Query 030880
Match_columns 170
No_of_seqs 147 out of 1651
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.1E-45 8.8E-50 234.1 15.5 163 6-168 6-169 (205)
2 KOG0078 GTP-binding protein SE 100.0 1.8E-43 3.9E-48 229.5 16.4 168 2-169 5-172 (207)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6E-43 1.3E-47 223.5 16.0 164 6-169 19-183 (221)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-42 2.4E-47 222.1 16.5 164 7-170 3-166 (200)
5 cd04120 Rab12 Rab12 subfamily. 100.0 5.1E-41 1.1E-45 225.2 18.3 159 10-168 1-160 (202)
6 KOG0098 GTPase Rab2, small G p 100.0 1.3E-41 2.8E-46 215.8 13.9 164 5-168 2-165 (216)
7 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-40 3.1E-45 221.2 18.1 161 8-169 5-165 (189)
8 KOG0080 GTPase Rab18, small G 100.0 4E-41 8.8E-46 208.8 13.8 163 7-169 9-172 (209)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.6E-40 3.4E-45 210.5 13.7 168 1-168 1-175 (210)
10 cd04122 Rab14 Rab14 subfamily. 100.0 3.7E-39 8.1E-44 211.4 18.3 161 9-169 2-162 (166)
11 cd04133 Rop_like Rop subfamily 100.0 3.3E-39 7.1E-44 212.5 17.8 158 10-169 2-171 (176)
12 cd04117 Rab15 Rab15 subfamily. 100.0 1.3E-38 2.8E-43 207.8 19.6 160 10-169 1-160 (161)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.4E-39 1.4E-43 212.3 18.3 160 7-168 3-177 (182)
14 KOG0079 GTP-binding protein H- 100.0 3.9E-40 8.5E-45 201.8 10.2 159 10-169 9-167 (198)
15 cd01875 RhoG RhoG subfamily. 100.0 1.5E-38 3.2E-43 212.6 18.1 160 8-169 2-175 (191)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.4E-38 3.1E-43 209.5 17.3 160 9-169 2-162 (172)
17 KOG0093 GTPase Rab3, small G p 100.0 2.1E-39 4.6E-44 198.4 12.2 160 8-167 20-179 (193)
18 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.4E-39 9.5E-44 208.4 14.2 163 7-169 12-174 (222)
19 cd04131 Rnd Rnd subfamily. Th 100.0 2.6E-38 5.7E-43 209.0 18.2 158 9-168 1-173 (178)
20 cd01865 Rab3 Rab3 subfamily. 100.0 3.7E-38 8.1E-43 206.4 18.4 159 10-168 2-160 (165)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.4E-38 9.4E-43 214.4 18.2 160 7-168 11-185 (232)
22 cd01867 Rab8_Rab10_Rab13_like 100.0 5.7E-38 1.2E-42 205.9 17.9 161 9-169 3-163 (167)
23 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 7.3E-38 1.6E-42 211.0 18.7 160 10-169 1-166 (201)
24 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 7.2E-38 1.6E-42 205.3 18.1 161 9-169 2-162 (166)
25 PF00071 Ras: Ras family; Int 100.0 7.1E-38 1.5E-42 204.5 17.2 159 11-169 1-159 (162)
26 cd04136 Rap_like Rap-like subf 100.0 1.1E-37 2.4E-42 203.7 18.0 161 9-170 1-162 (163)
27 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-37 4.9E-42 201.9 19.1 161 10-170 1-161 (161)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.4E-37 3E-42 205.3 18.1 158 10-169 2-173 (175)
29 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-37 2.3E-42 206.9 17.3 158 10-168 1-163 (182)
30 KOG0086 GTPase Rab4, small G p 100.0 1.3E-38 2.9E-43 196.3 11.9 161 8-168 8-168 (214)
31 cd04127 Rab27A Rab27a subfamil 100.0 1.7E-37 3.7E-42 206.0 17.4 162 8-169 3-175 (180)
32 PLN03110 Rab GTPase; Provision 100.0 3.1E-37 6.6E-42 209.8 19.0 165 5-169 8-172 (216)
33 KOG0095 GTPase Rab30, small G 100.0 1.7E-38 3.7E-43 195.1 11.5 159 9-167 7-165 (213)
34 cd04119 RJL RJL (RabJ-Like) su 100.0 2.8E-37 6E-42 202.6 18.1 160 10-169 1-165 (168)
35 cd04175 Rap1 Rap1 subgroup. T 100.0 2.3E-37 5E-42 202.5 17.5 160 9-169 1-161 (164)
36 cd01864 Rab19 Rab19 subfamily. 100.0 7.1E-37 1.5E-41 200.4 19.3 162 8-169 2-164 (165)
37 cd01868 Rab11_like Rab11-like. 100.0 6.2E-37 1.3E-41 200.6 18.8 161 9-169 3-163 (165)
38 cd04125 RabA_like RabA-like su 100.0 5.8E-37 1.3E-41 204.7 18.5 160 10-169 1-160 (188)
39 cd01871 Rac1_like Rac1-like su 100.0 6.5E-37 1.4E-41 201.9 18.5 159 10-170 2-174 (174)
40 cd04109 Rab28 Rab28 subfamily. 100.0 5.2E-37 1.1E-41 208.7 18.4 159 10-168 1-163 (215)
41 cd01866 Rab2 Rab2 subfamily. 100.0 7.9E-37 1.7E-41 200.7 18.4 161 9-169 4-164 (168)
42 PTZ00369 Ras-like protein; Pro 100.0 6.1E-37 1.3E-41 204.7 18.0 162 7-169 3-165 (189)
43 cd04106 Rab23_lke Rab23-like s 100.0 9.6E-37 2.1E-41 199.1 18.5 159 10-169 1-161 (162)
44 cd04110 Rab35 Rab35 subfamily. 100.0 9.4E-37 2E-41 205.2 18.7 160 8-168 5-164 (199)
45 cd04176 Rap2 Rap2 subgroup. T 100.0 1E-36 2.3E-41 199.2 18.4 161 9-170 1-162 (163)
46 PLN03071 GTP-binding nuclear p 100.0 6.6E-37 1.4E-41 208.4 18.0 160 7-169 11-170 (219)
47 cd04111 Rab39 Rab39 subfamily. 100.0 9.1E-37 2E-41 206.7 18.3 161 9-169 2-164 (211)
48 cd04116 Rab9 Rab9 subfamily. 100.0 3.6E-36 7.9E-41 197.9 19.9 163 7-170 3-170 (170)
49 cd04140 ARHI_like ARHI subfami 100.0 2E-36 4.3E-41 198.2 18.6 158 10-168 2-162 (165)
50 cd04144 Ras2 Ras2 subfamily. 100.0 6.4E-37 1.4E-41 204.8 16.2 158 11-169 1-161 (190)
51 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-36 6.6E-41 198.1 18.9 158 11-168 2-162 (170)
52 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-36 3.1E-41 203.2 17.6 160 10-169 1-161 (191)
53 cd04126 Rab20 Rab20 subfamily. 100.0 1.4E-36 3.1E-41 205.9 17.5 155 10-169 1-188 (220)
54 cd00877 Ran Ran (Ras-related n 100.0 2.6E-36 5.6E-41 197.8 18.1 157 10-169 1-157 (166)
55 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.3E-36 7.2E-41 196.4 17.9 159 9-169 1-160 (162)
56 PLN03108 Rab family protein; P 100.0 3.7E-36 8E-41 203.7 18.7 162 7-168 4-165 (210)
57 smart00173 RAS Ras subfamily o 100.0 2.5E-36 5.4E-41 197.6 17.1 159 10-169 1-160 (164)
58 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.2E-36 9.1E-41 196.4 18.2 160 9-169 2-162 (164)
59 cd01861 Rab6 Rab6 subfamily. 100.0 6.8E-36 1.5E-40 194.9 19.1 160 10-169 1-160 (161)
60 smart00175 RAB Rab subfamily o 100.0 5.1E-36 1.1E-40 196.0 18.1 160 10-169 1-160 (164)
61 cd01860 Rab5_related Rab5-rela 100.0 7.7E-36 1.7E-40 195.0 18.9 162 9-170 1-162 (163)
62 KOG0091 GTPase Rab39, small G 100.0 1.4E-37 3.1E-42 193.6 9.8 163 8-170 7-172 (213)
63 KOG0088 GTPase Rab21, small G 100.0 9E-38 2E-42 193.6 8.8 163 6-168 10-172 (218)
64 cd04134 Rho3 Rho3 subfamily. 100.0 4E-36 8.7E-41 200.7 17.5 158 10-169 1-172 (189)
65 cd04115 Rab33B_Rab33A Rab33B/R 100.0 8.1E-36 1.8E-40 196.2 18.2 161 9-169 2-167 (170)
66 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-35 2.4E-40 201.7 18.1 158 9-168 1-173 (222)
67 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-35 2.8E-40 193.6 17.8 156 10-169 1-156 (161)
68 cd01873 RhoBTB RhoBTB subfamil 100.0 2.2E-35 4.7E-40 197.4 18.1 158 9-169 2-194 (195)
69 cd04142 RRP22 RRP22 subfamily. 100.0 2.2E-35 4.7E-40 198.0 17.8 159 10-168 1-171 (198)
70 smart00176 RAN Ran (Ras-relate 100.0 1.5E-35 3.2E-40 198.6 17.0 152 15-169 1-152 (200)
71 smart00174 RHO Rho (Ras homolo 100.0 2.1E-35 4.6E-40 194.9 17.3 156 12-169 1-170 (174)
72 cd04123 Rab21 Rab21 subfamily. 100.0 5E-35 1.1E-39 190.8 18.7 160 10-169 1-160 (162)
73 cd04103 Centaurin_gamma Centau 100.0 3.9E-35 8.5E-40 190.5 17.8 154 10-170 1-158 (158)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.1E-35 1.1E-39 191.4 18.2 159 10-169 1-162 (164)
75 cd04177 RSR1 RSR1 subgroup. R 100.0 5.2E-35 1.1E-39 192.1 18.1 160 9-169 1-162 (168)
76 cd04132 Rho4_like Rho4-like su 100.0 3E-35 6.5E-40 196.3 17.0 157 10-168 1-164 (187)
77 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-34 2.9E-39 190.9 18.9 156 10-167 1-170 (173)
78 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-34 2.8E-39 194.1 18.5 158 10-168 1-163 (193)
79 cd04135 Tc10 TC10 subfamily. 100.0 1.4E-34 3E-39 191.0 18.1 159 10-170 1-173 (174)
80 cd04143 Rhes_like Rhes_like su 100.0 9.3E-35 2E-39 200.5 17.9 158 10-168 1-168 (247)
81 cd04146 RERG_RasL11_like RERG/ 100.0 4.5E-35 9.8E-40 191.8 15.6 158 11-169 1-162 (165)
82 PLN03118 Rab family protein; P 100.0 1.9E-34 4.1E-39 195.7 19.0 162 6-168 11-174 (211)
83 cd01863 Rab18 Rab18 subfamily. 100.0 3E-34 6.6E-39 187.1 19.2 159 10-169 1-160 (161)
84 cd00154 Rab Rab family. Rab G 100.0 4E-34 8.8E-39 185.7 19.2 159 10-168 1-159 (159)
85 cd04114 Rab30 Rab30 subfamily. 100.0 4.8E-34 1.1E-38 187.6 19.6 162 8-169 6-167 (169)
86 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-34 8.1E-39 188.5 18.1 159 10-168 1-164 (172)
87 cd04148 RGK RGK subfamily. Th 100.0 2.8E-34 6.1E-39 195.7 17.1 158 10-169 1-161 (221)
88 cd01892 Miro2 Miro2 subfamily. 100.0 2.5E-34 5.4E-39 188.9 15.7 160 8-169 3-164 (169)
89 KOG0083 GTPase Rab26/Rab37, sm 100.0 2E-36 4.3E-41 182.8 2.2 157 13-169 1-158 (192)
90 cd00876 Ras Ras family. The R 100.0 3E-33 6.6E-38 182.0 17.4 159 11-170 1-160 (160)
91 cd04139 RalA_RalB RalA/RalB su 100.0 2.6E-33 5.5E-38 183.1 17.1 159 10-169 1-160 (164)
92 cd04149 Arf6 Arf6 subfamily. 100.0 1.9E-33 4.2E-38 184.4 16.4 156 7-169 7-168 (168)
93 KOG0097 GTPase Rab14, small G 100.0 3.8E-34 8.1E-39 174.8 11.2 160 8-167 10-169 (215)
94 KOG0081 GTPase Rab27, small G 100.0 1E-35 2.2E-40 184.6 4.3 160 8-167 8-177 (219)
95 KOG0395 Ras-related GTPase [Ge 100.0 1E-33 2.2E-38 188.4 14.1 160 8-168 2-162 (196)
96 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.1E-34 2E-38 185.3 12.7 153 11-168 1-163 (164)
97 cd01870 RhoA_like RhoA-like su 100.0 1.2E-32 2.6E-37 181.9 17.9 158 10-169 2-173 (175)
98 cd00157 Rho Rho (Ras homology) 100.0 2.7E-32 5.9E-37 179.5 18.9 157 10-168 1-170 (171)
99 PTZ00132 GTP-binding nuclear p 100.0 2.8E-32 6.1E-37 185.6 19.2 166 1-169 1-166 (215)
100 cd04129 Rho2 Rho2 subfamily. 100.0 1.9E-32 4.2E-37 182.7 17.3 157 10-168 2-170 (187)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.2E-33 6.9E-38 181.9 13.0 152 10-168 1-158 (159)
102 smart00177 ARF ARF-like small 100.0 2.7E-33 5.8E-38 184.9 12.5 156 7-169 11-172 (175)
103 cd04158 ARD1 ARD1 subfamily. 100.0 1.1E-32 2.5E-37 181.1 15.3 152 11-169 1-159 (169)
104 cd04147 Ras_dva Ras-dva subfam 100.0 2.7E-32 5.8E-37 183.5 16.9 158 11-169 1-161 (198)
105 cd04137 RheB Rheb (Ras Homolog 100.0 2.6E-32 5.6E-37 181.1 16.5 159 10-169 2-161 (180)
106 PLN00223 ADP-ribosylation fact 100.0 1.7E-32 3.7E-37 181.8 15.0 156 7-169 15-176 (181)
107 cd04154 Arl2 Arl2 subfamily. 100.0 3.2E-32 6.9E-37 179.6 16.2 156 6-168 11-172 (173)
108 PTZ00133 ADP-ribosylation fact 100.0 9.6E-33 2.1E-37 183.2 11.5 156 7-169 15-176 (182)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4.7E-32 1E-36 180.2 14.2 159 8-169 2-168 (183)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.2E-31 7E-36 177.6 18.2 149 10-158 1-177 (202)
111 KOG0393 Ras-related small GTPa 100.0 3.5E-32 7.7E-37 177.6 11.0 159 7-167 2-175 (198)
112 cd01893 Miro1 Miro1 subfamily. 100.0 4.1E-31 8.9E-36 173.2 16.0 157 10-169 1-162 (166)
113 cd04157 Arl6 Arl6 subfamily. 100.0 1.2E-31 2.6E-36 175.0 13.2 153 11-169 1-162 (162)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.3E-31 2.8E-36 175.7 13.1 154 11-169 1-167 (167)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 8E-31 1.7E-35 173.0 16.6 154 8-168 14-173 (174)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1E-30 2.2E-35 170.3 14.2 152 11-168 1-159 (160)
117 cd00879 Sar1 Sar1 subfamily. 100.0 2.1E-30 4.5E-35 173.4 15.8 157 7-170 17-190 (190)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.3E-30 4.9E-35 169.8 15.6 153 11-169 1-167 (167)
119 cd04151 Arl1 Arl1 subfamily. 100.0 5.8E-31 1.3E-35 171.2 12.1 152 11-169 1-158 (158)
120 PF00025 Arf: ADP-ribosylation 100.0 2E-30 4.4E-35 171.0 14.4 158 6-170 11-175 (175)
121 PLN00023 GTP-binding protein; 100.0 8.6E-30 1.9E-34 178.6 17.9 142 5-146 17-189 (334)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.4E-30 5.2E-35 168.3 13.9 152 11-169 1-158 (158)
123 PTZ00099 rab6; Provisional 100.0 7.3E-30 1.6E-34 168.1 15.3 138 32-169 3-140 (176)
124 smart00178 SAR Sar1p-like memb 100.0 2E-29 4.3E-34 167.7 15.7 157 7-170 15-184 (184)
125 KOG0073 GTP-binding ADP-ribosy 100.0 1.5E-28 3.3E-33 153.3 13.6 158 6-168 13-175 (185)
126 KOG4252 GTP-binding protein [S 100.0 2.9E-31 6.4E-36 168.0 1.1 160 8-168 19-178 (246)
127 cd04159 Arl10_like Arl10-like 100.0 2.5E-28 5.4E-33 158.5 14.3 152 11-168 1-158 (159)
128 cd01890 LepA LepA subfamily. 100.0 4.6E-28 1E-32 160.5 14.8 154 11-170 2-176 (179)
129 cd04155 Arl3 Arl3 subfamily. 100.0 1.5E-27 3.3E-32 157.3 16.6 154 6-169 11-173 (173)
130 cd01898 Obg Obg subfamily. Th 100.0 6.6E-28 1.4E-32 158.5 14.5 157 11-169 2-169 (170)
131 TIGR00231 small_GTP small GTP- 100.0 3.6E-27 7.9E-32 152.8 17.6 158 9-167 1-160 (161)
132 cd01897 NOG NOG1 is a nucleola 100.0 8.4E-28 1.8E-32 157.7 14.0 154 11-169 2-166 (168)
133 cd01878 HflX HflX subfamily. 100.0 1.1E-27 2.5E-32 161.8 13.5 157 7-170 39-204 (204)
134 PRK12299 obgE GTPase CgtA; Rev 100.0 3E-27 6.5E-32 169.0 14.5 159 10-169 159-326 (335)
135 cd04171 SelB SelB subfamily. 100.0 5.5E-27 1.2E-31 153.1 14.4 152 10-168 1-163 (164)
136 COG1100 GTPase SAR1 and relate 100.0 9.7E-27 2.1E-31 158.8 15.7 160 8-167 4-181 (219)
137 KOG0070 GTP-binding ADP-ribosy 99.9 1.4E-27 3.1E-32 152.5 9.8 158 5-169 13-176 (181)
138 TIGR02528 EutP ethanolamine ut 99.9 2.3E-27 5.1E-32 151.6 10.9 134 11-167 2-141 (142)
139 cd00882 Ras_like_GTPase Ras-li 99.9 5.4E-26 1.2E-30 146.1 16.2 154 14-168 1-157 (157)
140 PRK04213 GTP-binding protein; 99.9 1.9E-27 4.1E-32 160.4 9.3 156 1-169 1-190 (201)
141 cd01879 FeoB Ferrous iron tran 99.9 1E-25 2.2E-30 146.4 13.4 146 14-168 1-154 (158)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.9E-26 1.7E-30 148.3 12.9 154 11-168 2-163 (168)
143 KOG3883 Ras family small GTPas 99.9 3.2E-25 6.9E-30 137.1 14.5 160 8-168 8-172 (198)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 7.3E-26 1.6E-30 151.8 12.4 149 10-162 3-173 (194)
145 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-25 3.6E-30 160.0 14.3 158 10-169 158-327 (329)
146 TIGR03156 GTP_HflX GTP-binding 99.9 3.2E-25 6.9E-30 159.8 15.3 154 8-169 188-350 (351)
147 PF08477 Miro: Miro-like prote 99.9 2.5E-25 5.5E-30 138.1 12.2 114 11-125 1-119 (119)
148 cd01881 Obg_like The Obg-like 99.9 2.6E-25 5.7E-30 146.8 12.7 156 14-170 1-176 (176)
149 KOG0071 GTP-binding ADP-ribosy 99.9 5.9E-25 1.3E-29 134.0 12.5 156 7-169 15-176 (180)
150 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-25 3.4E-30 143.0 9.9 148 10-166 1-156 (156)
151 KOG0075 GTP-binding ADP-ribosy 99.9 2.9E-26 6.3E-31 140.8 5.0 152 8-168 19-179 (186)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.8E-24 3.9E-29 140.2 13.6 145 10-169 2-155 (157)
153 cd01889 SelB_euk SelB subfamil 99.9 9.2E-25 2E-29 146.3 12.0 157 10-170 1-185 (192)
154 TIGR00436 era GTP-binding prot 99.9 1.7E-24 3.7E-29 151.8 13.9 151 11-169 2-162 (270)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.8E-24 3.9E-29 160.0 14.5 147 8-168 202-357 (442)
156 cd00881 GTP_translation_factor 99.9 2.6E-24 5.7E-29 143.5 13.2 154 11-170 1-186 (189)
157 PRK15494 era GTPase Era; Provi 99.9 3.5E-24 7.5E-29 154.2 14.3 153 7-169 50-214 (339)
158 TIGR00487 IF-2 translation ini 99.9 7.7E-24 1.7E-28 161.0 16.8 150 7-167 85-246 (587)
159 PRK15467 ethanolamine utilizat 99.9 1.5E-24 3.3E-29 140.7 10.7 137 11-169 3-145 (158)
160 PRK05291 trmE tRNA modificatio 99.9 2.3E-24 5E-29 160.2 12.9 145 8-168 214-367 (449)
161 cd01894 EngA1 EngA1 subfamily. 99.9 3.9E-24 8.5E-29 138.6 12.5 147 13-170 1-157 (157)
162 TIGR01393 lepA GTP-binding pro 99.9 5.1E-24 1.1E-28 162.5 14.8 154 10-169 4-178 (595)
163 cd04105 SR_beta Signal recogni 99.9 2.3E-23 5E-28 140.4 15.2 157 11-168 2-202 (203)
164 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.5E-28 157.7 15.1 151 9-169 38-197 (472)
165 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 2.7E-24 5.8E-29 137.5 9.3 160 7-169 8-167 (216)
166 PRK11058 GTPase HflX; Provisio 99.9 8.6E-24 1.9E-28 155.6 13.4 153 10-168 198-359 (426)
167 PRK12297 obgE GTPase CgtA; Rev 99.9 2.3E-23 5.1E-28 152.6 15.4 153 11-168 160-324 (424)
168 cd01888 eIF2_gamma eIF2-gamma 99.9 1.2E-23 2.5E-28 142.0 12.1 158 10-169 1-197 (203)
169 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.6E-28 157.7 13.0 155 8-168 210-379 (472)
170 cd04163 Era Era subfamily. Er 99.9 5.1E-23 1.1E-27 134.4 14.0 157 8-169 2-167 (168)
171 TIGR03598 GTPase_YsxC ribosome 99.9 5.1E-23 1.1E-27 136.4 13.3 150 4-160 13-179 (179)
172 PRK00454 engB GTP-binding prot 99.9 3.9E-23 8.6E-28 138.8 12.9 159 4-169 19-192 (196)
173 KOG1673 Ras GTPases [General f 99.9 1.5E-23 3.3E-28 130.1 9.9 160 6-166 17-181 (205)
174 cd01895 EngA2 EngA2 subfamily. 99.9 1.3E-22 2.9E-27 133.4 15.2 154 9-168 2-172 (174)
175 PRK05306 infB translation init 99.9 1.1E-22 2.4E-27 158.1 17.0 149 7-167 288-448 (787)
176 PRK12296 obgE GTPase CgtA; Rev 99.9 3.4E-23 7.4E-28 153.6 12.9 156 10-168 160-337 (500)
177 TIGR03594 GTPase_EngA ribosome 99.9 1.9E-22 4.1E-27 150.2 16.5 155 7-168 170-341 (429)
178 CHL00189 infB translation init 99.9 9.1E-23 2E-27 157.4 15.1 151 8-168 243-407 (742)
179 PRK12298 obgE GTPase CgtA; Rev 99.9 8.9E-23 1.9E-27 148.8 14.3 157 11-169 161-331 (390)
180 TIGR00475 selB selenocysteine- 99.9 8E-23 1.7E-27 155.9 14.1 149 10-167 1-162 (581)
181 TIGR00437 feoB ferrous iron tr 99.9 7.6E-23 1.6E-27 156.2 13.8 144 16-168 1-152 (591)
182 PRK00089 era GTPase Era; Revie 99.9 1.8E-22 3.9E-27 143.3 14.3 155 8-169 4-169 (292)
183 PRK05433 GTP-binding protein L 99.9 2.5E-22 5.5E-27 153.5 14.9 156 8-169 6-182 (600)
184 KOG0076 GTP-binding ADP-ribosy 99.9 1.3E-23 2.8E-28 132.6 6.4 158 5-168 13-184 (197)
185 KOG0074 GTP-binding ADP-ribosy 99.9 1.5E-22 3.4E-27 123.7 10.4 159 5-169 13-177 (185)
186 cd00880 Era_like Era (E. coli 99.9 3.1E-22 6.8E-27 129.7 12.2 151 14-169 1-162 (163)
187 PRK00093 GTP-binding protein D 99.9 4.7E-22 1E-26 148.3 14.6 146 10-168 2-159 (435)
188 PRK09554 feoB ferrous iron tra 99.9 1.4E-21 3E-26 152.6 16.5 151 8-167 2-164 (772)
189 PF00009 GTP_EFTU: Elongation 99.9 6.4E-23 1.4E-27 136.9 7.7 157 8-168 2-184 (188)
190 TIGR00483 EF-1_alpha translati 99.9 9.9E-22 2.1E-26 145.9 13.2 156 5-163 3-199 (426)
191 PRK12317 elongation factor 1-a 99.9 1.4E-21 3E-26 145.1 13.2 156 5-163 2-197 (425)
192 TIGR03594 GTPase_EngA ribosome 99.9 2.3E-21 5.1E-26 144.4 14.1 145 11-168 1-157 (429)
193 cd01896 DRG The developmentall 99.9 5.4E-21 1.2E-25 131.2 14.3 150 11-169 2-224 (233)
194 COG2229 Predicted GTPase [Gene 99.9 1.4E-20 3.1E-25 120.4 13.9 156 4-167 5-174 (187)
195 PRK00093 GTP-binding protein D 99.9 1E-20 2.3E-25 141.1 15.0 154 8-167 172-340 (435)
196 TIGR00491 aIF-2 translation in 99.9 1.1E-20 2.4E-25 143.6 14.6 152 9-167 4-212 (590)
197 COG1159 Era GTPase [General fu 99.9 6.2E-21 1.3E-25 131.1 11.9 156 7-168 4-169 (298)
198 KOG0072 GTP-binding ADP-ribosy 99.9 2.3E-22 5E-27 123.3 4.3 158 7-169 16-177 (182)
199 PRK09518 bifunctional cytidyla 99.9 2.3E-20 5.1E-25 145.9 16.6 152 8-169 274-434 (712)
200 KOG1707 Predicted Ras related/ 99.9 2E-21 4.4E-26 143.0 9.4 167 1-169 1-173 (625)
201 TIGR03680 eif2g_arch translati 99.9 5.4E-21 1.2E-25 140.9 11.7 160 7-168 2-193 (406)
202 cd04166 CysN_ATPS CysN_ATPS su 99.9 7.3E-21 1.6E-25 128.8 11.2 147 11-162 1-185 (208)
203 PRK09518 bifunctional cytidyla 99.9 1.3E-20 2.7E-25 147.4 13.9 153 8-168 449-618 (712)
204 TIGR01394 TypA_BipA GTP-bindin 99.9 1E-20 2.2E-25 144.4 12.1 156 10-169 2-189 (594)
205 PF10662 PduV-EutP: Ethanolami 99.9 1.8E-20 3.8E-25 117.3 10.8 136 11-168 3-143 (143)
206 PRK04000 translation initiatio 99.9 1.7E-20 3.7E-25 138.3 12.5 162 5-168 5-198 (411)
207 KOG4423 GTP-binding protein-li 99.8 7.3E-24 1.6E-28 135.2 -4.7 159 9-167 25-190 (229)
208 cd01876 YihA_EngB The YihA (En 99.8 2.9E-20 6.3E-25 121.7 12.1 151 11-170 1-170 (170)
209 PRK10218 GTP-binding protein; 99.8 8E-20 1.7E-24 139.4 15.8 156 9-168 5-192 (607)
210 KOG0077 Vesicle coat complex C 99.8 7.6E-21 1.6E-25 119.3 8.4 156 8-170 19-192 (193)
211 cd01884 EF_Tu EF-Tu subfamily. 99.8 7.9E-20 1.7E-24 122.2 13.0 145 9-159 2-171 (195)
212 PRK04004 translation initiatio 99.8 1.1E-19 2.4E-24 138.6 15.2 153 7-166 4-213 (586)
213 PRK10512 selenocysteinyl-tRNA- 99.8 8.3E-20 1.8E-24 140.0 13.7 153 11-168 2-163 (614)
214 cd01883 EF1_alpha Eukaryotic e 99.8 7.4E-20 1.6E-24 124.8 11.7 147 11-161 1-195 (219)
215 COG0486 ThdF Predicted GTPase 99.8 1.4E-19 3E-24 131.1 13.6 149 8-168 216-373 (454)
216 cd04167 Snu114p Snu114p subfam 99.8 1.3E-19 2.8E-24 123.2 11.5 113 11-127 2-136 (213)
217 COG1160 Predicted GTPases [Gen 99.8 2.8E-19 6.1E-24 129.3 11.0 149 10-169 4-163 (444)
218 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.1E-18 2.4E-23 119.0 13.1 153 11-167 1-219 (224)
219 PRK12736 elongation factor Tu; 99.8 7.8E-19 1.7E-23 129.1 12.4 156 6-167 9-197 (394)
220 KOG1423 Ras-like GTPase ERA [C 99.8 9.9E-19 2.2E-23 120.3 12.0 159 7-169 70-269 (379)
221 PRK12735 elongation factor Tu; 99.8 9.2E-19 2E-23 128.8 12.7 156 6-167 9-199 (396)
222 cd04168 TetM_like Tet(M)-like 99.8 1.7E-18 3.8E-23 119.0 12.9 130 11-146 1-146 (237)
223 COG0370 FeoB Fe2+ transport sy 99.8 1.6E-18 3.5E-23 130.6 13.4 152 8-168 2-161 (653)
224 TIGR00485 EF-Tu translation el 99.8 1.4E-18 2.9E-23 127.9 12.8 146 6-157 9-179 (394)
225 COG0532 InfB Translation initi 99.8 2.8E-18 6.1E-23 126.0 13.8 153 8-167 4-166 (509)
226 KOG1489 Predicted GTP-binding 99.8 4.2E-18 9.1E-23 117.7 13.2 155 11-169 198-365 (366)
227 COG1160 Predicted GTPases [Gen 99.8 4.8E-18 1E-22 123.0 14.1 155 8-168 177-348 (444)
228 cd01885 EF2 EF2 (for archaea a 99.8 3.5E-18 7.6E-23 116.1 12.1 113 11-127 2-138 (222)
229 COG0218 Predicted GTPase [Gene 99.8 3.5E-18 7.6E-23 111.7 11.5 157 4-168 19-194 (200)
230 cd04169 RF3 RF3 subfamily. Pe 99.8 1.3E-17 2.8E-22 116.5 14.5 116 10-129 3-138 (267)
231 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 4.9E-18 1.1E-22 115.4 11.5 155 11-168 1-173 (232)
232 PLN00043 elongation factor 1-a 99.8 3.3E-18 7.1E-23 127.2 11.6 152 6-161 4-203 (447)
233 cd04170 EF-G_bact Elongation f 99.8 4.2E-18 9E-23 119.6 11.5 151 11-167 1-169 (268)
234 cd01850 CDC_Septin CDC/Septin. 99.8 9.4E-18 2E-22 117.8 13.2 141 9-154 4-185 (276)
235 PRK05124 cysN sulfate adenylyl 99.8 4.4E-18 9.5E-23 127.4 12.0 153 5-162 23-216 (474)
236 CHL00071 tufA elongation facto 99.8 1.2E-17 2.5E-22 123.5 13.0 147 6-158 9-180 (409)
237 COG1084 Predicted GTPase [Gene 99.8 1.4E-17 2.9E-22 115.9 12.3 153 8-166 167-331 (346)
238 cd04104 p47_IIGP_like p47 (47- 99.8 1.2E-17 2.7E-22 112.2 11.5 152 9-168 1-181 (197)
239 PTZ00141 elongation factor 1- 99.8 1.3E-17 2.8E-22 124.0 11.9 151 6-161 4-203 (446)
240 PF09439 SRPRB: Signal recogni 99.8 6E-18 1.3E-22 110.5 8.8 118 9-129 3-127 (181)
241 COG2262 HflX GTPases [General 99.8 2.5E-17 5.4E-22 117.7 12.4 155 8-168 191-353 (411)
242 KOG0462 Elongation factor-type 99.7 3.2E-17 6.9E-22 120.5 12.5 160 7-170 58-234 (650)
243 COG0481 LepA Membrane GTPase L 99.7 6.7E-17 1.4E-21 117.2 13.8 163 2-170 2-185 (603)
244 TIGR02034 CysN sulfate adenyly 99.7 2.9E-17 6.2E-22 121.2 11.5 147 10-161 1-187 (406)
245 PRK00049 elongation factor Tu; 99.7 8.3E-17 1.8E-21 118.4 13.9 156 6-167 9-199 (396)
246 PLN03126 Elongation factor Tu; 99.7 8.2E-17 1.8E-21 120.3 14.0 149 6-158 78-249 (478)
247 COG5256 TEF1 Translation elong 99.7 8.3E-17 1.8E-21 115.1 12.2 154 5-161 3-201 (428)
248 KOG1145 Mitochondrial translat 99.7 1.3E-16 2.9E-21 117.3 13.3 151 8-166 152-311 (683)
249 PRK05506 bifunctional sulfate 99.7 5.9E-17 1.3E-21 125.6 12.0 152 5-161 20-211 (632)
250 cd01886 EF-G Elongation factor 99.7 1E-16 2.2E-21 112.1 12.0 113 11-129 1-131 (270)
251 COG1163 DRG Predicted GTPase [ 99.7 4.2E-16 9.1E-21 108.3 14.0 151 7-166 61-284 (365)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 2.5E-16 5.5E-21 112.2 13.0 81 12-92 1-110 (318)
253 PLN03127 Elongation factor Tu; 99.7 2.8E-16 6.1E-21 116.8 13.6 156 6-167 58-248 (447)
254 KOG0090 Signal recognition par 99.7 1.1E-16 2.4E-21 104.9 9.6 155 9-169 38-237 (238)
255 COG0536 Obg Predicted GTPase [ 99.7 8.5E-17 1.8E-21 112.5 9.6 156 12-168 162-330 (369)
256 PTZ00327 eukaryotic translatio 99.7 1.6E-16 3.4E-21 118.2 11.5 161 6-168 31-230 (460)
257 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-15 2.3E-20 94.4 12.3 106 11-123 1-116 (116)
258 PRK00741 prfC peptide chain re 99.7 8.2E-16 1.8E-20 116.3 12.9 119 7-129 8-146 (526)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 8.5E-16 1.8E-20 103.2 11.6 154 10-167 1-180 (196)
260 TIGR00484 EF-G translation elo 99.7 3E-15 6.4E-20 117.2 15.6 145 4-156 5-171 (689)
261 TIGR00503 prfC peptide chain r 99.7 1.8E-15 3.8E-20 114.6 12.8 118 7-128 9-146 (527)
262 PRK13351 elongation factor G; 99.7 8.2E-16 1.8E-20 120.4 11.0 120 6-129 5-140 (687)
263 COG3596 Predicted GTPase [Gene 99.7 4E-16 8.6E-21 106.3 7.8 160 6-168 36-219 (296)
264 KOG1191 Mitochondrial GTPase [ 99.6 4.5E-16 9.7E-21 113.3 7.6 159 8-168 267-447 (531)
265 TIGR00157 ribosome small subun 99.6 1.8E-15 3.8E-20 104.7 9.8 97 69-169 24-121 (245)
266 KOG3905 Dynein light intermedi 99.6 4E-15 8.7E-20 103.6 11.0 158 8-168 51-287 (473)
267 PRK12739 elongation factor G; 99.6 6E-15 1.3E-19 115.5 13.1 116 7-128 6-139 (691)
268 PRK09602 translation-associate 99.6 2E-14 4.3E-19 105.4 14.4 83 10-92 2-113 (396)
269 PRK09866 hypothetical protein; 99.6 1.7E-14 3.6E-19 109.2 13.9 109 58-168 230-350 (741)
270 PRK00007 elongation factor G; 99.6 6E-15 1.3E-19 115.5 12.0 143 6-156 7-171 (693)
271 COG2895 CysN GTPases - Sulfate 99.6 1.2E-14 2.6E-19 102.1 11.9 151 6-161 3-193 (431)
272 TIGR00101 ureG urease accessor 99.6 3.6E-14 7.7E-19 95.2 12.5 101 58-169 92-194 (199)
273 KOG1532 GTPase XAB1, interacts 99.6 1.2E-15 2.6E-20 103.9 5.2 111 57-167 115-260 (366)
274 cd00066 G-alpha G protein alph 99.6 8E-15 1.7E-19 105.0 9.7 113 56-168 159-308 (317)
275 PRK14845 translation initiatio 99.6 2.3E-14 5.1E-19 114.7 13.2 141 20-167 472-669 (1049)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.6 5.1E-14 1.1E-18 99.0 13.1 123 5-129 34-168 (313)
277 COG4917 EutP Ethanolamine util 99.6 3.2E-15 7E-20 90.0 6.1 136 11-168 3-143 (148)
278 cd01853 Toc34_like Toc34-like 99.6 6.5E-14 1.4E-18 96.9 12.6 121 6-129 28-164 (249)
279 KOG0458 Elongation factor 1 al 99.6 3.2E-14 6.8E-19 105.6 11.1 155 6-161 174-372 (603)
280 TIGR00490 aEF-2 translation el 99.6 1.6E-14 3.5E-19 113.4 10.3 117 8-128 18-152 (720)
281 smart00275 G_alpha G protein a 99.6 7.1E-14 1.5E-18 100.9 11.3 111 57-167 183-330 (342)
282 smart00010 small_GTPase Small 99.5 1.3E-13 2.8E-18 85.8 10.6 114 10-160 1-115 (124)
283 COG5257 GCD11 Translation init 99.5 2.1E-14 4.6E-19 99.8 6.8 162 7-170 8-201 (415)
284 PRK13768 GTPase; Provisional 99.5 5.3E-14 1.1E-18 97.8 8.8 109 59-169 98-245 (253)
285 PF05783 DLIC: Dynein light in 99.5 5.9E-13 1.3E-17 99.1 13.4 158 7-167 23-260 (472)
286 PF04548 AIG1: AIG1 family; I 99.5 6.6E-14 1.4E-18 95.1 7.8 153 10-166 1-181 (212)
287 PRK12740 elongation factor G; 99.5 2.3E-13 5.1E-18 106.6 11.6 138 15-160 1-158 (668)
288 KOG1707 Predicted Ras related/ 99.5 4.4E-13 9.6E-18 99.6 12.2 157 6-167 422-579 (625)
289 PLN00116 translation elongatio 99.5 2.5E-13 5.5E-18 108.3 10.0 117 7-127 17-163 (843)
290 TIGR00073 hypB hydrogenase acc 99.5 4.8E-13 1E-17 90.6 9.6 151 8-169 21-205 (207)
291 KOG1490 GTP-binding protein CR 99.5 2.3E-13 5E-18 99.6 8.4 157 6-165 165-335 (620)
292 PF03029 ATP_bind_1: Conserved 99.5 8E-15 1.7E-19 100.8 0.7 108 59-166 92-232 (238)
293 PTZ00416 elongation factor 2; 99.5 5.1E-13 1.1E-17 106.4 10.5 116 8-127 18-157 (836)
294 PTZ00258 GTP-binding protein; 99.5 1.8E-12 4E-17 94.4 12.3 86 7-92 19-126 (390)
295 COG0378 HypB Ni2+-binding GTPa 99.5 2.6E-13 5.5E-18 88.5 6.8 148 10-169 14-199 (202)
296 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.1E-12 9E-17 87.0 12.4 139 7-157 37-182 (225)
297 COG1217 TypA Predicted membran 99.4 1.5E-12 3.3E-17 94.8 10.4 155 10-168 6-192 (603)
298 PRK09435 membrane ATPase/prote 99.4 2.6E-12 5.7E-17 91.9 11.4 101 57-168 148-257 (332)
299 PRK09601 GTP-binding protein Y 99.4 7.6E-12 1.6E-16 90.3 13.3 83 10-92 3-107 (364)
300 PF00735 Septin: Septin; Inte 99.4 5.8E-12 1.3E-16 88.6 11.8 138 9-150 4-180 (281)
301 PRK07560 elongation factor EF- 99.4 1.1E-12 2.4E-17 103.5 8.6 116 8-127 19-152 (731)
302 KOG0461 Selenocysteine-specifi 99.4 5.6E-12 1.2E-16 88.9 10.5 161 5-169 3-191 (522)
303 KOG0082 G-protein alpha subuni 99.4 7.2E-12 1.6E-16 89.4 10.6 110 58-167 195-340 (354)
304 PF05049 IIGP: Interferon-indu 99.4 5.4E-12 1.2E-16 91.1 8.7 142 8-157 34-202 (376)
305 PF00350 Dynamin_N: Dynamin fa 99.4 7.5E-12 1.6E-16 82.0 8.8 63 59-124 102-168 (168)
306 COG0480 FusA Translation elong 99.3 3.1E-11 6.8E-16 93.7 12.9 120 6-130 7-144 (697)
307 TIGR00750 lao LAO/AO transport 99.3 6.9E-12 1.5E-16 89.4 8.6 101 57-168 126-235 (300)
308 cd01900 YchF YchF subfamily. 99.3 2.2E-11 4.8E-16 85.1 10.5 81 12-92 1-103 (274)
309 KOG1144 Translation initiation 99.3 4.7E-12 1E-16 96.7 7.5 153 9-168 475-684 (1064)
310 smart00053 DYNc Dynamin, GTPas 99.3 6.1E-11 1.3E-15 81.4 10.8 93 58-157 125-235 (240)
311 KOG3886 GTP-binding protein [S 99.3 9.6E-12 2.1E-16 83.0 6.3 145 9-155 4-163 (295)
312 TIGR02836 spore_IV_A stage IV 99.3 3.1E-10 6.6E-15 82.6 14.1 153 8-165 16-231 (492)
313 TIGR00993 3a0901s04IAP86 chlor 99.3 1E-10 2.2E-15 89.4 11.2 119 8-128 117-250 (763)
314 PRK10463 hydrogenase nickel in 99.2 2.3E-11 5E-16 85.1 6.6 54 115-168 231-286 (290)
315 COG5019 CDC3 Septin family pro 99.2 1.7E-10 3.8E-15 82.1 10.9 138 8-150 22-200 (373)
316 PRK12289 GTPase RsgA; Reviewed 99.2 1.2E-10 2.5E-15 84.4 9.6 93 72-169 80-173 (352)
317 COG3276 SelB Selenocysteine-sp 99.2 8.8E-11 1.9E-15 85.2 8.9 152 11-168 2-159 (447)
318 KOG0468 U5 snRNP-specific prot 99.2 1.4E-10 3.1E-15 87.9 10.3 117 7-127 126-262 (971)
319 COG0012 Predicted GTPase, prob 99.2 1.5E-09 3.2E-14 77.8 13.5 84 9-92 2-108 (372)
320 KOG2655 Septin family protein 99.2 5E-10 1.1E-14 80.2 10.9 139 8-150 20-196 (366)
321 cd01854 YjeQ_engC YjeQ/EngC. 99.2 2E-10 4.3E-15 81.4 8.6 87 77-168 74-161 (287)
322 PRK00098 GTPase RsgA; Reviewed 99.2 2.2E-10 4.8E-15 81.7 8.5 87 79-169 78-165 (298)
323 COG4108 PrfC Peptide chain rel 99.2 4E-10 8.7E-15 81.8 9.6 134 7-147 10-164 (528)
324 KOG0705 GTPase-activating prot 99.2 3.8E-11 8.2E-16 89.1 4.3 156 6-168 27-186 (749)
325 PF03308 ArgK: ArgK protein; 99.1 4.2E-11 9.2E-16 81.9 3.5 148 8-167 28-226 (266)
326 KOG1954 Endocytosis/signaling 99.1 4.9E-10 1.1E-14 79.9 8.8 122 7-131 56-228 (532)
327 KOG0410 Predicted GTP binding 99.1 7E-11 1.5E-15 82.7 4.4 148 8-166 177-336 (410)
328 PRK12288 GTPase RsgA; Reviewed 99.1 4.7E-10 1E-14 81.2 8.8 88 79-169 118-206 (347)
329 cd01855 YqeH YqeH. YqeH is an 99.1 1.6E-10 3.6E-15 77.2 5.9 91 71-168 24-122 (190)
330 KOG1547 Septin CDC10 and relat 99.1 1.1E-09 2.3E-14 74.0 9.0 142 8-154 45-226 (336)
331 COG0050 TufB GTPases - transla 99.1 1.1E-09 2.3E-14 76.0 7.9 145 7-155 10-177 (394)
332 COG1703 ArgK Putative periplas 99.0 1.1E-09 2.5E-14 76.1 7.7 101 56-167 142-250 (323)
333 cd01859 MJ1464 MJ1464. This f 99.0 2.5E-10 5.5E-15 74.0 4.3 90 73-168 4-93 (156)
334 KOG1486 GTP-binding protein DR 99.0 2.5E-08 5.3E-13 68.0 13.8 109 8-118 61-177 (364)
335 KOG1143 Predicted translation 99.0 1.6E-09 3.5E-14 77.5 8.2 158 3-164 161-381 (591)
336 PF00503 G-alpha: G-protein al 99.0 3.5E-09 7.6E-14 78.3 9.6 113 56-168 234-387 (389)
337 KOG0085 G protein subunit Galp 99.0 2.7E-10 5.9E-15 76.5 2.1 113 56-168 197-346 (359)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2.1E-09 4.6E-14 68.5 6.1 54 11-68 85-138 (141)
339 TIGR03597 GTPase_YqeH ribosome 98.9 2.3E-09 5.1E-14 78.3 6.4 93 68-167 50-149 (360)
340 KOG3887 Predicted small GTPase 98.9 3.4E-09 7.4E-14 71.7 6.3 156 9-167 27-198 (347)
341 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.3E-09 1.8E-13 66.9 7.0 55 8-67 101-156 (157)
342 COG5258 GTPBP1 GTPase [General 98.9 2.3E-08 4.9E-13 72.0 9.6 158 6-167 114-338 (527)
343 KOG2486 Predicted GTPase [Gene 98.9 3.5E-09 7.7E-14 72.9 5.3 153 7-168 134-313 (320)
344 KOG0467 Translation elongation 98.8 1.4E-08 3.1E-13 78.2 7.9 118 2-126 2-136 (887)
345 KOG0448 Mitofusin 1 GTPase, in 98.8 1.2E-07 2.7E-12 72.5 12.4 145 8-156 108-311 (749)
346 cd04178 Nucleostemin_like Nucl 98.8 1.6E-08 3.4E-13 66.5 6.6 54 9-67 117-171 (172)
347 KOG0099 G protein subunit Galp 98.8 1.5E-08 3.3E-13 69.3 6.1 71 57-127 201-282 (379)
348 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.3E-13 64.4 7.0 85 78-167 5-91 (157)
349 KOG4273 Uncharacterized conser 98.8 1E-07 2.2E-12 65.0 9.5 152 10-166 5-217 (418)
350 cd01856 YlqF YlqF. Proteins o 98.8 3.2E-08 6.9E-13 65.1 6.9 57 8-68 114-170 (171)
351 COG5192 BMS1 GTP-binding prote 98.8 1.1E-07 2.5E-12 71.7 10.2 139 5-155 65-210 (1077)
352 PRK10416 signal recognition pa 98.8 2E-07 4.4E-12 67.0 11.1 142 9-162 114-301 (318)
353 cd01849 YlqF_related_GTPase Yl 98.8 3.7E-08 8.1E-13 63.7 6.6 82 83-168 1-82 (155)
354 cd01855 YqeH YqeH. YqeH is an 98.8 2E-08 4.3E-13 67.2 5.4 54 9-67 127-189 (190)
355 cd01859 MJ1464 MJ1464. This f 98.7 5.3E-08 1.2E-12 63.0 7.1 56 8-67 100-155 (156)
356 cd01856 YlqF YlqF. Proteins o 98.7 1.8E-08 4E-13 66.3 4.9 88 73-168 11-98 (171)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 7.1E-08 1.5E-12 61.4 7.3 77 76-158 6-84 (141)
358 TIGR00092 GTP-binding protein 98.7 7.8E-08 1.7E-12 69.9 7.8 83 10-92 3-108 (368)
359 PRK14974 cell division protein 98.7 2.1E-07 4.5E-12 67.2 9.8 96 57-164 222-323 (336)
360 TIGR03596 GTPase_YlqF ribosome 98.7 6.5E-08 1.4E-12 68.4 7.1 56 8-68 117-173 (276)
361 PF03193 DUF258: Protein of un 98.7 2.1E-08 4.5E-13 64.7 4.1 59 10-71 36-100 (161)
362 TIGR00064 ftsY signal recognit 98.7 2.5E-07 5.4E-12 65.2 9.8 95 56-163 153-260 (272)
363 PRK09563 rbgA GTPase YlqF; Rev 98.7 8.8E-08 1.9E-12 68.1 7.6 57 8-69 120-177 (287)
364 KOG1491 Predicted GTP-binding 98.7 6E-08 1.3E-12 68.7 6.5 86 7-92 18-125 (391)
365 KOG0466 Translation initiation 98.7 4E-09 8.7E-14 73.6 0.2 110 59-170 126-240 (466)
366 KOG0464 Elongation factor G [T 98.7 4.4E-08 9.5E-13 71.3 5.0 118 9-130 37-170 (753)
367 cd01849 YlqF_related_GTPase Yl 98.6 1.1E-07 2.5E-12 61.5 6.1 56 7-67 98-154 (155)
368 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 68.9 6.6 58 12-72 208-271 (347)
369 cd01851 GBP Guanylate-binding 98.6 1.5E-06 3.3E-11 59.6 10.9 86 9-94 7-104 (224)
370 KOG0447 Dynamin-like GTP bindi 98.6 1.3E-06 2.8E-11 66.0 10.8 81 59-142 413-507 (980)
371 PRK01889 GTPase RsgA; Reviewed 98.6 4E-07 8.6E-12 66.6 8.0 84 79-167 110-193 (356)
372 COG1161 Predicted GTPases [Gen 98.6 2.1E-07 4.7E-12 67.1 6.5 57 8-68 131-187 (322)
373 COG1162 Predicted GTPases [Gen 98.5 1.6E-07 3.5E-12 66.0 5.4 59 11-72 166-230 (301)
