TGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRAD 174 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCC
Confidence 9999999999963 776778999999999999 3 4569999999999999 7899999999999999999999998
Q ss_pred CCC
Q 030879 163 SPL 165 (170)
Q Consensus 163 ~~~ 165 (170)
+..
T Consensus 175 ms~ 177 (259)
T 1q5q_A 175 LDL 177 (259)
T ss_dssp CCH
T ss_pred CCH
Confidence 753
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-32 Score=205.77 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=123.3
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEe-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++++++++||+.+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999889999999999999 99999999999999999999999999988754 26666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceeeeC--eEEEccChhhhHHHHhccCC-CCCC
Q 030879 95 GQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLK-SPSP 164 (170)
Q Consensus 95 a~~l~~~~~~~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~--~~aiG~g~~~~~~~Le~~~~-~~~~ 164 (170)
+++.+ .+++.+ .+||++++|++ | +|+||++||+|++.+++ +.++|+|+++++++||+.|+ +++.
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms 143 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS 143 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCC
Confidence 66654 556655 35799999987 5 49999999999999987 99999999999999999999 7764
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.9e-32 Score=204.19 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=123.4
Q ss_pred CeEEEEEcCCEEEEeEeCccccCceeeecCcCceEEe-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 030879 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (170)
Q Consensus 16 ~tvvgik~~dgVvlaad~~~~~~~~i~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (170)
+|+|||+++||||||+|+|.+++.++.+++.+||++| ++++++++||+.+|++.+.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999989999999999999 9999999999999999999999999999885 45566
Q ss_pred HHHHHHHHHhhcC-CCeeEEEEEEEEcCCCCeEEEEECCCCceeeeC---eEEEccChhhhHHHHhccCC-CCCC
Q 030879 95 GQLLSNTLYYKRF-FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLK-SPSP 164 (170)
Q Consensus 95 a~~l~~~~~~~r~-~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~~~---~~aiG~g~~~~~~~Le~~~~-~~~~ 164 (170)
+..+++.++++|+ ||+ +.+++|+| +|+||++||+|++.+++ +.|+|+|+++++++||+.|+ +++.
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt 144 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS 144 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC
Confidence 6777777776663 565 56777887 49999999999999987 99999999999999999999 7764
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3e-32 Score=205.26 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=121.0
Q ss_pred cCCCeEEEEEcCCEEEEeEeCccccCce-eeecCcCceEEe-cCceEEeecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 030879 13 NNGGTCVAIAGADYCVTAADTRMSTGYS-ILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (170)
Q Consensus 13 ~~g~tvvgik~~dgVvlaad~~~~~~~~-i~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (170)
.+|+|+|||+++||||||+|+|.++|.+ +.+++.+||++| +++++++++|+.+|++.+.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999999878 999999999999 999999999999999999999999999988 2 23
Q ss_pred HHHHHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCCeEEEEECCCCceee--eCeEEEccChhhhHHHHhccCCC
Q 030879 91 CPAMGQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER--VGYSSQGSGSTLIMPFLDNQLKS 161 (170)
Q Consensus 91 ~~~la~~l~~~~~~~r-~~P~~v~~lv~G~d~~g~p~L~~id~~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~ 161 (170)
++.. ..++..+++.+ .|||++++||| | + |+||++||+|++.+ +++.|+|+|+++++++||+.|++
T Consensus 78 ~~~~-~~l~~~~~~~~~~rp~~~~~lva--d--~-p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~ 145 (180)
T 2z3b_A 78 KRAA-VELAKEWRSDKVLRKLEAMLIVM--N--Q-DTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKH 145 (180)
T ss_dssp HHHH-HHHHHHHHHCTTGGGCCCCEEEE--C--S-SCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhhCcCcceEEEEEE--c--C-CeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhc
Confidence 3333 34555554433 46999999998 4 3 89999999999987 59999999999999999999987
No 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=36.64 E-value=48 Score=22.85 Aligned_cols=23 Identities=0% Similarity=-0.030 Sum_probs=17.2
Q ss_pred hhcCCCeeEEEEEEEEcCCCCeEEE
Q 030879 104 YKRFFPYYSFNVLGGLDNEGKGCVY 128 (170)
Q Consensus 104 ~~r~~P~~v~~lv~G~d~~g~p~L~ 128 (170)
.+|+.-|+-+-|++|-| |-|||.
T Consensus 50 K~RFdkYgkSGLLCG~D--GLPHLI 72 (154)
T 1qzv_F 50 XXXXXXXXXXXXXXXXX--XXXXXX 72 (154)
T ss_pred hcccccccccccccccc--cccccc
Confidence 34666788888999976 668775
No 50
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=21.78 E-value=35 Score=23.71 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.9
Q ss_pred CCCeEEEEECCCCceeeeC
Q 030879 122 EGKGCVYTYDAVGSYERVG 140 (170)
Q Consensus 122 ~g~p~L~~id~~G~~~~~~ 140 (170)
+|.+++|.++|.|.+...+
T Consensus 67 eg~~RIYiVEPtG~fEdDP 85 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDP 85 (143)
T ss_dssp SSCCEEEEEEESSCCEECG
T ss_pred CCCCeEEEEccCCCcccCC
Confidence 5778999999999988654
Done!