Query 030880
Match_columns 170
No_of_seqs 147 out of 1651
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.7E-45 2.3E-49 246.2 17.7 165 5-169 9-173 (216)
2 1ek0_A Protein (GTP-binding pr 100.0 7.1E-38 2.4E-42 204.5 20.1 163 8-170 2-167 (170)
3 2a5j_A RAS-related protein RAB 100.0 3.1E-38 1.1E-42 210.3 18.7 164 5-168 17-180 (191)
4 2ew1_A RAS-related protein RAB 100.0 1.9E-38 6.5E-43 213.0 17.6 162 7-168 24-185 (201)
5 1r2q_A RAS-related protein RAB 100.0 5.8E-38 2E-42 204.9 19.3 163 7-169 4-166 (170)
6 2efe_B Small GTP-binding prote 100.0 1.2E-37 4.1E-42 205.5 20.5 164 6-169 9-172 (181)
7 1z0f_A RAB14, member RAS oncog 100.0 5E-38 1.7E-42 206.8 18.3 163 6-168 12-174 (179)
8 2y8e_A RAB-protein 6, GH09086P 100.0 8.7E-38 3E-42 205.7 19.4 164 6-169 11-174 (179)
9 2hup_A RAS-related protein RAB 100.0 2.8E-38 9.6E-43 212.2 17.0 162 7-168 27-189 (201)
10 2fu5_C RAS-related protein RAB 100.0 1.3E-38 4.5E-43 210.6 15.2 162 7-168 6-167 (183)
11 2gf9_A RAS-related protein RAB 100.0 1.3E-37 4.5E-42 206.9 20.0 162 7-168 20-181 (189)
12 3tkl_A RAS-related protein RAB 100.0 1.2E-37 4.1E-42 208.0 19.6 162 7-168 14-175 (196)
13 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-37 3.9E-42 209.8 19.1 163 6-168 5-167 (206)
14 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-37 4.4E-42 207.5 19.1 163 7-169 21-183 (192)
15 2bme_A RAB4A, RAS-related prot 100.0 9.4E-38 3.2E-42 206.9 18.2 162 7-168 8-169 (186)
16 1z0j_A RAB-22, RAS-related pro 100.0 2.5E-37 8.5E-42 202.0 19.9 163 7-169 4-166 (170)
17 1z08_A RAS-related protein RAB 100.0 4.9E-38 1.7E-42 205.4 16.5 162 7-168 4-165 (170)
18 3t5g_A GTP-binding protein RHE 100.0 7.7E-38 2.6E-42 206.6 17.0 163 5-168 2-165 (181)
19 3kkq_A RAS-related protein M-R 100.0 2.2E-37 7.6E-42 204.7 18.5 164 5-169 14-179 (183)
20 1z06_A RAS-related protein RAB 100.0 3.4E-37 1.2E-41 204.9 19.4 165 6-170 17-186 (189)
21 3tw8_B RAS-related protein RAB 100.0 2.6E-37 8.7E-42 203.8 18.4 162 6-168 6-167 (181)
22 2oil_A CATX-8, RAS-related pro 100.0 2.6E-37 9E-42 206.1 18.4 163 6-168 22-184 (193)
23 2il1_A RAB12; G-protein, GDP, 100.0 8.7E-38 3E-42 208.4 16.0 165 4-168 21-186 (192)
24 2fn4_A P23, RAS-related protei 100.0 3.1E-37 1.1E-41 203.4 18.1 163 5-168 5-168 (181)
25 2o52_A RAS-related protein RAB 100.0 1.7E-37 5.7E-42 208.2 16.5 162 7-168 23-184 (200)
26 2g6b_A RAS-related protein RAB 100.0 5.3E-37 1.8E-41 202.3 18.5 163 6-168 7-170 (180)
27 3bc1_A RAS-related protein RAB 100.0 3E-37 1E-41 205.6 17.4 168 1-168 3-181 (195)
28 1zbd_A Rabphilin-3A; G protein 100.0 6E-37 2.1E-41 205.8 18.7 162 7-168 6-167 (203)
29 3cbq_A GTP-binding protein REM 100.0 1.5E-37 5E-42 207.8 15.6 164 5-168 19-184 (195)