374 TIGR03348 VI_IcmF type VI secr 98.5 5.2E-07 1.1E-11 75.1 9.2 112 12-128 114-257 (1169)
375 KOG3859 Septins (P-loop GTPase 98.5 4E-07 8.7E-12 63.1 7.0 59 9-67 42-104 (406)
376 TIGR03596 GTPase_YlqF ribosome 98.5 2E-07 4.3E-12 66.0 5.6 86 74-167 14-99 (276)
377 cd03112 CobW_like The function 98.5 8.6E-07 1.9E-11 57.5 7.8 64 57-126 86-158 (158)
378 KOG0460 Mitochondrial translat 98.5 6.5E-07 1.4E-11 63.7 7.5 146 6-155 51-219 (449)
379 PRK12289 GTPase RsgA; Reviewed 98.5 2.9E-07 6.3E-12 67.0 5.9 57 11-70 174-236 (352)
380 PRK13796 GTPase YqeH; Provisio 98.5 4.6E-07 9.9E-12 66.5 6.9 83 79-168 66-156 (365)
381 KOG0463 GTP-binding protein GP 98.5 7.3E-07 1.6E-11 64.4 7.0 157 5-165 129-352 (641)
382 COG1162 Predicted GTPases [Gen 98.5 2.4E-06 5.1E-11 60.3 9.4 93 74-169 72-165 (301)
383 COG1618 Predicted nucleotide k 98.4 1.8E-05 4E-10 50.7 12.2 112 8-126 4-142 (179)
384 TIGR00157 ribosome small subun 98.4 5.5E-07 1.2E-11 62.6 5.8 24 10-33 121-144 (245)
385 PF09547 Spore_IV_A: Stage IV 98.4 2.4E-05 5.1E-10 57.7 13.1 153 8-165 16-231 (492)
386 PRK14722 flhF flagellar biosyn 98.4 8E-06 1.7E-10 59.8 10.6 140 9-152 137-315 (374)
387 TIGR01425 SRP54_euk signal rec 98.4 4.9E-06 1.1E-10 61.9 9.3 141 9-161 100-280 (429)
388 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.3E-06 2.8E-11 62.2 6.0 95 65-167 7-102 (287)
389 KOG1487 GTP-binding protein DR 98.3 4E-06 8.6E-11 57.7 7.9 84 9-94 59-149 (358)
390 PF03266 NTPase_1: NTPase; In 98.3 3.5E-06 7.6E-11 55.2 7.3 134 11-159 1-163 (168)
391 TIGR03597 GTPase_YqeH ribosome 98.3 1.8E-06 3.8E-11 63.4 6.2 55 10-69 155-215 (360)
392 PRK00098 GTPase RsgA; Reviewed 98.3 2E-06 4.4E-11 61.5 6.4 25 10-34 165-189 (298)
393 KOG0459 Polypeptide release fa 98.3 1E-06 2.2E-11 64.0 4.7 157 6-164 76-279 (501)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2E-06 4.2E-11 61.3 6.2 59 10-71 162-226 (287)
395 PRK13796 GTPase YqeH; Provisio 98.3 1.5E-06 3.1E-11 63.9 5.5 54 10-68 161-220 (365)
396 COG0523 Putative GTPases (G3E 98.3 3.4E-05 7.4E-10 55.6 12.0 97 58-163 85-193 (323)
397 KOG0465 Mitochondrial elongati 98.3 3.3E-06 7.1E-11 64.3 6.9 118 10-131 40-173 (721)
398 cd03115 SRP The signal recogni 98.3 9.1E-06 2E-10 53.5 8.2 82 57-148 82-169 (173)
399 PRK11537 putative GTP-binding 98.2 3.8E-05 8.3E-10 55.4 11.6 95 58-163 91-196 (318)
400 PF06858 NOG1: Nucleolar GTP-b 98.2 7.7E-06 1.7E-10 43.0 5.8 45 80-125 12-58 (58)
401 cd02038 FleN-like FleN is a me 98.2 9.8E-06 2.1E-10 51.5 7.6 106 14-127 5-110 (139)
402 PF00448 SRP54: SRP54-type pro 98.2 1.9E-05 4.1E-10 53.1 9.3 89 58-159 84-179 (196)
403 PRK00771 signal recognition pa 98.2 2.2E-06 4.8E-11 64.1 5.2 142 8-161 94-273 (437)
404 cd03114 ArgK-like The function 98.2 8.1E-06 1.8E-10 52.4 6.9 58 57-125 91-148 (148)
405 TIGR00959 ffh signal recogniti 98.2 1.4E-05 3E-10 59.8 9.0 93 57-161 182-280 (428)
406 PF02492 cobW: CobW/HypB/UreG, 98.2 1.1E-05 2.4E-10 53.4 7.2 83 57-145 84-171 (178)
407 PRK13695 putative NTPase; Prov 98.2 6.7E-05 1.5E-09 49.5 10.8 22 10-31 1-22 (174)
408 PRK10867 signal recognition pa 98.1 2.3E-05 5.1E-10 58.6 8.9 93 57-161 183-281 (433)
409 COG3523 IcmF Type VI protein s 98.1 5.9E-06 1.3E-10 68.0 6.2 116 12-128 128-270 (1188)
410 PRK12727 flagellar biosynthesi 98.1 7.1E-05 1.5E-09 57.1 11.3 139 9-159 350-523 (559)
411 KOG0469 Elongation factor 2 [T 98.1 1.8E-05 3.8E-10 59.4 7.9 127 7-137 17-174 (842)
412 cd02042 ParA ParA and ParB of 98.1 3.5E-05 7.5E-10 46.3 7.8 82 12-105 2-84 (104)
413 COG3640 CooC CO dehydrogenase 98.1 0.00014 3E-09 49.6 10.5 77 59-147 135-212 (255)
414 PRK14721 flhF flagellar biosyn 98.1 3.5E-05 7.6E-10 57.4 8.4 23 9-31 191-213 (420)
415 PRK11889 flhF flagellar biosyn 98.0 3.8E-05 8.3E-10 56.6 7.3 134 9-152 241-411 (436)
416 PRK12724 flagellar biosynthesi 98.0 5.9E-05 1.3E-09 56.0 8.2 23 9-31 223-245 (432)
417 PRK12726 flagellar biosynthesi 98.0 7.9E-05 1.7E-09 54.7 8.6 93 57-161 285-383 (407)
418 cd03111 CpaE_like This protein 98.0 9.3E-05 2E-09 44.7 7.6 102 13-123 3-106 (106)
419 PRK05703 flhF flagellar biosyn 98.0 9.6E-05 2.1E-09 55.5 9.2 91 57-159 299-396 (424)
420 KOG0780 Signal recognition par 97.9 4E-05 8.7E-10 55.7 6.3 98 9-106 101-238 (483)
421 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00023 5E-09 41.8 8.5 69 12-94 2-71 (99)
422 COG1419 FlhF Flagellar GTP-bin 97.9 0.00011 2.4E-09 54.0 8.1 130 9-148 203-368 (407)
423 TIGR00150 HI0065_YjeE ATPase, 97.9 7.1E-05 1.5E-09 46.9 5.9 25 10-34 23-47 (133)
424 PRK08118 topology modulation p 97.9 1.5E-05 3.2E-10 52.3 3.0 23 10-32 2-24 (167)
425 PF13207 AAA_17: AAA domain; P 97.8 1.6E-05 3.6E-10 49.0 3.1 22 11-32 1-22 (121)
426 COG0563 Adk Adenylate kinase a 97.8 1.5E-05 3.3E-10 52.7 3.0 23 10-32 1-23 (178)
427 PRK14723 flhF flagellar biosyn 97.8 0.0002 4.2E-09 57.1 9.2 140 10-159 186-362 (767)
428 PF13555 AAA_29: P-loop contai 97.8 2.5E-05 5.4E-10 42.1 3.0 21 11-31 25-45 (62)
429 PRK07261 topology modulation p 97.8 1.8E-05 4E-10 52.0 3.0 23 10-32 1-23 (171)
430 cd00009 AAA The AAA+ (ATPases 97.8 0.00021 4.6E-09 45.1 7.7 26 9-34 19-44 (151)
431 PF13671 AAA_33: AAA domain; P 97.8 2.1E-05 4.5E-10 50.0 3.0 20 12-31 2-21 (143)
432 KOG1534 Putative transcription 97.8 3.4E-05 7.3E-10 51.7 4.0 24 8-31 2-25 (273)
433 TIGR02475 CobW cobalamin biosy 97.8 0.00036 7.7E-09 51.0 9.6 21 12-32 7-27 (341)
434 KOG2485 Conserved ATP/GTP bind 97.8 7E-05 1.5E-09 53.0 5.5 60 7-68 141-206 (335)
435 PRK06995 flhF flagellar biosyn 97.8 0.00018 4E-09 54.6 7.9 22 10-31 257-278 (484)
436 PF11111 CENP-M: Centromere pr 97.7 0.0012 2.5E-08 43.1 10.3 137 3-163 9-145 (176)
437 COG0802 Predicted ATPase or ki 97.7 0.00014 3.1E-09 46.1 6.0 61 10-70 26-86 (149)
438 KOG1424 Predicted GTP-binding 97.7 4.3E-05 9.2E-10 57.4 4.2 54 9-67 314-368 (562)
439 PRK10646 ADP-binding protein; 97.7 0.00023 5E-09 45.7 6.9 24 11-34 30-53 (153)
440 PRK12723 flagellar biosynthesi 97.7 0.0012 2.6E-08 49.1 11.5 139 9-159 174-351 (388)
441 PRK06731 flhF flagellar biosyn 97.7 0.00017 3.6E-09 50.9 6.5 139 10-160 76-251 (270)
442 PF13521 AAA_28: AAA domain; P 97.7 2.5E-05 5.5E-10 50.9 2.2 22 11-32 1-22 (163)
443 COG1116 TauB ABC-type nitrate/ 97.7 3.7E-05 8.1E-10 52.8 3.0 21 12-32 32-52 (248)
444 COG1126 GlnQ ABC-type polar am 97.7 3.9E-05 8.5E-10 51.6 2.9 23 11-33 30-52 (240)
445 cd01131 PilT Pilus retraction 97.7 0.00031 6.7E-09 47.4 7.2 22 12-33 4-25 (198)
446 PF05621 TniB: Bacterial TniB 97.6 0.00019 4E-09 51.0 6.1 106 5-124 57-190 (302)
447 COG1136 SalX ABC-type antimicr 97.6 4.4E-05 9.4E-10 52.1 2.9 23 11-33 33-55 (226)
448 cd02019 NK Nucleoside/nucleoti 97.6 5.8E-05 1.2E-09 41.9 2.9 22 12-33 2-23 (69)
449 cd02036 MinD Bacterial cell di 97.6 0.0036 7.8E-08 41.2 11.9 84 59-149 64-147 (179)
450 TIGR00235 udk uridine kinase. 97.6 7.5E-05 1.6E-09 50.7 3.8 26 6-31 3-28 (207)
451 COG0194 Gmk Guanylate kinase [ 97.6 6.3E-05 1.4E-09 49.5 3.0 24 10-33 5-28 (191)
452 cd03110 Fer4_NifH_child This p 97.6 0.001 2.2E-08 44.0 8.9 86 56-150 91-176 (179)
453 KOG1533 Predicted GTPase [Gene 97.6 5.4E-05 1.2E-09 51.5 2.7 68 58-127 97-176 (290)
454 PF02367 UPF0079: Uncharacteri 97.6 0.0001 2.2E-09 45.6 3.7 23 11-33 17-39 (123)
455 PF00005 ABC_tran: ABC transpo 97.6 7.1E-05 1.5E-09 47.2 3.1 24 10-33 12-35 (137)
456 PRK13851 type IV secretion sys 97.6 0.00078 1.7E-08 49.2 8.4 27 8-34 161-187 (344)
457 PRK14530 adenylate kinase; Pro 97.5 8.5E-05 1.8E-09 50.7 3.3 22 10-31 4-25 (215)
458 PTZ00088 adenylate kinase 1; P 97.5 9.8E-05 2.1E-09 50.8 3.6 26 7-32 4-29 (229)
459 smart00382 AAA ATPases associa 97.5 9E-05 2E-09 46.4 3.2 27 10-36 3-29 (148)
460 PRK06217 hypothetical protein; 97.5 8.6E-05 1.9E-09 49.4 3.2 23 10-32 2-24 (183)
461 KOG2484 GTPase [General functi 97.5 8.5E-05 1.8E-09 54.2 3.2 57 7-67 250-306 (435)
462 PF00004 AAA: ATPase family as 97.5 9.2E-05 2E-09 46.2 3.0 22 12-33 1-22 (132)
463 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0013 2.9E-08 43.5 8.5 25 10-34 26-50 (177)
464 cd00071 GMPK Guanosine monopho 97.5 9.6E-05 2.1E-09 46.8 3.0 21 12-32 2-22 (137)
465 PF13238 AAA_18: AAA domain; P 97.5 9.4E-05 2E-09 45.9 2.9 21 12-32 1-21 (129)
466 PRK10078 ribose 1,5-bisphospho 97.5 0.0001 2.2E-09 49.2 3.2 22 11-32 4-25 (186)
467 PRK03839 putative kinase; Prov 97.5 9.8E-05 2.1E-09 48.9 3.0 22 11-32 2-23 (180)
468 PRK13900 type IV secretion sys 97.5 0.00068 1.5E-08 49.3 7.5 27 8-34 159-185 (332)
469 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00011 2.4E-09 44.2 2.8 21 10-30 16-36 (107)
470 TIGR02322 phosphon_PhnN phosph 97.5 0.0001 2.2E-09 48.8 2.9 22 11-32 3-24 (179)
471 PRK14738 gmk guanylate kinase; 97.5 0.00016 3.4E-09 49.1 3.7 27 6-32 10-36 (206)
472 PF07728 AAA_5: AAA domain (dy 97.5 0.00012 2.6E-09 46.4 3.0 22 11-32 1-22 (139)
473 PF04665 Pox_A32: Poxvirus A32 97.5 0.00013 2.8E-09 50.4 3.3 25 8-32 12-36 (241)
474 COG0541 Ffh Signal recognition 97.5 0.00049 1.1E-08 51.0 6.3 114 7-126 98-251 (451)
475 COG3839 MalK ABC-type sugar tr 97.5 0.00011 2.4E-09 53.1 3.0 21 12-32 32-52 (338)
476 cd01130 VirB11-like_ATPase Typ 97.4 0.00014 3.1E-09 48.5 3.2 25 9-33 25-49 (186)
477 COG1117 PstB ABC-type phosphat 97.4 0.00013 2.8E-09 49.2 2.8 20 11-30 35-54 (253)
478 COG1120 FepC ABC-type cobalami 97.4 0.00013 2.9E-09 50.7 3.0 21 11-31 30-50 (258)
479 cd03238 ABC_UvrA The excision 97.4 0.00015 3.3E-09 47.9 3.2 22 9-30 21-42 (176)
480 TIGR03263 guanyl_kin guanylate 97.4 0.00014 3.1E-09 48.1 3.0 22 11-32 3-24 (180)
481 PRK14737 gmk guanylate kinase; 97.4 0.00014 3.1E-09 48.5 3.1 24 10-33 5-28 (186)
482 PRK14532 adenylate kinase; Pro 97.4 0.00014 3E-09 48.5 3.0 22 11-32 2-23 (188)
483 PRK05541 adenylylsulfate kinas 97.4 0.00021 4.6E-09 47.2 3.8 25 8-32 6-30 (176)
484 PF03205 MobB: Molybdopterin g 97.4 0.00016 3.4E-09 46.0 3.0 23 11-33 2-24 (140)
485 PRK01889 GTPase RsgA; Reviewed 97.4 0.00024 5.3E-09 52.2 4.4 25 10-34 196-220 (356)
486 PRK10751 molybdopterin-guanine 97.4 0.00021 4.6E-09 46.9 3.7 23 10-32 7-29 (173)
487 PRK08233 hypothetical protein; 97.4 0.00019 4.1E-09 47.5 3.5 24 9-32 3-26 (182)
488 PF03215 Rad17: Rad17 cell cyc 97.4 0.0008 1.7E-08 51.8 7.2 21 12-32 48-68 (519)
489 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00015 3.3E-09 48.2 3.0 21 11-31 5-25 (188)
490 PRK13833 conjugal transfer pro 97.4 0.001 2.3E-08 48.1 7.2 25 9-33 144-168 (323)
491 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0014 3E-08 46.3 7.7 23 11-33 82-104 (264)
492 PRK05480 uridine/cytidine kina 97.4 0.0002 4.4E-09 48.6 3.4 25 8-32 5-29 (209)
493 PRK13949 shikimate kinase; Pro 97.4 0.00019 4.1E-09 47.2 3.1 22 11-32 3-24 (169)
494 PRK14531 adenylate kinase; Pro 97.4 0.00019 4.1E-09 47.7 3.1 24 9-32 2-25 (183)
495 cd02023 UMPK Uridine monophosp 97.3 0.00018 3.9E-09 48.4 2.9 21 12-32 2-22 (198)
496 COG0552 FtsY Signal recognitio 97.3 0.0014 3E-08 47.1 7.3 143 7-162 137-326 (340)
497 PLN02200 adenylate kinase fami 97.3 0.00029 6.4E-09 48.7 3.9 24 8-31 42-65 (234)
498 PRK02496 adk adenylate kinase; 97.3 0.00023 5.1E-09 47.3 3.2 23 10-32 2-24 (184)
499 cd01428 ADK Adenylate kinase ( 97.3 0.0002 4.3E-09 47.9 2.8 22 11-32 1-22 (194)
500 PRK00625 shikimate kinase; Pro 97.3 0.00023 4.9E-09 46.9 3.0 21 11-31 2-22 (173)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-45 Score=234.05 Aligned_cols=163 Identities=42% Similarity=0.709 Sum_probs=157.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
-..-+||+++|++|+|||+|+.|+..+.+...+.+|.++++..+.+.+++..++++||||+||++|++....||+++|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe-EEEEecCCCCChHHHhh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKVCLM 164 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~ 164 (170)
|+|||+++.+||..+..|+.++.++...++|.++|+||+|+.+.+.++.++++.++.+++++ ++++||+++.++++.|.
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999998
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
.|+.
T Consensus 166 ~la~ 169 (205)
T KOG0084|consen 166 TLAK 169 (205)
T ss_pred HHHH
Confidence 8764
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-43 Score=229.50 Aligned_cols=168 Identities=44% Similarity=0.736 Sum_probs=160.3
Q ss_pred CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC
Q 030880 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (170)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 81 (170)
...+...-+||+++|+++||||+|+.++..+.+...+..+.++++..+.+..++..+++++|||+||+++.++...|+++
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 33455677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
|+++++|||+++..||+++..|+..+..+...++|.++||||+|+..+++++.+.+++++.++|+.|+++||++|.||++
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC
Q 030880 162 CLMLHPNT 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
.|-.|+..
T Consensus 165 aF~~La~~ 172 (207)
T KOG0078|consen 165 AFLSLARD 172 (207)
T ss_pred HHHHHHHH
Confidence 99888654
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-43 Score=223.54 Aligned_cols=164 Identities=81% Similarity=1.165 Sum_probs=156.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
+.+.+|++++|+.++||||||+++.++.+...|.++.+.++..+++.+.+..+++++|||+||++|+++.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
|+|||+++..||+...+|++.+....+. ++.+++||||.|+.+++++..+++...++++++.|+++|++.|.||.++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999988875 588999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.|+..
T Consensus 179 rIaa~ 183 (221)
T KOG0094|consen 179 RIAAA 183 (221)
T ss_pred HHHHh
Confidence 87643
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-42 Score=222.09 Aligned_cols=164 Identities=40% Similarity=0.772 Sum_probs=156.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+|++++|+.++|||||+.|+..+.+.....++.+..+....+.+.+..+++.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45789999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||+++.+||..++.|+.++.+...+++-+.++|||+|+.+.+++..+++..+++..+..|+++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888888999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 030880 167 PNTV 170 (170)
Q Consensus 167 ~~~i 170 (170)
++.+
T Consensus 163 a~~l 166 (200)
T KOG0092|consen 163 AEKL 166 (200)
T ss_pred HHhc
Confidence 7754
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.1e-41 Score=225.24 Aligned_cols=159 Identities=35% Similarity=0.659 Sum_probs=146.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+.|+++|+.|+|||||++++..+.+...+.++.+.++..+.+..++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888888888888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+++++||+++..|+..+......+.|+++|+||+|+.+.+++..+++.+++++. ++.|++|||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776678999999999999878888889999999875 789999999999999999999875
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-41 Score=215.83 Aligned_cols=164 Identities=38% Similarity=0.708 Sum_probs=156.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
.....+|++++|+.|+|||+|+.+++...+.+.+..|.+.++..+.+++++..+++++|||+|++.+++....|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++|||+++++||..+..|+..++++..++.-+++++||+|+...+.++.+|++.|+++.|..++++|+++++|+.|.|-
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999997
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
..+.
T Consensus 162 nta~ 165 (216)
T KOG0098|consen 162 NTAK 165 (216)
T ss_pred HHHH
Confidence 6543
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-40 Score=221.17 Aligned_cols=161 Identities=34% Similarity=0.583 Sum_probs=148.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|..|+|||||+.++..+.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999988877777777777777777788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||+++++||+.+..|+.++.... ++.|++||+||.|+...+.+..++++.+++..++.|++|||++|.||+++|++|+
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999997765 6899999999999987778889999999999999999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 164 ~~ 165 (189)
T cd04121 164 RI 165 (189)
T ss_pred HH
Confidence 53
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4e-41 Score=208.82 Aligned_cols=163 Identities=39% Similarity=0.696 Sum_probs=154.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|.+|+|||+|+.++..+.+.+....+.+.++..+.+.+++..+++.+|||+|+++|+.+.+.|++++.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 44599999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++.+++|.++..|+.++..++. +++..++|+||+|....+.++.+++..+++++++.|+++||++.+|+...|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999998875 77888999999999888999999999999999999999999999999999988
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 169 lveK 172 (209)
T KOG0080|consen 169 LVEK 172 (209)
T ss_pred HHHH
Confidence 7643
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=210.53 Aligned_cols=168 Identities=38% Similarity=0.617 Sum_probs=155.3
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|++......+||+++|++|+|||||++++.++++...+..+.+.++..+.+.+++..+.++||||+|+++|.++-..+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 66666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCc--cccCHHHHHHHHhhcC-CeEEEEec
Q 030880 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELN-VMFIETSA 153 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~ 153 (170)
++|+++++||+++++||+.+..|..++..... ..-|+||+|||+|+.+. ++++...+..||+..| ++||++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999988765 45689999999999653 7889999999998876 79999999
Q ss_pred CCCCChHHHhhcCCC
Q 030880 154 KAGFNIKVCLMLHPN 168 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~ 168 (170)
+...||++.|+.++.
T Consensus 161 K~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 161 KEATNVDEAFEEIAR 175 (210)
T ss_pred cccccHHHHHHHHHH
Confidence 999999999988754
No 10
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.7e-39 Score=211.36 Aligned_cols=161 Identities=34% Similarity=0.661 Sum_probs=147.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+...+..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999988887777777777777777888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++|+.+..|+..+.....++.|+++|+||+|+.++..+..+++..+++..++.++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776678999999999999888888889999999999999999999999999999998865
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 162 ~ 162 (166)
T cd04122 162 K 162 (166)
T ss_pred H
Confidence 3
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.3e-39 Score=212.54 Aligned_cols=158 Identities=35% Similarity=0.568 Sum_probs=141.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+|++++|++|+|||+|+.++..+.+...+.++.+..+ ...+..++..+++.+|||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887444 555667888899999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCcc----------ccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880 90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 90 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (170)
|+++++||+.+ ..|+..+.... .+.|++||+||+|+.+.+ .+..+++.++++..++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987765 579999999999996543 4788999999999998 69999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
||+++|+.+++.
T Consensus 160 nV~~~F~~~~~~ 171 (176)
T cd04133 160 NVKAVFDAAIKV 171 (176)
T ss_pred CHHHHHHHHHHH
Confidence 999999988753
No 12
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.3e-38 Score=207.80 Aligned_cols=160 Identities=37% Similarity=0.635 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++..+.+.+.+.++.+.+.....+...+..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888887777777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++|+.+..|+..+......+.|+++|+||.|+..++.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765679999999999998888888899999999999999999999999999999999865
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.4e-39 Score=212.31 Aligned_cols=160 Identities=25% Similarity=0.472 Sum_probs=143.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++..+.+...+.|+.+.. +...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~-~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee-eEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 456899999999999999999999999988888888744 4566778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.+++++.++ .|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 89999998765 6799999999999854 245889999999999996 999999
Q ss_pred cCCCCC-hHHHhhcCCC
Q 030880 153 AKAGFN-IKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~-i~~~~~~l~~ 168 (170)
|++|.| |+++|+.+++
T Consensus 161 Ak~~~n~v~~~F~~~~~ 177 (182)
T cd04172 161 ALQSENSVRDIFHVATL 177 (182)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 999998 9999998764
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.9e-40 Score=201.83 Aligned_cols=159 Identities=40% Similarity=0.698 Sum_probs=152.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
++.+++|++|+|||+|+.++..+.+...|..+.+.+...+++.+++..+++.|||++|+++|+.+...|+++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|+++.+||.+.++|+.++++.+ +.+|-++|+||+|..+.+.+..++++.|+...|+.+|++|+++.+|+...|.-|.++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999887 589999999999999999999999999999999999999999999999999877543
No 15
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.5e-38 Score=212.63 Aligned_cols=160 Identities=31% Similarity=0.476 Sum_probs=140.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|+.|+|||||+.++..+.+...+.|+.+.. +.....+++..+.+.+|||+|+++|..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 45899999999999999999999999988888888744 44456678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEec
Q 030880 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA 153 (170)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~ 153 (170)
|||+++++||+.+. .|+..+.... .++|++||+||.|+.+. ..+..+++..++++.+ +.|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 5888776654 57999999999999644 2356788999999998 59999999
Q ss_pred CCCCChHHHhhcCCCC
Q 030880 154 KAGFNIKVCLMLHPNT 169 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (170)
++|.|++++|++|++.
T Consensus 160 k~g~~v~e~f~~l~~~ 175 (191)
T cd01875 160 LNQDGVKEVFAEAVRA 175 (191)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998753
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.4e-38 Score=209.47 Aligned_cols=160 Identities=33% Similarity=0.511 Sum_probs=143.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|.+|+|||||++++..+.+...+.++.+ ..+...+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-ceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877778776 33345566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||+++++||+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..++++.+++|++|||++|.||+++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887654 36799999999999987778888899999999999999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 161 ~~ 162 (172)
T cd04141 161 RE 162 (172)
T ss_pred HH
Confidence 53
No 17
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-39 Score=198.39 Aligned_cols=160 Identities=38% Similarity=0.680 Sum_probs=152.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+|++++|...+|||+|+.++.+..+...+.++.+.++..+++.-...++++++|||.|+++|+.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 45799999999999999999999999999999999999988888777788999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
+||++|.+||..++.|...+..+++.+.|+|+++||||+.+++.++.+.+..+++++|..||++|++.+.|+..+|+.+.
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
No 18
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-39 Score=208.37 Aligned_cols=163 Identities=37% Similarity=0.693 Sum_probs=156.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
..-+||+++|++++|||-|+.++..+.+.....+|.+.++......++++.++.+||||+||++|+.....|++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++.+.+|+.+.+|+.+++.+...++++++|+||+|+...+.+..++++.+++..+..++++||.++.|+.+.|+.+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
..+
T Consensus 172 l~~ 174 (222)
T KOG0087|consen 172 LTE 174 (222)
T ss_pred HHH
Confidence 543
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.6e-38 Score=208.97 Aligned_cols=158 Identities=26% Similarity=0.502 Sum_probs=140.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888876444 45677888999999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEecC
Q 030880 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (170)
||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.+++++.++ .|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 88999998775 5799999999999854 235788999999999997 89999999
Q ss_pred CCCC-hHHHhhcCCC
Q 030880 155 AGFN-IKVCLMLHPN 168 (170)
Q Consensus 155 ~~~~-i~~~~~~l~~ 168 (170)
+|+| ++++|..+++
T Consensus 159 ~~~~~v~~~F~~~~~ 173 (178)
T cd04131 159 TSEKSVRDIFHVATM 173 (178)
T ss_pred cCCcCHHHHHHHHHH
Confidence 9995 9999988754
No 20
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.7e-38 Score=206.43 Aligned_cols=159 Identities=37% Similarity=0.683 Sum_probs=144.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888776666666666777899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|++++++++.+..|+..+......+.|+++++||+|+.+.+.+..+++.++++..+++++++|+++|.|++++|+++.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999998776668999999999999877777788888999999999999999999999999999865
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.4e-38 Score=214.38 Aligned_cols=160 Identities=27% Similarity=0.459 Sum_probs=143.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||+|+.++..+.+...+.|+.+..+ ...+..++..+.+.+|||+|++.|..+...+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4578999999999999999999999999888888887444 455778889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||+++++||+. +..|+.++.... ++.|+++|+||+|+.+ .+.+..+++++++++.++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 589999998765 5789999999999854 256889999999999999 699999
Q ss_pred cCCCC-ChHHHhhcCCC
Q 030880 153 AKAGF-NIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~-~i~~~~~~l~~ 168 (170)
|++|. |++++|..+++
T Consensus 169 Aktg~~~V~e~F~~~~~ 185 (232)
T cd04174 169 AFTSEKSIHSIFRSASL 185 (232)
T ss_pred CCcCCcCHHHHHHHHHH
Confidence 99998 89999998764
No 22
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.7e-38 Score=205.94 Aligned_cols=161 Identities=42% Similarity=0.739 Sum_probs=147.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999999998888888888777777777788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++|+.+..|+..+......+.|+++++||+|+.+...+..+++..++...+++++++|+++|.|++++|+++.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877777888899999999999999999999999999999875
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 163 ~ 163 (167)
T cd01867 163 D 163 (167)
T ss_pred H
Confidence 4
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.3e-38 Score=211.03 Aligned_cols=160 Identities=36% Similarity=0.597 Sum_probs=144.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888877777777777 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHh
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 163 (170)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.+...+..+++.++++..+ ..++++|+++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886542 2578999999999997667778899999999999 699999999999999999
Q ss_pred hcCCCC
Q 030880 164 MLHPNT 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|++.
T Consensus 161 ~~l~~~ 166 (201)
T cd04107 161 RFLVKN 166 (201)
T ss_pred HHHHHH
Confidence 998753
No 24
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=7.2e-38 Score=205.26 Aligned_cols=161 Identities=40% Similarity=0.728 Sum_probs=146.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999988777778877777777777788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..+++..+++++++|+++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776567999999999999877778888999999999999999999999999999999875
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 162 ~ 162 (166)
T cd01869 162 E 162 (166)
T ss_pred H
Confidence 3
No 25
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.1e-38 Score=204.48 Aligned_cols=159 Identities=42% Similarity=0.716 Sum_probs=150.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++++..+...+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888888888889999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+++++||+.+..|+..+......+.|++|++||.|+.+.+.++.+++++++++++++|+++|++++.|+.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999998887679999999999998888999999999999999999999999999999999988654
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.1e-37 Score=203.72 Aligned_cols=161 Identities=34% Similarity=0.526 Sum_probs=142.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
++||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999888777777765 45556677788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++.+..|+..+..... .+.|+++++||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999877643 6799999999999977667777788888888889999999999999999999987
Q ss_pred CCC
Q 030880 168 NTV 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 653
No 27
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.3e-37 Score=201.92 Aligned_cols=161 Identities=37% Similarity=0.711 Sum_probs=147.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777777777777777888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|+++++++..+..|+..+.....++.|+++++||.|+.+...+..+++..++...++.++++|++++.|++++|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887777889999999999998777788899999999999999999999999999999999876
Q ss_pred C
Q 030880 170 V 170 (170)
Q Consensus 170 i 170 (170)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.4e-37 Score=205.28 Aligned_cols=158 Identities=30% Similarity=0.477 Sum_probs=138.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+.++..+.+...+.|+.+..+ ...+...+..+.+.+||++|++++..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 6899999999999999999999999888888887444 445667788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+. +.+..+++.+++++.+ +.|+++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999986 5888887654 57999999999998543 4577888999999887 6999999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
|.|++++|+.+++.
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988753
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-37 Score=206.85 Aligned_cols=158 Identities=22% Similarity=0.508 Sum_probs=139.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|+.|+|||||++++..+.+...+.|+.+.++..+.+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899888887778888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-----ccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-----KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
|++++++++++..|+..+........| ++|+||+|+.. ......+++.++++..++.++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555567 67899999852 122234677888999999999999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
++++
T Consensus 160 ~l~~ 163 (182)
T cd04128 160 IVLA 163 (182)
T ss_pred HHHH
Confidence 9865
No 30
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-38 Score=196.29 Aligned_cols=161 Identities=37% Similarity=0.675 Sum_probs=153.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.-+|++++|+.|+|||+|+.++..+++.+....+.+.++..+.+.+.++.++++||||+|+++|++....|++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 34799999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++++++|+.+..|+..++....+++-+++++||.|+.+++++...++..++++..+.+.++|+++|+|+.|.|-..+
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999986554
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 168 ~ 168 (214)
T KOG0086|consen 168 R 168 (214)
T ss_pred H
Confidence 3
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.7e-37 Score=205.98 Aligned_cols=162 Identities=38% Similarity=0.641 Sum_probs=143.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC----------CeEEEEEEEeCCCcccccccchh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+... +..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999888888887766665555443 45688999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (170)
+++++|++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++++.+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987654 357899999999999877778888999999999999999999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
.|++++|++|++.
T Consensus 163 ~~v~~l~~~l~~~ 175 (180)
T cd04127 163 TNVEKAVERLLDL 175 (180)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998753
No 32
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.1e-37 Score=209.80 Aligned_cols=165 Identities=36% Similarity=0.657 Sum_probs=150.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++++..++..+++++++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 34466899999999999999999999998877778888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++|||++++++|+.+..|+..+......+.|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777888889999999999999999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|++.
T Consensus 168 ~l~~~ 172 (216)
T PLN03110 168 TILLE 172 (216)
T ss_pred HHHHH
Confidence 98653
No 33
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-38 Score=195.13 Aligned_cols=159 Identities=38% Similarity=0.668 Sum_probs=153.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
-+||+++|..|+|||+|++++..+.+++....+.+.++..+++.+.++.+++++|||+|+++|++....|++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++...+|+-+..|+.++.++...++-.|+|+||+|+.+.++++.+.++++++....-|.++|+++..|++.+|..++
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 9999999999999999999999988899999999999999999999999999999888999999999999999998875
No 34
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.8e-37 Score=202.61 Aligned_cols=160 Identities=30% Similarity=0.559 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888887777888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
|++++++++.+..|+..+..... .+.|+++|+||+|+.++.....++...++...+++++++|+++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987653 4689999999999976666778888889998899999999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|.+.
T Consensus 161 ~l~~~ 165 (168)
T cd04119 161 TLFSS 165 (168)
T ss_pred HHHHH
Confidence 98754
No 35
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.3e-37 Score=202.50 Aligned_cols=160 Identities=31% Similarity=0.510 Sum_probs=141.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
++||+++|.+|+|||||++++..+.+...+.++.+.. ........+..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988877777776633 345666778889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++.+..|+..+.... ..+.|+++++||+|+.+...+..+++..+++..+++++++||++|.|++++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999987654 36899999999999987777777788889888999999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (164)
T cd04175 160 RQ 161 (164)
T ss_pred HH
Confidence 64
No 36
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.1e-37 Score=200.37 Aligned_cols=162 Identities=40% Similarity=0.702 Sum_probs=145.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988887777777767767777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++++++.+..|+..+......+.|+++|+||+|+.........++..+++..+. .++++|+++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667899999999999987777788889999998886 78999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 765
No 37
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.2e-37 Score=200.63 Aligned_cols=161 Identities=37% Similarity=0.714 Sum_probs=146.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++++..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988777788888777777788888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++++.+..|+..+......++|+++|+||.|+...+.+..++...++...++.++++||++|.|++++|++|.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877667999999999999877777888889999888999999999999999999999875
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 163 ~ 163 (165)
T cd01868 163 E 163 (165)
T ss_pred H
Confidence 4
No 38
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.8e-37 Score=204.72 Aligned_cols=160 Identities=42% Similarity=0.712 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777888877777777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+........|+++++||+|+.+...+..+++..+++..+++++++|+++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766679999999999998777788888899999999999999999999999999998653
No 39
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.5e-37 Score=201.91 Aligned_cols=159 Identities=31% Similarity=0.509 Sum_probs=139.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+.++..+.+...+.|+.. +.+......++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999998888888775 444556667888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
|+++++||+.+. .|+..+.... ++.|+++|+||+|+.+. ..+..+++..++++++. .+++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888776654 58999999999998542 24778999999999995 999999999
Q ss_pred CCChHHHhhcCCCCC
Q 030880 156 GFNIKVCLMLHPNTV 170 (170)
Q Consensus 156 ~~~i~~~~~~l~~~i 170 (170)
|.|++++|+.+++.+
T Consensus 160 ~~~i~~~f~~l~~~~ 174 (174)
T cd01871 160 QKGLKTVFDEAIRAV 174 (174)
T ss_pred cCCHHHHHHHHHHhC
Confidence 999999999987653
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.2e-37 Score=208.71 Aligned_cols=159 Identities=36% Similarity=0.550 Sum_probs=144.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888889988888877777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.+++.++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887653 45789999999999877778888999999999999999999999999999999
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|++
T Consensus 161 l~~ 163 (215)
T cd04109 161 LAA 163 (215)
T ss_pred HHH
Confidence 865
No 41
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.9e-37 Score=200.68 Aligned_cols=161 Identities=37% Similarity=0.717 Sum_probs=146.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+....+.+||+||++++..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988777777777777777777888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++++.+..|+..+.....++.|+++|+||.|+..+..+..+++..++...++.++++|++++.|++++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877778888899999999999999999999999999998865
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 164 ~ 164 (168)
T cd01866 164 E 164 (168)
T ss_pred H
Confidence 3
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=204.69 Aligned_cols=162 Identities=31% Similarity=0.534 Sum_probs=143.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+..+||+++|++|+|||||++++.++.+...+.++.+..+ .+.+..++..+.+.+|||||++++..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999988777777776443 556677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++++|+.+..|+..+..... .+.|+++++||+|+.+...+...++..+++..+++++++||++|.|++++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998877643 58899999999999777777778888888888999999999999999999999
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|++.
T Consensus 162 l~~~ 165 (189)
T PTZ00369 162 LVRE 165 (189)
T ss_pred HHHH
Confidence 8653
No 43
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.6e-37 Score=199.12 Aligned_cols=159 Identities=36% Similarity=0.675 Sum_probs=143.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC--CeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+||+++|++|+|||||++++.++.+...+.++.+.++....+... +..+++.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887778888777766666666 778899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.....+..+++..+++..+++++++|+++|.|++++|++|+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999886554 5799999999999987777888889999999999999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.4e-37 Score=205.23 Aligned_cols=160 Identities=38% Similarity=0.683 Sum_probs=145.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999998877778888777777777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++++++|+.+..|+..+.... ...|++||+||+|+.+...+...++..++...++.++++|+++|.|++++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999987655 6789999999999987777778889999999999999999999999999999986
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 164 ~ 164 (199)
T cd04110 164 E 164 (199)
T ss_pred H
Confidence 5
No 45
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1e-36 Score=199.17 Aligned_cols=161 Identities=34% Similarity=0.536 Sum_probs=142.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
++||+++|.+|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777654 45556677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++++..|+..+..... .++|+++|+||+|+.+...+...++..++...+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877643 6899999999999976666677778888888889999999999999999999987
Q ss_pred CCC
Q 030880 168 NTV 170 (170)
Q Consensus 168 ~~i 170 (170)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 653
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.6e-37 Score=208.39 Aligned_cols=160 Identities=30% Similarity=0.571 Sum_probs=141.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++..+.+...+.++.+.+.....+...+..+++.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999988888888887877777777777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.. ..+..+++ .+++..++.|+++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998765 6799999999999853 33444445 7777888999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 168 ~~~ 170 (219)
T PLN03071 168 ARK 170 (219)
T ss_pred HHH
Confidence 753
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.1e-37 Score=206.71 Aligned_cols=161 Identities=39% Similarity=0.727 Sum_probs=144.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.+||+++|++|+|||||++++.++.+...+.++.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777888887877777765 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++++|+++..|+..+..... ...|++|++||.|+.+...+..+++.++++..++.++++|+++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999877653 467889999999998777788889999999999999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 162 ~~~ 164 (211)
T cd04111 162 TQE 164 (211)
T ss_pred HHH
Confidence 753
No 48
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.6e-36 Score=197.88 Aligned_cols=163 Identities=39% Similarity=0.605 Sum_probs=144.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45689999999999999999999999888777777777776777778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKV 161 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 161 (170)
+|||++++++++.+..|+..+..... .+.|+++++||+|+. .+.+..+++.+++++.+. .++++||++|.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988876542 468999999999986 556678889999998885 899999999999999
Q ss_pred HhhcCCCCC
Q 030880 162 CLMLHPNTV 170 (170)
Q Consensus 162 ~~~~l~~~i 170 (170)
+|+++++++
T Consensus 162 ~~~~~~~~~ 170 (170)
T cd04116 162 AFEEAVRRV 170 (170)
T ss_pred HHHHHHhhC
Confidence 999998764
No 49
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2e-36 Score=198.23 Aligned_cols=158 Identities=33% Similarity=0.483 Sum_probs=138.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+ ..+..........+.+.+||+||++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777665 333444556677889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+...++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766532 579999999999997766777788888888889999999999999999999998
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
++
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.4e-37 Score=204.75 Aligned_cols=158 Identities=35% Similarity=0.568 Sum_probs=139.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|.+|+|||||+++|..+.+...+.++.+.. .......++..+.+.+|||||+++|..++..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999999999999988877777776533 34455677888899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
++++++|+.+..|+..+..... .+.|+++|+||+|+.+...+...++..++..+++.++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5789999999999987777888888889999999999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (190)
T cd04144 160 RA 161 (190)
T ss_pred HH
Confidence 53
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.1e-36 Score=198.07 Aligned_cols=158 Identities=35% Similarity=0.610 Sum_probs=140.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++|+|||||++++..+.+...+.++.+.++........+..+.+.+||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888877777788888999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
++++++++.+..|+..+.... ....|+++|+||.|+.+... ...+++..+++++++.++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999986654 34578999999999865433 345677888888899999999999999999999886
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 162 ~ 162 (170)
T cd04108 162 A 162 (170)
T ss_pred H
Confidence 5
No 52
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-36 Score=203.19 Aligned_cols=160 Identities=41% Similarity=0.749 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+||+++|++|+|||||++++..+.+.. .+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5566766666666677788889999999999999999899999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++++++..|+..+......+.|+++++||+|+..++.+..+++..++..++++|+++|+++|.|++++|++|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999777777788899999999999999999999999999999865
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 161 ~ 161 (191)
T cd04112 161 E 161 (191)
T ss_pred H
Confidence 3
No 53
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.4e-36 Score=205.90 Aligned_cols=155 Identities=35% Similarity=0.575 Sum_probs=134.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.+.. +.++.+.++..... ..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666655443322 4578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------ccccCHHHHHHHHhhcC-----
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN----- 145 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (170)
|++++++|+.+..|+..+......++|+++|+||+|+.+ .+.+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888766557799999999999965 57788899999999876
Q ss_pred ---------CeEEEEecCCCCChHHHhhcCCCC
Q 030880 146 ---------VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 146 ---------~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+.|++|||++|.||+++|..+++.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999998754
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.6e-36 Score=197.78 Aligned_cols=157 Identities=31% Similarity=0.598 Sum_probs=137.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777888877777776667778899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+..... +.|+++++||+|+.. .... .+..++++..++.++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988764 899999999999863 3333 34556777778899999999999999999998754
No 55
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.3e-36 Score=196.41 Aligned_cols=159 Identities=31% Similarity=0.535 Sum_probs=139.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
++||+++|++|+|||||++++.++.+...+.++.+ +.......+++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999988777777765 33455566778888899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++.+..|+..+.+... .+.|+++|+||+|+.+ ......++..+++..+++++++|+++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988877653 5799999999999865 45567788888888899999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 159 ~~ 160 (162)
T cd04138 159 RE 160 (162)
T ss_pred HH
Confidence 64
No 56
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=203.73 Aligned_cols=162 Identities=35% Similarity=0.698 Sum_probs=147.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||++|++.+...+..+++++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999887777788877777777778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++++||+|+.+.+.+..+++.++++..++.++++|++++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766789999999999998777788899999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
++
T Consensus 164 ~~ 165 (210)
T PLN03108 164 AA 165 (210)
T ss_pred HH
Confidence 64
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.5e-36 Score=197.57 Aligned_cols=159 Identities=36% Similarity=0.562 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+ +........++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777666665 444555667788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|++++++++.+..|+..+.+... .+.|+++++||+|+.+.+....+++..+++..+++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 57899999999999776777778888899989999999999999999999999875
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 160 ~ 160 (164)
T smart00173 160 E 160 (164)
T ss_pred H
Confidence 4
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.2e-36 Score=196.43 Aligned_cols=160 Identities=33% Similarity=0.529 Sum_probs=140.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.++.+...+.++.+ +.........+..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999887777666665 33344556778788999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++.+..|+..+.+.. ..+.|+++++||+|+..+..+..+++.++++..+++++++|+++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887754 36789999999999977777777788899998899999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 161 ~~ 162 (164)
T cd04145 161 RV 162 (164)
T ss_pred Hh
Confidence 54
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=6.8e-36 Score=194.92 Aligned_cols=160 Identities=81% Similarity=1.168 Sum_probs=145.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+++++++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888777888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++|+.+..|+..+......+.|+++++||+|+.+......++...+++..++.++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665679999999999997677777888888888889999999999999999999998765
No 60
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.1e-36 Score=195.98 Aligned_cols=160 Identities=45% Similarity=0.775 Sum_probs=145.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777778777777777777888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++++.+..|+..+......++|+++++||+|+.....+..+.+..+++..++.++++|+++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776789999999999997767778888999999999999999999999999999998653
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7.7e-36 Score=195.04 Aligned_cols=162 Identities=45% Similarity=0.785 Sum_probs=146.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||+++++++.+...+.++.+.+.....+..++....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998776777777667677778888889999999999999998999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
||++++++++....|+..+.......+|+++++||+|+.+......++...++...++.++++|+++|.|+.++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999998766677788888999999999999999999999999999876
Q ss_pred CC
Q 030880 169 TV 170 (170)
Q Consensus 169 ~i 170 (170)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 53
No 62
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=193.58 Aligned_cols=163 Identities=38% Similarity=0.696 Sum_probs=149.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
..++++++|++-+|||+|++.+..+++..-.+|+.+.++..+.+.. ++..+++++|||+|++++++..+.|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999999999999988877654 678899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCe-EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+|||++|++||+.+..|+.+...+.. +..+ +.+|++|+|+...++++.+|++.+++..|..|+++|+++|.|+++.|.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 99999999999999999999877664 5444 578899999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030880 165 LHPNTV 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
.|+++|
T Consensus 167 mlaqeI 172 (213)
T KOG0091|consen 167 MLAQEI 172 (213)
T ss_pred HHHHHH
Confidence 887653
No 63
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9e-38 Score=193.63 Aligned_cols=163 Identities=39% Similarity=0.652 Sum_probs=153.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
+.-.+|++++|...+|||+|+-++..+++...+.++....+..+.+.+.+....+.||||+|+++|..+-+.|++++|++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34578999999999999999999999999888778877778888888889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||+++++||+.++.|..+++...+..+-++||+||+|+.+++.++.+++..+++..|+.|+++|++.+.||.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 170 Lt~ 172 (218)
T KOG0088|consen 170 LTA 172 (218)
T ss_pred HHH
Confidence 743
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4e-36 Score=200.70 Aligned_cols=158 Identities=34% Similarity=0.546 Sum_probs=135.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
.||+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3799999999999999999999998887777776443 445566777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.. .+..+++..+++..+ +.|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888887654 579999999999996543 345677888888877 6899999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
|.|++++|.+|++.
T Consensus 159 ~~~v~e~f~~l~~~ 172 (189)
T cd04134 159 NRGVNEAFTEAARV 172 (189)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998753
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=8.1e-36 Score=196.22 Aligned_cols=161 Identities=37% Similarity=0.624 Sum_probs=144.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccchhhhcCCcEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~ 87 (170)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999998887778888777777778888888999999999999886 578888999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC---CCChHHHh
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKVCL 163 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~ 163 (170)
|||++++++++.+..|+..+.... ..++|+++|+||+|+....++..+++.++++..++.|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999987764 36799999999999988888888889999999999999999999 99999999
Q ss_pred hcCCCC
Q 030880 164 MLHPNT 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
..+++.
T Consensus 162 ~~l~~~ 167 (170)
T cd04115 162 MTLAHK 167 (170)
T ss_pred HHHHHH
Confidence 988754
No 66
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.1e-35 Score=201.68 Aligned_cols=158 Identities=22% Similarity=0.484 Sum_probs=136.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||+.++..+.++..+.|+....+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 37999999999999999999999999888888887444 45677888999999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecC
Q 030880 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (170)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (170)
||++++++|+.+ ..|...+... .++.|++||+||+|+.+. ..+..+++..++++.++ .|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 4576666444 368999999999998542 13678899999999996 89999999
Q ss_pred CCCC-hHHHhhcCCC
Q 030880 155 AGFN-IKVCLMLHPN 168 (170)
Q Consensus 155 ~~~~-i~~~~~~l~~ 168 (170)
++.+ |+++|+..+.
T Consensus 159 ~~~~~V~~~F~~~~~ 173 (222)
T cd04173 159 SSERSVRDVFHVATV 173 (222)
T ss_pred cCCcCHHHHHHHHHH
Confidence 9985 9999987653
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.3e-35 Score=193.65 Aligned_cols=156 Identities=28% Similarity=0.516 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777666666666777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++.+++.+..|+..+.... ++.|+++++||+|+... ...+...+++..+++++++|+++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654 57999999999998432 2345566777778999999999999999999988653
No 68
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.2e-35 Score=197.37 Aligned_cols=158 Identities=29% Similarity=0.361 Sum_probs=129.1
Q ss_pred ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCcccceeee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 030880 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
.+||+++|+.|+|||||+. ++.++. +...+.|+.+. +.+... ..+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 565443 34455666642 222221 24678889999999999875 3
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------ccccC
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS 133 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 133 (170)
+...+++++|++++|||+++++||+.+. .|+..+.... ++.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566899999999999999999999997 5988887665 5789999999999863 36788
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 134 IEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.+++++++++.++.|++|||++|.||+++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.2e-35 Score=197.99 Aligned_cols=159 Identities=25% Similarity=0.335 Sum_probs=133.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhhhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD 81 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 81 (170)
+||+++|.+|+|||||++++.++.+...+.|+.+.+.+...+..++..+.+.+|||||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988778888776666666677888899999999997654321 2344789
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCC
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 157 (170)
+|++++|||+++++||+.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887764 3679999999999997666666677777654 568999999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|+.+++
T Consensus 161 ~v~~lf~~i~~ 171 (198)
T cd04142 161 HILLLFKELLI 171 (198)
T ss_pred CHHHHHHHHHH
Confidence 99999998764
No 70
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-35 Score=198.56 Aligned_cols=152 Identities=28% Similarity=0.561 Sum_probs=135.3
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh
Q 030880 15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR 94 (170)
Q Consensus 15 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 94 (170)
+|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+++.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888877888888888877777888899999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 95 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.||+.+..|+..+.... .++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.||+++|.+|++.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999998765 5899999999999854 3344443 46788889999999999999999999998753
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=2.1e-35 Score=194.92 Aligned_cols=156 Identities=33% Similarity=0.522 Sum_probs=135.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 91 (170)
|+++|++|+|||||++++..+.+...+.++.. .........++..+.+.+|||||++++..++..+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777665 33445566778888999999999999999999999999999999999
Q ss_pred CChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880 92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 92 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (170)
+++++|+.+. .|+..+.... +++|+++|+||+|+.+. ..+..+++..+++..+. .++++|+++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888887654 68999999999998653 23677888999999997 99999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|++++|+.+++.
T Consensus 159 ~v~~lf~~l~~~ 170 (174)
T smart00174 159 GVREVFEEAIRA 170 (174)
T ss_pred CHHHHHHHHHHH
Confidence 999999988653
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5e-35 Score=190.84 Aligned_cols=160 Identities=38% Similarity=0.681 Sum_probs=142.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666666665666666666777789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
|++++++++.+..|+.++......++|+++++||+|+.....+..++..++++..++.++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998777777788888888899999999999999999999998764
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.9e-35 Score=190.50 Aligned_cols=154 Identities=16% Similarity=0.321 Sum_probs=130.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|+.|+|||||+.++..+.+...+.++. ..+...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~--~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG--GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc--cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999888776654442 22345677788888999999999874 35678999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhc
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 165 (170)
|+++++||+++..|+..+..... .+.|+++|+||.|+. ..+.+..+++++++++. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987764 678999999999985 35677888899999876 589999999999999999999
Q ss_pred CCCCC
Q 030880 166 HPNTV 170 (170)
Q Consensus 166 l~~~i 170 (170)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 88653
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.1e-35 Score=191.36 Aligned_cols=159 Identities=34% Similarity=0.560 Sum_probs=139.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+||+++|++|+|||||++++..+ .+...+.++.+.+......... +..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667777888777766666554 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++...++..+....++.++++|+++|.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887765 579999999999997777777777778888888999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 160 ~~~ 162 (164)
T cd04101 160 ARA 162 (164)
T ss_pred HHH
Confidence 764
No 75
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=5.2e-35 Score=192.06 Aligned_cols=160 Identities=34% Similarity=0.514 Sum_probs=141.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
++||+++|++|+|||||++++.++.+...+.++.+ .........++..+.+.+||+||+++|..++..++++++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999999988777777765 34456666788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHhhcC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l 166 (170)
||++++++++....|...+.... ..+.|+++++||.|+.+.+....+++..+++..+ ++++++||++|.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999887654 3679999999999998777777788888888888 799999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.++
T Consensus 160 ~~~ 162 (168)
T cd04177 160 VRQ 162 (168)
T ss_pred HHH
Confidence 754
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3e-35 Score=196.31 Aligned_cols=157 Identities=31% Similarity=0.471 Sum_probs=134.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+||+++|++|+|||||++++.++.+...+.++...++.. .+... +..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887777777655433 34444 6778999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc----cccCHHHHHHHHhhcCC-eEEEEecCCCCChHHH
Q 030880 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVC 162 (170)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 162 (170)
||++++++|+++. .|+..+.... ++.|+++|+||.|+... ..+..+++.+++...++ .++++|+++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5887776543 67999999999998653 24667889999999998 9999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|+.+++
T Consensus 159 f~~l~~ 164 (187)
T cd04132 159 FDTAIE 164 (187)
T ss_pred HHHHHH
Confidence 998864
No 77
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.4e-34 Score=190.93 Aligned_cols=156 Identities=35% Similarity=0.521 Sum_probs=135.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+|++++|++|+|||||+.++.++.+...+.++.. +........++..+++.+||+||++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999888877777653 555556777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
|++++++|+.+. .|+..+.... ++.|+++++||+|+.+ .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999974 6888876543 5799999999999863 345677889999999998 999999999
Q ss_pred CCChHHHhhcCC
Q 030880 156 GFNIKVCLMLHP 167 (170)
Q Consensus 156 ~~~i~~~~~~l~ 167 (170)
|.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998765
No 78
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.3e-34 Score=194.13 Aligned_cols=158 Identities=36% Similarity=0.626 Sum_probs=138.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+||+++|++|+|||||++++..+.+.. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5677777667677778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc----cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+. ..+...++.+++...++.++++|+++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887654 57999999999998542 34556778888888899999999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|++
T Consensus 160 ~i~~ 163 (193)
T cd04118 160 KVAE 163 (193)
T ss_pred HHHH
Confidence 9875
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.4e-34 Score=191.01 Aligned_cols=159 Identities=28% Similarity=0.478 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777666654 444556677888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
|++++++|+.+. .|+..+... .++.|+++++||+|+.+. ..+..+++..+++..++ .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 577777655 578999999999998543 25667889999999986 899999999
Q ss_pred CCChHHHhhcCCCCC
Q 030880 156 GFNIKVCLMLHPNTV 170 (170)
Q Consensus 156 ~~~i~~~~~~l~~~i 170 (170)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987653
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=9.3e-35 Score=200.45 Aligned_cols=158 Identities=28% Similarity=0.442 Sum_probs=138.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+++++++.+...+.++.+ +...+.+.+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877777775 666667778888899999999999999888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCCh
Q 030880 90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 159 (170)
|+++++||+++..|+.++... ...++|+++|+||+|+.....+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888654 225799999999999976667777888877754 4689999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|++|++
T Consensus 160 ~elf~~L~~ 168 (247)
T cd04143 160 DEMFRALFS 168 (247)
T ss_pred HHHHHHHHH
Confidence 999999865
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4.5e-35 Score=191.81 Aligned_cols=158 Identities=31% Similarity=0.499 Sum_probs=134.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccchhhhcCCcEEEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~ 89 (170)
||+++|++|+|||||+++++.+.+...+.++.. ........+++..+.+.+||+||++.+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766666654 333455667788889999999998853 455777899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC-CChHHHhhcC
Q 030880 90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKVCLMLH 166 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l 166 (170)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++|+++| .|++++|.+|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 357999999999999777778888899999999999999999999 5999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 160 ~~~ 162 (165)
T cd04146 160 CRE 162 (165)
T ss_pred HHH
Confidence 753
No 82
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=195.71 Aligned_cols=162 Identities=38% Similarity=0.648 Sum_probs=139.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||+++|.++.+. .+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345789999999999999999999988764 4567777677667777788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 86 VVVYDVASRQSFLNTSK-WIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...++.|+++|++++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999876 555555443 2568999999999998777777888888999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 170 ~~l~~ 174 (211)
T PLN03118 170 EELAL 174 (211)
T ss_pred HHHHH
Confidence 99864
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3e-34 Score=187.14 Aligned_cols=159 Identities=42% Similarity=0.710 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887666777776666666667777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|++++++++.+..|+..+..... .+.|+++++||+|+. ......++...++...+++++++|+++|.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999999887753 689999999999986 4445667888899999999999999999999999999876
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 4
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=4e-34 Score=185.66 Aligned_cols=159 Identities=48% Similarity=0.822 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.....+.++.+.+........++....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877788888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|++++++++.+..|+..+........|+++++||+|+..+.....++...++...++.++++|++++.|++++|++|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998877678999999999999756667788899999988999999999999999999999864
No 85
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.8e-34 Score=187.57 Aligned_cols=162 Identities=38% Similarity=0.651 Sum_probs=143.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 44899999999999999999999888777767777777777777788888899999999999999888999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++++.+++.+..|+.++......++|+++++||+|+.+...+..+....+.+.....++++|+++|.|++++|++|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999988777666799999999999977777777777788877788999999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 166 ~~ 167 (169)
T cd04114 166 CR 167 (169)
T ss_pred HH
Confidence 54
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.7e-34 Score=188.55 Aligned_cols=159 Identities=41% Similarity=0.683 Sum_probs=139.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777776777777778888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHhh
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~ 164 (170)
|++++++++....|...+..... .++|+++++||+|+..+.....++...+++..+ ..++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887755542 379999999999997666667788888888887 7999999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
++.+
T Consensus 161 ~i~~ 164 (172)
T cd01862 161 TIAR 164 (172)
T ss_pred HHHH
Confidence 8865
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.8e-34 Score=195.74 Aligned_cols=158 Identities=34% Similarity=0.454 Sum_probs=134.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc-CCcEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV 87 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 87 (170)
+||+++|++|+|||||++++..+.+. ..+.++.+.+.....+.+.+....+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55556554466667777788889999999999882 23345566 9999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++++|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877643 679999999999998777788888889999999999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
+++
T Consensus 159 ~~~ 161 (221)
T cd04148 159 VRQ 161 (221)
T ss_pred HHH
Confidence 754
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.5e-34 Score=188.86 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=136.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+.+||+++|.+|+|||||+++++++.+. ..+.++.+..+....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999987 778888876666666777888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++++++.+..|+..+... .++|+++|+||+|+.+.......+...+++.+++ .++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999998888765322 4699999999999965554444556777788887 4699999999999999998
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|++.
T Consensus 161 l~~~ 164 (169)
T cd01892 161 LATA 164 (169)
T ss_pred HHHH
Confidence 8753
No 89
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-36 Score=182.77 Aligned_cols=157 Identities=39% Similarity=0.733 Sum_probs=145.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 13 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 91 (170)
+++|++++|||+|+-++..+.+. .+..++.++++..+.+..++..+++++|||+||++|++....|++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999988887774 34568888999888899999999999999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 92 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.|+.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++++.+++.++++|.++|+++|.|++..|-.|+++
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHH
Confidence 999999999999999999888889999999999999999999999999999999999999999999999999877653
No 90
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=3e-33 Score=182.05 Aligned_cols=159 Identities=39% Similarity=0.583 Sum_probs=141.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++|+|||||+++++++.+...+.++.. +.........+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5556666677778899999999999998999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
++++++++.+..|+..+..... ..+|+++++||+|+........+++..++...+++++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988877764 689999999999998767778888999999889999999999999999999999876
Q ss_pred C
Q 030880 170 V 170 (170)
Q Consensus 170 i 170 (170)
|
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.6e-33 Score=183.14 Aligned_cols=159 Identities=33% Similarity=0.554 Sum_probs=138.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++.+...+..+++.+++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888776666655 444555667888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|++++.++..+..|+..+..... .+.|+++|+||+|+.........+...+++..+++++++|+++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999988877643 57999999999999765556677788888888999999999999999999999865
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 160 ~ 160 (164)
T cd04139 160 E 160 (164)
T ss_pred H
Confidence 3
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.9e-33 Score=184.42 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=125.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.+||+++|++|+|||||++++..+.+.. +.|+.+.+... .. ...+.+.+||+||++++...+..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999998876643 45666554432 22 24578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++.++++...|+..+.... ..++|+++|+||+|+.+. +..+++..+.. ..++.++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999999988887775532 357899999999998543 45566666543 223478999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|+||++.
T Consensus 160 ~~~~~l~~~ 168 (168)
T cd04149 160 EGLTWLSSN 168 (168)
T ss_pred HHHHHHhcC
Confidence 999999763
No 93
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-34 Score=174.76 Aligned_cols=160 Identities=35% Similarity=0.667 Sum_probs=150.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.-+|.+++|+-|+|||+|+.++...++...-..+.+.++..+.+.+.+..+++++|||.|+++|+.....|++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 45799999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++.+.++..+..|+...++...++.-+++++||.|+..++.+..+++++++++.|..|.++|+++|+++.+.|-..+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999999999999988888888999999999999999999999999999999999999999999999886543
No 94
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=184.65 Aligned_cols=160 Identities=39% Similarity=0.641 Sum_probs=144.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE---------CCeEEEEEEEeCCCcccccccchhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------EDRTVRLQLWDTAGQERFRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~ 78 (170)
.-+|++.+|++|+||||++.++..+++......+.++++..+.+.. .+..+.+++|||+|+++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 3468899999999999999999999999888888888887776544 2346789999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
++.+-+++++||+++.+||-++..|+.+++.+. ..+..+++++||+|+.+.+.++.+++.+++.++|++||++||-+|.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 999999999999999999999999999998765 3667799999999999999999999999999999999999999999
Q ss_pred ChHHHhhcCC
Q 030880 158 NIKVCLMLHP 167 (170)
Q Consensus 158 ~i~~~~~~l~ 167 (170)
|+.+..+.|.
T Consensus 168 Nv~kave~Ll 177 (219)
T KOG0081|consen 168 NVEKAVELLL 177 (219)
T ss_pred CHHHHHHHHH
Confidence 9998776653
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1e-33 Score=188.37 Aligned_cols=160 Identities=37% Similarity=0.587 Sum_probs=150.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+|++++|.+|+|||+|..++..+.+...|.|+.+ +.+.+...+++..+.+.|+||+|++++..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 8888999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++...+++|+++|++.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955544 668999999999999889999999999999999999999999999999999987
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
..
T Consensus 161 ~r 162 (196)
T KOG0395|consen 161 VR 162 (196)
T ss_pred HH
Confidence 54
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=9.1e-34 Score=185.35 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=128.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
.|+++|++|+|||||++++.++.+...+.|+.+... ..++...+++.+||+||++++..++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999877777777766443 2334556899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH----HHHHHHHhhcCCeEEEEecCC------CCChH
Q 030880 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIK 160 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~ 160 (170)
.+++.++...+.|+..+.... .++|+++|+||+|+.....+.. .++..++++.++.++++|+++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999988886544 6899999999999866543321 234666677788999999999 99999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998875
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.2e-32 Score=181.88 Aligned_cols=158 Identities=32% Similarity=0.535 Sum_probs=133.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
.||+++|++|+|||||++++..+.+...+.++..... ...+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777765333 345567788889999999999999988888899999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
|++++++++.+. .|+..+.... .++|+++++||+|+.+. ..+...+++++++..+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999875 5777776543 57999999999998543 23446778888888875 899999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
|.|++++|++|++.
T Consensus 160 ~~~v~~lf~~l~~~ 173 (175)
T cd01870 160 KEGVREVFEMATRA 173 (175)
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998753
No 98
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2.7e-32 Score=179.49 Aligned_cols=157 Identities=35% Similarity=0.549 Sum_probs=133.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||+++|.++.+...+.++.. +.........+..+.+.+||+||++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666654 444555667788899999999999998888888899999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----------ccCHHHHHHHHhhcCC-eEEEEecCCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG 156 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (170)
|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. .+..+++.+++...+. .++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998864 5776666554 589999999999987554 2357788888888888 9999999999
Q ss_pred CChHHHhhcCCC
Q 030880 157 FNIKVCLMLHPN 168 (170)
Q Consensus 157 ~~i~~~~~~l~~ 168 (170)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 99
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.8e-32 Score=185.62 Aligned_cols=166 Identities=29% Similarity=0.575 Sum_probs=144.8
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|.+++....+|++++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+||++|++++...+..+++
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 67788889999999999999999999999988888888888888887777777888999999999999999989999999
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
+++++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+. ... .+...+++..++.++++|+++|.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999987664 57899999999998543 233 23346777788999999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+.|.+|++.
T Consensus 158 ~~f~~ia~~ 166 (215)
T PTZ00132 158 KPFLWLARR 166 (215)
T ss_pred HHHHHHHHH
Confidence 999988753
No 100
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.9e-32 Score=182.67 Aligned_cols=157 Identities=32% Similarity=0.550 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
.|++++|++|+|||||++++..+.+...+.++.. +.........+....+.+||++|++.+......+++++|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF-ENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc-ceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887766666554 333345556777788999999999988877777889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------ccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (170)
|++++++++.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..+++..++++.+. .|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5888887655 5699999999999854 234556788899999985 89999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|+++++
T Consensus 160 ~v~~~f~~l~~ 170 (187)
T cd04129 160 GVDDVFEAATR 170 (187)
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=3.2e-33 Score=181.93 Aligned_cols=152 Identities=23% Similarity=0.361 Sum_probs=118.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.+. .+.|+.+.... ... ...+.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877765 35666654432 222 24578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHH-HHHH----hhcCCeEEEEecCCCCChHHHh
Q 030880 90 DVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
|++++.+++....|+..+... .....|+++++||+|+.+.. ...+. ..+. ...++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998888776543 22568999999999985432 22232 2222 1234467899999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99875
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.7e-33 Score=184.94 Aligned_cols=156 Identities=22% Similarity=0.343 Sum_probs=122.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.+||+++|++|+|||||++++..+.+. .+.|+.+.+... ... ..+.+.+||+||++++..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999877764 356666655432 222 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||+++++++++...|+..+.... ..+.|++|++||+|+.+.. ..++..+.. ....+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999988888875532 3578999999999986432 223332222 1223467789999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|+||.+.
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 999998754
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1.1e-32 Score=181.08 Aligned_cols=152 Identities=23% Similarity=0.380 Sum_probs=123.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++|+|||||++++.++.+.. +.++.+..... . ....+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886543 56665544432 2 2345789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC------CeEEEEecCCCCChHHHh
Q 030880 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~ 163 (170)
.++++++++...|+..+.... ..+.|++|++||+|+.+ .+..+++.+++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999988886543 25689999999999854 355666766654322 378899999999999999
Q ss_pred hcCCCC
Q 030880 164 MLHPNT 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
+||+++
T Consensus 154 ~~l~~~ 159 (169)
T cd04158 154 DWLSRQ 159 (169)
T ss_pred HHHHHH
Confidence 999764
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.7e-32 Score=183.51 Aligned_cols=158 Identities=32% Similarity=0.487 Sum_probs=131.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++|+|||||+++++.+.+...+.++.. +.......+.+..+.+.+||+||+..+..++..+++++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 4444556667777899999999999998888899999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-ccccCHHHHHHHHh-hcCCeEEEEecCCCCChHHHhhcCC
Q 030880 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
++++.+++.+..|+..+..... .+.|+++++||+|+.. ...+..++..+... ..++.++++|+++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999865 34455555554443 4567899999999999999999987
Q ss_pred CC
Q 030880 168 NT 169 (170)
Q Consensus 168 ~~ 169 (170)
+.
T Consensus 160 ~~ 161 (198)
T cd04147 160 RQ 161 (198)
T ss_pred HH
Confidence 54
No 105
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=2.6e-32 Score=181.12 Aligned_cols=159 Identities=35% Similarity=0.494 Sum_probs=136.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
.||+++|++|+|||||++++..+.+...+.++..... .......+..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887766666654333 444556777788999999999999989999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+++.++++.+..|+..+.+... .+.|+++++||+|+.....+..++...+++..+.+++++|++++.|++++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877543 67899999999999766666777778888888899999999999999999999864
Q ss_pred C
Q 030880 169 T 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 161 ~ 161 (180)
T cd04137 161 E 161 (180)
T ss_pred H
Confidence 3
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.7e-32 Score=181.84 Aligned_cols=156 Identities=22% Similarity=0.341 Sum_probs=121.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|+++||||||++++..+.+. .+.|+.+.+.. .. ....+.+.+||+||++++..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987765 34666664442 22 234578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-----CCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 160 (170)
+|||+++++++++...++..+.... ..+.|++|++||+|+.... ..++......-. .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999999888877765432 2579999999999986543 333333322111 1246689999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|+||++.
T Consensus 168 e~~~~l~~~ 176 (181)
T PLN00223 168 EGLDWLSNN 176 (181)
T ss_pred HHHHHHHHH
Confidence 999999764
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=3.2e-32 Score=179.61 Aligned_cols=156 Identities=22% Similarity=0.344 Sum_probs=124.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....++|+++|++|+|||||++++.+... ..+.++.+... ..+... .+.+.+||+||++.+..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45678999999999999999999998754 34455554332 223333 47899999999999888999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCCh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 159 (170)
++|||++++.++.....|+..+... ...+.|+++++||+|+.+.. ..+++..+.. ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999988888877543 23679999999999986543 4455555543 34578999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|+++++
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999875
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=9.6e-33 Score=183.24 Aligned_cols=156 Identities=21% Similarity=0.344 Sum_probs=120.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.+||+++|++|+|||||++++..+.+.. +.|+.+..... . ....+.+.+||+||++++...+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998877654 45666544432 2 234578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++....++..+... ...++|++|++||.|+.+.. ...+..... ...++.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988877776443 22568999999999985432 223322221 1223467799999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 168 e~~~~l~~~ 176 (182)
T PTZ00133 168 EGLDWLSAN 176 (182)
T ss_pred HHHHHHHHH
Confidence 999998754
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=4.7e-32 Score=180.20 Aligned_cols=159 Identities=24% Similarity=0.337 Sum_probs=126.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
..+||+++|++|+|||||++++..+.+... .++.+.+........ ++..+.+.+|||||++++..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877644 566555554444433 346789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh------hcCCeEEEEecCCCCCh
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI 159 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i 159 (170)
+|||++++++++....|+.++.... ..+.|+++++||+|+.+. ...++...+.. ..++.++++||++|+|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999999988888876643 357999999999998532 33344444432 11356899999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 159 ~~l~~~l~~~ 168 (183)
T cd04152 159 QEGLEKLYEM 168 (183)
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=100.00 E-value=3.2e-31 Score=177.55 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=126.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-----CeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+||+++|++|+|||||++++.++.+...+.++.+.+...+..... +..+.+.+||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888766666655553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCccccCHH----HHHHHH
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS 141 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 141 (170)
+|+|||+++++||+.+..|+.++.... ..++|++||+||+|+.+++.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999997642 247899999999999766544433 355678
Q ss_pred hhcCCeEEEEecCCCCC
Q 030880 142 RELNVMFIETSAKAGFN 158 (170)
Q Consensus 142 ~~~~~~~~~~s~~~~~~ 158 (170)
++.+++.++.++.+...
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999987653
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.98 E-value=3.5e-32 Score=177.56 Aligned_cols=159 Identities=33% Similarity=0.525 Sum_probs=144.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
...+|++++|+..+|||+|+..+..+.++..|.|+.. +.+...+.++ +..+.+.+|||+|+++|+.++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999986 8888888895 9999999999999999999998899999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEE
Q 030880 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++||++.+++||+++ .+|+.++..++ +++|+++||+|.|+.+. ..+..+++...+++.|+ .|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999995 77999998887 89999999999999732 35778999999999995 89999
Q ss_pred ecCCCCChHHHhhcCC
Q 030880 152 SAKAGFNIKVCLMLHP 167 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~ 167 (170)
|++++.|++++|+..+
T Consensus 160 Sa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAI 175 (198)
T ss_pred hhhhhCCcHHHHHHHH
Confidence 9999999999998643
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=4.1e-31 Score=173.23 Aligned_cols=157 Identities=25% Similarity=0.367 Sum_probs=122.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|.+|+|||||++++..+.+...+.++. +.........+..+++.+||+||.+++...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 222333445567789999999999888877888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcC--CeEEEEecCCCCChHHHhh
Q 030880 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELN--VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~ 164 (170)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+.... ..++....+..++ ..++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 6777776654 57999999999999665432 1233334444443 3899999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.+.+.
T Consensus 158 ~~~~~ 162 (166)
T cd01893 158 YAQKA 162 (166)
T ss_pred HHHHH
Confidence 87654
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.98 E-value=1.2e-31 Score=174.96 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=119.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+|+++|++|+|||||++++.++.. ...+.|+.+..... . ....+.+.+||+||++++..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44555665543322 2 234578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChHH
Q 030880 90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~ 161 (170)
|++++.++.....|+..+.... ..++|+++++||+|+.+.. ...+...... ..++.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999999888888775542 2579999999999986532 2222222211 1234689999999999999
Q ss_pred HhhcCCCC
Q 030880 162 CLMLHPNT 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
+|++|.++
T Consensus 155 ~~~~l~~~ 162 (162)
T cd04157 155 GVQWLQAQ 162 (162)
T ss_pred HHHHHhcC
Confidence 99999764
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.98 E-value=1.3e-31 Score=175.70 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=120.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
+|+++|++|+|||||++++.++ +...+.|+.+... ..+.. ..+++.+||+||++++..++..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 5556667665432 23333 45789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccC----HHHHHHHHhhc--CCeEEEEecCCC------C
Q 030880 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSREL--NVMFIETSAKAG------F 157 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~s~~~~------~ 157 (170)
++++.+++++..|+..+.+... .++|+++++||+|+.+..... ...+..++.+. ++.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999998876543 579999999999986544211 11122333333 357888999998 8
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|+++.|+||.++
T Consensus 156 g~~~~~~wl~~~ 167 (167)
T cd04161 156 SIVEGLRWLLAA 167 (167)
T ss_pred CHHHHHHHHhcC
Confidence 999999999763
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.98 E-value=8e-31 Score=173.05 Aligned_cols=154 Identities=22% Similarity=0.376 Sum_probs=121.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..++|+++|++|+|||||++++..+.+.. +.++.+.+.. .... ....+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887764 3555554332 2222 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHH-HHHH----hhcCCeEEEEecCCCCChHH
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~i~~ 161 (170)
|+|.++++++.....++..+..... .+.|+++++||+|+... ...++. ..+. +..+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999999888887777755432 57999999999998542 233332 2222 23456899999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|++
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999976
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=1e-30 Score=170.34 Aligned_cols=152 Identities=22% Similarity=0.351 Sum_probs=118.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
+|+++|++|+|||||++++..+.+... .++.+.+.. .+.. +..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999877533 455543332 2222 345789999999999998889999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHH------HHhhcCCeEEEEecCCCCChHHHh
Q 030880 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
++++.++.....|+..+.+... .+.|+++++||+|+.... ...+... ++...++.++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999999888888765432 579999999999985422 2233322 222234579999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|++
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99875
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=2.1e-30 Score=173.37 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=125.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
....+|+++|++|+|||||++++.++.+. .+.++.+... ..+... ...+.+||+||++.+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987753 4455544332 233333 367899999999988888899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhh----------------cCCeEE
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI 149 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (170)
+|+|.++.++++....|+..+..... .+.|+++++||+|+.. .+..++.+..... ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999999888888888765433 6799999999999854 3455666666542 234789
Q ss_pred EEecCCCCChHHHhhcCCCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~i 170 (170)
+|||++|+|++++|+||++.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998764
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.3e-30 Score=169.80 Aligned_cols=153 Identities=23% Similarity=0.378 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
||+++|++|+|||||++++..... ...+.++.+.... .+..+ ...+.+||+||++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 2223344333332 23333 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-------cCCeEEEEecCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG 156 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 156 (170)
+++|+|+++++++.....|+..+.+.. ..++|+++++||+|+.+. ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999999999888888876543 367999999999998543 334445444432 2458999999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
.|++++++||+++
T Consensus 155 ~gv~e~~~~l~~~ 167 (167)
T cd04160 155 TGVREGIEWLVER 167 (167)
T ss_pred cCHHHHHHHHhcC
Confidence 9999999999763
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=5.8e-31 Score=171.19 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=115.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|++++|||||++++..+.+.. +.++.+.+.. .. ......+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877653 3455443332 22 2345789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHHHhh
Q 030880 91 VASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
++++.++.....++..+.+. ...+.|+++++||+|+.++. ...+..... ...+.+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998888776666655332 23579999999999986443 222222211 12235799999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|+++
T Consensus 154 ~l~~~ 158 (158)
T cd04151 154 WLVNT 158 (158)
T ss_pred HHhcC
Confidence 99864
No 120
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=2e-30 Score=170.97 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=127.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..+.+||+++|+.|+|||||++++..+... ...||.+..... +.. ..+.+.+||.+|+..++..|..|++++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee--CcEEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999976544 356666655433 333 346899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHh------hcCCeEEEEecCCCCC
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFN 158 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~ 158 (170)
|+|+|.++++.+.+....+..+..... .++|++|++||+|+.+. ...++...... ...+.++.||+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999999999988888766543 68999999999998543 34454544332 2345799999999999
Q ss_pred hHHHhhcCCCCC
Q 030880 159 IKVCLMLHPNTV 170 (170)
Q Consensus 159 i~~~~~~l~~~i 170 (170)
+.+.++||.++|
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=8.6e-30 Score=178.57 Aligned_cols=142 Identities=21% Similarity=0.371 Sum_probs=122.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-------------CeEEEEEEEeCCCcccc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERF 71 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 71 (170)
++...+||+++|+.|+|||||++++..+.+...+.++.+.++..+.+.++ +..+.+.|||++|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45677999999999999999999999998888888888877766655553 24688999999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCcc---c---cC
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VS 133 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~ 133 (170)
..++..++++++++|+|||++++++++.+..|+..+..... .++|++||+||+|+.... . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 358999999999996542 2 35
Q ss_pred HHHHHHHHhhcCC
Q 030880 134 IEEGEAKSRELNV 146 (170)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (170)
.+++++|+++.++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7899999999885
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=2.4e-30 Score=168.27 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=120.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
||+++|.+|+|||||++++.++.. ..+.++.+..... ... ....+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 3344554433322 222 24789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChHHHhh
Q 030880 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..++..+... ...++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999988888776643 3679999999999986543 2333333332 2346899999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
+|..+
T Consensus 154 ~l~~~ 158 (158)
T cd00878 154 WLLQQ 158 (158)
T ss_pred HHhhC
Confidence 98753
No 123
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=7.3e-30 Score=168.14 Aligned_cols=138 Identities=67% Similarity=1.021 Sum_probs=125.0
Q ss_pred CCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc
Q 030880 32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111 (170)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (170)
+.+.+.+.++.+.++..+.+..++..+.+.||||+|++++..++..+++++|++++|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788899888888888888999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 112 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
..++|+++|+||+|+.+...+..+++..++..+++.|+++||++|.|++++|++|++.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999997767788889999999999999999999999999999998753
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2e-29 Score=167.70 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=122.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++|+++|++|+|||||++++.++.+. .+.|+.+... ..... .++++.+||+||++.+...+..+++++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987654 2344443322 22222 3478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh------------cCCeEEEEec
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (170)
+|+|+++++++.....++..+.+.. ..+.|+++++||+|+.. .++.+++.....- ....+++||+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999999888888776532 25789999999999853 3455555544311 2346999999
Q ss_pred CCCCChHHHhhcCCCCC
Q 030880 154 KAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~~i 170 (170)
++|.|++++++||.+.+
T Consensus 168 ~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 168 VRRMGYGEGFKWLSQYI 184 (184)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999998753
No 125
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=1.5e-28 Score=153.29 Aligned_cols=158 Identities=19% Similarity=0.306 Sum_probs=127.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
...+++|+++|..++||||++++|.+... +...|+.++...... ...+.+++||.+|+...++.|++|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 34589999999999999999999998773 344566655444332 3558899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccC----HHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
|+|+|.+++..+++....+..+..... .+.|++|++||.|+..+-... ......+++...++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999998888888766443 678999999999997442211 122345556677899999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
+.++||+.