30 3c5c_A RAS-like protein 12; GD 100.0 2.3E-37 7.8E-42 205.6 16.1 162 5-168 17-182 (187)
31 1z2a_A RAS-related protein RAB 100.0 3.8E-37 1.3E-41 200.8 16.7 161 7-168 3-163 (168)
32 1g16_A RAS-related protein SEC 100.0 3.3E-37 1.1E-41 201.4 16.4 160 8-168 2-161 (170)
33 2hxs_A RAB-26, RAS-related pro 100.0 1.8E-37 6.3E-42 204.1 15.0 163 6-168 3-169 (178)
34 3dz8_A RAS-related protein RAB 100.0 3E-38 1E-42 210.4 11.3 163 7-169 21-183 (191)
35 3cpj_B GTP-binding protein YPT 100.0 3.8E-37 1.3E-41 209.7 17.0 162 7-168 11-172 (223)
36 1c1y_A RAS-related protein RAP 100.0 5.6E-37 1.9E-41 199.7 17.0 161 8-169 2-164 (167)
37 2p5s_A RAS and EF-hand domain 100.0 1.9E-37 6.4E-42 207.8 15.0 164 5-168 24-193 (199)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.4E-36 4.6E-41 199.8 18.3 163 5-168 3-170 (177)
39 2atx_A Small GTP binding prote 100.0 5.7E-37 2E-41 204.6 16.6 167 1-169 10-190 (194)
40 3q85_A GTP-binding protein REM 100.0 6.7E-37 2.3E-41 199.9 16.6 161 9-169 2-164 (169)
41 3oes_A GTPase rhebl1; small GT 100.0 2.8E-37 9.6E-42 207.2 14.6 164 4-168 19-183 (201)
42 1u8z_A RAS-related protein RAL 100.0 1.1E-36 3.7E-41 198.4 16.6 161 7-168 2-163 (168)
43 3ihw_A Centg3; RAS, centaurin, 100.0 1.4E-36 4.8E-41 201.3 17.4 159 4-169 15-177 (184)
44 3q3j_B RHO-related GTP-binding 100.0 6.4E-37 2.2E-41 207.4 15.9 163 4-168 22-199 (214)
45 2atv_A RERG, RAS-like estrogen 100.0 1.1E-36 3.9E-41 203.5 16.7 166 2-169 21-188 (196)
46 3reg_A RHO-like small GTPase; 100.0 2.6E-36 8.7E-41 201.5 17.8 161 6-168 20-184 (194)
47 1kao_A RAP2A; GTP-binding prot 100.0 9.1E-37 3.1E-41 198.6 15.3 160 8-168 2-162 (167)
48 2a9k_A RAS-related protein RAL 100.0 2.1E-36 7.1E-41 200.4 16.9 163 5-168 14-177 (187)
49 2bov_A RAla, RAS-related prote 100.0 3.3E-36 1.1E-40 202.4 17.9 163 5-168 10-173 (206)
50 1x3s_A RAS-related protein RAB 100.0 3.3E-36 1.1E-40 200.8 17.7 161 7-168 13-174 (195)
51 3clv_A RAB5 protein, putative; 100.0 6.1E-36 2.1E-40 200.8 18.9 161 5-168 3-200 (208)
52 2iwr_A Centaurin gamma 1; ANK 100.0 4.2E-36 1.4E-40 197.8 17.0 158 4-168 2-165 (178)
53 1vg8_A RAS-related protein RAB 100.0 4.8E-36 1.6E-40 201.9 17.7 162 6-168 5-171 (207)
54 3cph_A RAS-related protein SEC 100.0 5.4E-36 1.8E-40 202.4 18.0 161 7-168 18-178 (213)
55 1ky3_A GTP-binding protein YPT 100.0 2.1E-36 7.3E-41 199.6 15.4 163 6-168 5-174 (182)
56 2nzj_A GTP-binding protein REM 100.0 4E-36 1.4E-40 197.2 16.5 161 7-168 2-165 (175)
57 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-36 5.5E-41 205.0 14.6 164 3-168 3-176 (212)
58 3q72_A GTP-binding protein RAD 100.0 4.9E-36 1.7E-40 195.3 16.3 158 9-168 2-160 (166)