T Consensus 168 ~gidWL~~ 175 (185)
T KOG0073|consen 168 EGIDWLCD 175 (185)
T ss_pred HHHHHHHH
Confidence 99999864
No 126
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-31 Score=167.97 Aligned_cols=160 Identities=36% Similarity=0.583 Sum_probs=151.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.-+|++++|..++||||+|++++.+.+...+..+.+.++....+.+....+++.+||++|+++++.....|++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999999998888999999988888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||+-++..||+....|++.+.... ..+|.++|-||+|+.+..++...+++.+++.+.+.++-+|++...|+..+|.+|+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999998776 6799999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 178 e 178 (246)
T KOG4252|consen 178 E 178 (246)
T ss_pred H
Confidence 4
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=2.5e-28 Score=158.46 Aligned_cols=152 Identities=24% Similarity=0.373 Sum_probs=120.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
.|+++|++|+|||||++++.+..+...+.++.+..... ... ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37899999999999999999998887777776655443 222 23789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHHHhh
Q 030880 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
++++.++.....|+..+.... ..+.|+++++||+|+.+... ..+..... ...+++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999999988888777765432 25789999999999865432 22222111 12346889999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.96 E-value=4.6e-28 Score=160.53 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------eeeeEEEEEEE--EE---CCeEEEEEEEeCCCccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTM--YL---EDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 72 (170)
+|+++|.+++|||||+++|++.. +...+.+ ..+.+...... .. ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 1111111 11122222221 12 5667889999999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---eEE
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI 149 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (170)
..+..+++.+|++++|||++++.++.....|.... ..++|+++++||+|+.+.. ......++++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876665555553322 2468999999999985432 12233455566665 489
Q ss_pred EEecCCCCChHHHhhcCCCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~i 170 (170)
++|+++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999987653
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=1.5e-27 Score=157.26 Aligned_cols=154 Identities=22% Similarity=0.341 Sum_probs=116.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....++|+++|++|+|||||++++.+.... .+.++.+.... .+... +..+.+||+||+..+...+..+++++|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999987543 23444443322 22233 46789999999998888888999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--------CeEEEEecCCC
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG 156 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~ 156 (170)
++|+|+++..++.....++..+.... ..++|+++++||+|+.+.. ..++. .+..+ ..++++||++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence 99999999999988887777665432 3579999999999985432 12222 22222 24789999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
+|++++|+||+++
T Consensus 161 ~gi~~~~~~l~~~ 173 (173)
T cd04155 161 EGLQEGMNWVCKN 173 (173)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999864
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=6.6e-28 Score=158.51 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=111.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchhh---hcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 83 (170)
+|+++|.+|+|||||+++|.+........+..+.+.........+ ...+.+|||||..+ ...+...+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654211112222222111222222 24799999999632 22233333 34699
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCCh
Q 030880 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (170)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 159 (170)
++++|+|++++ ++++.+..|...+..... .++|+++|+||+|+.+.... ......+... .+..++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789888888888876542 46899999999998655443 3344455555 3678999999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.96 E-value=3.6e-27 Score=152.76 Aligned_cols=158 Identities=27% Similarity=0.407 Sum_probs=128.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|.+|+|||||++++..+.....+.++.+.+.........+..+.+.+||+||+..+...+..+.++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777777777776666777668899999999999998999889999999999
Q ss_pred EeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 89 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+.......++++|+++|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999877 6776654 66666666554478999999999996544 33333444444445689999999999999999987
Q ss_pred C
Q 030880 167 P 167 (170)
Q Consensus 167 ~ 167 (170)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=8.4e-28 Score=157.73 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=107.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cchhhhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIRD 81 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~ 81 (170)
+|+++|.+|+|||||++++.++.......+..+.+...... ......+.+|||||+..... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999887643222222222222222 22357899999999742110 00111123
Q ss_pred CcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 82 SSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
+|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.....+. +...+....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 6899999999987653 55667777776543 479999999999996544332 245555556789999999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|+++.+.
T Consensus 157 ~~l~~~l~~~ 166 (168)
T cd01897 157 DEVKNKACEL 166 (168)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96 E-value=1.1e-27 Score=161.81 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=113.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS 77 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 77 (170)
...++|+++|++|+|||||++++.+........+..+.+.........+. ..+.+|||||.... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 34579999999999999999999987643322222333333333333332 37999999997321 111 12
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
.+.++|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... ......+.+++++|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999999888887777777665554678999999999986543221 3445566789999999999
Q ss_pred ChHHHhhcCCCCC
Q 030880 158 NIKVCLMLHPNTV 170 (170)
Q Consensus 158 ~i~~~~~~l~~~i 170 (170)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999987653
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=3e-27 Score=169.02 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS 82 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 82 (170)
..|.++|.|++|||||++++..........+.++.......+... ....+.+||+||..+- ...+...++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 368999999999999999999765332222333334333333332 3347899999996431 11223346689
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
+++++|+|+++.++++....|..++..+.. .++|+++|+||+|+.+.......+...+....+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988889999999999877643 478999999999997655444444555566677899999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 318 eL~~~L~~~ 326 (335)
T PRK12299 318 ELLRALWEL 326 (335)
T ss_pred HHHHHHHHH
Confidence 999998653
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=5.5e-27 Score=153.15 Aligned_cols=152 Identities=18% Similarity=0.105 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+.|+++|.+++|||||+++|.+.. +.....+..+.+.......... ...+.+|||||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998642 2222233333333333333332 458999999999988776777788999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhh---cCCeEEEEecCCCCC
Q 030880 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFN 158 (170)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 158 (170)
+|+|+++ +++.+.+. .+... ...|+++++||+|+.+... ...++..+..+. .+.+++++|+++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 33333222 22111 1248999999999965421 122344444444 467999999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|+.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.95 E-value=9.7e-27 Score=158.85 Aligned_cols=160 Identities=40% Similarity=0.574 Sum_probs=130.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|+.|+|||||++++..+.+...+.++.+...........+..+++.+||++|+++++.++..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999998888887767766666666668899999999999999999999999999999
Q ss_pred EEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhc---CCeEEEE
Q 030880 88 VYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIET 151 (170)
Q Consensus 88 v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 151 (170)
+||.++. .+.+....|+.++........|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999995 455557888888887776679999999999997653 22223223322222 3348999
Q ss_pred ecC--CCCChHHHhhcCC
Q 030880 152 SAK--AGFNIKVCLMLHP 167 (170)
Q Consensus 152 s~~--~~~~i~~~~~~l~ 167 (170)
|++ ++.++.++|..+.
T Consensus 164 s~~~~~~~~v~~~~~~~~ 181 (219)
T COG1100 164 SAKSLTGPNVNELFKELL 181 (219)
T ss_pred ecccCCCcCHHHHHHHHH
Confidence 999 9999999988764
No 137
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-27 Score=152.46 Aligned_cols=158 Identities=22% Similarity=0.333 Sum_probs=131.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
...++++|+++|..++||||++.+|.-+..... .||.++....... .++.+++||.+|+++++..|..|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 356789999999999999999999998887755 7888766655544 26899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~ 158 (170)
+|+|+|.++++.+.+.+..+..+..... .+.|+++.+||.|+..+- +..++.+.. ......+..|+|.+|+|
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999999999998888877665 789999999999986543 333333222 23345789999999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
+.+.++||.+.
T Consensus 166 L~egl~wl~~~ 176 (181)
T KOG0070|consen 166 LYEGLDWLSNN 176 (181)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.95 E-value=2.3e-27 Score=151.63 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc-----cccccchhhhcCCcEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~ 85 (170)
||+++|++|+|||||++++.++... +.++.+.+. .-.+|||||+. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999977642 222222111 11689999973 233332 347899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 164 (170)
++|||++++.++.. ..|.... ..|+++++||+|+.+ .....+++.++++..+. +++++|+++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988755 2343321 249999999999864 33456677788877776 899999999999999999
Q ss_pred cCC
Q 030880 165 LHP 167 (170)
Q Consensus 165 ~l~ 167 (170)
+|+
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 885
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.95 E-value=5.4e-26 Score=146.14 Aligned_cols=154 Identities=45% Similarity=0.723 Sum_probs=123.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC
Q 030880 14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 14 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 92 (170)
++|++|+|||||++++.+... .....++. .+.........+....+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444544 5666666766777889999999999988888888899999999999999
Q ss_pred ChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccccCHHH-HHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 93 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++.++.....|+ .........++|+++++||+|+.......... ........+.+++++|+.++.|+.+++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999998888773 23333344789999999999987554433322 44555666789999999999999999999864
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=160.36 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=104.6
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC-----------cc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE 69 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~ 69 (170)
|...++...++|+++|.+|+|||||++++.++.+.....+..+.. ....... .+.+||||| ++
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 445566677899999999999999999999887654445544332 2222222 589999999 45
Q ss_pred cccccchhhhc----CCcEEEEEEeCCChhhHH----------hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880 70 RFRSLIPSYIR----DSSVAVVVYDVASRQSFL----------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 70 ~~~~~~~~~~~----~~~~~i~v~d~~~~~s~~----------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (170)
.+...+..++. .++++++|+|.+...... .....+..+. ..++|+++|+||+|+.+.. .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~ 148 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DE 148 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HH
Confidence 55555555554 457888888875432110 0011112221 2479999999999986443 33
Q ss_pred HHHHHHhhcCC---------eEEEEecCCCCChHHHhhcCCCC
Q 030880 136 EGEAKSRELNV---------MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 136 ~~~~~~~~~~~---------~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
...++++.++. .++++||++| |++++|++|.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 45556666654 4799999999 999999998754
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.94 E-value=1e-25 Score=146.35 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=108.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc------chhhhc--CCcEE
Q 030880 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA 85 (170)
Q Consensus 14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~ 85 (170)
++|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||+..+... +..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445555555555555554 57899999998876542 455554 99999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|+|+++++... .+...+.. .++|+++++||+|+.+...+.. ....+...++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765432 23333332 3689999999999976544433 345777778899999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 152 l~~ 154 (158)
T cd01879 152 IAE 154 (158)
T ss_pred HHH
Confidence 764
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=7.9e-26 Score=148.29 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=106.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
.|+++|.+|+|||||+++|..+.+.....+..+.+......... +....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765444333333333333332 24578999999999988888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-HHHHHHHHh------hcCCeEEEEecCCCCChHHH
Q 030880 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSR------ELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~s~~~~~~i~~~ 162 (170)
|+++....+ ....+..+.. .++|+++++||+|+....... ..+...+.. ..+++++++|+++|.|++++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743211 1111222222 468999999999986432111 111111111 12368999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
+++|.+
T Consensus 158 ~~~l~~ 163 (168)
T cd01887 158 LEAILL 163 (168)
T ss_pred HHHHHH
Confidence 999865
No 143
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-25 Score=137.15 Aligned_cols=160 Identities=24% Similarity=0.324 Sum_probs=134.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc--ccceeeeEEEEEEE-EECCeEEEEEEEeCCCcccc-cccchhhhcCCc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS 83 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 83 (170)
+..||+++|..++|||+++++++.+..... +.++.+ +.+...+ +.++-.-.+.++||.|-..+ ..+-..|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 457999999999999999999998766443 456666 4444443 44566668999999997766 567788999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++||+..+++||+.+...-..+.+... ..+|+++++||+|+.++.++..+.+..|++...+..+++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999987666666655543 67999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|.+++.
T Consensus 167 f~~l~~ 172 (198)
T KOG3883|consen 167 FTYLAS 172 (198)
T ss_pred HHHHHH
Confidence 988754
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=7.3e-26 Score=151.84 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 75 (170)
-+|+++|.+++|||||+++|+. +.+...+ .++.+.+.......+......+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1122333333434445566789999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-cCHHHHHHHHh-------hcCCe
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSR-------ELNVM 147 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 147 (170)
..+++++|++++|||+++.. +.....++..+.. .++|+++++||+|+..... ...+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2223333333322 4689999999999864332 12344444442 33678
Q ss_pred EEEEecCCCCChHHH
Q 030880 148 FIETSAKAGFNIKVC 162 (170)
Q Consensus 148 ~~~~s~~~~~~i~~~ 162 (170)
++.+|+++|.|++++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999877544
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=1.7e-25 Score=159.97 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=113.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----ccc---hhhhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLI---PSYIRDS 82 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~ 82 (170)
..|+++|.+++|||||++++..........+.++.......+...+ ...+.+||+||..+-. .+. ...++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998653222222233333333333332 3678999999964321 222 3335579
Q ss_pred cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 83 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
+++++|+|+++. ++++....|..++..+.. .+.|++||+||+|+.++.. ..+..+.+.+..+..++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 678888888888766542 4789999999999965532 2344556666678899999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|+++++++|.+.
T Consensus 316 GI~eL~~~I~~~ 327 (329)
T TIGR02729 316 GLDELLYALAEL 327 (329)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=3.2e-25 Score=159.81 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=111.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccccchhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 78 (170)
..++|+++|.+++|||||+|+|++........+..+.+.....+..++ +..+.+|||+|..+ +... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 348999999999999999999998765433334444555555565543 24799999999721 2221 224
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
+.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+... ..... .....++.+||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCC
Confidence 78999999999999998887777666666554445789999999999864322 11111 1234689999999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=2.5e-25 Score=138.11 Aligned_cols=114 Identities=32% Similarity=0.560 Sum_probs=87.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
||+|+|++|+|||||+++|.+.... ..+.+..+.+..............+.+||++|++.+...+...++++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12222333344444556677777799999999998888888889999999999
Q ss_pred EeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 030880 89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 125 (170)
||++++++++.+..+ +..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999997555 45554433 5699999999998
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=2.6e-25 Score=146.82 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=108.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccc---hhhhcCCcEEE
Q 030880 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLI---PSYIRDSSVAV 86 (170)
Q Consensus 14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i 86 (170)
++|++|+|||||+++|.+........+..+.+......... ....+.+||+||..+ ...+. ..+++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999876421112222223322223333 146789999999632 12222 34477899999
Q ss_pred EEEeCCCh------hhHHhHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880 87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (170)
+|+|+++. .+++....|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 578788778777765432 36999999999999755443333233445555678999999
Q ss_pred CCCCChHHHhhcCCCCC
Q 030880 154 KAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~~i 170 (170)
+++.|++++++++...+
T Consensus 160 ~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 160 KTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhcCHHHHHHHHHhhC
Confidence 99999999999987643
No 149
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.9e-25 Score=134.04 Aligned_cols=156 Identities=24% Similarity=0.376 Sum_probs=128.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.++++|+.+|..++||||++.+|.-+... ...|+.++.....+ ..++++.+||.+|+++.+.+|+.|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 46899999999999999999999977644 44677776655433 35689999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (170)
||.|..+.+..++.+..+..+..... .++|++|.+||.|+..+. .++++..+.+ ..+.-+..+++.+|.|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999999999888877766553 789999999999996553 4555555443 334578899999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+.|.||.+.
T Consensus 168 eglswlsnn 176 (180)
T KOG0071|consen 168 EGLSWLSNN 176 (180)
T ss_pred HHHHHHHhh
Confidence 999998764
No 150
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.6e-25 Score=142.98 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhh--cC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI--RD 81 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 81 (170)
++|+++|.|++|||||+|+|++.+......|..+.+.....+...+ ..+.++|+||...... ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999876544456565565555555555 6799999999433322 233343 58
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
.|+++.|.|+++.+.-.. ...++.. .+.|+++++||+|...+..... ....+.+.+|++++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987543222 2233332 4699999999999976655442 36777888999999999999999999
Q ss_pred HhhcC
Q 030880 162 CLMLH 166 (170)
Q Consensus 162 ~~~~l 166 (170)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98754
No 151
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=2.9e-26 Score=140.76 Aligned_cols=152 Identities=25% Similarity=0.384 Sum_probs=126.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.++.+.++|...+|||||++....+.+.....|+.++.... +....+.+.+||.||++.++++|..|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 35789999999999999999999888877777887765543 44677899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--------CeEEEEecCCCCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAGFN 158 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~ 158 (170)
|+|+++++.+...+..+..+..... .+.|++|++||.|+.++- .. ..+..+.| +..|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~---~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SK---IALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cH---HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999999888888887766543 789999999999986542 22 22233333 4679999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++-+.+||++
T Consensus 170 id~~~~Wli~ 179 (186)
T KOG0075|consen 170 IDITLDWLIE 179 (186)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=1.8e-24 Score=140.17 Aligned_cols=145 Identities=21% Similarity=0.192 Sum_probs=105.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhhhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR 80 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 80 (170)
++|+++|++|+|||||++++.+.... ....+..+.+......... ..++.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 1222333333333333333 457899999997655432 234577
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
++|++++|+|++++.+......+.. ....|+++++||+|+.+.... .....+.+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877766544432 356999999999998755433 334456789999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 147 ~l~~~l~~~ 155 (157)
T cd04164 147 ELKEALLEL 155 (157)
T ss_pred HHHHHHHHh
Confidence 999998654
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=9.2e-25 Score=146.27 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=100.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC----CC---CCcccceeeeEEEEEEEEE------------CCeEEEEEEEeCCCccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD----KF---DNTYQATIGIDFLSKTMYL------------EDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~D~~g~~~ 70 (170)
+||+++|++++|||||+++|+.. .+ .....+..+.+.......+ .+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11 1111122222222222222 23367899999999876
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHh------
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR------ 142 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------ 142 (170)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444456789999999998754333222221 1121 25799999999998643221 1222222111
Q ss_pred -hcCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880 143 -ELNVMFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 143 -~~~~~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
..+++++++|+++|.|+++++++|..+|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2357899999999999999999987764
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.7e-24 Score=151.84 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=102.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 81 (170)
+|+++|.+|+|||||+|+|++...... ..+.++..... .....+ ...+.+|||||...... ....++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999998765321 12222222222 222222 34699999999754321 12345789
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChH
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (170)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.... ......+....+. .++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 333333332 36899999999998643222 2334444444444 89999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
+++++|.+.
T Consensus 154 ~L~~~l~~~ 162 (270)
T TIGR00436 154 FLAAFIEVH 162 (270)
T ss_pred HHHHHHHHh
Confidence 999988653
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=1.8e-24 Score=159.96 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=110.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
..++|+++|++|+|||||+|+|++... .....+.++.+.....+..++ ..+.+|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998643 122334555666666666655 56789999998665432 2356
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++++|++++|||++++.+++.. |+..+.. .++|+++|+||+|+.+. +...+++..+.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999998877664 5555432 46899999999998543 12345666778899999998 69
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|+.|.+
T Consensus 348 I~~~~~~L~~ 357 (442)
T TIGR00450 348 IKALVDLLTQ 357 (442)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=2.6e-24 Score=143.52 Aligned_cols=154 Identities=23% Similarity=0.212 Sum_probs=108.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccc----------------eeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
+|+++|.+|+|||||+++|.+......... ..+....... .......+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVAT--FEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEE--EeeCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998765543211 1111211222 2223568999999999988888
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhh---------
Q 030880 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRE--------- 143 (170)
Q Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~--------- 143 (170)
+..+++.+|++++|+|.+++.+... ..++..+.. .+.|+++++||+|+..+... ...+..+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8889999999999999987654332 233333332 46999999999999753221 12333333333
Q ss_pred -----cCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880 144 -----LNVMFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
...+++++|+++|.|++++|++|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356899999999999999999987653
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=3.5e-24 Score=154.19 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=103.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------hh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI-------PS 77 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~~ 77 (170)
.+..+|+++|.+|+|||||+++|++..+... ..+.++.+.....+..++ ..+.+|||||..+. ..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 3456999999999999999999998776421 112222233333333333 46899999997532 2221 12
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecC
Q 030880 78 YIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAK 154 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 154 (170)
.++++|++++|+|..+ ++.... .|+..+.. .+.|.++|+||+|+.+. ...++.+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999764 344443 34444433 24677889999998543 2345556655544 589999999
Q ss_pred CCCChHHHhhcCCCC
Q 030880 155 AGFNIKVCLMLHPNT 169 (170)
Q Consensus 155 ~~~~i~~~~~~l~~~ 169 (170)
+|.|++++|++|.+.
T Consensus 200 tg~gv~eL~~~L~~~ 214 (339)
T PRK15494 200 SGKNIDGLLEYITSK 214 (339)
T ss_pred CccCHHHHHHHHHHh
Confidence 999999999998653
No 158
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.92 E-value=7.7e-24 Score=160.95 Aligned_cols=150 Identities=21% Similarity=0.222 Sum_probs=109.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
..+.+|+++|+.++|||||++++.+..+.....+..+.+.....+...+. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35578999999999999999999988776554444444444444444332 27899999999999999998999999999
Q ss_pred EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecC
Q 030880 87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAK 154 (170)
Q Consensus 87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~ 154 (170)
+|+|+++. ++.+. +......++|+++++||+|+.+. ..++........+ .+++++||+
T Consensus 164 LVVda~dgv~~qT~e~-------i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA-------ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEECCCCCCHhHHHH-------HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99998864 33322 22222356999999999998542 2333433333322 479999999
Q ss_pred CCCChHHHhhcCC
Q 030880 155 AGFNIKVCLMLHP 167 (170)
Q Consensus 155 ~~~~i~~~~~~l~ 167 (170)
+|.|++++|++|.
T Consensus 234 tGeGI~eLl~~I~ 246 (587)
T TIGR00487 234 TGDGIDELLDMIL 246 (587)
T ss_pred CCCChHHHHHhhh
Confidence 9999999999874
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=1.5e-24 Score=140.71 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=96.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----cchhhhcCCcEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i 86 (170)
+|+++|.+++|||||++++.+..... ..+.+ ...... .+||+||...... .....++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987643211 11111 111121 2699999632221 1123368999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--eEEEEecCCCCChHHHhh
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~ 164 (170)
+|+|+++..++.. .|+..+ ..++|+++++||+|+.+ ...+.+.+++++.+. +++++|+++|+|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998876532 333332 24678999999999854 235667777777775 899999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
++.+.
T Consensus 141 ~l~~~ 145 (158)
T PRK15467 141 YLASL 145 (158)
T ss_pred HHHHh
Confidence 98764
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=2.3e-24 Score=160.16 Aligned_cols=145 Identities=23% Similarity=0.235 Sum_probs=108.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
..++|+++|.+++|||||+|+|++... .....+..+.+.....+..++ ..+.+|||||.+++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 358999999999999999999998764 223344455566565565554 56899999998764432 2335
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+..++.+|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999887765444332 3568999999999996543221 34457899999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
+++++++|.+
T Consensus 358 I~~L~~~L~~ 367 (449)
T PRK05291 358 IDELREAIKE 367 (449)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=3.9e-24 Score=138.65 Aligned_cols=147 Identities=20% Similarity=0.151 Sum_probs=100.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhhcCCc
Q 030880 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (170)
Q Consensus 13 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 83 (170)
+++|.+|+|||||+++|.+.... ....+..+.+......... +..+.+|||||...+.. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999986421 1112222223333333333 36799999999877543 3345678999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 162 (170)
++++|+|..++.+.... .....+.. .+.|+++++||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876443332 12222222 35999999999998654322 233344566 7899999999999999
Q ss_pred hhcCCCCC
Q 030880 163 LMLHPNTV 170 (170)
Q Consensus 163 ~~~l~~~i 170 (170)
|++|++.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99988754
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=5.1e-24 Score=162.54 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-------CCccc------ceeeeEEEEEE--EEE---CCeEEEEEEEeCCCcccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~ 71 (170)
-|++++|+.++|||||+++|+.... ...+. ...+.+..... +.. ++..+.+++|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 4899999999999999999987421 11111 11122332222 222 456689999999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---eE
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MF 148 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (170)
...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.... ......++.+.+++ .+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceE
Confidence 9999999999999999999998766665555544332 368999999999985432 12223455555565 48
Q ss_pred EEEecCCCCChHHHhhcCCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+.+||++|.|++++|++|.+.
T Consensus 158 i~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHh
Confidence 999999999999999998653
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=2.3e-23 Score=140.37 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=111.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC-cEEEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY 89 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 89 (170)
+|+++|++|+|||+|+++|..+.+...+.++. ...........+....+.+||+||+.+++..+..+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999987765544332 222222222223456899999999999998888899998 9999999
Q ss_pred eCCCh-hhHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCccccC------HHHHHHHHh-----------------
Q 030880 90 DVASR-QSFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR----------------- 142 (170)
Q Consensus 90 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~----------------- 142 (170)
|+++. +++.....|+..+... ...++|+++++||+|+..+.... ..++..+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 6788877776665432 22589999999999986431110 111111110
Q ss_pred ---------------hcCCeEEEEecCCCC-ChHHHhhcCCC
Q 030880 143 ---------------ELNVMFIETSAKAGF-NIKVCLMLHPN 168 (170)
Q Consensus 143 ---------------~~~~~~~~~s~~~~~-~i~~~~~~l~~ 168 (170)
...+.+.++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 113468899998876 69999999865
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.2e-23 Score=157.72 Aligned_cols=151 Identities=18% Similarity=0.127 Sum_probs=104.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI 79 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 79 (170)
..+|+++|.+|+|||||+|+|+++... ....+..+.+.........+ ..+.+|||||.+. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987542 22334444444444444444 4688999999763 223345678
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
+++|++++|+|++++.++.. ..+...+.. .++|+++|+||+|+.... .+....+....+ ..+++||++|.|+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 89999999999998765432 233333332 469999999999985321 122233333333 3478999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 188 ~eL~~~i~~~ 197 (472)
T PRK03003 188 GDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 165
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-24 Score=137.53 Aligned_cols=160 Identities=29% Similarity=0.542 Sum_probs=140.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++++++|..|.||||++.+++.+.+...+.++.+.+.+......+...+++..|||.|++.+..+...|+-+..+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46789999999999999999999999999999999998888877655555799999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
++||++..-++.++.+|...+.+.+ .++|+++++||.|..... .......+-+..++.|++.|++++.|...-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 9999999999999999999998887 469999999999985433 2233445566778999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
++.
T Consensus 165 arK 167 (216)
T KOG0096|consen 165 ARK 167 (216)
T ss_pred hhh
Confidence 764
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=8.6e-24 Score=155.62 Aligned_cols=153 Identities=19% Similarity=0.170 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc--cccc------hhhhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~ 81 (170)
.+|+++|.+++|||||+|+|++........++.+.+.....+...+. ..+.+|||+|..+. ...+ ...+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987654333344445555545545442 26789999997332 1222 233678
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe-EEEEecCCCCChH
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~ 160 (170)
+|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+... .... ....+.+ ++.+|+++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998877776555544444345799999999999864321 1111 1123444 4889999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
+++++|.+
T Consensus 352 eL~e~I~~ 359 (426)
T PRK11058 352 LLFQALTE 359 (426)
T ss_pred HHHHHHHH
Confidence 99998864
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.3e-23 Score=152.59 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=109.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc----cccchhh---hcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 83 (170)
.|.++|.+++|||||++++++....-...|.++.......+... ....+.+||+||..+- ..+...+ +++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 79999999999999999999865321222333333322223222 1457999999996431 1222333 55799
Q ss_pred EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++++|+|+++. ++++....|..++..+.. .++|.+||+||+|+... .+....+.+.++.+++++||++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677778888888876643 47899999999998422 3445666667778899999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
+++++++|.+
T Consensus 315 I~eL~~~L~~ 324 (424)
T PRK12297 315 LDELLYAVAE 324 (424)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=1.2e-23 Score=141.95 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=100.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEEEEE-------------------------C--C----
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYL-------------------------E--D---- 55 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~--~---- 55 (170)
++|.++|+.|+|||||+..+...... .+.....+.......... . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999754211 111111111110000000 0 0
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--C
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S 133 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 133 (170)
....+.+|||||++.+...+...+.++|++++|+|++++.........+..+... ...|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267999999999988887788888999999999998742111112222222221 22478999999999653221 1
Q ss_pred HHHHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCCC
Q 030880 134 IEEGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.++++++.... +++++.+|+++|.|++++|++|.+.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 23344444432 5789999999999999999998764
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-23 Score=157.65 Aligned_cols=155 Identities=23% Similarity=0.231 Sum_probs=107.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI- 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~- 75 (170)
..++|+++|.+++|||||+++|++.... ....+.++.+.....+..++. .+.+|||||..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999987642 233445555555555555553 567999999532 22221
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHH-HHhhcCCeEEEEe
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA-KSRELNVMFIETS 152 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s 152 (170)
..+++++|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+.... ...+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999988777664 3333322 46899999999999643211 1122222 2222346899999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|+.+.+
T Consensus 364 Ak~g~gv~~lf~~i~~ 379 (472)
T PRK03003 364 AKTGRAVDKLVPALET 379 (472)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998754
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=5.1e-23 Score=134.44 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=103.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~ 79 (170)
...+|+++|++|+|||||++++.+............ ...............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 357899999999999999999998754322111111 11111111233356899999999654332 234457
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCC
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 158 (170)
..+|++++|+|++++.+. ....+...+.. .+.|+++++||+|+........+....+....+ .+++.+|++++.|
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 899999999999987211 12222233332 258999999999986433333334444444443 6899999999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998765
No 171
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=5.1e-23 Score=136.41 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=97.4
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRS 73 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~ 73 (170)
++.....+|+++|++|+|||||++++.+..+.....++.+.+........++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 4556788999999999999999999998764333233332222222222222 689999999532 223
Q ss_pred cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcC--C
Q 030880 74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V 146 (170)
Q Consensus 74 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 146 (170)
+...+++ .++++++|+|.+++-+..+. ..+..+.. .++|+++++||+|+.++.. ...++++......+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 3334554 45899999999876444333 22233322 3689999999999864422 22444555555554 4
Q ss_pred eEEEEecCCCCChH
Q 030880 147 MFIETSAKAGFNIK 160 (170)
Q Consensus 147 ~~~~~s~~~~~~i~ 160 (170)
.++++|+++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999974
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=3.9e-23 Score=138.78 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=102.4
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRS 73 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~ 73 (170)
.......+|+++|.+|+|||||+++++++.+.....++.+.+........ ...+.+|||||.. ++..
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 44556789999999999999999999987643333333332222211111 2579999999943 2333
Q ss_pred cchhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcCCeE
Q 030880 74 LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMF 148 (170)
Q Consensus 74 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 148 (170)
....+++. .+++++++|.+++.+.... ++...... .+.|+++++||+|+.+..+. ..+++.......+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 33444544 4678888998876443321 11111121 36889999999998654322 1233444444446789
Q ss_pred EEEecCCCCChHHHhhcCCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+++|++++.|++++++.|.+.
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999988653
No 173
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=130.09 Aligned_cols=160 Identities=23% Similarity=0.521 Sum_probs=140.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..-.+||.++|++..|||||+-++.++.+..++..+.+..+..+.+.+.+....+.+||.+|++++..+.+...+.+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34568999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-----cccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
+++||++.+.++..++.|+.+.+......+| |++++|.|..-. +.-...+++.+++..+++.+.||+....|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999998877655566 667999997421 2222456788899999999999999999999
Q ss_pred HHhhcC
Q 030880 161 VCLMLH 166 (170)
Q Consensus 161 ~~~~~l 166 (170)
++|..+
T Consensus 176 KIFK~v 181 (205)
T KOG1673|consen 176 KIFKIV 181 (205)
T ss_pred HHHHHH
Confidence 998754
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.3e-22 Score=133.37 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=101.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----------cch
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 76 (170)
+++|+++|.+|+|||||++++.+..... ...+..+...........+ ..+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999865321 1122222233333333333 4578999999654311 112
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH-HHHhhc----CCeEEEE
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSREL----NVMFIET 151 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~----~~~~~~~ 151 (170)
..+.++|++++|+|++++.+..... ++..+. ..+.|+++++||+|+.+......+... ...+.. +.+++.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3467899999999999886654432 222222 246899999999998755322222222 222333 3689999
Q ss_pred ecCCCCChHHHhhcCCC
Q 030880 152 SAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~ 168 (170)
|++++.|++++++++.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999998764
No 175
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.91 E-value=1.1e-22 Score=158.12 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=108.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.....|+++|..++|||||+++|..+.+.....+..+.+.....+...+ ..++||||||++.|..++...++.+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4567899999999999999999998776544444333333333344443 57999999999999999998999999999
Q ss_pred EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-------HHhhcC--CeEEEEecC
Q 030880 87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-------KSRELN--VMFIETSAK 154 (170)
Q Consensus 87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~ 154 (170)
+|||+++. ++.+. +......++|++|++||+|+.... .+.... ++..++ ++++++|++
T Consensus 366 LVVdAddGv~~qT~e~-------i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-------INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEECCCCCCHhHHHH-------HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 99999874 33322 222223569999999999985432 111111 122233 689999999
Q ss_pred CCCChHHHhhcCC
Q 030880 155 AGFNIKVCLMLHP 167 (170)
Q Consensus 155 ~~~~i~~~~~~l~ 167 (170)
+|.|++++|++|.
T Consensus 436 tG~GI~eLle~I~ 448 (787)
T PRK05306 436 TGEGIDELLEAIL 448 (787)
T ss_pred CCCCchHHHHhhh
Confidence 9999999999885
No 176
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.4e-23 Score=153.59 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----c---cchhhhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S---LIPSYIRDS 82 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~~ 82 (170)
..|+++|.|++|||||+++|.+....-...|.++.......+...+ ..+.+||+||..+.. . .....++++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999997654322223333333333333333 579999999953211 1 123346789
Q ss_pred cEEEEEEeCCCh----hhHHhHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880 83 SVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 83 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
+++++|+|+++. +.++....+..++..+. ....|++||+||+|+.+.... .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999853 34555555555554432 146899999999999654332 22233334455789
Q ss_pred EEEEecCCCCChHHHhhcCCC
Q 030880 148 FIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++.+|++++.|+++++++|.+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~e 337 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAE 337 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998864
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.9e-22 Score=150.18 Aligned_cols=155 Identities=20% Similarity=0.167 Sum_probs=104.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI---------- 75 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 75 (170)
...++++++|.+++|||||+++|++.... ....+.++.+.........+ ..+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34589999999999999999999986532 22233343444444444444 378999999976544322
Q ss_pred -hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH-hh----cCCeEE
Q 030880 76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFI 149 (170)
Q Consensus 76 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (170)
..+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+.. ...++..... .. .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 34578999999999999876655543 2233222 468999999999996211 1111221111 11 247899
Q ss_pred EEecCCCCChHHHhhcCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~ 168 (170)
++||++|.|++++|+++.+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~ 341 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDE 341 (429)
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 9999999999999998753
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.90 E-value=9.1e-23 Score=157.44 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=108.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeE--EEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
...+|+++|..++|||||+++|....+.....+..+.+ .+.......+....+.+|||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 55789999999999999999999876654333322222 2222233334568899999999999999999999999999
Q ss_pred EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH-------HhhcC--CeEEEEec
Q 030880 86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSA 153 (170)
Q Consensus 86 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~ 153 (170)
++|+|+++. ++++.+. . ....++|+++++||+|+.... .++..+. ....+ ++++++||
T Consensus 323 ILVVDA~dGv~~QT~E~I~----~---~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN----Y---IQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEECcCCCChhhHHHHH----H---HHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999874 3333222 1 223569999999999986532 2222222 12223 68999999
Q ss_pred CCCCChHHHhhcCCC
Q 030880 154 KAGFNIKVCLMLHPN 168 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~ 168 (170)
++|.|++++|++|..
T Consensus 393 ktG~GIdeLle~I~~ 407 (742)
T CHL00189 393 SQGTNIDKLLETILL 407 (742)
T ss_pred CCCCCHHHHHHhhhh
Confidence 999999999998854
No 179
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=8.9e-23 Score=148.75 Aligned_cols=157 Identities=17% Similarity=0.088 Sum_probs=110.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccchhhhcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 83 (170)
.|.++|.|++|||||+|+|.+.+......|.++.....-.+... ....+.++|+||..+-. ......++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 69999999999999999999865432223434333333333332 23468999999965321 11223478999
Q ss_pred EEEEEEeCC---ChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCC
Q 030880 84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (170)
Q Consensus 84 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 156 (170)
++++|+|++ +.+.++....|+.++..+.. .+.|+++|+||+|+.....+ .+....+.+..+ ..++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999988 45677777888888776542 46899999999998654332 234444555544 47899999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 319 ~GIdeLl~~I~~~ 331 (390)
T PRK12298 319 LGVKELCWDLMTF 331 (390)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999987653
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=8e-23 Score=155.91 Aligned_cols=149 Identities=20% Similarity=0.144 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+.|+++|..++|||||+++|.+.. ++.+..+..+.+.....+...+ ..+.+||+||++.|...+..++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999633 3333444555555444444444 78999999999999888888899999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc--CHHHHHHHHhhc----CCeEEEEecCCC
Q 030880 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAG 156 (170)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~ 156 (170)
+|+|+++ +++.+.+. .+. . .++| +++++||+|+.+...+ ..+++..+.+.. +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 34443332 222 1 3577 9999999999754432 234455555544 578999999999
Q ss_pred CChHHHhhcCC
Q 030880 157 FNIKVCLMLHP 167 (170)
Q Consensus 157 ~~i~~~~~~l~ 167 (170)
.|++++++.|.
T Consensus 152 ~GI~eL~~~L~ 162 (581)
T TIGR00475 152 QGIGELKKELK 162 (581)
T ss_pred CCchhHHHHHH
Confidence 99999998764
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.90 E-value=7.6e-23 Score=156.19 Aligned_cols=144 Identities=16% Similarity=0.180 Sum_probs=106.6
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc------chhhh--cCCcEEEE
Q 030880 16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV 87 (170)
Q Consensus 16 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~ 87 (170)
|++|+|||||+|++.+........+..+.+........++ .++.+|||||+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776444455555555555555544 46899999998877543 23333 37899999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|+|.++.+.. ..+..++. ..++|+++++||+|+.++..+. .+.+.+++.++++++++|+++|+|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875322 12222222 2469999999999986555444 456788888999999999999999999999886
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 152 ~ 152 (591)
T TIGR00437 152 K 152 (591)
T ss_pred H
Confidence 4
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.8e-22 Score=143.32 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=101.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCccccc--------ccchhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 78 (170)
+.-.|+++|++|+|||||+|+|++....... .+.++..... ... ......+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4457999999999999999999987653221 1222212111 111 1233689999999965432 223345
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG 156 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 156 (170)
+.++|++++|+|++++.+ ....+ +..+. ..+.|+++|+||+|+.............+.+..+ ..++++|++++
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 779999999999987322 22222 22222 2368999999999996432223344555555444 58999999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
.|+++++++|.+.
T Consensus 157 ~gv~~L~~~L~~~ 169 (292)
T PRK00089 157 DNVDELLDVIAKY 169 (292)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988653
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=2.5e-22 Score=153.45 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=108.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----cc------cceeeeEEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----TY------QATIGIDFLSK--TMYL---EDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~ 69 (170)
...|++++|+.++|||||+.+|+... ... .. ....+.+.... .+.+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34689999999999999999998631 110 00 01112222211 1111 4557899999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (170)
+|...+..+++.+|++++|+|+++....+....|.... ..++|+++++||+|+..... .....++...+++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 99999999999999999999999865544444443322 24689999999999854321 2223344444555
Q ss_pred eEEEEecCCCCChHHHhhcCCCC
Q 030880 147 MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.++.+||++|.|+++++++|.+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHh
Confidence 48999999999999999998653
No 184
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-23 Score=132.62 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=119.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
.....+.++++|+.++|||||+.++-.... +..-.++.+.......+ . ...+.+||.+|++..+++|..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHH
Confidence 344568999999999999999998764211 11122333333322222 2 568999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHH------HHhhcCCeEEE
Q 030880 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMFIE 150 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (170)
||..+|++|+++|+++++.|++....+..+..... .++|+++.+||.|+.+... ..++.. ...+..+++.+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCcccc
Confidence 99999999999999999999998887777766554 7899999999999865432 222222 22344578999
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+|+.+|+||++..+|+.+
T Consensus 167 vSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVK 184 (197)
T ss_pred chhhhcccHHHHHHHHHH
Confidence 999999999999998753
No 185
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=123.72 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=122.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
....++|++++|..++|||||+..|...... ...|+.++....... ...+++++||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence 3467899999999999999999999876533 345665555444332 345799999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~ 158 (170)
+|+|+|.+++..|+++...+-++..... ..+|+++.+||.|+..+..+. +....+ +..-..+-+||+.+++|
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e--eia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE--EIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH--HHHHhcchhhhhhceEEeeeCccccccC
Confidence 9999999999999998888888766554 789999999999986543322 111111 11224788999999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
+....+|+.+.
T Consensus 167 ~~dg~~wv~sn 177 (185)
T KOG0074|consen 167 STDGSDWVQSN 177 (185)
T ss_pred ccCcchhhhcC
Confidence 99988888654
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=3.1e-22 Score=129.67 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------chhhhcCCcEE
Q 030880 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA 85 (170)
Q Consensus 14 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~~~ 85 (170)
++|++|+|||||++++.+.... ....+..+........... ....+.+||+||....... ...+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986544 2222222223322222222 1468999999997765433 33467899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH---HHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++|.++..+..... +..... ..+.|+++++||+|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999886665554 222222 257999999999998755433221 123333445679999999999999999
Q ss_pred hhcCCCC
Q 030880 163 LMLHPNT 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.7e-22 Score=148.27 Aligned_cols=146 Identities=20% Similarity=0.148 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhhhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 80 (170)
.+|+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||+.. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999987642 12233333444444454544 6899999999876 2223455678
Q ss_pred CCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880 81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (170)
++|++++|+|++++.+.. .+..|+.. .+.|+++|+||+|..+. .....++ ..+++ .++++|+++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753332 23344332 26899999999996431 1222222 35566 48999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|+++.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999998864
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.89 E-value=1.4e-21 Score=152.62 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=110.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------chh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS 77 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 77 (170)
+.++|+++|.+++|||||+|++++........+.. +...+.........++.+||+||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGv--Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGV--TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCc--eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 45799999999999999999999865533223333 333333344555678999999998766432 122
Q ss_pred hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
++ ..+|++++|+|.++.+.-. .+..++.+ .++|+++++||+|+.+.+.+. ...+++.+.+|++++++|+++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 32 4799999999998865422 23333332 469999999999986555443 456788889999999999999
Q ss_pred CCChHHHhhcCC
Q 030880 156 GFNIKVCLMLHP 167 (170)
Q Consensus 156 ~~~i~~~~~~l~ 167 (170)
|+|++++++.+.
T Consensus 153 g~GIdeL~~~I~ 164 (772)
T PRK09554 153 GRGIEALKLAID 164 (772)
T ss_pred CCCHHHHHHHHH
Confidence 999999988764
No 189
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=6.4e-23 Score=136.89 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=104.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
...+|+++|+.++|||||+++|+....... .....+................++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 347899999999999999999996432110 00111111112222112556789999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHH-HHHhhc---
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL--- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~~~~~--- 144 (170)
.|.......++.+|++|+|+|+.+.-.. .....+..+.. .++|+++++||+|+...... ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9988888889999999999999866332 22333333333 45889999999999732111 112222 333333
Q ss_pred ---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 145 ---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 145 ---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.++++.+|+++|.|++++++.|.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHH
Confidence 258999999999999999998764
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=9.9e-22 Score=145.88 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=104.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------cccceeeeEEEEEEEEE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYL 53 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (170)
.+.+.++|+++|+.++|||||+++|+.. .... +.....+.+... ...
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKF 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEE
Confidence 3556799999999999999999999862 1110 011222333333 333
Q ss_pred CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc-
Q 030880 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ- 131 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 131 (170)
......+.+||+||+++|.......++.+|++++|+|++++++..... .+...+.... ...|+++++||+|+.+...
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHH
Confidence 445578999999999988766666788999999999999875432211 1111122222 2357899999999964221
Q ss_pred ---cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880 132 ---VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 132 ---~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 163 (170)
....++..+++..+ ++++++|+++|.|+.+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12345666666655 579999999999998643
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=1.4e-21 Score=145.13 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=102.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYL 53 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 53 (170)
+..+.++|+++|++++|||||+++|++.... .+..+..+.+.... ..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~ 79 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KF 79 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EE
Confidence 4556799999999999999999999853211 01122233333322 33
Q ss_pred CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--
Q 030880 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-- 131 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 131 (170)
....+.+.+|||||+++|.......++.+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+...
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH
Confidence 3456789999999998887666666789999999999987322222222222222222 1246899999999864221
Q ss_pred --cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880 132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 132 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 163 (170)
...+++..+.+..+ ++++++|+++|.|+++.+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12345555555554 579999999999998744
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.3e-21 Score=144.35 Aligned_cols=145 Identities=22% Similarity=0.209 Sum_probs=101.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchhhhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYIRD 81 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 81 (170)
+|+++|.+|+|||||+|+|.+.... ....+..+.+.........+ ..+.+|||||.. .+......++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 12233333344444444444 469999999963 233445667889
Q ss_pred CcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880 82 SSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (170)
+|++++|+|+.++.+... +..|+. . .++|+++|+||+|..+.... ... ...++. .++.+||.+|.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence 999999999987533322 233332 2 35899999999998644321 112 345666 799999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++++++.+
T Consensus 148 v~~ll~~i~~ 157 (429)
T TIGR03594 148 IGDLLDAILE 157 (429)
T ss_pred hHHHHHHHHH
Confidence 9999998754
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=5.4e-21 Score=131.23 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=100.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccchhhhcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 83 (170)
+++++|++|+|||||+++|.+........+..+.+.....+... +..+++||+||..+.. .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999875432222333333433333333 3679999999975432 12345688999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHH--------------------------------------------HHHh--------
Q 030880 84 VAVVVYDVASRQ-SFLNTSKWIDE--------------------------------------------VRTE-------- 110 (170)
Q Consensus 84 ~~i~v~d~~~~~-s~~~~~~~~~~--------------------------------------------~~~~-------- 110 (170)
++++|+|+++++ ..+.+...+.. ...+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 33333333221 1000
Q ss_pred -----------c--CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 111 -----------R--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 111 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
. ...+|+++|+||+|+.+ .+++..++.. ..++++|+++|.|++++|+.|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHH
Confidence 1 13478999999999853 3445555543 458999999999999999987643
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=120.37 Aligned_cols=156 Identities=25% Similarity=0.314 Sum_probs=115.8
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc--------ccc----eeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------YQA----TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
.....+.||++.|+.++||||+++++........ +.. +...++.. ... .....+.+++||||+++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~-~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IEL-DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEE-cCcceEEEecCCCcHHH
Confidence 3456788999999999999999999998764211 111 11111111 111 23357999999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc--CCeEE
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFI 149 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (170)
.-+|..+.+++.++|+++|.+.+..+ .....++.+.... .+|++|++||.|+.+.+ +.+..++..... ..+.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999888 4444444444433 29999999999997654 455565555544 78999
Q ss_pred EEecCCCCChHHHhhcCC
Q 030880 150 ETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~ 167 (170)
+.++.+++|..+.++.+.
T Consensus 157 ~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 157 EIDATEGEGARDQLDVLL 174 (187)
T ss_pred eeecccchhHHHHHHHHH
Confidence 999999999998877654
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1e-20 Score=141.06 Aligned_cols=154 Identities=20% Similarity=0.164 Sum_probs=102.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 75 (170)
..++|+++|.+++|||||++++++... .....+..+.+......... +..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999997653 22333444444443334333 356789999996432221 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHH-HHHhhcCCeEEEEe
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGE-AKSRELNVMFIETS 152 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~~~~~~~~~~s 152 (170)
..+++.+|++++|+|++++.+..... ++..+.. .++|+++++||+|+.+..... ..+.. .+.....++++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 24578999999999999876655432 2222222 468999999999986432110 11111 11112246999999
Q ss_pred cCCCCChHHHhhcCC
Q 030880 153 AKAGFNIKVCLMLHP 167 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~ 167 (170)
|++|.|++++|+.+.
T Consensus 326 A~~~~gv~~l~~~i~ 340 (435)
T PRK00093 326 ALTGQGVDKLLEAID 340 (435)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999998764
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=1.1e-20 Score=143.63 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=99.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc----eeeeEEEEEEEE------------ECCeEEEEEEEeCCCccccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~~ 72 (170)
..-|+++|.+++|||||+++|.+..+...... +.+......... +......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998765432211 111111111100 00011238899999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc------------CHHH-
Q 030880 73 SLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE- 136 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~- 136 (170)
.++..+++.+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+.+.... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 455443322 11 136899999999998642110 0000
Q ss_pred -----------HHHHHh------------hc--CCeEEEEecCCCCChHHHhhcCC
Q 030880 137 -----------GEAKSR------------EL--NVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 137 -----------~~~~~~------------~~--~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
..++.+ .. .++++++||++|+|+++++++|.
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 001111 11 35899999999999999998764
No 197
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=6.2e-21 Score=131.06 Aligned_cols=156 Identities=16% Similarity=0.209 Sum_probs=103.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSY 78 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~ 78 (170)
.+.--|+++|.|++|||||+|++++.+..-......++......+. ..+...+.++||||..+-.. .....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4456799999999999999999999876433222222122222222 23366899999999554322 23444
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG 156 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 156 (170)
++.+|++++|.|++++..- -..+ ++.+.. .+.|+++++||+|.................... ..++++||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 7799999999999874322 2222 233322 358999999999987665422233333333333 38999999999
Q ss_pred CChHHHhhcCCC
Q 030880 157 FNIKVCLMLHPN 168 (170)
Q Consensus 157 ~~i~~~~~~l~~ 168 (170)
.|++.+.+.+.+
T Consensus 158 ~n~~~L~~~i~~ 169 (298)
T COG1159 158 DNVDTLLEIIKE 169 (298)
T ss_pred CCHHHHHHHHHH
Confidence 999999887754
No 198
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.3e-22 Score=123.30 Aligned_cols=158 Identities=21% Similarity=0.295 Sum_probs=119.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
..+.+++++|..|+||||++.++.-+....+ .|+.++.... +..++.++++||.+|+-..+..|+.|+.+.+.+|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 3789999999999999999999887765533 5555544332 3457789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCccc---cCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQ---VSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
+|+|.+|..........+..+.. ..-.+..+++++||.|.....- +......+..+..-+.++++||.+|+|++..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999999877776555544433 3335677888999999854321 1112222223333478999999999999999
Q ss_pred hhcCCCC
Q 030880 163 LMLHPNT 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
.+||.+.
T Consensus 171 ~DWL~~~ 177 (182)
T KOG0072|consen 171 MDWLQRP 177 (182)
T ss_pred HHHHHHH
Confidence 9998754
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=2.3e-20 Score=145.91 Aligned_cols=152 Identities=19% Similarity=0.132 Sum_probs=100.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 78 (170)
...+|+++|.+++|||||+|+|++.... ....+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999986532 12233343343333333333 5788999999763 22233456
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++.+|++++|+|+++.-+..+ ..|...+.. .++|+++|+||+|+.... ......+....+ ..+++||++|.|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G 423 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG 423 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence 789999999999976422111 133333332 469999999999985431 122222222333 357899999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
++++|++|.+.
T Consensus 424 I~eLl~~i~~~ 434 (712)
T PRK09518 424 VGDLLDEALDS 434 (712)
T ss_pred chHHHHHHHHh
Confidence 99999988654
No 200
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.86 E-value=2e-21 Score=143.00 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=126.4
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|+...-.+.+||+++|+.|+||||||-.|....+++.-.+-...-... .......+..++.|++..++-+......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHh
Confidence 666777889999999999999999999999988876644332211112 223344566899999866554445566789
Q ss_pred CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHH-HHHHHHhhcCC--eEEEEecC
Q 030880 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIE-EGEAKSRELNV--MFIETSAK 154 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~--~~~~~s~~ 154 (170)
++|++.++|+++++++++.+ ..|+..+++..+ .++|+|+|+||.|.......+.+ ....++.++.- ..++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999996 679999988774 68999999999998655443222 24455554442 56999999
Q ss_pred CCCChHHHhhcCCCC
Q 030880 155 AGFNIKVCLMLHPNT 169 (170)
Q Consensus 155 ~~~~i~~~~~~l~~~ 169 (170)
+..++.++|....+.
T Consensus 159 ~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 159 TLANVSELFYYAQKA 173 (625)
T ss_pred hhhhhHhhhhhhhhe
Confidence 999999999876554
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=5.4e-21 Score=140.91 Aligned_cols=160 Identities=21% Similarity=0.145 Sum_probs=104.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEE--E----------------EEEEECC------eEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFL--S----------------KTMYLED------RTVR 59 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~--~----------------~~~~~~~------~~~~ 59 (170)
.+.++|+++|..++|||||+++|.+..... +.....+.... . ....+++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997532211 11111111110 0 0000011 1467
Q ss_pred EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHH
Q 030880 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG 137 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 137 (170)
+++||+||+++|...+......+|++++|+|++++.........+..+... ...|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999999888888888999999999998643112223333333221 12468999999999653221 12344
Q ss_pred HHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 138 EAKSREL---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
..+.... +++++++|+++|.|+++++++|.+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 4444433 578999999999999999998865
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=7.3e-21 Score=128.80 Aligned_cols=147 Identities=22% Similarity=0.263 Sum_probs=93.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc-------------------------------ccceeeeEEEEEEEEECCeEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLEDRTVR 59 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
||+++|.+++|||||+++|+.....-. ..+..+.+.... .+...+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR--YFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee--EEecCCce
Confidence 689999999999999999986322100 001122222222 22234457
Q ss_pred EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc----CHH
Q 030880 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE 135 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~ 135 (170)
+.+|||||++++.......++.+|++++|+|++++..-. .......+ ... ...++++++||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~-~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYIL-SLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHH-HHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 899999999887766667789999999999998653211 11111212 222 12457778999998643211 123
Q ss_pred HHHHHHhhcCC---eEEEEecCCCCChHHH
Q 030880 136 EGEAKSRELNV---MFIETSAKAGFNIKVC 162 (170)
Q Consensus 136 ~~~~~~~~~~~---~~~~~s~~~~~~i~~~ 162 (170)
+...+.+.++. +++.+||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 45555566663 5899999999999753
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=147.40 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=104.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 75 (170)
...+|+++|.+++|||||++++++.... ....+.++.+.....+...+. .+.+|||||..+ |..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 222344445555555555554 467999999542 1111 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-HHhh----cCCeEEE
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-KSRE----LNVMFIE 150 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~ 150 (170)
..+++.+|++++|+|++++.+.....- +..+.. .++|+++|+||+|+.+... .+.... +... ...+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999998877766543 333322 4689999999999965322 111221 1111 1247799
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+||++|.|++++|+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998754
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=1e-20 Score=144.40 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=108.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 75 (170)
-||+++|+.++|||||+++|+.. .+.... ....+.+.......+...++++++|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999863 221111 1112233333333344456899999999999999889
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCCe
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM 147 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (170)
..+++.+|++++|+|+++. .......|+..+.. .++|+++++||+|+...+.. ..++...+.. +..++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999999864 23334555555543 45899999999998654321 1233333332 33568
Q ss_pred EEEEecCCCC----------ChHHHhhcCCCC
Q 030880 148 FIETSAKAGF----------NIKVCLMLHPNT 169 (170)
Q Consensus 148 ~~~~s~~~~~----------~i~~~~~~l~~~ 169 (170)
++.+|+++|. |+..+|+.+.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 9999999995 799998887653
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=1.8e-20 Score=117.33 Aligned_cols=136 Identities=21% Similarity=0.270 Sum_probs=97.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----cccccchhhhcCCcEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~i 86 (170)
||+++|+.|+|||||+++|.+... .+..+....+ .=.++||||.- .+.........+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988654 2222322221 11358999932 23333344456899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (170)
++.|++++.+. +-..+...+ ..|+|=|+||+|+.. .....+.++++.+..|+ .+|.+|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~-----~pP~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSV-----FPPGFASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCcc-----CCchhhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 99999987432 112222222 489999999999962 23456788889999998 7899999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 141 L~~ 143 (143)
T PF10662_consen 141 LEE 143 (143)
T ss_pred HhC
Confidence 853
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=1.7e-20 Score=138.29 Aligned_cols=162 Identities=20% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEE--EEE----------------EEC------CeE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS--KTM----------------YLE------DRT 57 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~------~~~ 57 (170)
...+.++|+++|+.++|||||+.+|.+.... .+.....+..... ... ..+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3456799999999999999999999653111 1111111111110 000 000 013
Q ss_pred EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHH
Q 030880 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIE 135 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 135 (170)
..+.+|||||+++|..........+|++++|+|++++.........+..+.. . ...|+++++||+|+.++... ..+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~-~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-I-GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-c-CCCcEEEEEEeeccccchhHHHHHH
Confidence 5799999999988876655556778999999999964211111112222221 1 12468999999999654322 123
Q ss_pred HHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 136 EGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 136 ~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++..+.+.. +++++++|+++|.|+++++++|.+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 444444432 578999999999999999998865
No 207
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=7.3e-24 Score=135.21 Aligned_cols=159 Identities=36% Similarity=0.547 Sum_probs=135.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
-++++++|..|+|||+++.+.....+...|..+.+.+..-+....+. ..+++++||..||+++..+...|++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 47999999999999999999999988888888888887766665544 45689999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCC-eEEEEecCCCCChHH
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIKV 161 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 161 (170)
|||+++.-+|+....|...+.... +..+|+++.+||||....... ......++++++|. .++++|++.+.+++|
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999999885543 356788999999998643322 25778899999997 899999999999998
Q ss_pred HhhcCC
Q 030880 162 CLMLHP 167 (170)
Q Consensus 162 ~~~~l~ 167 (170)
.-..|.
T Consensus 185 a~r~lV 190 (229)
T KOG4423|consen 185 AQRELV 190 (229)
T ss_pred HHHHHH
Confidence 766554
No 208
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.85 E-value=2.9e-20 Score=121.65 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=96.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccchhhhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR 80 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 80 (170)
.|+++|++|+|||||++.+.++.......++.+.+........++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 478999999999999999996544433333333333333332232 899999999433 2333334443
Q ss_pred ---CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHh--hcCCeEEEE
Q 030880 81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSR--ELNVMFIET 151 (170)
Q Consensus 81 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 151 (170)
+.+.+++++|..+..+. ..+..|+.. .+.|+++++||+|+....... ........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 46788999998765322 223334332 248999999999985432211 122222232 334589999
Q ss_pred ecCCCCChHHHhhcCCCCC
Q 030880 152 SAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~~i 170 (170)
|++++.|+++++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999987653
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=8e-20 Score=139.43 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=109.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
-.||+++|+.++|||||+++|+. +.+.... ....+.+.......+....+++.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999997 3322211 123344455555555566789999999999999999
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCC
Q 030880 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNV 146 (170)
Q Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~ 146 (170)
+..+++.+|++++|+|+++.... ....++..+.. .++|.++++||+|....... ..+++..+.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999865322 22233333322 46888999999998644321 1233333332 2346
Q ss_pred eEEEEecCCCC----------ChHHHhhcCCC
Q 030880 147 MFIETSAKAGF----------NIKVCLMLHPN 168 (170)
Q Consensus 147 ~~~~~s~~~~~----------~i~~~~~~l~~ 168 (170)
+++.+|+++|. |+..+++.+..
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~ 192 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVD 192 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHH
Confidence 79999999998 57888777654
No 210
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.6e-21 Score=119.32 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=120.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+.-|++++|..++|||||++.|...+... +.||...+. ....+ .+.+++.+|.+|+.+.+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTS--E~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCCh--HHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 45689999999999999999998876532 234433222 12222 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHH------Hhh--------c---CCeEE
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRE--------L---NVMFI 149 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~--------~---~~~~~ 149 (170)
.+|+.+.+.|.+.+..++.+..... ..+|+++.+||+|.+.+. +.++.+.. .-. . .+..+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 9999999999999999988877764 789999999999987654 32332211 111 0 13679
Q ss_pred EEecCCCCChHHHhhcCCCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~i 170 (170)
.||...+.|..+.|.|+.+.|
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 999999999999999998764
No 211
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=7.9e-20 Score=122.17 Aligned_cols=145 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
.++|+++|..++|||||+++|++... ..+..+.. +..............+.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999986411 00011222 2222223334455688999999998887
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcC---
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN--- 145 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 145 (170)
......+..+|++++|+|+...-.- .....+..+.. .++| +++++||+|+...... ...++..+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7777778999999999998764221 12222233322 3466 7788999998633221 1234555555443
Q ss_pred --CeEEEEecCCCCCh
Q 030880 146 --VMFIETSAKAGFNI 159 (170)
Q Consensus 146 --~~~~~~s~~~~~~i 159 (170)
++++.+|+++|.++
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 68999999999985
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.1e-19 Score=138.63 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=98.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc----ceeeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ----ATIGIDFLSKTMY--LEDRT-----V-----RLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~ 70 (170)
..+..|+++|++++|||||+++|.+........ ++.+......... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 344579999999999999999998765432221 1222111111100 00111 1 278999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc----C--------HH
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----S--------IE 135 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~ 135 (170)
|..++...++.+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888999999999999987 555544432 11 146899999999998532110 0 00
Q ss_pred -----------HHHHHHhh---------------cCCeEEEEecCCCCChHHHhhcC
Q 030880 136 -----------EGEAKSRE---------------LNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 136 -----------~~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+....... ..++++++|+++|+|++++++.+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i 213 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL 213 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence 01111111 12579999999999999988765
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=8.3e-20 Score=140.01 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=101.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
-|.++|..++|||||+++|.+.. +..+.....+.+......... .+..+.+||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47889999999999999998632 222332333333322222222 23458999999999998777788899999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC--HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS--IEEGEAKSRELN---VMFIETSAKAGFNIKV 161 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 161 (170)
|+|+++.-. ......+..+ .. .++| ++||+||+|+.++.... .+++..+....+ .+++++|+++|.|+++
T Consensus 81 VVda~eg~~-~qT~ehl~il-~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAIL-QL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999986311 1112222222 22 2355 57899999996543221 244555555444 6899999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+++.|.+
T Consensus 157 L~~~L~~ 163 (614)
T PRK10512 157 LREHLLQ 163 (614)
T ss_pred HHHHHHH
Confidence 9998754
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=7.4e-20 Score=124.79 Aligned_cols=147 Identities=21% Similarity=0.222 Sum_probs=92.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEECCeEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR 59 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
+|+++|+.++|||||+.+|+..... .+.....+.+.....+ .....+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~--~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF--ETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE--eeCCeE
Confidence 5899999999999999999742110 0001112222222223 334578
Q ss_pred EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--cc
Q 030880 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQ 131 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~ 131 (170)
+.+|||||+..+...+...++.+|++++|+|+++... +. .....+... ... ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence 9999999998887767777889999999999987421 11 122222222 221 23688999999998632 11
Q ss_pred c----CHHHHHHHHhhc-----CCeEEEEecCCCCChHH
Q 030880 132 V----SIEEGEAKSREL-----NVMFIETSAKAGFNIKV 161 (170)
Q Consensus 132 ~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 161 (170)
. ..+++....... +++++.+||++|.|+++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 1 122333333443 36799999999999874
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=131.14 Aligned_cols=149 Identities=23% Similarity=0.235 Sum_probs=109.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 78 (170)
..++++++|.|++|||||+|.|++... .-+..|.++.+.....+.++| +.+.+.||+|.++..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 358999999999999999999998654 234467777788888887777 778999999977654432 334
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
+++||.+++++|.+.+.+-....- .. ....+.|+++|.||.|+..+...... ....+.+++.+|+++|+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~--~~---~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL--IE---LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH--HH---hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 779999999999998622211111 11 22367999999999999765442211 223345789999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++.+.+.|.+
T Consensus 364 l~~L~~~i~~ 373 (454)
T COG0486 364 LDALREAIKQ 373 (454)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=1.3e-19 Score=123.16 Aligned_cols=113 Identities=26% Similarity=0.311 Sum_probs=78.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------cceeeeEEEE--EEEEE---CCeEEEEEEEeCCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQ 68 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 68 (170)
+|+++|+.|+|||||+++|+........ ....+.+... ..... .+..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 0011111111 11111 345688999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987765432 333333322 358999999999975
No 217
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.8e-19 Score=129.27 Aligned_cols=149 Identities=20% Similarity=0.153 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccchhhh
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI 79 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 79 (170)
..|+++|.|++|||||+|+|++.+.. .+..|..+.+.......+.+. .+.++||+|.+.-. ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987653 222455555655555555553 49999999966322 1234457
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (170)
..||+++||+|....-+ .....+..+.. ..++|+++|+||+|-... ++.....-.+|. .++.+||.+|.|
T Consensus 82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGIT--PADEEIAKILR--RSKKPVILVVNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCC--HHHHHHHHHHH--hcCCCEEEEEEcccCchh-----hhhHHHHHhcCCCCceEeehhhccC
Confidence 79999999999875422 22222222222 246999999999997421 222222335565 789999999999
Q ss_pred hHHHhhcCCCC
Q 030880 159 IKVCLMLHPNT 169 (170)
Q Consensus 159 i~~~~~~l~~~ 169 (170)
++++.+.+.+.
T Consensus 153 i~dLld~v~~~ 163 (444)
T COG1160 153 IGDLLDAVLEL 163 (444)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=1.1e-18 Score=119.02 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=96.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------------eeeeEEEEEE-------------EEEC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKT-------------MYLE 54 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 54 (170)
||+++|+.++|||||++++..+.+.+.... ..+++..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997654321110 0111110000 0112
Q ss_pred CeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
.....+.++|+||++.|.......+. .+|++++|+|+..+.. .....++..+.. .++|+++++||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 23457999999999988765555554 7899999999876532 122233333322 35889999999998654322
Q ss_pred C--HHHHHHHHhh--------------------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880 133 S--IEEGEAKSRE--------------------------LNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 133 ~--~~~~~~~~~~--------------------------~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
. ..+...+.+. ..++++.+|+.+|.|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 2223333221 123899999999999999988764
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=7.8e-19 Score=129.07 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|+.++|||||+++|++.... .+.....+.+. ...........+.++||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 345789999999999999999999863110 01112222222 233344445678999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC---HHHHHHHHhhcC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (170)
+|.......+..+|++++|+|++....- .....+..+.. .++| +++++||+|+.+..+.. .++...+.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 8877677777899999999998864211 12222222222 3577 67889999986432221 234555555554
Q ss_pred -----CeEEEEecCCCC--------ChHHHhhcCC
Q 030880 146 -----VMFIETSAKAGF--------NIKVCLMLHP 167 (170)
Q Consensus 146 -----~~~~~~s~~~~~--------~i~~~~~~l~ 167 (170)
++++.+|+++|. ++.++++.|.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~ 197 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD 197 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence 589999999983 5777777654
No 220
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=9.9e-19 Score=120.28 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=102.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc------cc------cc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FR------SL 74 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~~------~~ 74 (170)
.+.++|+++|.|++|||||.|.+++.+.........+ +.....-.+......+.|+||||--. +. ..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4568999999999999999999999988765544443 22233333455566899999999221 11 11
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-------------cCH--HHHHH
Q 030880 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-------------VSI--EEGEA 139 (170)
Q Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~--~~~~~ 139 (170)
....+.+||++++++|+++....-. .+.+..+..+. .+|-++++||.|...+.. ++. .+..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 2334678999999999996432211 12233333333 588899999999764321 110 11111
Q ss_pred HHh----------hcCC----eEEEEecCCCCChHHHhhcCCCC
Q 030880 140 KSR----------ELNV----MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 140 ~~~----------~~~~----~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
... ..|. .+|.+|+++|+|++++.++|..+
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 111 1112 48999999999999999988643
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=9.2e-19 Score=128.78 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++... ..+.....+.+ ............+.++||||++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHH
Confidence 35678999999999999999999986210 00111222222 2223333445578999999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCcccc---CHHHHHHHHhhcC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (170)
+|.......+..+|++++|+|+.....- .....+..+. ..++|.+ +++||+|+.+..+. ...++..+.+.++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 8877667778899999999999864221 1223333222 2357755 57899999643221 1234555555543
Q ss_pred -----CeEEEEecCCCC----------ChHHHhhcCC
Q 030880 146 -----VMFIETSAKAGF----------NIKVCLMLHP 167 (170)
Q Consensus 146 -----~~~~~~s~~~~~----------~i~~~~~~l~ 167 (170)
++++.+|+++|. ++.++++.|.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~ 199 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD 199 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHH
Confidence 689999999984 5666666553
No 222
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=1.7e-18 Score=119.03 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=86.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--------Cc-----c---cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD--------NT-----Y---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
+|+++|..|+|||||+++|+..... .. + ....+.+.......+.....++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999863211 00 0 011112222223333445578999999999999888
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (170)
Q Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (170)
+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+..... .+...+....++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~--~~~~~~i~~~~~~ 146 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADL--EKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCH--HHHHHHHHHHHCC
Confidence 89999999999999999876432 23344444433 3689999999999865431 2333344444543
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.6e-18 Score=130.60 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhhh--
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI-- 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~-- 79 (170)
+..+++++|+|++|||||.|+|++....-..-|..+.+...... ...+.++.++|.||..... ...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~--~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKL--KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEE--EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 45679999999999999999999976654444554444444444 3444569999999944332 2334443
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
.+.|++|-|.|++|-+.--.+.-.+. .-+.|++++.|++|..+++.+. -+.+++.+.+|+++++++|++|+|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLl------E~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLL------ELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHH------HcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCH
Confidence 36799999999997754333332222 2468999999999987665543 4577888999999999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++...+.+
T Consensus 153 ~~l~~~i~~ 161 (653)
T COG0370 153 EELKRAIIE 161 (653)
T ss_pred HHHHHHHHH
Confidence 999987753
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=1.4e-18 Score=127.94 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=96.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++... ..+..+..+.+. ...........+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 45679999999999999999999974210 001112222332 333344456689999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCccccC---HHHHHHHHhhcC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (170)
+|..........+|++++|+|+...... ...+.+..+.. .++|.+ +++||+|+.+..... .++++.+.+..+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8876666667789999999999864211 11222233322 246655 679999987543221 235666666665
Q ss_pred -----CeEEEEecCCCC
Q 030880 146 -----VMFIETSAKAGF 157 (170)
Q Consensus 146 -----~~~~~~s~~~~~ 157 (170)
++++++|+++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.8e-18 Score=126.00 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=112.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.=|+++|+...|||||+..+........-.-..+.......+..+. ..-.+.|+|||||+.|..+..+-.+-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 344589999999999999999998776554333344344444444432 3457999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecCCCC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 157 (170)
+|+++++.-- .+....+......++|++|++||+|..+. +++....-..+.| ..++++||++|+
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999997521 12233444444568999999999998633 3344444444443 479999999999
Q ss_pred ChHHHhhcCC
Q 030880 158 NIKVCLMLHP 167 (170)
Q Consensus 158 ~i~~~~~~l~ 167 (170)
|++++++.+.
T Consensus 157 Gi~eLL~~il 166 (509)
T COG0532 157 GIDELLELIL 166 (509)
T ss_pred CHHHHHHHHH
Confidence 9999998763
No 226
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=4.2e-18 Score=117.71 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=111.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cchhhhcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 83 (170)
.+-++|.|++|||||++.+...+..-...++++.....-.+..++ ...+++-|.||.-+=.. .....++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 467899999999999999998665333334444444444443333 23499999999433222 2233467899
Q ss_pred EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880 84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (170)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (170)
.+++|+|++.+ +.++.++....++..+.. .+.|.++|+||+|+.+.. .....++++.+.- .++++||++++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999988 778887777777766654 678999999999985322 2224666666654 49999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|+.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999887654
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=4.8e-18 Score=122.95 Aligned_cols=155 Identities=25% Similarity=0.220 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccc-cc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRS-LI 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~-~~ 75 (170)
..++|+++|.|++|||||+|++++.... ....+.++.+.....+..++ .++.++||+|..+ |.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999986542 23345555566665555555 5688999999443 221 12
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHh----hc-CCeEEE
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR----EL-NVMFIE 150 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~-~~~~~~ 150 (170)
...+..+|.+++|.|++.+-+-++ ..+..+.. ..+.+++|+.||+|+.++.....++.+.... .. .++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 344678999999999987644322 22222222 2468999999999997764444444333222 22 358999
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+||++|.|++++|+.+.+
T Consensus 331 iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 331 ISALTGQGLDKLFEAIKE 348 (444)
T ss_pred EEecCCCChHHHHHHHHH
Confidence 999999999999987643
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.79 E-value=3.5e-18 Score=116.11 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=77.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CeEEEEEEEeCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA 66 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 66 (170)
+|+++|..++|||||+.+|+..... . +.....+........... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864211 0 000111111111112222 347889999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
|+++|......+++.+|++++|+|+....+.+.. ..+.... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999877544332 2222222 2458999999999975
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=111.71 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=101.9
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS 73 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 73 (170)
-++.....|+++|.+++|||||||+|++++.......+.+.+.....+.+.+ .+.++|.|| ++....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 3445667899999999999999999999774333344455555555555555 388999999 223334
Q ss_pred cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH----hhcCC
Q 030880 74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNV 146 (170)
Q Consensus 74 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~ 146 (170)
+...|++ +-.++++++|...+-. ..+...-++... .++|++|++||+|.....+.. ......+ .....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE--LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCc
Confidence 4555554 4567788888775532 222222222222 469999999999997654433 1122222 22233
Q ss_pred e--EEEEecCCCCChHHHhhcCCC
Q 030880 147 M--FIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 147 ~--~~~~s~~~~~~i~~~~~~l~~ 168 (170)
. ++..|+.++.|++++...|.+
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~ 194 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILE 194 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHH
Confidence 3 888999999999998877643
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1.3e-17 Score=116.50 Aligned_cols=116 Identities=23% Similarity=0.264 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------------ccc---eeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NT----------------YQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
-+|+++|++|+|||||+++|+..... .. +.+ ..+.+.......+...++++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999853110 00 000 01122223333445566899999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
+|.......++.+|++++|+|+++.... ....++.... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 8887777789999999999999865321 1223333222 246899999999998554
No 231
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.78 E-value=4.9e-18 Score=115.43 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=94.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCccccccc-----chhhhcCCcE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL-----IPSYIRDSSV 84 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~ 84 (170)
||+++|++++||||..+.+.++..+..... .+.+.......+ ......+.+||+||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~-L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLR-LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccc-cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999998765544321 221222222222 244568999999998866443 4666899999
Q ss_pred EEEEEeCCChhhH---HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc------CHHHHHHHHhhcC---CeEEEEe
Q 030880 85 AVVVYDVASRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELN---VMFIETS 152 (170)
Q Consensus 85 ~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~s 152 (170)
+|+|+|+...+-. ..+...+..+.+.. ++..+-++.+|+|+..+... ..+++...+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999854433 33344444444443 78999999999998643211 1233444445555 7889888
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
..+ ..+-+.|..+.+
T Consensus 159 I~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp TTS-THHHHHHHHHHH
T ss_pred CcC-cHHHHHHHHHHH
Confidence 886 577666665543
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=3.3e-18 Score=127.15 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=101.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------Cc--ccceeeeEEEEEEEEECCe
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------NT--YQATIGIDFLSKTMYLEDR 56 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~-------------------------~~--~~~~~~~~~~~~~~~~~~~ 56 (170)
..+.++++++|+.++|||||+.+|+.... . +. .....+.+...........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45669999999999999999999985211 0 00 0001112222222334455
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHH-------hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 128 (170)
...++++|+||+++|.......+..+|++|+|+|+++. .|+ ...+.+..+. ..++| +++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCCc
Confidence 67899999999999999889999999999999999863 222 2222222221 23564 688899999752
Q ss_pred cc------ccCHHHHHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880 129 KR------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKV 161 (170)
Q Consensus 129 ~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 161 (170)
.. ....+++..+.++.| ++++++|+++|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 112456677777666 5799999999999853
No 233
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=4.2e-18 Score=119.58 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=95.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccc----c-e-----------eeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----A-T-----------IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 74 (170)
+|+++|.+|+|||||+++++......... . + .+..............+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999998532110000 0 0 011111111222234568999999999888777
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe--EEEEe
Q 030880 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM--FIETS 152 (170)
Q Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~s 152 (170)
+..+++.+|++++|+|+++.........| ..+. ..++|.++++||+|..... .......+...++.. .+.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 88889999999999999876544332222 2222 2468999999999986542 122333444445543 34555
Q ss_pred cCCCCChHHHhhcCC
Q 030880 153 AKAGFNIKVCLMLHP 167 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~ 167 (170)
..++.++..+.+.+.
T Consensus 155 ~~~~~~~~~~vd~~~ 169 (268)
T cd04170 155 IGEGDDFKGVVDLLT 169 (268)
T ss_pred ccCCCceeEEEEccc
Confidence 677777766665553
No 234
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.78 E-value=9.4e-18 Score=117.76 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=91.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----- 73 (170)
.++|+++|.+|+|||||+|+|++...... ..++.........+..++..+++.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998866433 233444455555555667778999999999443211
Q ss_pred ---------------------cchhhhc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 74 ---------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 74 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.....+. .+|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 1112222 46777777776642 11111 22223332 25899999999998653
Q ss_pred cc--cCHHHHHHHHhhcCCeEEEEecC
Q 030880 130 RQ--VSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~~s~~ 154 (170)
.+ .......+.+...++.++.....
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22 33556777778888888876654
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.78 E-value=4.4e-18 Score=127.43 Aligned_cols=153 Identities=21% Similarity=0.229 Sum_probs=95.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc---------------------------------cceeeeEEEEEEE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY---------------------------------QATIGIDFLSKTM 51 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 51 (170)
.....++|+++|..++|||||+++|+.....-.. ....+.+... .
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~--~ 100 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY--R 100 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE--E
Confidence 3466799999999999999999999864221000 0011122222 2
Q ss_pred EECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
........+.++||||++.|.......++.+|++++|+|+...-.-. ....+..+ .... ..|+++++||+|+.+...
T Consensus 101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~-~~lg-~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIA-TLLG-IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHH-HHhC-CCceEEEEEeeccccchh
Confidence 22334567899999999888766666679999999999987542111 11111111 1111 247888999999864332
Q ss_pred cCH----HHHHHHHhhc----CCeEEEEecCCCCChHHH
Q 030880 132 VSI----EEGEAKSREL----NVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 132 ~~~----~~~~~~~~~~----~~~~~~~s~~~~~~i~~~ 162 (170)
... ++...+.+.. .++++++|+++|.|+++.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 2222333333 368999999999998764
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=1.2e-17 Score=123.49 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|.+++|||||+++|++.... .+..+..+.+. ...........+.++||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence 456699999999999999999999974211 11112222222 222333445678899999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (170)
.|.......+..+|++++|+|+...-. ......+..+.. .++| +++++||+|+.+..+. ..+++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777889999999999885422 122222332222 3577 6788999999753321 1234555555543
Q ss_pred -----CeEEEEecCCCCC
Q 030880 146 -----VMFIETSAKAGFN 158 (170)
Q Consensus 146 -----~~~~~~s~~~~~~ 158 (170)
++++.+|+.+|.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 6899999999874
No 237
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=115.88 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=105.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--ccccc-------chhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSL-------IPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~-------~~~~ 78 (170)
.-..+++.|.|++|||||++.+...+..-...|+++...+.-.+ ..+..+++++||||.= -...+ ..+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 34679999999999999999999887655555555544444333 2344589999999921 11111 1111
Q ss_pred hcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880 79 IRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKA 155 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (170)
-.-.++++|++|.+.. .+.+....++.++..... .|+++|.||+|..+..... ++.......+ .....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence 2246789999999854 578888889999988874 8999999999987555443 3333333333 4577888888
Q ss_pred CCChHHHhhcC
Q 030880 156 GFNIKVCLMLH 166 (170)
Q Consensus 156 ~~~i~~~~~~l 166 (170)
+.+++..-+.+
T Consensus 321 ~~~~d~~~~~v 331 (346)
T COG1084 321 GCGLDKLREEV 331 (346)
T ss_pred hhhHHHHHHHH
Confidence 88888665443
No 238
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.76 E-value=1.2e-17 Score=112.15 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=89.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeee---EEEEEEEEECCeEEEEEEEeCCCcccccccchhh-----hc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 80 (170)
++||+++|.+|+|||||+|.+++...........+. +........ .....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543322222221 100111111 112368999999975433322233 56
Q ss_pred CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----------cCHHHHHHHHh----hc
Q 030880 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKSR----EL 144 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~ 144 (170)
++|+++++.+. ++... ..++..+... +.|+++|+||+|+..+.. ...++..+.+. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887442 23333 3344444443 578999999999843211 01111222221 22
Q ss_pred C---CeEEEEecC--CCCChHHHhhcCCC
Q 030880 145 N---VMFIETSAK--AGFNIKVCLMLHPN 168 (170)
Q Consensus 145 ~---~~~~~~s~~--~~~~i~~~~~~l~~ 168 (170)
+ -++|.+|+. .+.|+..+.+.+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~ 181 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence 2 278999998 57888888887654
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.76 E-value=1.3e-17 Score=124.03 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=98.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CcccceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (170)
..+.++|+++|+.++|||||+.+|+.... . .+.....+.+. ......
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~--~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEe--eeEEEc
Confidence 45669999999999999999999986211 0 00111122222 223344
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 127 (170)
.....+.++|+||+.+|.......+..+|++++|+|++... .+ ....+.+..+. ..++| +|+++||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~---~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF---TLGVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH---HcCCCeEEEEEEccccc
Confidence 55678999999999999888888899999999999998642 11 12222222222 23566 67899999953
Q ss_pred C--ccc----cCHHHHHHHHhhc-----CCeEEEEecCCCCChHH
Q 030880 128 E--KRQ----VSIEEGEAKSREL-----NVMFIETSAKAGFNIKV 161 (170)
Q Consensus 128 ~--~~~----~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 161 (170)
. ..+ ...+++..+.... +++++.+|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 111 1123344444433 36799999999999864
No 240
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=6e-18 Score=110.49 Aligned_cols=118 Identities=18% Similarity=0.360 Sum_probs=74.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh---hhcCCcEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSVA 85 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~ 85 (170)
.-.|+++|+.|+|||+|..+|.++...+...+... .. .... .......+.++|+|||++.+..... +..++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~-~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI-AYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE-ECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc-eEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 35689999999999999999999966554433311 11 1111 1233447899999999998765444 47899999
Q ss_pred EEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCc
Q 030880 86 VVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 86 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~ 129 (170)
|+|+|.+. +..+.++.+++..+.... ...+|++|++||.|+..+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999874 445666555555543332 368999999999999754
No 241
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=117.73 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=111.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc--cc------chhhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--SL------IPSYI 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~------~~~~~ 79 (170)
.-..|.++|-+++|||||+|.|++........-+.+.+...+.+...+ +..+.+-||.|.-+.- .+ .....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 446899999999999999999997655444444555566666666665 4578999999943211 11 12224
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
..+|.++.|+|+++|...+.+..-...+........|+|+|.||+|+..... .........+ ..+.+||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence 5899999999999997777777777777666556799999999999764432 1111111112 5789999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+.+.+.|.+
T Consensus 345 ~~L~~~i~~ 353 (411)
T COG2262 345 DLLRERIIE 353 (411)
T ss_pred HHHHHHHHH
Confidence 999887654
No 242
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.2e-17 Score=120.50 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=114.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCcccceeeeEEEEEEE-EECCeEEEEEEEeCCCccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~ 70 (170)
.+--|+.++..-..|||||..+|+.... .-+.....+.......+ ..++..+.++++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3456899999999999999999985211 11112222322222222 2246779999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEE
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFI 149 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~ 149 (170)
|.....+.+.-|+++++++|++..-.-+....++..+. .+..+|.|+||+|+..++.- -..+..+.....+.+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999997654444555544443 46788999999999765321 12333344444456899
Q ss_pred EEecCCCCChHHHhhcCCCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~i 170 (170)
.+||++|.|+.++++.+++.|
T Consensus 214 ~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEeccCccHHHHHHHHHhhC
Confidence 999999999999999998764
No 243
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=6.7e-17 Score=117.21 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=117.0
Q ss_pred CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCcccceeeeEEEEEEEEE---CCeEEEEEEE
Q 030880 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMYL---EDRTVRLQLW 63 (170)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 63 (170)
..++...--|++++..-..|||||..+++.... .-+.....+.......+.+ ++..+.++++
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 344445556899999999999999999986211 1112223333333333322 5688999999
Q ss_pred eCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh
Q 030880 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 64 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
|||||-.|.-...+.+..|.+.++++|+++.-.-+.+...+..+. .+.-++-|+||+|++.+.. ..-..+...-
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~ 155 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI 155 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence 999999999888999999999999999997754455555555553 4677889999999965531 2223334444
Q ss_pred cCC---eEEEEecCCCCChHHHhhcCCCCC
Q 030880 144 LNV---MFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
.|+ ..+.+||++|.||+++++.|.+.|
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 565 679999999999999999987654
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=2.9e-17 Score=121.25 Aligned_cols=147 Identities=23% Similarity=0.234 Sum_probs=92.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------------------------ccceeeeEEEEEEEEECCe
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNT---------------------------------YQATIGIDFLSKTMYLEDR 56 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 56 (170)
+||+++|+.++|||||+++|+.....-. .....+.+... ......