59 2f7s_A C25KG, RAS-related prot 100.0 1.5E-36 5.2E-41 205.8 14.0 162 7-168 23-195 (217)
60 2erx_A GTP-binding protein DI- 100.0 1.3E-35 4.4E-40 194.1 17.5 161 8-169 2-164 (172)
61 3l0i_B RAS-related protein RAB 100.0 4.1E-38 1.4E-42 211.0 5.3 164 7-170 31-194 (199)
62 2q3h_A RAS homolog gene family 100.0 1.3E-35 4.5E-40 199.0 17.4 161 6-168 17-191 (201)
63 4djt_A GTP-binding nuclear pro 100.0 3.2E-36 1.1E-40 204.4 14.2 164 5-168 7-171 (218)
64 4dsu_A GTPase KRAS, isoform 2B 100.0 2.1E-35 7.1E-40 196.0 17.7 160 7-168 2-162 (189)
65 2yc2_C IFT27, small RAB-relate 100.0 6.5E-37 2.2E-41 206.1 10.5 162 7-168 18-188 (208)
66 3con_A GTPase NRAS; structural 100.0 2.3E-35 7.8E-40 196.2 17.9 163 4-168 16-179 (190)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 7.8E-36 2.7E-40 197.6 15.5 161 6-168 4-179 (184)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.4E-35 4.8E-40 196.3 16.5 160 7-168 3-176 (186)
69 2g3y_A GTP-binding protein GEM 100.0 9.3E-36 3.2E-40 200.9 15.6 162 6-168 34-199 (211)
70 1gwn_A RHO-related GTP-binding 100.0 1.1E-35 3.8E-40 200.1 15.3 160 7-168 26-200 (205)
71 4gzl_A RAS-related C3 botulinu 100.0 1.8E-35 6.1E-40 198.9 16.1 163 6-170 27-203 (204)
72 2j1l_A RHO-related GTP-binding 100.0 1.6E-35 5.5E-40 200.5 15.7 160 7-168 32-205 (214)
73 2gf0_A GTP-binding protein DI- 100.0 3.7E-35 1.3E-39 196.3 17.2 163 4-168 3-167 (199)
74 2ce2_X GTPase HRAS; signaling 100.0 6.2E-35 2.1E-39 189.6 17.7 159 8-168 2-161 (166)
75 3bwd_D RAC-like GTP-binding pr 100.0 1.8E-36 6.2E-41 200.0 10.1 163 4-168 3-177 (182)
76 2gco_A H9, RHO-related GTP-bin 100.0 7E-35 2.4E-39 195.6 17.1 160 7-168 23-196 (201)
77 3gj0_A GTP-binding nuclear pro 100.0 5.4E-36 1.8E-40 203.7 11.4 163 3-168 9-171 (221)
78 2fv8_A H6, RHO-related GTP-bin 100.0 9.5E-35 3.2E-39 195.8 17.3 160 7-168 23-196 (207)
79 3t1o_A Gliding protein MGLA; G 100.0 1.2E-35 3.9E-40 198.5 11.0 161 5-169 10-189 (198)
80 2cjw_A GTP-binding protein GEM 100.0 3E-34 1E-38 191.3 17.0 161 7-168 4-168 (192)
81 1f6b_A SAR1; gtpases, N-termin 100.0 9.9E-34 3.4E-38 189.6 16.6 157 7-170 23-197 (198)
82 4bas_A ADP-ribosylation factor 100.0 1.2E-34 4.1E-39 193.8 11.9 161 4-168 12-185 (199)
83 1m2o_B GTP-binding protein SAR 100.0 3.1E-33 1.1E-37 186.1 18.2 157 7-170 21-190 (190)
84 2h17_A ADP-ribosylation factor 100.0 2.4E-33 8.2E-38 185.2 14.4 159 5-170 17-181 (181)
85 2h57_A ADP-ribosylation factor 100.0 6.5E-33 2.2E-37 184.4 16.5 157 7-169 19-184 (190)
86 2f9l_A RAB11B, member RAS onco 100.0 1.9E-32 6.6E-37 183.4 18.7 161 8-168 4-164 (199)
87 1zd9_A ADP-ribosylation factor 100.0 4.9E-34 1.7E-38 189.6 10.6 157 7-169 20-182 (188)