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence 5899999999999999999975321100 00111122222 222234
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--- 133 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 133 (170)
..++.++||||+++|.......+..+|++++|+|+.....-+ ..+.+..+. .. ...++++++||+|+.+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~-~~-~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIAS-LL-GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHH-Hc-CCCcEEEEEEecccccchHHHHHH
Confidence 458899999999988776667789999999999987552211 111122222 21 124588899999986432211
Q ss_pred -HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880 134 -IEEGEAKSRELN---VMFIETSAKAGFNIKV 161 (170)
Q Consensus 134 -~~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 161 (170)
.++...+.+..+ ++++++|+++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333334443 4799999999999875
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=8.3e-17 Score=118.45 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|++.... .+..+..+.+. ....+......+.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHH
Confidence 356789999999999999999999873110 01122222232 233333445678999999998
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCcccc---CHHHHHHHHhhc-
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSREL- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~- 144 (170)
+|.......+..+|++++|+|+..... ......+..+.. .++|.+ +++||+|+.+.... ...+...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887767777889999999999986422 122233333322 357865 57899998643221 122344444443
Q ss_pred ----CCeEEEEecCCCC----------ChHHHhhcCC
Q 030880 145 ----NVMFIETSAKAGF----------NIKVCLMLHP 167 (170)
Q Consensus 145 ----~~~~~~~s~~~~~----------~i~~~~~~l~ 167 (170)
+++++.+|++++. |+.++++.|.
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~ 199 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVD 199 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHH
Confidence 3689999999875 4566666554
No 246
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=8.2e-17 Score=120.32 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=96.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC------CC--------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------DN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
..+.++++++|..++|||||+++|++... .. ......+.+..............+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 34568999999999999999999996211 00 00111222222222223334558899999999998
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhc---
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL--- 144 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--- 144 (170)
.......+..+|++++|+|+.....- ...+++..+.. .++| +++++||+|+.+.... ..+++..+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87777778899999999998865321 22333333322 3577 7788999998653221 123455555543
Q ss_pred --CCeEEEEecCCCCC
Q 030880 145 --NVMFIETSAKAGFN 158 (170)
Q Consensus 145 --~~~~~~~s~~~~~~ 158 (170)
+++++.+|+.+|.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 46899999998853
No 247
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.3e-17 Score=115.07 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=102.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL 53 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (170)
...+.++++++|+..+|||||+.+|++..- ..+.. .+.+........
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERe--rGvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERE--RGVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHh--cceEEEEEEEEe
Confidence 456679999999999999999999987311 00111 122222222333
Q ss_pred CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
..+.+.++|+|+||++.|-..+.....+||+.|+|+|+.+.+ +|.. ..+....+.+..+ -..+||++||+|..+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 445568999999999999888888899999999999998763 3322 2222222222222 344788889999986
Q ss_pred ccccCHHH----HHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880 129 KRQVSIEE----GEAKSRELN-----VMFIETSAKAGFNIKV 161 (170)
Q Consensus 129 ~~~~~~~~----~~~~~~~~~-----~~~~~~s~~~~~~i~~ 161 (170)
.++--.++ ...+.+..| ++|+++|+..|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 54333333 333444444 4799999999999865
No 248
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.3e-16 Score=117.33 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=111.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
.+.=|-++|.-..|||||+..|..........-..+.......+..+ .+-.++|.|||||..|..|..+-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 34568899999999999999999876654433333333333444445 34689999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecCCCCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGFN 158 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~ 158 (170)
|+.+.|.- ..+.++.+......++|++|.+||+|.++. +.+...+-....| ++.+++|+++|.|
T Consensus 231 VVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99998752 122334444455578999999999997543 3444444444443 5789999999999
Q ss_pred hHHHhhcC
Q 030880 159 IKVCLMLH 166 (170)
Q Consensus 159 i~~~~~~l 166 (170)
++.+-+.+
T Consensus 304 l~~L~eai 311 (683)
T KOG1145|consen 304 LDLLEEAI 311 (683)
T ss_pred hHHHHHHH
Confidence 99987764
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.73 E-value=5.9e-17 Score=125.63 Aligned_cols=152 Identities=23% Similarity=0.248 Sum_probs=94.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------c--c----------------ceeeeEEEEEEE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------------Y--Q----------------ATIGIDFLSKTM 51 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------------~--~----------------~~~~~~~~~~~~ 51 (170)
+....++|+++|.+++|||||+++|+.....-. . . ...+.+.. ..
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~--~~ 97 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA--YR 97 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee--ee
Confidence 344568999999999999999999996432100 0 0 00111111 11
Q ss_pred EECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
.......++.++||||++.|.......+..+|++++|+|+.....-+ ....+..+... ...+++|++||+|+.+...
T Consensus 98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL--GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh--CCCeEEEEEEecccccchh
Confidence 22234457889999999888666666788999999999987542211 11122222221 1257888999999864221
Q ss_pred cC----HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880 132 VS----IEEGEAKSRELN---VMFIETSAKAGFNIKV 161 (170)
Q Consensus 132 ~~----~~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 161 (170)
.. ..+...+.+..+ ++++++|+++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 122333444444 4699999999999874
No 250
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=1e-16 Score=112.13 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=76.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC------------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
+|+++|.+++|||||+++|+..... .+.....+.+.....+. ..+.++.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~--~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF--WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE--ECCEEEEEEECCCcHHHH
Confidence 6899999999999999999752110 00111122222222222 235789999999999888
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
..+..+++.+|++++|+|+.+.-.-. ....+..+.. .++|+++++||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 88889999999999999998653211 1222233322 45899999999998643
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.2e-16 Score=108.32 Aligned_cols=151 Identities=20% Similarity=0.185 Sum_probs=105.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYI 79 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~ 79 (170)
...-+++++|.|++|||||+++|++........++++.+...-.+...+ ..+++.|+||.-+- ........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3457899999999999999999999876555556666566565555444 78999999983221 12345567
Q ss_pred cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcC----------------------------------------------
Q 030880 80 RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERG---------------------------------------------- 112 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---------------------------------------------- 112 (170)
++||.+++|.|+..+.+ .+.+.+.+........
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999986544 3333333222211100
Q ss_pred -------------------CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 113 -------------------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 113 -------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
..+|.+.|.||+|+.. .++...+.+.. .++.+|+..+.|++++.+.|
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERI 284 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHH
Confidence 1578999999999854 24444444444 78899999999999998765
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=2.5e-16 Score=112.17 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=53.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAGQ- 68 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~- 68 (170)
|.++|.+++|||||++++++........|+++.+....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57899999999999999998765322223322222111111 112 3467999999997
Q ss_pred ---ccccccchh---hhcCCcEEEEEEeCC
Q 030880 69 ---ERFRSLIPS---YIRDSSVAVVVYDVA 92 (170)
Q Consensus 69 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 92 (170)
++...+... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334444334 489999999999997
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.8e-16 Score=116.84 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=95.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC------CC----------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..+.++|+++|..++|||||+++|.+. .. ..+..+..+.+. ....+......+.++||||++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence 346789999999999999999999731 10 011112233333 223344445678999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC---HHHHHHHHhhc-
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL- 144 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~- 144 (170)
.|.......+..+|++++|+|+.....- .....+..+.. .++| +++++||+|+.+..... ..+...+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8876666667789999999998764221 12222222222 3578 46789999997532211 11233333322
Q ss_pred ----CCeEEEEecC---CCCC-------hHHHhhcCC
Q 030880 145 ----NVMFIETSAK---AGFN-------IKVCLMLHP 167 (170)
Q Consensus 145 ----~~~~~~~s~~---~~~~-------i~~~~~~l~ 167 (170)
.++++.+|+. +|.| +.++++.|.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~ 248 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD 248 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence 3578888876 4544 566666553
No 254
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-16 Score=104.92 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=102.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc---CCcEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA 85 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~ 85 (170)
+-.|+++|+.+||||+|.-+|..+...+...+..+ ......... -.++++|.|||++.+.-...+++ ++-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999999865544322221 111121122 23899999999998887777777 79999
Q ss_pred EEEEeCC-ChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccc--c----CHHHHH-----------------
Q 030880 86 VVVYDVA-SRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQ--V----SIEEGE----------------- 138 (170)
Q Consensus 86 i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~--~----~~~~~~----------------- 138 (170)
|||+|.. .+.-..++..++-.+.... ..++|+++++||.|+.-+.. . ...|+.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999965 3334445555554443333 47789999999999863311 0 011111
Q ss_pred -------------HHH--hhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 139 -------------AKS--RELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 139 -------------~~~--~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.|. ....+.|.++|++++ +++++-+|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 011 112357899999988 999999998764
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=8.5e-17 Score=112.47 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=102.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcCCcE
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSSV 84 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~ 84 (170)
|-++|.|++|||||++.+.+.+.--...|+++....--.+.. ...-.+.+-|.||.-+= .......++++.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 567999999999999999986543222333333333333333 34447999999993221 1122344678999
Q ss_pred EEEEEeCCChh---hHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEE-EecCCCCC
Q 030880 85 AVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE-TSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~ 158 (170)
++.|+|++..+ ..++......++..+.. .++|.+||+||+|+....+........+.+..+..... +|+.+++|
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 99999998543 35555566666655543 68999999999996554433344455555555553222 99999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++...+.+
T Consensus 321 ~~~L~~~~~~ 330 (369)
T COG0536 321 LDELLRALAE 330 (369)
T ss_pred HHHHHHHHHH
Confidence 9998876643
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=1.6e-16 Score=118.15 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=101.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccee----eeEEEEE--------EE---EEC------------C
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATI----GIDFLSK--------TM---YLE------------D 55 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~----~~~~~~~--------~~---~~~------------~ 55 (170)
....++|.++|.-..|||||+..|++... ..+..... ++..... .. ..+ +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35678999999999999999999996422 11111111 1110000 00 000 0
Q ss_pred ----eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 56 ----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 56 ----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
....+.++|+||++.|.......+..+|++++|+|+..+.......+.+..+. .. .-.+++++.||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHH
Confidence 02368999999999988777777889999999999986411112223332222 21 1246888999999865322
Q ss_pred c--CHHHHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 132 ~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
. ..+++..+... .+++++.+|+++|.|++++++.|.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 1 12333333322 3579999999999999999988763
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1.1e-15 Score=94.37 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=67.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccchhhhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR 80 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 80 (170)
+|+++|.+|+|||||+|+|++.... ....+..+...........+. .+.++||||...-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985331 111222222333333344443 45799999954311 11233347
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (170)
.+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 22333333342 57999999998
No 258
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=8.2e-16 Score=116.34 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--CC----------c-c-------cceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DN----------T-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~----------~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
....+|+++|+.++|||||+++|+.... .. . . ....+.+.......+....+++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456999999999999999999974111 00 0 0 0011122222223334456789999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
|+..|......+++.+|++++|+|+++.-.. ....++.... ..++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccccc
Confidence 9999888778889999999999999865221 1233333322 246999999999998654
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=8.5e-16 Score=103.22 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=93.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccc--ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cc----h
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI----P 76 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~ 76 (170)
++|+++|.+|+|||||+|.+++........ +..+..+....... .+..+.++||||...... .. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--CCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543221 12222333333333 335799999999554321 11 1
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCcccc------CHHHHHHHHhhcCCeE
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF 148 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 148 (170)
....+.|++++|.++.+ -+- .....+..+...++ .-.+++++.|+.|......+ .....+...+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 12357899999999876 222 22233444444433 12567888899987543211 1244556666666666
Q ss_pred EEEec-----CCCCChHHHhhcCC
Q 030880 149 IETSA-----KAGFNIKVCLMLHP 167 (170)
Q Consensus 149 ~~~s~-----~~~~~i~~~~~~l~ 167 (170)
+..+. ..+.++.++++.+.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~ 180 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVE 180 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHH
Confidence 55554 45678888887664
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.68 E-value=3e-15 Score=117.21 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=91.8
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC----c--------------ccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN----T--------------YQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (170)
.....-.||+++|.+++|||||+++|++..... . .....+.+.....+.. .+.++.+|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEEC
Confidence 334445699999999999999999997521110 0 0112222222233333 3468999999
Q ss_pred CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC
Q 030880 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN 145 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (170)
||+.++...+...++.+|++++|+|+.+....+.. ..+..+.. .++|+++++||+|+..... ......+...++
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~~--~~~~~~i~~~l~ 156 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGANF--LRVVNQIKQRLG 156 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCCH--HHHHHHHHHHhC
Confidence 99998888888889999999999999876443322 22233322 3589999999999875431 122233333333
Q ss_pred C----eEEEEecCCC
Q 030880 146 V----MFIETSAKAG 156 (170)
Q Consensus 146 ~----~~~~~s~~~~ 156 (170)
. ..+.+|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 2 3566666555
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=1.8e-15 Score=114.58 Aligned_cols=118 Identities=22% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCc-------------------ccceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNT-------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
....+|+++|.+++|||||+++|+... .... .....+.+...........++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345799999999999999999986421 1000 00111223333334445556899999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
|+..|......+++.+|++|+|+|+++.-. .....++..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 998888777778999999999999986411 112333333222 4689999999999854
No 262
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=8.2e-16 Score=120.44 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=82.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------C-----cccc---eeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------N-----TYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------~-----~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
.....||+++|..++|||||+++|+..... . .+.+ ..+.+..............+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 345679999999999999999999853210 0 0000 01111111111222345789999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
++...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCC
Confidence 9988889999999999999999887655544333 33322 46899999999998654
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=4e-16 Score=106.34 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=101.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccchhh
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSY 78 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 78 (170)
...+++++++|.+|+|||||+|+|+++...+...-..+.+.........+ .-.+.+||+||-++ |+.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 45789999999999999999999997655433211112222222221122 24799999999554 66677888
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-------ccCHHHHHHHH--------hh
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR-------QVSIEEGEAKS--------RE 143 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~--------~~ 143 (170)
+...|.++++.++.++.=--.. .+++.+.... .+.++++++|.+|...+. ......++++. +.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999877321122 2333333222 458999999999986431 11111111111 11
Q ss_pred cC--CeEEEEecCCCCChHHHhhcCCC
Q 030880 144 LN--VMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 144 ~~--~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.. -+++.++...+-|++++...+++
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~ 219 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALIT 219 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHH
Confidence 11 27788888999999998887754
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.5e-16 Score=113.31 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=102.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-c--------cchh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-S--------LIPS 77 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~ 77 (170)
..++|+++|+|++|||||+|.|...... -...+.++.|.....++++| +++.+.||+|..+-. . ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4589999999999999999999987553 23456666677666666555 789999999977611 1 1233
Q ss_pred hhcCCcEEEEEEeCCC--hhhHHhHHHHHHHHHHh------cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---C
Q 030880 78 YIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTE------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---V 146 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~ 146 (170)
.++.+|++++|+|+.. -++-..+.+.+.....- .+.+.|++++.||.|+...-.-.......+....+ .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 4678999999999943 23322333333333221 12457899999999996551111111111111111 2
Q ss_pred -eEEEEecCCCCChHHHhhcCCC
Q 030880 147 -MFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 147 -~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
...++|+++++|++++.+.|.+
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHH
Confidence 4566999999999998876643
No 265
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.64 E-value=1.8e-15 Score=104.65 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=80.1
Q ss_pred ccccccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880 69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
+++..+.+.+++++|.+++|||+++++ ++..+.+|+..+.. .++|+++|+||+|+.+...+..+.+..+. ..++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 667788888999999999999999887 89999999876643 46999999999999765544444454444 57899
Q ss_pred EEEEecCCCCChHHHhhcCCCC
Q 030880 148 FIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
++++|+++|.|++++|+.+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCC
Confidence 9999999999999999998753
No 266
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.64 E-value=4e-15 Score=103.62 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=110.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEE--EECCeEEEEEEEeCCCcccccccchhhhcC----
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERFRSLIPSYIRD---- 81 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 81 (170)
..-+|+++|+.|+|||||+.+|.+.. .+.+..+..+....+ ..++...++.+|-..|.--+..+....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 44689999999999999999998865 223334444433332 234445678888877755444444333332
Q ss_pred CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCC-----------------------------------------------
Q 030880 82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGS----------------------------------------------- 113 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~----------------------------------------------- 113 (170)
-..+|++.|+++|.+ ++.++.|...+..+...
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 246788999999954 44477787666544321
Q ss_pred --------------CCeEEEEEeCCCCCC----c-------cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 114 --------------DVIIVLVGNKTDLVE----K-------RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 114 --------------~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++|++||++|+|... + .......++.||.++|...+.+|++...|++-+..+|..
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 679999999999831 1 122345678999999999999999999999999888753
No 267
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=6e-15 Score=115.49 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--------CC----------cccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
....+|+++|..++|||||+++|+.... .. +..+..+.+.....+.. .+.++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence 3457899999999999999999975211 00 01122222333333333 3468999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
..+...+...++.+|++++|+|+......... ..+..+. ..++|.++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCC
Confidence 88888888889999999999999865332221 2222222 24589999999999864
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2e-14 Score=105.43 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=55.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG 67 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g 67 (170)
++|.++|.|++|||||+|+|++........++.+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998766432233333222221111 11 1236789999999
Q ss_pred c----ccccccchhh---hcCCcEEEEEEeCC
Q 030880 68 Q----ERFRSLIPSY---IRDSSVAVVVYDVA 92 (170)
Q Consensus 68 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 92 (170)
. .+...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233333344 88999999999996
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-14 Score=109.23 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=72.0
Q ss_pred EEEEEEeCCCcccc-----cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 58 VRLQLWDTAGQERF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 58 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
..+.++||||.... .......+..+|++++|+|..+..+..+. ..+..+.. .....|+++|+||+|..+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk-~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILA-VGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence 35789999996542 22344568999999999999875333321 12233332 2223599999999998643332
Q ss_pred CHHHHHHHHhh----c---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 133 SIEEGEAKSRE----L---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 133 ~~~~~~~~~~~----~---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
..+....+... . ...++++||++|.|++++++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34445444321 1 237999999999999999988754
No 270
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=6e-15 Score=115.46 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CC----------------cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
...-.||+++|.+++|||||+++|+.... .. +..+..+.+.....+... +..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 33456999999999999999999974211 00 012223333333333333 46899999999
Q ss_pred cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV- 146 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 146 (170)
+..+.......++.+|++++|+|+...-..+... .+..+.. .++|.++++||+|+.++. ......++.+.++.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN 158 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 9888776777789999999999987653322222 2222222 458889999999987543 12223333333333
Q ss_pred ---eEEEEecCCC
Q 030880 147 ---MFIETSAKAG 156 (170)
Q Consensus 147 ---~~~~~s~~~~ 156 (170)
..+++|+..+
T Consensus 159 ~~~~~ipisa~~~ 171 (693)
T PRK00007 159 PVPIQLPIGAEDD 171 (693)
T ss_pred eeeEEecCccCCc
Confidence 4466676665
No 271
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.2e-14 Score=102.15 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=105.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CcccceeeeEEEEEEEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---------------------------------NTYQATIGIDFLSKTMY 52 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 52 (170)
....+|++-+|...-||||||.+|++.... .+.....+++... ..
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAY--Ry 80 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAY--RY 80 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEe--ee
Confidence 345689999999999999999999874110 0111122333333 33
Q ss_pred ECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
..-...+|.+-|||||++|...+..-..-||..|+++|+ +....+..+...-+....+ -..+++..||+|+.+..+.
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence 344556899999999999999888888999999999998 4444444444444444432 2446777899999876554
Q ss_pred CH----HHHHHHHhhcCC---eEEEEecCCCCChHH
Q 030880 133 SI----EEGEAKSRELNV---MFIETSAKAGFNIKV 161 (170)
Q Consensus 133 ~~----~~~~~~~~~~~~---~~~~~s~~~~~~i~~ 161 (170)
.. .+-..++.+++. .++++||+.|.|+-.
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 33 334567777775 799999999999754
No 272
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.60 E-value=3.6e-14 Score=95.24 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=63.9
Q ss_pred EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (170)
....++++.|......... . -++.+|.|+|+.+.++... .....+. ..-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 4567888888432222221 1 2678999999987655321 1112221 12278889999975322333444
Q ss_pred HHHHhh--cCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 138 EAKSRE--LNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 138 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.+..+. .+.+++++|+++|+|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444444 45799999999999999999998764
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.60 E-value=1.2e-15 Score=103.87 Aligned_cols=111 Identities=19% Similarity=0.144 Sum_probs=66.1
Q ss_pred EEEEEEEeCCCcccc------cccchhhhcCCcE--EEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 57 TVRLQLWDTAGQERF------RSLIPSYIRDSSV--AVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~------~~~~~~~~~~~~~--~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
...+.++|||||-+- .+.....+..... +++++|..... .---+..++-.....+..++|.|++.||+|+.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 457899999996542 2233333444444 44455533221 12224556666666666789999999999997
Q ss_pred Ccccc--------CHHHHHHH---------Hh---------hcCCeEEEEecCCCCChHHHhhcCC
Q 030880 128 EKRQV--------SIEEGEAK---------SR---------ELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 128 ~~~~~--------~~~~~~~~---------~~---------~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
+.... ..+++.+- .. -.++..+.||+.+|.|.+++|..+-
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~ 260 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD 260 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence 54110 01111110 00 1146789999999999999998753
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.60 E-value=8e-15 Score=105.02 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=83.9
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
..+.+.+||++|++..+..|..++.+++++++|+|+++- +.+.+....+..+..... .++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 356899999999999999999999999999999999863 456666666666655443 689999999999
Q ss_pred CCCCc----------------cccCHHHHHHHHhh----------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 125 DLVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 125 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+..+ ..-+.+++..+... ..+..+.++|.+..++..+|+.+..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~ 308 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKD 308 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHH
Confidence 96421 02234455444432 2345677899999999999877643
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.60 E-value=2.3e-14 Score=114.67 Aligned_cols=141 Identities=24% Similarity=0.260 Sum_probs=90.0
Q ss_pred CCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC----------------eEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 20 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
++||||+.++.+......-....+.......+..+. ..-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999998766443322222222222222211 0013899999999999888877888999
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC----------------HHHHH----HH
Q 030880 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----------------IEEGE----AK 140 (170)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~ 140 (170)
++++|+|+++ +++++.+. .+.. .++|+++++||+|+.+..... .++.. ..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 44444332 2222 358999999999986432210 01110 00
Q ss_pred ---Hhh---------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880 141 ---SRE---------------LNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 141 ---~~~---------------~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
..+ ..++++++||++|+|+++++++|.
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 011 135899999999999999998764
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.60 E-value=5.1e-14 Score=99.03 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccch---hhhc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYIR 80 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~~ 80 (170)
++...++|+++|.+|+||||++|++++...... .....+.......... .+.++.++||||......... ..++
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 345789999999999999999999998764221 1111122222222222 356899999999664322111 1122
Q ss_pred ------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCc
Q 030880 81 ------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 81 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~ 129 (170)
..|++++|..++....-+.-...+..+...++ .-.+++|+.|+.|..++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 68999999665533211122233344444332 22468999999997644
No 277
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.60 E-value=3.2e-15 Score=89.99 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=94.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc----ccccccchhhhcCCcEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i 86 (170)
|++++|..|+|||||.+.|.+..... ..+...++ ... -.+||||. +.+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 78999999999999999998765421 22222111 111 15799983 233333344467899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (170)
++-.++++++-- -..+... -..|+|=+++|.|+.+.. ..+..++|..+-|. ++|++|+.+..|+++++++
T Consensus 70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Ccccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999886521 1111111 235588888999997533 45678889989898 8999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 753
No 278
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=6.5e-14 Score=96.86 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L------- 74 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~------- 74 (170)
...+++|+++|.+|+|||||+|.+++....... ....+.......... .+.++.+|||||...... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 356799999999999999999999987653221 111222222222222 346789999999654311 1
Q ss_pred chhhhc--CCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCc
Q 030880 75 IPSYIR--DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK 129 (170)
Q Consensus 75 ~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 129 (170)
...+++ ..|+++++..++... ... ....+..+...++. -.++++|.||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 122333 578888887665432 222 12333444433321 2568999999998644
No 279
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.2e-14 Score=105.59 Aligned_cols=155 Identities=25% Similarity=0.285 Sum_probs=104.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--------------------C---------CcccceeeeEEEEEEEEECCe
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--------------------D---------NTYQATIGIDFLSKTMYLEDR 56 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------------~---------~~~~~~~~~~~~~~~~~~~~~ 56 (170)
+...++++++|...+|||||+.++++... . ....+..+++.......++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 34568999999999999999999986311 0 011122333444444445566
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHH--HHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWI--DEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
...++++|+||+..|-..+......+|..++|+|++.. .+|+...+.. ..+.+..+ -..++|++||+|+.+..+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence 67899999999999988888889999999999999854 2444322222 22222222 345788889999987655
Q ss_pred cCHHHHH----HHH-hhcC-----CeEEEEecCCCCChHH
Q 030880 132 VSIEEGE----AKS-RELN-----VMFIETSAKAGFNIKV 161 (170)
Q Consensus 132 ~~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~i~~ 161 (170)
--.+++. .+. +..| +.|++||+.+|+|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 4444443 333 3333 4899999999999753
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.58 E-value=1.6e-14 Score=113.41 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=78.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
...||+++|+.++|||||+++|+... +... ...+.............+..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34699999999999999999998531 1000 01122112222223345667899999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
+|.......++.+|++++|+|+...-..+.. ..+.... ..+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH---HcCCCEEEEEEChhccc
Confidence 9888888889999999999998764222111 1112221 24578889999999853
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.56 E-value=7.1e-14 Score=100.92 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=81.6
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 125 (170)
...+.+||.+|+...+..|..++.+++++++|+|+++ ...+.+....+..+.+... .++|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 3578999999999999999999999999999999996 2456666666666655433 6799999999999
Q ss_pred CCCc---------------cccCHHHHHHHHhh-----------cCCeEEEEecCCCCChHHHhhcCC
Q 030880 126 LVEK---------------RQVSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 126 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
+..+ ..-+.+.+..+... ..+..+.++|.+..++..+|+.+.
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8521 00133444443321 224567888999999999987654
No 282
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.55 E-value=1.3e-13 Score=85.78 Aligned_cols=114 Identities=36% Similarity=0.405 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997776653332 2221 223334457788999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
|+.+.+++++.+ |...+......++|.++++||.|+.....+..++.. .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998766 777766555567889999999998543334333333 34567788888764
No 283
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.1e-14 Score=99.84 Aligned_cols=162 Identities=18% Similarity=0.142 Sum_probs=110.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC---Ccccceeee------------------EEEEEEEEEC------CeEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGI------------------DFLSKTMYLE------DRTVR 59 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~------------------~~~~~~~~~~------~~~~~ 59 (170)
...+||-++|.-..|||||..+|.+--.. .+.....+. +.+...-.+. .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56899999999999999999999862111 110000000 0000000011 12347
Q ss_pred EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHH
Q 030880 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEG 137 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~ 137 (170)
+.|+|.|||+-....+..-..-.|+.++|++++.+..-...+..+-.+...- -..++++-||+|+..+.+ .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999877766666677899999999997655444555554443332 256889999999975432 346777
Q ss_pred HHHHhhc---CCeEEEEecCCCCChHHHhhcCCCCC
Q 030880 138 EAKSREL---NVMFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
++|.+.- +++++++||..+.|+|.+++.|.+.|
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 7777643 67999999999999999999987654
No 284
>PRK13768 GTPase; Provisional
Probab=99.53 E-value=5.3e-14 Score=97.84 Aligned_cols=109 Identities=22% Similarity=0.170 Sum_probs=68.5
Q ss_pred EEEEEeCCCcccc---cccchhhhc---C--CcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 59 RLQLWDTAGQERF---RSLIPSYIR---D--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.+.+||+||+.+. +..+..+++ . ++++++++|+........ ...++.........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997664 333333332 2 899999999975433222 122222211111247999999999998654
Q ss_pred cccCHHHHHH----------------------------HHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880 130 RQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 130 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.+. ++... ..+..+ .+++.+|++++.|++++.++|.+.
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 322 11111 122333 588999999999999999988653
No 285
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.52 E-value=5.9e-13 Score=99.14 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=107.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE--CCeEEEEEEEeCCCcccccccchhhhc----
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIR---- 80 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~---- 80 (170)
...-+|+|+|..++|||||+.+|.+.. .+.++.+.++....+.- .....++.+|-..|...+..+....+.
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 445789999999999999999987643 23344444444433322 223457899999886666665555444
Q ss_pred CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcC-----------------------------------------------
Q 030880 81 DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG----------------------------------------------- 112 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~----------------------------------------------- 112 (170)
.--.+|+|.|.+.|..+- .+..|+..+..+..
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 235688899999985543 35555433322110
Q ss_pred ---------------CCCeEEEEEeCCCCCCc-----------cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 113 ---------------SDVIIVLVGNKTDLVEK-----------RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 113 ---------------~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
.++|++||++|+|.... ..+..+.++.+|..+|+.++.+|++...+++.++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 04799999999997421 1122455788889999999999999999999888775
Q ss_pred C
Q 030880 167 P 167 (170)
Q Consensus 167 ~ 167 (170)
.
T Consensus 260 ~ 260 (472)
T PF05783_consen 260 L 260 (472)
T ss_pred H
Confidence 3
No 286
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=6.6e-14 Score=95.07 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=85.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------ch----
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP---- 76 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~---- 76 (170)
++|+++|.+|+||||++|.+++......... ..+..+........+ ..+.++||||....... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999999876544321 122233333334445 57899999994322111 11
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCccccC-------HHHHHHHHhhcCCe
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM 147 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (170)
....+.|++++|+.++ +-+- .....+..+...++. -..++|+.|..|......+. ......+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 1234689999999988 3221 122233333333331 24578888888865543311 12345666667777
Q ss_pred EEEEecC------CCCChHHHhhcC
Q 030880 148 FIETSAK------AGFNIKVCLMLH 166 (170)
Q Consensus 148 ~~~~s~~------~~~~i~~~~~~l 166 (170)
|+..+.+ ....+.++++.+
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~i 181 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKI 181 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHH
Confidence 7777766 223455555543
No 287
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=2.3e-13 Score=106.57 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=84.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCC--C----------------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccch
Q 030880 15 LGDQSVGKTSIITRFMYDKFD--N----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (170)
Q Consensus 15 ~G~~~~GKstli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 76 (170)
+|+.++|||||+++|+..... . +..+..+.......+. ..++.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~--~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE--WKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE--ECCEEEEEEECCCcHHHHHHHH
Confidence 599999999999999653211 0 0011122222222222 2457899999999988877788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--eEEEEecC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAK 154 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~ 154 (170)
.+++.+|++++++|++..........| ..+.. .++|+++++||+|..... ......++...++. ....+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~ 152 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIG 152 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCceeEEeccc
Confidence 889999999999999876554433322 33222 468999999999986432 22333444444443 22334444
Q ss_pred CCCChH
Q 030880 155 AGFNIK 160 (170)
Q Consensus 155 ~~~~i~ 160 (170)
.+.++.
T Consensus 153 ~~~~~~ 158 (668)
T PRK12740 153 EGDDFT 158 (668)
T ss_pred CCCCce
Confidence 444443
No 288
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.51 E-value=4.4e-13 Score=99.63 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=114.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..+-+++.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 345689999999999999999999998887766566655666666666676667888887753 222222222 789999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 164 (170)
+++||.+++.+|+.....++..... ...|+++|++|+|+.+..+...-+-.++++++++ +.+..|.++... .++|.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 9999999999998887766554333 5799999999999976554333333888999998 456667765323 67777
Q ss_pred cCC
Q 030880 165 LHP 167 (170)
Q Consensus 165 ~l~ 167 (170)
.|+
T Consensus 577 kL~ 579 (625)
T KOG1707|consen 577 KLA 579 (625)
T ss_pred HHH
Confidence 664
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.48 E-value=2.5e-13 Score=108.28 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=78.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC------------C----cccceeeeEEEEEEEEE--------------CCe
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD------------N----TYQATIGIDFLSKTMYL--------------EDR 56 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~----~~~~~~~~~~~~~~~~~--------------~~~ 56 (170)
..-.||+++|+.++|||||+++|+..... + +.....+.......... .+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34569999999999999999999864311 0 00111111211111211 223
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
.+.++++||||+.+|.......++.+|++|+|+|+...-.......| ..+. ..++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 67899999999999988888889999999999999865332222222 2222 2468999999999986
No 290
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=4.8e-13 Score=90.60 Aligned_cols=151 Identities=20% Similarity=0.246 Sum_probs=83.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC------------cccc----eeeeEEEEEEE---E-------------ECC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN------------TYQA----TIGIDFLSKTM---Y-------------LED 55 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~------------~~~~----~~~~~~~~~~~---~-------------~~~ 55 (170)
....+.++|..|+|||||+++++...... ..+. ..+........ . ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 45789999999999999999987541100 0000 00000000000 0 000
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (170)
....+.++++.|.-. .. ..+....+..+.++|+.+..... ... ... ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 123667777777210 00 11112345556777776543211 111 111 23567999999999654333334
Q ss_pred HHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880 136 EGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 136 ~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+..+..++.+ .+++.+|+++|.|++++|+++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4444444443 789999999999999999998754
No 291
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=99.65 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=107.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-----cc----ch
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-----SL----IP 76 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~----~~ 76 (170)
+...-.++++|-|++|||||++.+........+.++++...+.. ..+-.-..++++||||.-..- .. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45567899999999999999999987766544444443222221 223344579999999932211 10 01
Q ss_pred hhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH---HHHHHhhcCCeEEEE
Q 030880 77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET 151 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 151 (170)
...+--.+++++.|++.. .|.++....+..+...+ .+.|.|+|+||+|+.....++.+. .......-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 111223457888898854 67888888888888887 689999999999998776665433 333444455899999
Q ss_pred ecCCCCChHHHhhc
Q 030880 152 SAKAGFNIKVCLML 165 (170)
Q Consensus 152 s~~~~~~i~~~~~~ 165 (170)
|+.+.+|+.++...
T Consensus 322 S~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTT 335 (620)
T ss_pred cccchhceeeHHHH
Confidence 99999998876543
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=8e-15 Score=100.76 Aligned_cols=108 Identities=23% Similarity=0.119 Sum_probs=59.0
Q ss_pred EEEEEeCCCcccccccchhhh--------cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+......+.|.+.|.||+|+.++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 789999999998766554433 34567888888764332 222344444444333356999999999999762
Q ss_pred c----------------------ccCHHHHHHHHhhcC-C-eEEEEecCCCCChHHHhhcC
Q 030880 130 R----------------------QVSIEEGEAKSRELN-V-MFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 130 ~----------------------~~~~~~~~~~~~~~~-~-~~~~~s~~~~~~i~~~~~~l 166 (170)
. .....+..+....++ . .++.+|+.+++|+.+++..+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 1 000112222223334 3 79999999999999998765
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.46 E-value=5.1e-13 Score=106.41 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=77.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CeEEEEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLW 63 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~ 63 (170)
...||+++|+.++|||||+++|+..... . +.....+.........+. +..+.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 3459999999999999999999863211 0 000111111111122222 235789999
Q ss_pred eCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 64 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
||||+.+|.......++.+|++++|+|+...-.... ...+..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999988888888999999999999886532222 222233322 358999999999985
No 294
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=1.8e-12 Score=94.38 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF 71 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 71 (170)
...++|.++|.|++|||||+|+|.+........|.++.+.....+.+.+. ...+.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34579999999999999999999887654444455554544444443322 235899999994421
Q ss_pred c-------ccchhhhcCCcEEEEEEeCC
Q 030880 72 R-------SLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 72 ~-------~~~~~~~~~~~~~i~v~d~~ 92 (170)
. ......++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12233467899999999973
No 295
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.46 E-value=2.6e-13 Score=88.48 Aligned_cols=148 Identities=23% Similarity=0.197 Sum_probs=87.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEE-------------EE------E----------------C
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-------------MY------L----------------E 54 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-------------~~------~----------------~ 54 (170)
++|-+.|++|||||+|+.+++............+.+.++.. .. + .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 78999999999999999998764322211222222222210 00 0 0
Q ss_pred CeEEEEEEEeCCCcccccccchhhhc-CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 133 (170)
.....+.|++.+| .... ..... ..+.-|+|+|++..+-.. .+-.+.+. ..=++|+||.|+.+....+
T Consensus 94 ~~~~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~d 161 (202)
T COG0378 94 FPDLDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGAD 161 (202)
T ss_pred CCcCCEEEEecCc--ceec--ccCcchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCcc
Confidence 0113455555555 1111 11111 223667777877542110 00001111 1238889999998888777
Q ss_pred HHHHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880 134 IEEGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.+...+-+++.+ .+++++|.++|+|++++++|+...
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 777777777665 799999999999999999998653
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.44 E-value=4.1e-12 Score=87.01 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=81.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.++..|+++|++|+|||||++.+.............+ .. .+ ......++.++||||.- .......+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 4557799999999999999999986532211111111 01 11 12245678999999853 22234468899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCcccc-C--HHHHHH-HHhh--cCCeEEEEecCCCC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQV-S--IEEGEA-KSRE--LNVMFIETSAKAGF 157 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~-~--~~~~~~-~~~~--~~~~~~~~s~~~~~ 157 (170)
+++|.+....... ...+..+.. .+.|. ++++||+|+.+.... . ..+++. +..+ .+.+++.+|+++.-
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999875433222 122222222 34664 458999998643211 1 122222 2221 24689999988763
No 297
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.44 E-value=1.5e-12 Score=94.80 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--CC------------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF--DN------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 75 (170)
-||+++.....|||||+..|+.+.. .. ....-.+++...+...+.-.+++++|+|||||-.|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 5899999999999999999987422 11 111223444555555455556899999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCCe
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM 147 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (170)
.+.++=+|++++++|+....-- ..+-.+.. ....+.+.|||+||+|...++.. -.++...+.. +++.+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMP-QTrFVlkK---Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMP-QTRFVLKK---ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCC-chhhhHHH---HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999864211 11111222 22245777888999998765421 1233333333 34568
Q ss_pred EEEEecCCCC----------ChHHHhhcCCC
Q 030880 148 FIETSAKAGF----------NIKVCLMLHPN 168 (170)
Q Consensus 148 ~~~~s~~~~~----------~i~~~~~~l~~ 168 (170)
++..|++.|. ++.-+|+.|.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~ 192 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILD 192 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHH
Confidence 9999999874 46667766543
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.43 E-value=2.6e-12 Score=91.94 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CH
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 134 (170)
++.+.|+||+|..+-.. .....+|.++++.+......+...+. .+... .-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHH
Confidence 47899999999763322 24668999999977544444433332 12111 12788999998654321 11
Q ss_pred HHHHHHHhh-------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 135 EEGEAKSRE-------LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.+....... ...+++.+|++++.|++++++.|.+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 222222221 1257999999999999999988753
No 299
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.43 E-value=7.6e-12 Score=90.28 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=56.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeE---------------EEEEEEeCCCcccccc-
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS- 73 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~- 73 (170)
++|.++|.|++|||||+|+|++........|.++.+.....+.+.+.. ..+.++|+||...-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877533333444444443333333321 2589999999432111
Q ss_pred ------cchhhhcCCcEEEEEEeCC
Q 030880 74 ------LIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 74 ------~~~~~~~~~~~~i~v~d~~ 92 (170)
.....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222367999999999984
No 300
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.41 E-value=5.8e-12 Score=88.65 Aligned_cols=138 Identities=13% Similarity=0.169 Sum_probs=75.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc---c
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---I 75 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~ 75 (170)
.++|+++|.+|+|||||+|.|++....... ..+...........-.+..+.++++||||....... |
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986543321 122223333344455677889999999993321000 0
Q ss_pred ---hhh---------------------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 76 ---PSY---------------------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 76 ---~~~---------------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
..| =...|++++.++++...--+.-...+..+ ...+++|-|+.|.|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL----SKRVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH----TTTSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh----cccccEEeEEecccccCHHH
Confidence 000 12578999999987532111111222333 24588999999999865432
Q ss_pred cC--HHHHHHHHhhcCCeEEE
Q 030880 132 VS--IEEGEAKSRELNVMFIE 150 (170)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~ 150 (170)
.. ...+..-.+..++.+|.
T Consensus 160 l~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 160 LQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHHHHcCceeec
Confidence 21 23344444555665444
No 301
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.1e-12 Score=103.48 Aligned_cols=116 Identities=21% Similarity=0.153 Sum_probs=76.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------------ccceeeeEEE--EEEEEECCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------------YQATIGIDFL--SKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
...+|+++|+.++|||||+++|+.....-. .....+.... .......+..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 345899999999999999999986321100 0000111111 1111224456789999999999
Q ss_pred cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
+|.......++.+|++++|+|+...-... ....+..... .+.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence 99888888899999999999987653222 2222222222 246778999999975
No 302
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.6e-12 Score=88.88 Aligned_cols=161 Identities=20% Similarity=0.166 Sum_probs=94.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC-------CCCCcccceeeeEEEEEEEE-------ECCeEEEEEEEeCCCccc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYD-------KFDNTYQATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~ 70 (170)
.+...+|+-++|.-.||||||.+++..- +.+.......+.+..-..+. ..++...++++|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 3445599999999999999999998752 11222222222222211111 235567889999999764
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---HHHHHHHHhhc---
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSREL--- 144 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~--- 144 (170)
.-........-.|..++|+|+.....-+... -..+.+.. -...+||+||+|..++.+.. ........+.+
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAE--cLiig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAE--CLIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccch--hhhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 3333333334457889999987542111111 11122222 24467788999987653322 12222222222
Q ss_pred ----CCeEEEEecCCC----CChHHHhhcCCCC
Q 030880 145 ----NVMFIETSAKAG----FNIKVCLMLHPNT 169 (170)
Q Consensus 145 ----~~~~~~~s~~~~----~~i~~~~~~l~~~ 169 (170)
+.+++++|+..| +++.++.+.|.++
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 369999999999 8888888776544
No 303
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.38 E-value=7.2e-12 Score=89.41 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCC
Q 030880 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 126 (170)
..+.++|++||...+..|..++.+++++++|.++++- ..+.+....++.+-+..+ .+.++|++.||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6889999999999999999999999999999999842 233344445555555444 68999999999998
Q ss_pred CCc--------------c-ccCHHHHHHHHhhc----------CCeEEEEecCCCCChHHHhhcCC
Q 030880 127 VEK--------------R-QVSIEEGEAKSREL----------NVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 127 ~~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.++ . .-..+++..+.+.. .+-...+.|.+..+|+.+|..+.
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 632 1 12344454444321 24566778999999999988754
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=5.4e-12 Score=91.12 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeee---EEEEEEEEECCeEEEEEEEeCCCcccccccchhh-----h
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~ 79 (170)
.+++|+|+|.+|+|||||||.|.+-...+.....++. +........+. .-.+.+||.||.....-....| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999999863332221111110 11111111111 1258999999965433333333 4
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCC-------CccccC----HHHHHHHHh----h
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV-------EKRQVS----IEEGEAKSR----E 143 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~----~~~~~~~~~----~ 143 (170)
...|.+|++.+ +.|.....++ .++.+ .++|+.+|-+|+|.. .++... .+++++.+. +
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 57898888776 2343433333 33433 358999999999961 111222 223333332 2
Q ss_pred cCC---eEEEEecCCCC
Q 030880 144 LNV---MFIETSAKAGF 157 (170)
Q Consensus 144 ~~~---~~~~~s~~~~~ 157 (170)
.|+ ++|.+|+.+-.
T Consensus 186 ~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp TT-SS--EEEB-TTTTT
T ss_pred cCCCcCceEEEeCCCcc
Confidence 343 78999998744
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.35 E-value=7.5e-12 Score=82.02 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=42.9
Q ss_pred EEEEEeCCCccc----ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030880 59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (170)
Q Consensus 59 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 124 (170)
.+.++|+||... ....+..++..+|++++|.++++.-+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 578999999532 3456788889999999999999865544444444444332 23478888984
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.1e-11 Score=93.74 Aligned_cols=120 Identities=21% Similarity=0.226 Sum_probs=83.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--------------CC----cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--------------DN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
...-.||.++|+..+|||||..+++.... .+ +.....++......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 44557899999999999999999986311 00 1111222333333333333 58999999999
Q ss_pred cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
|-.|.......++-+|++++|+|+...-..+.-.-|.... ..++|.+++.||+|.....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccC
Confidence 9999999999999999999999998653333333332222 2469999999999986543
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.34 E-value=6.9e-12 Score=89.44 Aligned_cols=101 Identities=18% Similarity=0.022 Sum_probs=62.3
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-- 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 134 (170)
++.+.|+||+|-... .......+|.++++-.. .+-+++......+ .++|.++++||+|+.+......
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 578899999985422 22346678888887543 3334444433333 2466799999999865432110
Q ss_pred H----HHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 135 E----EGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 135 ~----~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
. ....+... .+.+++.+|++++.|+++++++|.+
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 0 00111111 2236899999999999999998754
No 308
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.33 E-value=2.2e-11 Score=85.14 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=54.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR---- 72 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~---- 72 (170)
+.++|.|++|||||+|+|++........|.++.+.....+.+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999997764444455554544444444332 1358999999944211
Q ss_pred c---cchhhhcCCcEEEEEEeCC
Q 030880 73 S---LIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 73 ~---~~~~~~~~~~~~i~v~d~~ 92 (170)
. .....++++|+++.|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1222367899999999873
No 309
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.7e-12 Score=96.69 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=98.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceee----eEEEEEE--------EEECC----eEEEEEEEeCCCccccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKT--------MYLED----RTVRLQLWDTAGQERFR 72 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~----~~~~~~~--------~~~~~----~~~~~~i~D~~g~~~~~ 72 (170)
..=||++|...+|||-|+..+.+...........+ .++.... +.-++ .---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 34589999999999999999987554332222211 1111111 00001 11247899999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC----------------
Q 030880 73 SLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---------------- 133 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------------- 133 (170)
.+..+....||.+|+|+|+-+. ++. ..+......+.|+||..||+|..-.+...
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqti-------ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-------ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchh-------HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999998754 222 22222233679999999999974221100
Q ss_pred --------HHHHHHHHhh-cC-------------CeEEEEecCCCCChHHHhhcCCC
Q 030880 134 --------IEEGEAKSRE-LN-------------VMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 134 --------~~~~~~~~~~-~~-------------~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
..-+.+|+.+ ++ +.++++||.+|+||.+++.+|.+
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 0111122211 11 36799999999999999988865
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=6.1e-11 Score=81.42 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=52.8
Q ss_pred EEEEEEeCCCcccc-------------cccchhhhcC-CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880 58 VRLQLWDTAGQERF-------------RSLIPSYIRD-SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 58 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (170)
..++++|+||.... ..+...|+++ .+.+++|.|+...-.-.........+ .....++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence 47899999996321 1245566774 45888899876432211212222222 2246899999999
Q ss_pred CCCCCccccCHHHHHHHHhh----cCCeEEEEecCCCC
Q 030880 124 TDLVEKRQVSIEEGEAKSRE----LNVMFIETSAKAGF 157 (170)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~ 157 (170)
.|..++..- .....+. ++..|+-+-.....
T Consensus 202 ~D~~~~~~~----~~~~~~~~~~~l~~g~~~v~nr~~~ 235 (240)
T smart00053 202 LDLMDEGTD----ARDILENKLLPLRRGYIGVVNRSQK 235 (240)
T ss_pred CCCCCccHH----HHHHHhCCccccCCCEEEEECCChH
Confidence 998654311 3333332 34456666555443
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.6e-12 Score=83.05 Aligned_cols=145 Identities=25% Similarity=0.336 Sum_probs=88.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-----ccchhhhcCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-----SLIPSYIRDS 82 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~ 82 (170)
.-||+++|.+|+|||++-..+..+... +...++.+++..-..... -++..+.+||++|++.+. ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 458999999999999987766644321 122222222221111111 134679999999988542 2345568899
Q ss_pred cEEEEEEeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCCCCCccc--cCH----HHHHHHHhhcCCeEEEEec
Q 030880 83 SVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSI----EEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~s~ 153 (170)
++++++||++..+--.+...+ ++.+.++. +...+.....|+|+..... ... +....+....++.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999977554444443 34444433 6677888889999975432 222 2233333444566777776
Q ss_pred CC
Q 030880 154 KA 155 (170)
Q Consensus 154 ~~ 155 (170)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 54
No 312
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=3.1e-10 Score=82.59 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=90.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC----CCCCc------------ccce---eeeE--E---EEEEEE-ECCeEEEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD----KFDNT------------YQAT---IGID--F---LSKTMY-LEDRTVRLQL 62 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~----~~~~~------------~~~~---~~~~--~---~~~~~~-~~~~~~~~~i 62 (170)
..+.|.++|+.++|||||+++|.+. ...+. ..+. ++.+ + ....+. .++-..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4688999999999999999999987 22210 0111 1111 1 111222 2344568999
Q ss_pred EeCCCccc--------ccc------c---------------chhhhc-CCcEEEEEE-eCC----ChhhHHh-HHHHHHH
Q 030880 63 WDTAGQER--------FRS------L---------------IPSYIR-DSSVAVVVY-DVA----SRQSFLN-TSKWIDE 106 (170)
Q Consensus 63 ~D~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~-~~~~~~~ 106 (170)
+||+|... -.. - ....+. +++..++|. |.+ .++.+.+ -.+++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998221 011 0 222344 789988888 654 1123333 3455555
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC--CCChHHHhhc
Q 030880 107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKVCLML 165 (170)
Q Consensus 107 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~ 165 (170)
+.. .++|++++.||.|...+. ..+....+...++++++.+|+.. ...+..+++.
T Consensus 176 Lk~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HHh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 544 469999999999943222 33445566677888877777654 4455555544
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.26 E-value=1e-10 Score=89.40 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------c----ch
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------L----IP 76 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~----~~ 76 (170)
..++|+++|.+|+||||++|.+++........ ...+........... +..+.++||||...... . ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 35789999999999999999999876432221 111222222222233 35799999999654311 1 12
Q ss_pred hhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCC
Q 030880 77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE 128 (170)
Q Consensus 77 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~ 128 (170)
.+++ ..|++++|..++......+-..++..+...++.+ ..+||+.|+.|..+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 4899999988764433223335556665555422 34788889999875
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.24 E-value=2.3e-11 Score=85.15 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=39.7
Q ss_pred CeEEEEEeCCCCCCccccCHHHHHHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 115 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.+-++++||+|+.+......+...+..+.. +++++.+|+++|+|++++.+||.+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445888999999754333334444444443 479999999999999999999865
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.24 E-value=1.7e-10 Score=82.06 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=84.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---c
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L 74 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~ 74 (170)
..++|+++|+.|+|||||+|.|++....+. ..++.........+..++-...++++||||....-. .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998743322 223444555555566677788999999999333111 1
Q ss_pred c-----------hhhh--------------cCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 75 I-----------PSYI--------------RDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 75 ~-----------~~~~--------------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
| ..|+ ..+|++++...++.. ++..+. ..+..+. ..+.+|-|+.|.|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 1 1111 147888888876643 222221 1122222 4577888889999865
Q ss_pred ccccC--HHHHHHHHhhcCCeEEE
Q 030880 129 KRQVS--IEEGEAKSRELNVMFIE 150 (170)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~ 150 (170)
..+.. .+.+.+.....++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 43322 34455555666776663
No 316
>PRK12289 GTPase RsgA; Reviewed
Probab=99.22 E-value=1.2e-10 Score=84.43 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=68.7
Q ss_pred cccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEE
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
..+....++++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+...... ..........++.++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 344555688999999999998775 44456777765532 46899999999999643221 2223333567889999
Q ss_pred EecCCCCChHHHhhcCCCC
Q 030880 151 TSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~ 169 (170)
+|++++.|++++++.|...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988753
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=8.8e-11 Score=85.23 Aligned_cols=152 Identities=17% Similarity=0.082 Sum_probs=99.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC---CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
-|...|.--.|||||+..+.+... +......++.+...... +.....+.|+|.||++++-+.....+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467789999999999999987543 22233334444333333 3334489999999999988777777889999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc---CCeEEEEecCCCCChHHHhh
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL---NVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~ 164 (170)
|+++++.-.. ...+.+..+ ... .....++|+||+|..++..+ .+..++..... +.+++.+|+++|+||+++.+
T Consensus 80 vV~~deGl~~-qtgEhL~iL-dll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMA-QTGEHLLIL-DLL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcch-hhHHHHHHH-Hhc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999643111 111222222 222 12345888999999765422 12233333322 45889999999999999998
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
.|.+
T Consensus 156 ~l~~ 159 (447)
T COG3276 156 ELID 159 (447)
T ss_pred HHHH
Confidence 8765
No 318
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.4e-10 Score=87.91 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=83.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------eeeeEEEEEEEE---ECCeEEEEEEEeCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTMY---LEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~~ 66 (170)
....+|.++|+-++|||+|+.-|..+..++...+ ..++.....++. ..+..+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3457899999999999999999987654332111 111122222221 24567789999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
||..|.......++.+|++++++|+...-++.. .+.+.... ....|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHHH
Confidence 999999999999999999999999987655433 22223322 2469999999999963
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-09 Score=77.79 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=58.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC----------------eEEEEEEEeCCCcc---
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE--- 69 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~--- 69 (170)
.+++-++|.|++|||||.|.++.........|+.+++...-...++. ....+.++|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998876545566665554333332211 12468899998822
Q ss_pred ----cccccchhhhcCCcEEEEEEeCC
Q 030880 70 ----RFRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 70 ----~~~~~~~~~~~~~~~~i~v~d~~ 92 (170)
.....-..-++++|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22223344478999999999986
No 320
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=5e-10 Score=80.19 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=80.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----- 73 (170)
..++++++|++|.|||||+|.|+....... ...+............++-..+++++||||....-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999988644322 112333334444444567778899999999332110
Q ss_pred --------------------cchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 74 --------------------LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 74 --------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
..+..+. .+|++++-+.++.. ++..+.- ..+... ...+++|-|+.|.|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l-~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKL-SKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHH-hccccccceeeccccCCHHH
Confidence 1111122 57888888887643 2222211 111111 24678888889999865433
Q ss_pred cC--HHHHHHHHhhcCCeEEE
Q 030880 132 VS--IEEGEAKSRELNVMFIE 150 (170)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~ 150 (170)
+. ...+.+.+...++.+|.
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~ 196 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFD 196 (366)
T ss_pred HHHHHHHHHHHHHHcCcceec
Confidence 21 23344444455554443
No 321
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.17 E-value=2e-10 Score=81.44 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred hhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 77 SYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+... ......+....+.+++.+|+++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 3478999999999999987 88888888876654 3589999999999965421 1222333455788999999999
Q ss_pred CCChHHHhhcCCC
Q 030880 156 GFNIKVCLMLHPN 168 (170)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (170)
+.|+++++..|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999998864
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=99.16 E-value=2.2e-10 Score=81.66 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=65.9
Q ss_pred hcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
..++|.+++|+|+.++.+... +.+|+..+.. .++|+++|+||+|+.+... ...+.....+..+++++.+|++++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 589999999999988866544 4677666543 4689999999999963321 1233445556678899999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|++++++.+...
T Consensus 154 gi~~L~~~l~gk 165 (298)
T PRK00098 154 GLDELKPLLAGK 165 (298)
T ss_pred cHHHHHhhccCc
Confidence 999999988653
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4e-10 Score=81.84 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=88.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc-C-----------CCCCc--------ccceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY-D-----------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~-~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
.+.-..+|+..|.+|||||-.+|+- + +.... -....++.+.+..+..+..+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456789999999999999998873 1 00000 00112233333334445556789999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN 145 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (170)
||+.|..-.-+.+..+|.+++|+|+... .+. ..++++.++ .++.||+-++||.|..... +.+...+..+.++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr---lR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~ 162 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR---LRDIPIFTFINKLDREGRD--PLELLDEIEEELG 162 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh---hcCCceEEEeeccccccCC--hHHHHHHHHHHhC
Confidence 9999998888889999999999998743 222 223333332 2579999999999974332 3455555666665
Q ss_pred Ce
Q 030880 146 VM 147 (170)
Q Consensus 146 ~~ 147 (170)
+.
T Consensus 163 i~ 164 (528)
T COG4108 163 IQ 164 (528)
T ss_pred cc
Confidence 53
No 324
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=3.8e-11 Score=89.13 Aligned_cols=156 Identities=21% Similarity=0.369 Sum_probs=119.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..+++|+-|+|..++|||+|+.+++.+.+.....+ .+ ..+.+++..++....+-+.|-+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EG-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCC-cC-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 35789999999999999999999998877655333 32 3445666677878888888888733 35667789999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCCChHH
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKV 161 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~ 161 (170)
|+||.+.+.++|+.+..+...+..+.. ..+|.++++++.-.. .++.+...++.+++..+ .+.+|++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999999888887765543 567888887765443 23445556666655544 57999999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
.|..+++
T Consensus 180 vf~~~~~ 186 (749)
T KOG0705|consen 180 VFQEVAQ 186 (749)
T ss_pred HHHHHHH
Confidence 9988764
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.13 E-value=4.2e-11 Score=81.87 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC----------CCcccce----------------eeeEEEEEEEEECC------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQAT----------------IGIDFLSKTMYLED------ 55 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~------ 55 (170)
+.+.|-+.|+||+|||||++.|..... .+...|. .....+.+...-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 457899999999999999998864200 0000010 01122222222211
Q ss_pred ------------eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880 56 ------------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 56 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (170)
.++.+.+++|.|-.+-. .....-+|.+++|..+.-.+..+.++.=+-++. =++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence 24688899998743322 223557999999999887666555554333331 2788899
Q ss_pred CCCCCccccCHHHHHHHH---hhc----CCeEEEEecCCCCChHHHhhcCC
Q 030880 124 TDLVEKRQVSIEEGEAKS---REL----NVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.|....... ..+.+... ... ..+++.+|+.++.|++++++.|.
T Consensus 177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~ 226 (266)
T PF03308_consen 177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAID 226 (266)
T ss_dssp -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 996433221 22222222 111 24899999999999999998764
No 326
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.9e-10 Score=79.92 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccee-eeEEEEEEEEE------CCeE----------------------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTMYL------EDRT---------------------- 57 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~---------------------- 57 (170)
..+.-|+++|+-+.||||||+.|+.+.++....-.. +.+.....+.. ++..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345669999999999999999999987764322111 11222221111 1111
Q ss_pred -----------EEEEEEeCCCc---------c--cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030880 58 -----------VRLQLWDTAGQ---------E--RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (170)
Q Consensus 58 -----------~~~~i~D~~g~---------~--~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 115 (170)
-.++++||||. + .|......+...+|.++++||+..-+--++.++.+..+. +..-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc
Confidence 26889999991 1 133456777889999999999865544444555444444 4456
Q ss_pred eEEEEEeCCCCCCccc
Q 030880 116 IIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 116 p~ivv~nK~D~~~~~~ 131 (170)
.+-||.||.|..+.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 7788899999876544
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.12 E-value=7e-11 Score=82.72 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=91.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc--ccc------chhhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSL------IPSYI 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~ 79 (170)
+..-|.++|-.++|||||+++|+.....+...-+.+.+........+... .+.+.||-|.-.- ..+ .....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 34568999999999999999999665544434344445444444444433 6788999983211 111 12225
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
..+|.++-|.|+++|+.-+.-...+..+...--+..| ++=|-||+|..+.. .. .+.++ .+.+|+++
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cc-------cccCC--cccccccc
Confidence 6899999999999996544433444444333212233 35556888863321 11 22233 57799999
Q ss_pred CCChHHHhhcC
Q 030880 156 GFNIKVCLMLH 166 (170)
Q Consensus 156 ~~~i~~~~~~l 166 (170)
|.|++++.+.+
T Consensus 326 gdgl~el~~a~ 336 (410)
T KOG0410|consen 326 GDGLEELLKAE 336 (410)
T ss_pred CccHHHHHHHH
Confidence 99999988754
No 328
>PRK12288 GTPase RsgA; Reviewed
Probab=99.12 E-value=4.7e-10 Score=81.24 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=67.6
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
..|+|.+++|++++...++..+.+|+..+.. .++|+++|+||+|+.+.... ...+.....+..+++++.+|++++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999875532 46899999999999654321 1222333345678899999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.12 E-value=1.6e-10 Score=77.25 Aligned_cols=91 Identities=24% Similarity=0.264 Sum_probs=63.0
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcC
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN 145 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 145 (170)
+..++..+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+.+.. ........+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 466778889999999999999876421 22222222 2468999999999986533 2233344443 2233
Q ss_pred C---eEEEEecCCCCChHHHhhcCCC
Q 030880 146 V---MFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 146 ~---~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
. .++.+|+++|.|+++++++|.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3 6899999999999999998764
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.1e-09 Score=73.96 Aligned_cols=142 Identities=13% Similarity=0.205 Sum_probs=78.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---cccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---RSLI 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~~ 75 (170)
-+++|+++|.+|.|||||+|.+......+. ...+.........+.-.+-..+++++||||...+ ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 368999999999999999999987544321 1112222233333334566778999999994331 1111
Q ss_pred -----------hhhh------------c--CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-
Q 030880 76 -----------PSYI------------R--DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128 (170)
Q Consensus 76 -----------~~~~------------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~- 128 (170)
..|+ . .++++++-+..+.. ++..+. ..+..+. .-+.++-|+.|.|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence 1111 1 46777777776643 332221 2222222 2356777779999642
Q ss_pred -ccccCHHHHHHHHhhcCCeEEEEecC
Q 030880 129 -KRQVSIEEGEAKSRELNVMFIETSAK 154 (170)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (170)
++..-.+.+++-....++.++.-.+.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~f 226 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSF 226 (336)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccc
Confidence 22222344444455566666555444
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=75.98 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=92.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC---C-------CCCc----ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD---K-------FDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
.+.+||..+|.-..|||||...+..- . +... .....+++.....+.+.-....+..+|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 45689999999999999998876531 0 0000 01123334444444444455678899999999998
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcCC--
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELNV-- 146 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~-- 146 (170)
..+..-..+.|+.|+|+++++..-- ..+. .+.-...-++| ++++.||+|+.+..+. -..+.+.+..+++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmP-qTrE---HiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMP-QTRE---HILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCC-cchh---hhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 8887778899999999999875221 1111 11111123576 5666799999864332 24556777777764
Q ss_pred ---eEEEEecCC
Q 030880 147 ---MFIETSAKA 155 (170)
Q Consensus 147 ---~~~~~s~~~ 155 (170)
+++.-|++.
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 566666553
No 332
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.04 E-value=1.1e-09 Score=76.08 Aligned_cols=101 Identities=17% Similarity=0.056 Sum_probs=63.0
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH-
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI- 134 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~- 134 (170)
-++.+.|++|.|-.+-. .....-+|.++++--..-.+..+..+.=+-++. =++|+||.|.......-.
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHH
Confidence 34688899998854322 233456888888887766666655555333332 278889999643321111
Q ss_pred -HHHHHHH----hhcC--CeEEEEecCCCCChHHHhhcCC
Q 030880 135 -EEGEAKS----RELN--VMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 135 -~~~~~~~----~~~~--~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
..+.... .+.+ -+++.+|+.+|+|++++++.+.
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHH
Confidence 1111111 1223 3899999999999999998764
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.04 E-value=2.5e-10 Score=73.95 Aligned_cols=90 Identities=22% Similarity=0.196 Sum_probs=60.4
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (170)
.+....++++|++++|+|++++...... .+...+ . ..+.|+++++||+|+.+.... .....+....+.+++.+|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~-~--~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV-L--ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH-H--hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence 4556677889999999999876432221 111111 1 236899999999998543211 112233344567899999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
++++.|++++++.+.+
T Consensus 78 a~~~~gi~~L~~~l~~ 93 (156)
T cd01859 78 AKERLGTKILRRTIKE 93 (156)
T ss_pred ccccccHHHHHHHHHH
Confidence 9999999999988754
No 334
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=2.5e-08 Score=67.99 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=75.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 80 (170)
..-||+++|-|++|||||+..+...........+++.++.+-.+...+ ..+++.|.||.-+- ........+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 467999999999999999999987665444445555666666665555 56899999983221 123344467
Q ss_pred CCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEE
Q 030880 81 DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIV 118 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~i 118 (170)
.+|.+++|.|++..+.-.. +...+..+........|-|
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pni 177 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNI 177 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCe
Confidence 8999999999997765543 5666666654443344433
No 335
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.6e-09 Score=77.54 Aligned_cols=158 Identities=16% Similarity=0.290 Sum_probs=97.3
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------------eeeeEEEEEEEEEC-----
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMYLE----- 54 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~----- 54 (170)
+.+...++|++++|...+|||||+..|..+...+..-. ..+++...+.+++.
T Consensus 161 d~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred CcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 34456689999999999999999998887543221110 11222222222211
Q ss_pred -----CeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 55 -----DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 55 -----~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
...-.++++|.+|+.+|.......+. ..|..+++++++..-.+ ..+..+..+. ..++|++++.+|+|+.
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~---AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIA---ALNIPFFVLVTKMDLV 316 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHH---HhCCCeEEEEEeeccc
Confidence 12235789999999999876655554 36778888887755332 1222222222 3579999999999997
Q ss_pred Cccc------------------------cCHHHHHHHHhhc---C-CeEEEEecCCCCChHHHhh
Q 030880 128 EKRQ------------------------VSIEEGEAKSREL---N-VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 128 ~~~~------------------------~~~~~~~~~~~~~---~-~~~~~~s~~~~~~i~~~~~ 164 (170)
++.. -+.+++..-+++. + .++|.+|+.+|+|++-+-.
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 5411 1122222222221 2 4899999999999876543
No 336
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.01 E-value=3.5e-09 Score=78.34 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=80.2
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
....+.++|++|+...+..|..++.+++++|+|+++++- ..+.+.-..+..+-.... .+.|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 446789999999999999999999999999999998731 334554555555544433 689999999999
Q ss_pred CCCCc----------------cc--cCHHHHHHHHhh------------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 125 DLVEK----------------RQ--VSIEEGEAKSRE------------LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 125 D~~~~----------------~~--~~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+..+ .. -..+.+..+... ..+.+..++|.+...+..+|+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~ 387 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD 387 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence 97421 11 234555555432 2235678999999999999987654
No 337
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.97 E-value=2.7e-10 Score=76.47 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=82.8
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
....+.+.|.+|+..-+..|..++++...++++..++ +.+.+++.+..+..+..+.+ .+.++|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3456789999999988899999999988887776554 45677778888888877776 788999999999
Q ss_pred CCCCc----------------cccCHHHHHHHHhhc----C------CeEEEEecCCCCChHHHhhcCCC
Q 030880 125 DLVEK----------------RQVSIEEGEAKSREL----N------VMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 125 D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+.++ .+.+.+.++++.... + +--..+.|.+.+||.-+|..+..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkD 346 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKD 346 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHH
Confidence 98632 223445556665433 1 12345778888999999876543
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=2.1e-09 Score=68.46 Aligned_cols=54 Identities=28% Similarity=0.349 Sum_probs=37.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
+++++|.+|+|||||+|++.+....... ...+.+........++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999987654221 1122233333344433 5799999994
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=2.3e-09 Score=78.32 Aligned_cols=93 Identities=28% Similarity=0.335 Sum_probs=68.1
Q ss_pred cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH----HHhh
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSRE 143 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 143 (170)
.+.|..+...+.+.++++++|+|+.+.. ..|..++.+.. .+.|+++|+||+|+.+.. ...+++.+ ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 4567777888888999999999987653 22444544443 367999999999996532 33344443 3556
Q ss_pred cCC---eEEEEecCCCCChHHHhhcCC
Q 030880 144 LNV---MFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 144 ~~~---~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.++ .++.+||++|.|++++|+.|.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 676 489999999999999999875
No 340
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.4e-09 Score=71.65 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=90.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc---chhhhcCCcEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA 85 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~~~~ 85 (170)
+.+|+++|...+|||++-....++..+.+.-.... +.....-.+.+.-+.+.+||.|||..+-.- ....++++.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflES-Tski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeec-cCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 35699999999999998877776654433211111 111111223345578999999998765432 24557899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCcc-ccC----------HHHHHHHHhhcCCeEEEEe
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKR-QVS----------IEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~~~----------~~~~~~~~~~~~~~~~~~s 152 (170)
++|+|+.+. -.+.+.++...+.+.. .+++.+=|.+.|.|-.... .+. .+.+........+.|+.+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999997644 2222333333333322 2677888889999965321 111 1111222223345777777
Q ss_pred cCCCCChHHHhhcCC
Q 030880 153 AKAGFNIKVCLMLHP 167 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~ 167 (170)
.. .-.+-|.|..+.
T Consensus 185 Iy-DHSIfEAFSkvV 198 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVV 198 (347)
T ss_pred ec-chHHHHHHHHHH
Confidence 65 445556555443
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.89 E-value=8.3e-09 Score=66.93 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=36.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
..++++++|.+|+|||||+|+|.+...... ..+..+ .....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999998654322 122222 2222222222 378999998
No 342
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.89 E-value=2.3e-08 Score=71.96 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=93.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccce--------------eeeEEEEEEEEECC----------------
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLED---------------- 55 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---------------- 55 (170)
....+.+...|.-..|||||+..|..+...+..-.+ .+.+..-.....++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 455688999999999999999988766443321110 01111111111111
Q ss_pred -----eEEEEEEEeCCCcccccccchhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 56 -----RTVRLQLWDTAGQERFRSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 56 -----~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
..--+.++|+.|++.|-+....-+ .+.|..++++.+++.-+- ..+..+-. ....+.|++++.+|+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi---~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGI---ALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhh---hhhhcCCEEEEEEecccCc
Confidence 113578999999998865443332 578999999998865331 12222222 2234699999999999975
Q ss_pred ccccC--HHHHHHHH----------------------hhcC---CeEEEEecCCCCChH---HHhhcCC
Q 030880 129 KRQVS--IEEGEAKS----------------------RELN---VMFIETSAKAGFNIK---VCLMLHP 167 (170)
Q Consensus 129 ~~~~~--~~~~~~~~----------------------~~~~---~~~~~~s~~~~~~i~---~~~~~l~ 167 (170)
...+. .+++.... -..+ ++++.+|+.+|+|++ ++|..|.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp 338 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP 338 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence 42111 11111111 1111 489999999999976 4555544
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.89 E-value=3.5e-09 Score=72.86 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=89.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-eeeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 75 (170)
....+++++|.+++|||+|++-+...+....... ..+.+ ..+...+-+-.+.++|.||- ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999887654332222 22222 22223334457899999991 1233344
Q ss_pred hhhhcC---CcEEEEEEeCCCh-hhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------c-----CHHHHHH
Q 030880 76 PSYIRD---SSVAVVVYDVASR-QSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------V-----SIEEGEA 139 (170)
Q Consensus 76 ~~~~~~---~~~~i~v~d~~~~-~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~-----~~~~~~~ 139 (170)
..|+.+ ---+.++.|++-+ +..+ ....|+.+ .++|..+|.||||...... . .....-+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 555433 2234455565533 1111 12333333 4799999999999742211 1 1111222
Q ss_pred HHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 140 KSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 140 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.......+++.+|+.++.|++++.-.+++
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 22223347889999999999998776654
No 344
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.4e-08 Score=78.25 Aligned_cols=118 Identities=24% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CCc--ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.++....--+++++..-..|||||+..|+.... .+. ...+.+++.....+..-...+.++++|+||
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 345556667899999999999999999986422 111 112223333333333445678999999999
Q ss_pred cccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 126 (170)
|-.|.+......+-+|++++++|+... +++.-+++- -..+...++|+||+|.
T Consensus 82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~-------~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQA-------WIEGLKPILVINKIDR 136 (887)
T ss_pred ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHH-------HHccCceEEEEehhhh
Confidence 999999999999999999999998754 343333221 1134556888999993
No 345
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-07 Score=72.50 Aligned_cols=145 Identities=22% Similarity=0.280 Sum_probs=84.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEE---------------------------------------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS--------------------------------------- 48 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 48 (170)
...||++.|..+.||||++|+++..+..+...-.++..+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 45799999999999999999998765433322111100000
Q ss_pred ----EEEEECCe-----EEEEEEEeCCCcc---cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe
Q 030880 49 ----KTMYLEDR-----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI 116 (170)
Q Consensus 49 ----~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 116 (170)
..+.++.+ .-.+.++|.||-+ +..+-...+...+|++|+|.++.+.-+..+. .++..... .+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 00011111 0146688999844 3444556667899999999998766544332 23333322 2345
Q ss_pred EEEEEeCCCCCCccccCHHHHHHHHhhcCC--------eEEEEecCCC
Q 030880 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNV--------MFIETSAKAG 156 (170)
Q Consensus 117 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~ 156 (170)
+.|+.||.|.......-.+++....+++.. .++.||++.-
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 677778999865433333444444444432 4688886644
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=1.6e-08 Score=66.49 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=37.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.++++++|.+++|||||+|++.+...... ..|..+... ...... ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeC---CCEEEEECcC
Confidence 47999999999999999999998655322 223333222 222222 2588999998
No 347
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.80 E-value=1.5e-08 Score=69.33 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 125 (170)
.++++.+|.+|+...+..|.+++....++|+|..++.- +.+.+.-.++..+.+..+ ....+|+..||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 35799999999999999999999999999999988731 233443344444444443 5678999999999
Q ss_pred CC
Q 030880 126 LV 127 (170)
Q Consensus 126 ~~ 127 (170)
+.
T Consensus 281 ll 282 (379)
T KOG0099|consen 281 LL 282 (379)
T ss_pred HH
Confidence 85
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.9e-08 Score=64.39 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=55.6
Q ss_pred hhcCCcEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 78 YIRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
.++++|.+++|.|+.++.. ...+.+++. ....++|+++|+||+|+.++... ......+.+.+....+.+|++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~----~~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK----KEKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH----hccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 3779999999999988732 222333322 22345899999999999644321 1222333333333457899999
Q ss_pred CCChHHHhhcCC
Q 030880 156 GFNIKVCLMLHP 167 (170)
Q Consensus 156 ~~~i~~~~~~l~ 167 (170)
+.|++++.+.+.
T Consensus 80 ~~~~~~L~~~l~ 91 (157)
T cd01858 80 PFGKGSLIQLLR 91 (157)
T ss_pred cccHHHHHHHHH
Confidence 999999888774
No 349
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1e-07 Score=65.02 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=96.5
Q ss_pred eeEEEEcCCCC--CHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC--eEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 10 YKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 10 ~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..++++|.+|+ ||.+|+.+|....+.+...+.....++.+++...- ..+.+.+.-.. +++.-.......-..++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeE
Confidence 46789999998 99999999998888766665555566666543221 12233332221 11211122223445678
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCc-----------------------------------
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEK----------------------------------- 129 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~----------------------------------- 129 (170)
+++||.+...++..++.|+....... .-+ +-++||.|..+.
T Consensus 83 vmvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 99999999999999999987653322 222 344799986421
Q ss_pred ---------cccCHHHHHHHHhhcCCeEEEEecCCC------------CChHHHhhcC
Q 030880 130 ---------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKVCLMLH 166 (170)
Q Consensus 130 ---------~~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l 166 (170)
.-.....+.+|+.+.|+.+++.++.+- +|+..+|..|
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal 217 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGAL 217 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHh
Confidence 002234567888999999999888432 3676766554
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.77 E-value=3.2e-08 Score=65.11 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=37.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..++++++|.+++|||||++++.+...... .+..+.+........+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 347899999999999999999998765322 1111222222223332 35789999994
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.1e-07 Score=71.71 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=83.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
..++++=++++||||+||||||+.|........ .. +.........+...++++..+|. .... .....+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECPS--DLHQ-MIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeChH--HHHH-HHhHHHhhhe
Confidence 345678889999999999999998875432111 10 11122223456777999999993 2222 3344677999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccCHHHHHH-----HHhh-cCCeEEEEecCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEA-----KSRE-LNVMFIETSAKA 155 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~-----~~~~-~~~~~~~~s~~~ 155 (170)
+++++|.+-.--++ ...+++.+..+ +.| ++-|++..|+.....-....-++ |-.- .|+++|.+|...
T Consensus 137 VlLlIdgnfGfEME-TmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEME-TMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceeh-HHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987542221 33445555444 345 55567999996543222222222 2221 267888888764
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.76 E-value=2e-07 Score=66.98 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=78.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC----------ccc-----------ceeeeEEEEEEEE-------------EC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN----------TYQ-----------ATIGIDFLSKTMY-------------LE 54 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~~ 54 (170)
.--++++|++|+||||++..+....... .+. .-.+......... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999886521110 000 0001111110000 01
Q ss_pred CeEEEEEEEeCCCccccccc----chhh--------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030880 55 DRTVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN 122 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 122 (170)
...+.+.++||||....... .... -...+..++|.|++... +.+.+ ...+.... .+.-++.|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEE
Confidence 23468999999996532221 1111 12467789999988542 22222 12222211 23367779
Q ss_pred CCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
|.|..... ..+...+...+.++..++ +|++++++
T Consensus 268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99964332 345555667788888887 78888654
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=3.7e-08 Score=63.74 Aligned_cols=82 Identities=20% Similarity=0.094 Sum_probs=53.5
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
|.+++|+|+.++.+.... ++.. ......++|+++|+||+|+.+...+ ......+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654432 2221 1122256899999999998543211 11112233334567899999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
++.+.+
T Consensus 77 ~~~i~~ 82 (155)
T cd01849 77 ESAFTK 82 (155)
T ss_pred HHHHHH
Confidence 987643
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=2e-08 Score=67.20 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=35.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
..+++++|.+|+|||||+|.|.+... .....|.++ .......... .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence 46899999999999999999997542 112223322 2223333332 578999998
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.74 E-value=5.3e-08 Score=63.05 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
...+++++|.+++|||||++++.++... ...++.+.+........+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976532 2233333332222222222 689999998
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.74 E-value=1.8e-08 Score=66.26 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=57.6
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (170)
......++++|.+++|+|++++...... ..... . .+.|+++++||+|+.++... ....++.+..+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----L-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----h-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3445668899999999999876432221 11111 1 34789999999998543211 112122233345789999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
++++.|++++.+.+.+
T Consensus 83 a~~~~gi~~L~~~l~~ 98 (171)
T cd01856 83 AKSGKGVKKLLKAAKK 98 (171)
T ss_pred CCCcccHHHHHHHHHH
Confidence 9999999999887653
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=7.1e-08 Score=61.44 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred hhhhcCCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880 76 PSYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (170)
...++++|++++|+|+.++.+.. .+..++... ..++|+++++||+|+.++.. ..+..+..+..+..++.+|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34578999999999998876543 234444332 14689999999999864432 23344555566788999999
Q ss_pred CCCCC
Q 030880 154 KAGFN 158 (170)
Q Consensus 154 ~~~~~ 158 (170)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98864
No 358
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.71 E-value=7.8e-08 Score=69.86 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER--- 70 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 70 (170)
+++.++|.|++|||||++.|+.... .....|+++.+.....+.+++. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4443455544444444444332 23678999999433
Q ss_pred ----ccccchhhhcCCcEEEEEEeCC
Q 030880 71 ----FRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 71 ----~~~~~~~~~~~~~~~i~v~d~~ 92 (170)
........++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223344578999999999984
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=98.71 E-value=2.1e-07 Score=67.23 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCccccccc-c---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSL-I---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
++.+.++||+|....... . ... ..+.|.+++|.|+...+...+ ....+.... +. --++.||.|.....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~--~~-~giIlTKlD~~~~~ 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV--GI-DGVILTKVDADAKG 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC--CC-CEEEEeeecCCCCc
Confidence 356999999996542221 1 111 225788999999876532211 112222111 12 35667999985433
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
-.+...+...+.++..++ +|++++++..
T Consensus 296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred ----cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 234445556678777776 7999876543
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=6.5e-08 Score=68.41 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=38.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..++++++|.+|+|||||+|+|.+...... ..|..+.. ...+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 458999999999999999999997654322 22322222 22333322 5789999996
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.70 E-value=2.1e-08 Score=64.66 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=33.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
-.++++|++|+|||||+|.|......... ......+.....+..+.. -.++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 45789999999999999999986332111 111111222223333332 368999996654
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.70 E-value=2.5e-07 Score=65.18 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=56.4
Q ss_pred eEEEEEEEeCCCcccccccchh-------hh-----cCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030880 56 RTVRLQLWDTAGQERFRSLIPS-------YI-----RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGN 122 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~n 122 (170)
.++.+.++||||.......... .. ..+|..++|.|++.. +.+... ..+.+.. -+.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence 3468999999996543322111 11 138999999999754 223222 2322222 13466779
Q ss_pred CCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
|.|..... ..+.......+.++..++ +|++++++-
T Consensus 226 KlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 99975433 334455556678777777 788876653
No 363
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=8.8e-08 Score=68.11 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++++++|.+++|||||+|+|.+..... ...|..+... ..+..+. .+.++||||--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999876422 2233333232 2233332 57899999953
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=6e-08 Score=68.66 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER- 70 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~- 70 (170)
...+++-++|.|++|||||+|.|+.........|+.+++.....+.+.. ....++++|++|--.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3567999999999999999999999888777788888777666665543 234789999988221
Q ss_pred ------ccccchhhhcCCcEEEEEEeCC
Q 030880 71 ------FRSLIPSYIRDSSVAVVVYDVA 92 (170)
Q Consensus 71 ------~~~~~~~~~~~~~~~i~v~d~~ 92 (170)
....-..-++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2222334478899998888765
No 365
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4e-09 Score=73.63 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=75.4
Q ss_pred EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHH
Q 030880 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEE 136 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 136 (170)
.+.+.|+||++-....+..-..-.|++++++..+.+..-....+.+..+.... =..++++-||+|+..+.+. ..++
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 57899999999877666666666788888887764322222223333332221 1557888999999765432 2455
Q ss_pred HHHHHhhc---CCeEEEEecCCCCChHHHhhcCCCCC
Q 030880 137 GEAKSREL---NVMFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 137 ~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
+..|.+.- +++++++||.-+.|++-+.++|.+.|
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 66666544 56999999999999999999987654
No 366
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=4.4e-08 Score=71.33 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=87.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD--------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
--+|-++..-.+||||.-.++++- ...+. ...-.+++....-++.+=+++++.++||||+..|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 357899999999999999998752 11111 01123455666666667777899999999999999
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
-...++++-.|+++.|||.+..-.-+.+..|.. ....++|-..++||+|...+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh
Confidence 999999999999999999986644445555633 333568888889999986543
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=1.1e-07 Score=61.48 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
....+++++|.+++|||||+|.+.+..... ...+.++..... .... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 346789999999999999999999865322 222333323222 2222 3588999998
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=1.2e-07 Score=68.87 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc-cce-----eeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTY-QAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
++++|.+|+|||||+|+|++....... .+. ..++.....+..++.. .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999976432211 110 0112222223333322 499999976643
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=1.5e-06 Score=59.59 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=51.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC--CCCCccc-ceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------cchhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPSY 78 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~~~ 78 (170)
..-|.++|++++|||+|+|+|++. .+..... ...+.....+..... +....+.++||+|...... .....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 356889999999999999999987 4432211 122223333222221 2346899999999554322 12222
Q ss_pred hcC--CcEEEEEEeCCCh
Q 030880 79 IRD--SSVAVVVYDVASR 94 (170)
Q Consensus 79 ~~~--~~~~i~v~d~~~~ 94 (170)
+.. ++.+|+..+....
T Consensus 87 l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 87 LATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHhCEEEEeccCccc
Confidence 333 7777777665543
No 370
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.57 E-value=1.3e-06 Score=65.96 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=55.6
Q ss_pred EEEEEeCCC-------------cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH-HhcCCCCeEEEEEeCC
Q 030880 59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR-TERGSDVIIVLVGNKT 124 (170)
Q Consensus 59 ~~~i~D~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~ 124 (170)
+..++|.|| .+..-.+...|+.+.+++|+|+--. |.+.-+.....+- +..+.+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 678999999 1222346678899999999998422 2222222333332 3334677889999999
Q ss_pred CCCCccccCHHHHHHHHh
Q 030880 125 DLVEKRQVSIEEGEAKSR 142 (170)
Q Consensus 125 D~~~~~~~~~~~~~~~~~ 142 (170)
|+.+....+++.+++...
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 999888888888887765
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.56 E-value=4e-07 Score=66.61 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=58.5
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
..++|.+++|.++..+-....+.+++..+.. .+++.+||+||+|+.+......+....+ ..+++++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 5789999999999744444455565555443 3577788999999965411011122222 4578999999999999
Q ss_pred hHHHhhcCC
Q 030880 159 IKVCLMLHP 167 (170)
Q Consensus 159 i~~~~~~l~ 167 (170)
++++..+|.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999998875
No 372
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=67.06 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=39.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
...++.++|-|++|||||||+|.+...... .+..+.+.....+.... .+.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCc
Confidence 457899999999999999999999776322 22223343333344444 3889999993
No 373
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=66.00 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=36.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 72 (170)
-.+++|++|+|||||+|+|..... .........++.....+..++.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578899999999999999987322 11111222223334444454333 389999976543
No 374
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.55 E-value=5.2e-07 Score=75.12 Aligned_cols=112 Identities=22% Similarity=0.236 Sum_probs=69.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc----cce--eeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchh
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPS 77 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 77 (170)
.+++|++|+||||++..- +-.++-.. ..+ .+.+.. ......+ +-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999876 22222110 000 000000 0011122 35599999922 12234554
Q ss_pred hhc---------CCcEEEEEEeCCCh-----h----hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 78 YIR---------DSSVAVVVYDVASR-----Q----SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 78 ~~~---------~~~~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
++. -.|++|+++|+.+- + .-..++..+.++....+...|+-|+.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 432 48999999998732 1 123467777888888888999999999999864
No 375
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=4e-07 Score=63.05 Aligned_cols=59 Identities=15% Similarity=0.409 Sum_probs=43.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccce----eeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT----IGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.++|+-+|..|.|||||+..|.+-.+.....+. ...........-.+-..++++.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 589999999999999999999998775543332 22233333334456778999999998
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.53 E-value=2e-07 Score=65.98 Aligned_cols=86 Identities=23% Similarity=0.198 Sum_probs=57.0
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (170)
.....++++|++++|.|+..+.+.+.. ++.... .+.|+++|.||+|+.++... ....+..+..+..++.+|+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEEC
Confidence 345568899999999999876443221 111111 25799999999998543211 1122222334668899999
Q ss_pred CCCCChHHHhhcCC
Q 030880 154 KAGFNIKVCLMLHP 167 (170)
Q Consensus 154 ~~~~~i~~~~~~l~ 167 (170)
+++.|++++.+.+.