88 2b6h_A ADP-ribosylation factor 100.0 5E-34 1.7E-38 190.2 10.5 157 6-169 26-188 (192)
89 1oix_A RAS-related protein RAB 100.0 2.4E-32 8.2E-37 181.9 18.6 163 7-169 27-189 (191)
90 1r8s_A ADP-ribosylation factor 100.0 3.3E-34 1.1E-38 186.2 9.3 153 10-169 1-159 (164)
91 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-33 5E-38 184.3 12.1 155 7-168 5-165 (171)
92 1ksh_A ARF-like protein 2; sma 100.0 8.6E-33 2.9E-37 183.1 15.0 155 7-168 16-176 (186)
93 3llu_A RAS-related GTP-binding 100.0 3.9E-33 1.3E-37 186.4 12.0 163 4-169 15-194 (196)
94 1fzq_A ADP-ribosylation factor 100.0 1.3E-32 4.6E-37 181.7 14.4 158 6-170 13-176 (181)
95 1zj6_A ADP-ribosylation factor 100.0 7.7E-33 2.6E-37 183.6 13.2 155 7-168 14-174 (187)
96 3th5_A RAS-related C3 botulinu 100.0 1.6E-35 5.5E-40 199.1 0.0 162 7-170 28-203 (204)
97 2wkq_A NPH1-1, RAS-related C3 100.0 4E-32 1.4E-36 194.6 16.8 159 8-168 154-326 (332)
98 2zej_A Dardarin, leucine-rich 100.0 2.1E-33 7.1E-38 186.0 8.2 159 9-168 2-174 (184)
99 2x77_A ADP-ribosylation factor 100.0 2E-33 7E-38 186.6 8.0 155 7-168 20-180 (189)
100 1moz_A ARL1, ADP-ribosylation 100.0 6.6E-32 2.2E-36 178.3 11.9 155 7-168 16-176 (183)
101 3c5h_A Glucocorticoid receptor 100.0 8.7E-33 3E-37 191.6 6.2 163 4-168 14-251 (255)
102 2wji_A Ferrous iron transport 100.0 2.3E-31 7.9E-36 173.3 12.0 153 8-169 2-162 (165)
103 2fh5_B SR-beta, signal recogni 100.0 6.6E-32 2.2E-36 182.6 9.5 161 6-169 4-213 (214)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 2.9E-30 1E-34 183.2 14.4 157 8-168 2-177 (307)
105 3o47_A ADP-ribosylation factor 100.0 2.7E-31 9.1E-36 190.0 8.4 155 8-169 164-324 (329)
106 2qu8_A Putative nucleolar GTP- 100.0 4.6E-30 1.6E-34 175.2 13.7 159 7-168 27-201 (228)
107 2lkc_A Translation initiation 100.0 4.7E-30 1.6E-34 168.7 11.8 151 6-168 5-167 (178)
108 3r7w_B Gtpase2, GTP-binding pr 100.0 9E-31 3.1E-35 184.8 8.8 153 11-170 1-172 (331)
109 3lvq_E ARF-GAP with SH3 domain 100.0 2.4E-30 8.4E-35 194.4 11.5 156 7-169 320-481 (497)
110 1svi_A GTP-binding protein YSX 100.0 2.3E-30 7.9E-35 172.6 9.3 159 3-168 17-191 (195)
111 2wjg_A FEOB, ferrous iron tran 100.0 4E-30 1.4E-34 170.5 9.3 155 5-168 3-165 (188)
112 3dpu_A RAB family protein; roc 100.0 4.6E-30 1.6E-34 194.3 7.7 160 5-168 37-204 (535)
113 2gj8_A MNME, tRNA modification 100.0 1E-29 3.6E-34 166.5 8.3 151 8-168 3-162 (172)
114 2dyk_A GTP-binding protein; GT 100.0 2.3E-29 7.7E-34 162.8 8.8 149 10-169 2-159 (161)
115 2cxx_A Probable GTP-binding pr 100.0 7.7E-30 2.6E-34 169.3 6.1 150 10-168 2-180 (190)
116 3a1s_A Iron(II) transport prot 100.0 1.1E-28 3.7E-33 171.1 11.2 153 7-168 3-163 (258)
117 3iev_A GTP-binding protein ERA 100.0 2.7E-28 9.1E-33 173.1 13.2 161 4-168 5-178 (308)