T Consensus 86 ~~~~gi~~L~~~i~ 99 (276)
T TIGR03596 86 KKGKGVKKIIKAAK 99 (276)
T ss_pred CCcccHHHHHHHHH
Confidence 99999999877664
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.51 E-value=8.6e-07 Score=57.55 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCcccccccchh--------hhcCCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPS--------YIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 126 (170)
.....++|++|-.+....... ..-..+.++.++|+.+-.... ....+..++.... +|+.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 356789999996543322221 233588899999976543321 2223333443222 778899995
No 378
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.5e-07 Score=63.69 Aligned_cols=146 Identities=19% Similarity=0.173 Sum_probs=91.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc---C-------CCCCc----ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMY---D-------KFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~---~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
+.+.+||--+|.-..|||||-.++.. . ++... .....+++.....+.+......+.=.|+||+..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34568999999999999999876653 1 11000 0112333343444444444456677899999998
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC--
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-- 145 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 145 (170)
-..+..-..+.|+.|+|+.+++..-- ..++.+.-.++ -+++ +++.+||.|+.+..+ +-.-+++++..++|
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQ---VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQ---VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHH---cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88777778899999999999986322 22222222222 2344 677789999984432 22345667777776
Q ss_pred ---CeEEEEecCC
Q 030880 146 ---VMFIETSAKA 155 (170)
Q Consensus 146 ---~~~~~~s~~~ 155 (170)
++++.-||+.
T Consensus 207 Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 207 GDNTPVIRGSALC 219 (449)
T ss_pred CCCCCeeecchhh
Confidence 3677666543
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=98.50 E-value=2.9e-07 Score=66.99 Aligned_cols=57 Identities=25% Similarity=0.179 Sum_probs=34.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-cce-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
.++++|++|+|||||+|.|+........ .+. ..++.....+..++.. .++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 3799999999999999999975432211 111 0012222333333332 6999999554
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=4.6e-07 Score=66.53 Aligned_cols=83 Identities=29% Similarity=0.367 Sum_probs=57.0
Q ss_pred hcCCc-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----HhhcCC---eEEE
Q 030880 79 IRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SRELNV---MFIE 150 (170)
Q Consensus 79 ~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~---~~~~ 150 (170)
+...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.+. ....+++..+ ++..++ .++.
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 44455 889999987643 22444554443 36789999999999643 2333344333 455565 6899
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+|++++.|++++++.|.+
T Consensus 139 vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEK 156 (365)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998743
No 381
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.47 E-value=7.3e-07 Score=64.36 Aligned_cols=157 Identities=15% Similarity=0.199 Sum_probs=89.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccce-----eeeEEEEE------------
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQAT-----IGIDFLSK------------ 49 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~-----~~~~~~~~------------ 49 (170)
.+..+.+|+++|...+|||||+..|..+...+. ..+. .+++....
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 455689999999999999999988876533211 0111 11111111
Q ss_pred --EEEECCeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880 50 --TMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 50 --~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 125 (170)
.-.+.+..--++|+|.+|+++|......-+. -.|...+++-++-. ..-..++.+-... ...+|+.+|.+|+|
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL---aL~VPVfvVVTKID 284 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL---ALHVPVFVVVTKID 284 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh---hhcCcEEEEEEeec
Confidence 1112233346789999999998765443332 34666666655422 1111222222211 24689999999999
Q ss_pred CCCccccC--HHHHHHHH--------------------------hhcCCeEEEEecCCCCChHHHhhc
Q 030880 126 LVEKRQVS--IEEGEAKS--------------------------RELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 126 ~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+.+++... ...+.++. .+.=|++|++|..+|.|++-+...
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 87654221 11111111 122357899999999998866543
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.46 E-value=2.4e-06 Score=60.25 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=68.8
Q ss_pred cchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (170)
+.+.-..+.|-.++++.+.+|+ +...+.+++-.... .++..+||.||+|+.+.......+........|++.+.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 3344455788888899888885 45556665555433 3566788899999986654433456677788999999999
Q ss_pred cCCCCChHHHhhcCCCC
Q 030880 153 AKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~~ 169 (170)
++++.|++++.+.+...
T Consensus 149 ~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 149 AKNGDGLEELAELLAGK 165 (301)
T ss_pred CcCcccHHHHHHHhcCC
Confidence 99999999999988654
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.45 E-value=1.8e-05 Score=50.67 Aligned_cols=112 Identities=15% Similarity=0.266 Sum_probs=63.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCC-Cccc--------------cc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------FR 72 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~~ 72 (170)
..+||.+.|+||+||||++.++........+ . . -.+....+.-.+...-|.+.|.. |... |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-k-v-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-K-V-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-e-e-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988754322211 1 1 13444555556677777888876 3111 10
Q ss_pred -----------ccchhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880 73 -----------SLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 73 -----------~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~ 126 (170)
......++.+|++| +|=-.+ ++. ...+...+......+.|++....+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 01122234556554 342222 222 334445555555567887777776653
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=5.5e-07 Score=62.60 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|++|+|||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468899999999999999999754
No 385
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.39 E-value=2.4e-05 Score=57.70 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-----------------CCc----ccceeeeEEEE---EEEEE-CCeEEEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------------DNT----YQATIGIDFLS---KTMYL-EDRTVRLQL 62 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~----~~~~~~~~~~~---~~~~~-~~~~~~~~i 62 (170)
..+-+-++||..+||||||.+|..-.. +.+ ...|+...+.. ..+.. ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 357789999999999999999975211 111 11112111211 12233 466789999
Q ss_pred EeCCCc--------c-----cc-cccchhh---------------h--cCCcEEEEEEeCC----ChhhHHhH-HHHHHH
Q 030880 63 WDTAGQ--------E-----RF-RSLIPSY---------------I--RDSSVAVVVYDVA----SRQSFLNT-SKWIDE 106 (170)
Q Consensus 63 ~D~~g~--------~-----~~-~~~~~~~---------------~--~~~~~~i~v~d~~----~~~s~~~~-~~~~~~ 106 (170)
+|+.|. . ++ .+-|-.+ + +..=++++.-|-+ .++.|.+. .+...+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999871 1 00 0011000 1 1234566666644 23455444 333344
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC--CCChHHHhhc
Q 030880 107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKVCLML 165 (170)
Q Consensus 107 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~ 165 (170)
+. ..++|++++.|-.+-. .....+.+.++...++++++.+++.. ...+..+++.
T Consensus 176 Lk---~igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 176 LK---EIGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HH---HhCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 43 3569999999998853 33355677888889999888777654 3455555443
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=8e-06 Score=59.84 Aligned_cols=140 Identities=12% Similarity=0.090 Sum_probs=69.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEE---------------EEE-EE-----------CCeEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLS---------------KTM-YL-----------EDRTV 58 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~---------------~~~-~~-----------~~~~~ 58 (170)
.-.++++|++|+||||++.+|....... ......+.+.+. ..+ .. .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468899999999999999987532110 011111111110 000 00 01235
Q ss_pred EEEEEeCCCcccccccchh---hhc---CCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCc
Q 030880 59 RLQLWDTAGQERFRSLIPS---YIR---DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK 129 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~---~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 129 (170)
.+.++||+|....+..... .+. ...-.++|.+++.. +...+....+......... .-+-=++.||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 7899999996544332211 122 23456888888754 3444433323332211100 0122455699997543
Q ss_pred cccCHHHHHHHHhhcCCeEEEEe
Q 030880 130 RQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s 152 (170)
.-.+..++...+.++..++
T Consensus 297 ----~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 297 ----LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----ccHHHHHHHHHCcCeEEEe
Confidence 2345555555565544443
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.36 E-value=4.9e-06 Score=61.90 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=72.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC------CC----CCcccc-----------eeeeEEEEEEEEE-------------C
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD------KF----DNTYQA-----------TIGIDFLSKTMYL-------------E 54 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~-------------~ 54 (170)
+.-|+++|++|+||||++.+|... +. .+.+.+ -...+++...... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 456899999999999999988631 10 011100 0111111110000 0
Q ss_pred CeEEEEEEEeCCCcccccccchhh------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
...+.+.|+||+|........... ..+.+-+++|.|+...+.-.+ ....+.... .+.-++.||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~~---~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDSV---DVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhcc---CCcEEEEECccCCC
Confidence 125689999999955433211111 225678999999875532222 222222211 34567789999743
Q ss_pred ccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
.. -.+.......+.++..++ +|+.+++
T Consensus 254 rg----G~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 254 KG----GGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred Cc----cHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 22 223444445555544443 3444444
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.34 E-value=1.3e-06 Score=62.17 Aligned_cols=95 Identities=22% Similarity=0.176 Sum_probs=60.6
Q ss_pred CCCcccc-cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh
Q 030880 65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (170)
Q Consensus 65 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (170)
.|||..- .......++.+|++++|+|+..+.+.+. .++.... .+.|+++|.||+|+.+... ......+.++
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 4565421 2234555789999999999987644322 1122221 2588999999999854311 1122222234
Q ss_pred cCCeEEEEecCCCCChHHHhhcCC
Q 030880 144 LNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 144 ~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.+..++.+|++++.|++++.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~ 102 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAK 102 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 467889999999999999887654
No 389
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.34 E-value=4e-06 Score=57.71 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccchhhhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 81 (170)
.-+|-++|-|++||||++..+.+...+.....+++.....- ...-.+-++++.|.||.-+ .........+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG--~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG--VIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc--eEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 34889999999999999999987654322111111111111 1122345899999998322 11233444678
Q ss_pred CcEEEEEEeCCCh
Q 030880 82 SSVAVVVYDVASR 94 (170)
Q Consensus 82 ~~~~i~v~d~~~~ 94 (170)
|+.+++|.|+..|
T Consensus 137 cnli~~vld~~kp 149 (358)
T KOG1487|consen 137 CNLIFIVLDVLKP 149 (358)
T ss_pred ccEEEEEeeccCc
Confidence 9999999998754
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.33 E-value=3.5e-06 Score=55.17 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=67.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeC-CCccc-------------------
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQER------------------- 70 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~~------------------- 70 (170)
||++.|++|+|||||+.+++...... ..+.. .+++......+...-+.+.|. .|.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988543211 11222 233333334455555666666 33110
Q ss_pred ---cccc----chhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCC-CCCCccccCHHHHHHHH
Q 030880 71 ---FRSL----IPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT-DLVEKRQVSIEEGEAKS 141 (170)
Q Consensus 71 ---~~~~----~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~ 141 (170)
+... ....+..++ ++++|=-.+ ++. ...|.+.+......++|++.+.-+. +. ...+.+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 1111 111123445 566662222 111 2344555555555678888777666 32 2356667
Q ss_pred hhcCCeEEEEecCCCCCh
Q 030880 142 RELNVMFIETSAKAGFNI 159 (170)
Q Consensus 142 ~~~~~~~~~~s~~~~~~i 159 (170)
...++.++.++..+...+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 777888898887766554
No 391
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.32 E-value=1.8e-06 Score=63.41 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
.++.++|.+|+|||||+|+++.... .....|.++... ......+ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999997432 111223333222 2222222 35799999954
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=98.32 E-value=2e-06 Score=61.52 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-.++++|++|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4588999999999999999997654
No 393
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1e-06 Score=64.02 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------CC------------cccceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------DN------------TYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------~~------------~~~~~~~~~~~~~~~~~~ 54 (170)
+...++++++|.-..||||+-..++.... .. +....-+...... ...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA--~FE 153 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA--YFE 153 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE--EEE
Confidence 45578999999999999998776653100 00 0000011111111 112
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCc-
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEK- 129 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~- 129 (170)
-...++++.|+||+..|-.....-..++|.-++|.++-.. ..|+.-.+......-.. ..-...|+++||+|-..-
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 2335799999999999988888888899999999987432 34555322222222222 233457888899996421
Q ss_pred -cccC----HHHHHHHHhhcC------CeEEEEecCCCCChHHHhh
Q 030880 130 -RQVS----IEEGEAKSRELN------VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 130 -~~~~----~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 164 (170)
..-- .+....+.+.+| ..|+.+|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111 233334444333 4799999999999987543
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.31 E-value=2e-06 Score=61.26 Aligned_cols=59 Identities=24% Similarity=0.218 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccce------eeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT------IGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
-.++++|++|+|||||+|.|.+.......... ...+.........+. ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 56899999999999999999976443221110 011222222333322 258999997654
No 395
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=1.5e-06 Score=63.93 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
.++.++|.+|+|||||+|+|+..... ....|.++.+. ..+..++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCc
Confidence 47999999999999999999864311 11222222222 22223222 479999995
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.28 E-value=3.4e-05 Score=55.62 Aligned_cols=97 Identities=29% Similarity=0.291 Sum_probs=53.7
Q ss_pred EEEEEEeCCCcccccccchhhh--------cCCcEEEEEEeCCChhhHHh-HHHH-HHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 58 VRLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQSFLN-TSKW-IDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
....++.+.|.-.-......+. -..|++|-|+|+.+-..... .... ..++. .. =+|++||+|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~A-----D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-FA-----DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-hC-----cEEEEecccCC
Confidence 4566788887443322222221 24688999999875432221 2222 22222 22 17888999998
Q ss_pred CccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHh
Q 030880 128 EKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~ 163 (170)
++.. .+..+...+.++ ++++.++. .+.+..+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7764 344555555554 57777776 444444444
No 397
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=3.3e-06 Score=64.28 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=77.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-------c---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-------T---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
-+|-+.-.-.+||||+-++.+...... . .....+++....-....-..++++++|||||-.|.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 467778888999999999887531100 0 001112222222222222367899999999999988
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
...+.++-.|++|++.|....-.-+....| .++.+ .++|.+..+||+|...+..
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRMGASP 173 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhcCCCh
Confidence 888899999999999997755222223333 22222 4699999999999876643
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.26 E-value=9.1e-06 Score=53.53 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=44.6
Q ss_pred EEEEEEEeCCCcccccccc----hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
...+.++|++|...+.... ..+ ....+.+++|+|...... ...+...+.+... ..-++.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 4568899999964322111 111 134899999999865432 2233344433322 245666999975432
Q ss_pred ccCHHHHHHHHhhcCCeE
Q 030880 131 QVSIEEGEAKSRELNVMF 148 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ 148 (170)
..+...+...++++
T Consensus 156 ----g~~~~~~~~~~~p~ 169 (173)
T cd03115 156 ----GAALSIRAVTGKPI 169 (173)
T ss_pred ----chhhhhHHHHCcCe
Confidence 22233555555544
No 399
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.24 E-value=3.8e-05 Score=55.43 Aligned_cols=95 Identities=9% Similarity=0.119 Sum_probs=49.9
Q ss_pred EEEEEEeCCCcccccccchhhhc--------CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
....++++.|-.........++. ..++++.|+|+.+-.... .......++.... +|++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence 45678888885544333333221 357899999987542221 1111122232222 77889999876
Q ss_pred ccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHh
Q 030880 129 KRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~ 163 (170)
+. +......+..+ ++++.++ ........+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 42 44555555443 4555443 2233444443
No 400
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.24 E-value=7.7e-06 Score=42.97 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=31.7
Q ss_pred cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880 80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 125 (170)
.-.+++++++|++.. .+.++....+.+++..+ .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 346789999999965 56777888888888887 5899999999998
No 401
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.24 E-value=9.8e-06 Score=51.46 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=62.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC
Q 030880 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS 93 (170)
Q Consensus 14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 93 (170)
.-|.+|+|||++.-.+...... ......-.+... ....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 4478999999997765432111 111111111110 001111689999999743 344456789999999999976
Q ss_pred hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
..++..+...++.+.... ...++.++.|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 455555555555554432 345677889999743
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.23 E-value=1.9e-05 Score=53.07 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=49.3
Q ss_pred EEEEEEeCCCcccccccc----hhh--hcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 58 VRLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
+.+.++||+|........ ..+ ....+-+++|.+++.... .+..... .... +.. =++.||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~--~~~-~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAF--GID-GLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHS--STC-EEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcc--cCc-eEEEEeecCCCC-
Confidence 569999999955443221 111 125778899999876532 3222222 2222 122 345799997543
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
.-.+..++...+.++-.++ +|+++
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEE--SSSST
T ss_pred ---cccceeHHHHhCCCeEEEE--CCCCh
Confidence 2446666777777665554 35554
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.23 E-value=2.2e-06 Score=64.07 Aligned_cols=142 Identities=17% Similarity=0.150 Sum_probs=74.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC----------CCcccce-----------eeeEEEEEEEEE-----------CC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQAT-----------IGIDFLSKTMYL-----------ED 55 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~~~-----------~~~~~~~~~~~~-----------~~ 55 (170)
.+..++++|++|+||||++..|..... .+.+.+. .+.......... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 457899999999999999987753110 0111110 011111100000 00
Q ss_pred eEEEEEEEeCCCcccccccc------hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 56 RTVRLQLWDTAGQERFRSLI------PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
....+.++||+|........ ......+|.+++|.|++... +.......+.... + ..-+|.||.|....
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~ 247 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAK 247 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCc
Confidence 12378999999965433211 11133688999999987652 2222222222211 1 23566799996432
Q ss_pred cccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
. -.+.......+.++..++. |+.+++
T Consensus 248 ~----G~~ls~~~~~~~Pi~fig~--Ge~v~D 273 (437)
T PRK00771 248 G----GGALSAVAETGAPIKFIGT--GEKIDD 273 (437)
T ss_pred c----cHHHHHHHHHCcCEEEEec--CCCccc
Confidence 2 3455556666766555543 555543
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.21 E-value=8.1e-06 Score=52.39 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 125 (170)
.+.+.++||+|... ....++..+|-++++....-.+.+.-.+. ..+ ..+ =++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-~~~-----~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIM-EIA-----DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHh-hhc-----CEEEEeCCC
Confidence 46889999988542 23457889999999988763333322222 222 222 277789987
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.21 E-value=1.4e-05 Score=59.75 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=52.3
Q ss_pred EEEEEEEeCCCcccccccchhh------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
.+.+.++||+|........... .-+.+.+++|.|+... ++.......+.... ++ .-++.||.|.....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i-~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GL-TGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CC-CEEEEeCccCcccc
Confidence 4579999999954332211111 2357889999998754 23333334443222 12 35557999964322
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
-.+...+...++++..++. |+.+++
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC--CCChhh
Confidence 2366666677776655544 454544
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.18 E-value=1.1e-05 Score=53.39 Aligned_cols=83 Identities=24% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEEEEEEeCCCccccccc--chhh---hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 57 TVRLQLWDTAGQERFRSL--IPSY---IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
.....++.+.|-.....+ .... .-..+.+|.++|+.+-.........+..-..... +++.||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE- 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-
Confidence 356778888884443333 0000 2256889999998765333344333332222222 7888999997654
Q ss_pred cCHHHHHHHHhhcC
Q 030880 132 VSIEEGEAKSRELN 145 (170)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (170)
...+..++..++.+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 12244555555443
No 407
>PRK13695 putative NTPase; Provisional
Probab=98.17 E-value=6.7e-05 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
+++.+.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=98.14 E-value=2.3e-05 Score=58.62 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCccccccc-c---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSL-I---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
.+.+.++||+|....... . ... .-..+.+++|.|....+ +.......+.... ++ .-++.||.|.....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i-~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GL-TGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CC-CEEEEeCccCcccc
Confidence 467999999995432211 1 111 12577889999986542 2323333333221 12 24566999964322
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
-.+.......++++..++. |+.+++
T Consensus 257 ----G~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC--CCcccc
Confidence 2255566666776655544 455443
No 409
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=5.9e-06 Score=68.01 Aligned_cols=116 Identities=19% Similarity=0.129 Sum_probs=65.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCccc--------ccccchhh----
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQER--------FRSLIPSY---- 78 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~--------~~~~~~~~---- 78 (170)
-+|+|++|+||||++..--.+-.........+..... +..++ .-.-.-.++||.|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4799999999999986432211100000000000000 11110 1112466889988221 12234332
Q ss_pred -----hcCCcEEEEEEeCCCh------h--h-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 79 -----IRDSSVAVVVYDVASR------Q--S-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 79 -----~~~~~~~i~v~d~~~~------~--s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
.+-.|++|++.|+.+- + . ...+...+.++........|+.|++||.|+.+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2358999999998742 1 1 22356667777777778899999999999965
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=7.1e-05 Score=57.12 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=70.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEE---------------EEEEE------------CCeEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLS---------------KTMYL------------EDRTV 58 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~---------------~~~~~------------~~~~~ 58 (170)
.-.++++|++|+||||++..|....... ........+.+. ..+.. ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3478899999999999998886521110 000001111100 00000 01346
Q ss_pred EEEEEeCCCcccccccchh---hhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC
Q 030880 59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 133 (170)
.+.|+||+|.......... .+. .....++|++.+. +...+...+..+... .+.-+|+||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~~---- 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETGR---- 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCccc----
Confidence 8999999995533221110 011 1223566666653 233333333333321 345678899997432
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 134 IEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
...+.......+.++..++ +|+.|
T Consensus 500 lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 3556666666676655444 34444
No 411
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.8e-05 Score=59.44 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC------------CCC----cccceeeeEEEEEEE--------------EECCe
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDK------------FDN----TYQATIGIDFLSKTM--------------YLEDR 56 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~----~~~~~~~~~~~~~~~--------------~~~~~ 56 (170)
..--++.++.....|||||-..|.... +.+ +.....++....... ..++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 344578889999999999999887531 111 111111111111100 11345
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CccccCHH
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EKRQVSIE 135 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~ 135 (170)
.+.++++|.||+-.|.+.....++-.|+.++|+|+-+.--.+.-..+...+.. .+.-++++||+|.. -+-+++.+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHH
Confidence 68899999999999999999999999999999998755222111112222222 23336678999963 12334444
Q ss_pred HH
Q 030880 136 EG 137 (170)
Q Consensus 136 ~~ 137 (170)
+.
T Consensus 173 eL 174 (842)
T KOG0469|consen 173 EL 174 (842)
T ss_pred HH
Confidence 43
No 412
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.10 E-value=3.5e-05 Score=46.30 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=51.2
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 12 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
+.+.| ..|+||||+...+...... ...+..-.+.. ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d--------~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLD--------PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCC--------CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 45666 6689999998776543221 11122222211 116799999998543 233466788999999998
Q ss_pred CCChhhHHhHHHHHH
Q 030880 91 VASRQSFLNTSKWID 105 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~ 105 (170)
.+ ..++..+.++++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 556666666655
No 413
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.06 E-value=0.00014 Score=49.56 Aligned_cols=77 Identities=30% Similarity=0.289 Sum_probs=44.4
Q ss_pred EEEEEeC-CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880 59 RLQLWDT-AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 59 ~~~i~D~-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (170)
.+.++|| +|.+.+ -+...+++|.+|+|.|++. +|+...++ +.++.+..+ -.++.+|+||.|-. ....
T Consensus 135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e~------e~~~ 202 (255)
T COG3640 135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDEE------EELL 202 (255)
T ss_pred cEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccch------hHHH
Confidence 4556665 333322 2344668999999999873 44444333 233333321 27889999999953 2334
Q ss_pred HHHHhhcCCe
Q 030880 138 EAKSRELNVM 147 (170)
Q Consensus 138 ~~~~~~~~~~ 147 (170)
...+...+..
T Consensus 203 ~~~~~~~~~~ 212 (255)
T COG3640 203 RELAEELGLE 212 (255)
T ss_pred HhhhhccCCe
Confidence 4445555543
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=3.5e-05 Score=57.42 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.++++|++|+||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 415
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=3.8e-05 Score=56.56 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=68.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC----------CCccc-----------ceeeeEEEEEEE------EE---C-CeE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQ-----------ATIGIDFLSKTM------YL---E-DRT 57 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~-----------~~~~~~~~~~~~------~~---~-~~~ 57 (170)
+..|+++|++|+||||++..|..... .+.+. ...+........ .+ . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46799999999999999998864211 00000 000111110000 00 0 113
Q ss_pred EEEEEEeCCCccccccc----chhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 58 VRLQLWDTAGQERFRSL----IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
+.+.++||+|....... ....+ ...+-+++|.|++... ..+...+..+.. .++ -=+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~i-dglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHI-DGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CCC-CEEEEEcccCCCC--
Confidence 57899999996432221 12222 2356778888875331 222333333322 112 2455699997543
Q ss_pred cCHHHHHHHHhhcCCeEEEEe
Q 030880 132 VSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (170)
.-.+...+...+.++..++
T Consensus 393 --~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2445566666666554443
No 416
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.9e-05 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..-++++|++|+||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999998874
No 417
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=7.9e-05 Score=54.68 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCcccccccc----hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSLI----PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
.+.+.++||+|........ ..+.. ..+.+++|.+++ ....++...+..+. .. .+--++.||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~---~l-~i~glI~TKLDET~~- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA---EI-PIDGFIITKMDETTR- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC---cC-CCCEEEEEcccCCCC-
Confidence 4689999999975433221 22222 345556666653 22333333333221 11 223556799997433
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
.-.+...+...+.++..++ +|++|.+
T Consensus 358 ---~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 ---IGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred ---ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 3446666677777655444 3444443
No 418
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.96 E-value=9.3e-05 Score=44.70 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred EEE-cCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880 13 VFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (170)
Q Consensus 13 ~v~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 91 (170)
+++ +..|+||||+...|-............-.+.... . ...+.++|+|+... ......+..+|.++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----F-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ 74 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----C-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC
Confidence 444 5678999998776654322110111111111111 1 11789999997543 3344567899999999886
Q ss_pred CChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeC
Q 030880 92 ASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK 123 (170)
Q Consensus 92 ~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 123 (170)
+ ..++..+..+++.+.....+ ...+.+|+|+
T Consensus 75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5 55666777777766655433 4456677775
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=9.6e-05 Score=55.46 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=48.9
Q ss_pred EEEEEEEeCCCcccccc----cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 57 TVRLQLWDTAGQERFRS----LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.+.+.++||+|...... ....++. ...-+.+|.+++.. ...+...+..+.. .+. --++.||.|....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~~-~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LPL-DGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CCC-CEEEEeccccccc
Confidence 36899999999654321 1222333 23456777887643 1222222222221 111 2466799997433
Q ss_pred cccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
...+.......+.++..++ +|++|
T Consensus 373 ----~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 ----LGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ----ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2356677777777655554 34554
No 420
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=4e-05 Score=55.74 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=56.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc---------------------ceeeeEEEEEEEEE-------------C
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ---------------------ATIGIDFLSKTMYL-------------E 54 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~ 54 (170)
+--|+++|..|+||||.+.+|........+. .-...+++...... .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 3458899999999999988776421100000 00112222221111 2
Q ss_pred CeEEEEEEEeCCCcccccc-cchhh-----hcCCcEEEEEEeCCChhhHHhHHHHHHH
Q 030880 55 DRTVRLQLWDTAGQERFRS-LIPSY-----IRDSSVAVVVYDVASRQSFLNTSKWIDE 106 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 106 (170)
.+++.+.|.||+|.+.... +.... .-+.|-+|+|.|++-.+.-+...+-+++
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 4568999999999554322 21111 2368999999999977665554443333
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.89 E-value=0.00023 Score=41.75 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=44.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-chhhhcCCcEEEEEEe
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD 90 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 90 (170)
+++.|..|+||||+...+........ ....-.+ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 57889999999999987765432211 1111111 7889999975432211 1455678999999998
Q ss_pred CCCh
Q 030880 91 VASR 94 (170)
Q Consensus 91 ~~~~ 94 (170)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7633
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.88 E-value=0.00011 Score=54.04 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=69.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEE-----------------EEE----------CCeEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----------------MYL----------EDRTV 58 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------~~~----------~~~~~ 58 (170)
.-.++++||+|+||||-+-+|-..... .......+.|.+..- +.. .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 456899999999999999888765431 111222222332210 000 01345
Q ss_pred EEEEEeCCCcccccccc----hhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 59 RLQLWDTAGQERFRSLI----PSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~----~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
.+.++||.|...++... ..++.. ..-+.+|++++.. .+.++..+..++.. +.. -++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~s--- 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETTS--- 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccCc---
Confidence 89999999977655432 233332 3334566676644 33444444444321 222 344599996432
Q ss_pred CHHHHHHHHhhcCCeE
Q 030880 133 SIEEGEAKSRELNVMF 148 (170)
Q Consensus 133 ~~~~~~~~~~~~~~~~ 148 (170)
.-.....+.+.+.++
T Consensus 354 -~G~~~s~~~e~~~PV 368 (407)
T COG1419 354 -LGNLFSLMYETRLPV 368 (407)
T ss_pred -hhHHHHHHHHhCCCe
Confidence 344555555555543
No 423
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.85 E-value=7.1e-05 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
--+++.|+.|+|||||++.+.....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999987643
No 424
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=1.5e-05 Score=52.27 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998864
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.84 E-value=1.6e-05 Score=49.02 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 426
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.5e-05 Score=52.65 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.||+++|+||+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.0002 Score=57.10 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEE---------------EE-EE-----------CCeEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSK---------------TM-YL-----------EDRTVR 59 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~---------------~~-~~-----------~~~~~~ 59 (170)
--++++|+.|+||||++.+|........ .....+.+.+.. .+ .. ....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3578999999999999998875321100 000111111100 00 00 012347
Q ss_pred EEEEeCCCccccccc----chhh--hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 60 LQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 60 ~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
+.++||+|....... .... ....+-.++|.|++.. +.+.++...+.. ....+ +-=+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~---~~~~~-i~glIlTKLDEt~~--- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRH---GAGED-VDGCIITKLDEATH--- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhh---cccCC-CCEEEEeccCCCCC---
Confidence 899999994322211 1111 1235567888888743 334433332222 11111 22455799997543
Q ss_pred CHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 133 SIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
.-.+..+....++++..++ +|++|
T Consensus 339 -~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 -LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred -ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 2345555666666555444 35555
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.82 E-value=2.5e-05 Score=42.07 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
..++.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998764
No 429
>PRK07261 topology modulation protein; Provisional
Probab=97.81 E-value=1.8e-05 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+|+++|++|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 430
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.79 E-value=0.00021 Score=45.07 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
.-.+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45689999999999999999987543
No 431
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.79 E-value=2.1e-05 Score=50.02 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030880 12 LVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~ 31 (170)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999974
No 432
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.79 E-value=3.4e-05 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+-.+++||.||||||+.+.+..
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHH
Confidence 356789999999999999998864
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.79 E-value=0.00036 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
.++.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 566799999999999999864
No 434
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.78 E-value=7e-05 Score=52.96 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=37.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
..+++++|+|-|++|||||+|.+..... .....|..+...... +.+.+.. .+.++||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence 4678999999999999999998875322 111223333222221 2333333 5889999993
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.00018 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
--++++|++|+||||++.+|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 3588999999999999998875
No 436
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.74 E-value=0.0012 Score=43.08 Aligned_cols=137 Identities=7% Similarity=0.037 Sum_probs=92.9
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
.++......|+++|..+.++..|.+.+...... ........ .. .. .|. + ....=...
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a--~s--LP-----Lp~--e----~~~lRprI 65 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLA--KS--LP-----LPS--E----NNNLRPRI 65 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEe--cc--CC-----Ccc--c----ccCCCcee
Confidence 345556778999999999999999999852211 01101000 00 00 010 0 11112368
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
|.++|++|.+...|+..++.-+..+...+-. -.++++++.....+...+...+..+++..++++++.+.-.+.++...+
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence 9999999999999999998888777554433 335666677766666778899999999999999999888887776544
Q ss_pred h
Q 030880 163 L 163 (170)
Q Consensus 163 ~ 163 (170)
-
T Consensus 145 A 145 (176)
T PF11111_consen 145 A 145 (176)
T ss_pred H
Confidence 3
No 437
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.74 E-value=0.00014 Score=46.15 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=35.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
--|++-|+-|+|||||.+.+..+-.........+++...........-+.+.++-....++
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee 86 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEE 86 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChHH
Confidence 3467789999999999999987655433333333333222211233445666666554443
No 438
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.74 E-value=4.3e-05 Score=57.36 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=38.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.+.|-++|-|++||||+||.|.+++.... ..|.-+..+++ +.+.. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEcCC---CceecCCCC
Confidence 48899999999999999999999876433 22333323333 33333 577999999
No 439
>PRK10646 ADP-binding protein; Provisional
Probab=97.73 E-value=0.00023 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-|++-|+-|+|||||++.+...-.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 377889999999999999987544
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.0012 Score=49.05 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-----Ccccce--------------------eeeEEEEEEEE-------ECCe
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-----NTYQAT--------------------IGIDFLSKTMY-------LEDR 56 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~--------------------~~~~~~~~~~~-------~~~~ 56 (170)
+-.++++|++|+||||.+.++...... ...... .+.+....... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999887642110 000000 01111000000 0113
Q ss_pred EEEEEEEeCCCcccccc----cchhhhcCC--c-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 57 TVRLQLWDTAGQERFRS----LIPSYIRDS--S-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.+.+.++||+|...... ....++... + -.++|.|++.. ...+...+..+.. . -+-=++.||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~---~-~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP---F-SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC---C-CCCEEEEEeccCCCc
Confidence 46899999999553322 112222322 2 57889998865 2233333333321 1 123455699997543
Q ss_pred cccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
. -.+..++...+.++..++ +|+++
T Consensus 328 ~----G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 V----GNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred c----hHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2 345555666666554433 35555
No 441
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=0.00017 Score=50.90 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=71.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC----------Cc-----------ccceeeeEEEEEEEE---------E-CCeEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD----------NT-----------YQATIGIDFLSKTMY---------L-EDRTV 58 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~----------~~-----------~~~~~~~~~~~~~~~---------~-~~~~~ 58 (170)
-+++++|++|+||||++..+...... +. +....+++.....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999877542110 00 000011111110000 0 11246
Q ss_pred EEEEEeCCCccccccc----chhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 59 RLQLWDTAGQERFRSL----IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
.+.++||+|....... +..++ .+.+-+++|.|++.. .+++..++..+.. . .+-=++.||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~---~-~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD---I-HIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC---C-CCCEEEEEeecCCCC---
Confidence 8999999996543221 11222 245668889997633 1223333333322 1 223455699997543
Q ss_pred CHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 133 SIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
.-.+...+...+.++..++ +|+++.
T Consensus 227 -~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2345566666666654443 344443
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.69 E-value=2.5e-05 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
||+|.|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.7e-05 Score=52.77 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
|+++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988763
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.67 E-value=3.9e-05 Score=51.65 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++||+|||||||++.+-.-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58899999999999999886533
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.66 E-value=0.00031 Score=47.37 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030880 12 LVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~ 33 (170)
++++|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 446
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.65 E-value=0.00019 Score=50.99 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------------
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------------- 70 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------------- 70 (170)
+.....+++++|+++.|||++++++........ ... ...+.+..+.+|....
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344456899999999999999999987543221 111 1122444444443111
Q ss_pred ----------ccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 71 ----------FRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 71 ----------~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
........++....=++++|=-+. -+..+....++.++.... ..+|++.+|++-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111233456678888888884322 345555666666655543 678999888754
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.65 E-value=4.4e-05 Score=52.08 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|||||||++-+-.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999886543
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=5.8e-05 Score=41.85 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030880 12 LVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~ 33 (170)
+.+.|++|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988653
No 449
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.63 E-value=0.0036 Score=41.17 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=50.5
Q ss_pred EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH
Q 030880 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (170)
.+.++|+|+... ......+..+|.++++.+.+ ..++..+...+..+.... .....++.|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 689999997543 23445578999999999876 345555555555554421 23466788999864322 122234
Q ss_pred HHHhhcCCeEE
Q 030880 139 AKSRELNVMFI 149 (170)
Q Consensus 139 ~~~~~~~~~~~ 149 (170)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44445565543
No 450
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.62 E-value=7.5e-05 Score=50.69 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+.+..-|.+.|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999999875
No 451
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=6.3e-05 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.=+++.||+|+|||||++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457888999999999999999876
No 452
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.59 E-value=0.001 Score=44.00 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=59.6
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (170)
..+.+.++|+|+... ......+..+|.++++...+ ..+...+.+.+..+... +.|+.++.||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 457899999996532 23345578999999999987 44555666666655433 4677899999996432 345
Q ss_pred HHHHHHhhcCCeEEE
Q 030880 136 EGEAKSRELNVMFIE 150 (170)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (170)
++.++.++.+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888877653
No 453
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.59 E-value=5.4e-05 Score=51.51 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=37.3
Q ss_pred EEEEEEeCCCccccccc----c--hhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880 58 VRLQLWDTAGQERFRSL----I--PSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 125 (170)
-...++|+|||-++-.. + ...+++.+.-+.++.+. +|..|- ...+-.+.....-..|-+=|..|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence 46889999998775322 1 22344566555555443 454443 2333333332223466666679999
Q ss_pred CC
Q 030880 126 LV 127 (170)
Q Consensus 126 ~~ 127 (170)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 75
No 454
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.58 E-value=0.0001 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-|++-|+-|+|||||++.+....
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47778999999999999888754
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.58 E-value=7.1e-05 Score=47.20 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999887644
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.55 E-value=0.00078 Score=49.23 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
...+|++.|++|||||||++.++..-.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 357899999999999999999987543
No 457
>PRK14530 adenylate kinase; Provisional
Probab=97.55 E-value=8.5e-05 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
.+|+++|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 458
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.55 E-value=9.8e-05 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..+++|+++|+|||||||+...|...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988653
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.54 E-value=9e-05 Score=46.39 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDN 36 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~ 36 (170)
-.++++|++|+||||++..+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999998765543
No 460
>PRK06217 hypothetical protein; Validated
Probab=97.54 E-value=8.6e-05 Score=49.40 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 461
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.53 E-value=8.5e-05 Score=54.17 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=40.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.+.+++-|+|-|++||||+||+|..+..-.. .+..+.+.....+..+. .+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence 4568999999999999999999998776332 22223333333343333 788999999
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.52 E-value=9.2e-05 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030880 12 LVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~ 33 (170)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 463
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.0013 Score=43.50 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-.+.++|+.|+|||||++.+.+-..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3688999999999999999887543
No 464
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.51 E-value=9.6e-05 Score=46.81 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999864
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.51 E-value=9.4e-05 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.50 E-value=0.0001 Score=49.16 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999664
No 467
>PRK03839 putative kinase; Provisional
Probab=97.50 E-value=9.8e-05 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
+|+++|++|+||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 468
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.49 E-value=0.00068 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
...+|+++|++|||||||++.|+..-.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999986543
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.49 E-value=0.00011 Score=44.23 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 030880 10 YKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~ 30 (170)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999976
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.48 E-value=0.0001 Score=48.78 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 471
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.00016 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+....-++++|++|+|||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344566888999999999999999754
No 472
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=0.00012 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.46 E-value=0.00013 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++|++++|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999988864
No 474
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00049 Score=51.04 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=61.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC----CC------CCcccce-----------eeeEEEEEEEE-----E-------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQAT-----------IGIDFLSKTMY-----L------- 53 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~----~~------~~~~~~~-----------~~~~~~~~~~~-----~------- 53 (170)
.++..|+++|..|+||||..-+|... .. .+.+.|. .+.+++..... +
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 34678999999999999998876531 00 1111110 11122221100 0
Q ss_pred -CCeEEEEEEEeCCCcccccccchh------hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880 54 -EDRTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (170)
Q Consensus 54 -~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 126 (170)
....+.+.|+||+|....+...-. -.-+.|=+++|.|+.-.+.-.+...-+++-.. + .=|+.||.|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-----i-tGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-----I-TGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-----C-ceEEEEcccC
Confidence 123458999999995544332111 13378899999998866544443333232211 1 1344588875
No 475
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00011 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
++++||+|||||||++.+.+=
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 788999999999999988763
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.43 E-value=0.00014 Score=48.45 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.-.++++|++|+|||||++.+.+-.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999988654
No 477
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00013 Score=49.19 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=17.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 030880 11 KLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~ 30 (170)
=.+++||+|||||||++.+-
T Consensus 35 VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 36889999999999998763
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.42 E-value=0.00013 Score=50.74 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368899999999999999886
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.42 E-value=0.00015 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~ 30 (170)
.-.++++|+.|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999886
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.42 E-value=0.00014 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 481
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=48.47 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.=|+++|++|+|||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348889999999999999998753
No 482
>PRK14532 adenylate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999753
No 483
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.42 E-value=0.00021 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...-|++.|.+|+||||+.+.+...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988653
No 484
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.41 E-value=0.00016 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.|+++|+.++|||||++.|++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998653
No 485
>PRK01889 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.00024 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999997543
No 486
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00021 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-+.++|.+|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35889999999999999999864
No 487
>PRK08233 hypothetical protein; Provisional
Probab=97.41 E-value=0.00019 Score=47.51 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..-|.+.|++|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356788899999999999999764
No 488
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.40 E-value=0.0008 Score=51.81 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
+++.||+|+||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 455699999999999988764
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.39 E-value=0.00015 Score=48.20 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-|+++|++||||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999873
No 490
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.38 E-value=0.001 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
..++++.|++|||||||++.|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998743
No 491
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.38 E-value=0.0014 Score=46.27 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-+++.|++|+||||+++.++...
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999987654
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.37 E-value=0.0002 Score=48.60 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+...|.+.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988764
No 493
>PRK13949 shikimate kinase; Provisional
Probab=97.36 E-value=0.00019 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
+|+++|++|+||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987653
No 494
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.00019 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+.+|+++|+|||||||+...+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988654
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.35 E-value=0.00018 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
|.+.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988653
No 496
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0014 Score=47.14 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc---------------------eeeeEEEEEEEE-------------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY------------- 52 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~------------- 52 (170)
..++-++++|-.|+||||-|-+|..........- -.+.+.......
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3467899999999999999988765211110000 011111111000
Q ss_pred ECCeEEEEEEEeCCCcccccc-c------chhhhcCC-----cEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEE
Q 030880 53 LEDRTVRLQLWDTAGQERFRS-L------IPSYIRDS-----SVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVL 119 (170)
Q Consensus 53 ~~~~~~~~~i~D~~g~~~~~~-~------~~~~~~~~-----~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iv 119 (170)
-...++.+.++||+|.-.-.. + ..+.++.. +-++++.|++..+ ++...+.+ ++.-. + --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l-~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----L-DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----C-ceE
Confidence 012457899999999332111 1 11112233 3388888988664 44444433 33322 1 245
Q ss_pred EEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++||.|-...-.+ +...+..+++|+..+-. |++++++
T Consensus 290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 6799996443322 33445666776555432 4555543
No 497
>PLN02200 adenylate kinase family protein
Probab=97.34 E-value=0.00029 Score=48.72 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.+..|+++|+|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998875
No 498
>PRK02496 adk adenylate kinase; Provisional
Probab=97.32 E-value=0.00023 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+++++|++|+||||+.+.|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988653
No 499
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.32 E-value=0.0002 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
+|+++|++||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 500
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.00023 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
Done!