118 3iby_A Ferrous iron transport 100.0 6.1E-29 2.1E-33 172.1 8.8 150 10-168 2-163 (256)
119 3b1v_A Ferrous iron uptake tra 100.0 6.4E-29 2.2E-33 173.2 7.9 150 9-168 3-160 (272)
120 3pqc_A Probable GTP-binding pr 100.0 2.4E-28 8.2E-33 162.6 10.2 156 3-168 17-190 (195)
121 3i8s_A Ferrous iron transport 100.0 9E-29 3.1E-33 173.0 8.4 153 8-169 2-166 (274)
122 1nrj_B SR-beta, signal recogni 100.0 4.4E-29 1.5E-33 169.2 5.7 147 3-158 6-170 (218)
123 4dhe_A Probable GTP-binding pr 99.9 4.7E-28 1.6E-32 164.6 6.5 159 4-168 24-207 (223)
124 3k53_A Ferrous iron transport 99.9 2.5E-27 8.5E-32 165.6 10.2 153 8-168 2-162 (271)
125 1wf3_A GTP-binding protein; GT 99.9 2.9E-26 9.9E-31 162.0 13.8 155 7-169 5-170 (301)
126 3qq5_A Small GTP-binding prote 99.9 1.9E-27 6.5E-32 174.3 5.7 156 5-169 30-193 (423)
127 3gee_A MNME, tRNA modification 99.9 3E-26 1E-30 170.4 12.2 153 9-168 233-394 (476)
128 2e87_A Hypothetical protein PH 99.9 1.2E-25 4.1E-30 162.6 13.2 157 7-168 165-332 (357)
129 2hjg_A GTP-binding protein ENG 99.9 2.9E-26 1E-30 169.7 9.2 156 7-168 173-345 (436)
130 4dcu_A GTP-binding protein ENG 99.9 8.9E-26 3E-30 167.9 9.9 156 7-168 193-365 (456)
131 1cip_A Protein (guanine nucleo 99.9 3.5E-26 1.2E-30 164.3 6.2 112 57-168 192-340 (353)
132 3sjy_A Translation initiation 99.9 2.2E-24 7.6E-29 158.2 14.7 162 4-168 3-188 (403)
133 1lnz_A SPO0B-associated GTP-bi 99.9 6.8E-26 2.3E-30 162.2 6.1 153 11-168 160-326 (342)
134 1xzp_A Probable tRNA modificat 99.9 3.5E-25 1.2E-29 164.9 9.5 149 9-168 243-401 (482)
135 1s0u_A EIF-2-gamma, translatio 99.9 2.2E-24 7.4E-29 158.5 13.0 160 3-168 2-194 (408)
136 3ohm_A Guanine nucleotide-bind 99.9 1.5E-25 5.1E-30 159.0 5.8 113 56-168 165-314 (327)
137 1wb1_A Translation elongation 99.9 2.3E-24 7.8E-29 161.0 12.0 155 5-168 15-185 (482)
138 2xtz_A Guanine nucleotide-bind 99.9 4.7E-25 1.6E-29 158.4 7.5 113 56-168 181-341 (354)
139 3j2k_7 ERF3, eukaryotic polype 99.9 5.3E-24 1.8E-28 157.5 13.1 157 6-164 14-217 (439)
140 3t5d_A Septin-7; GTP-binding p 99.9 9.4E-25 3.2E-29 152.7 8.0 161 4-168 3-200 (274)
141 1mky_A Probable GTP-binding pr 99.9 4.9E-24 1.7E-28 157.9 11.9 147 10-168 2-162 (439)
142 2ywe_A GTP-binding protein LEP 99.9 8.8E-24 3E-28 160.4 13.1 156 7-168 4-180 (600)
143 3cb4_D GTP-binding protein LEP 99.9 5.1E-24 1.7E-28 161.9 11.7 154 9-168 4-178 (599)
144 3lxx_A GTPase IMAP family memb 99.9 3.1E-24 1E-28 147.4 9.2 159 5-167 25-209 (239)
145 1ega_A Protein (GTP-binding pr 99.9 6.2E-24 2.1E-28 150.2 10.7 156 7-169 6-172 (301)
146 2xtp_A GTPase IMAP family memb 99.9 3E-24 1E-28 149.1 8.9 159 6-168 19-204 (260)
147 3geh_A MNME, tRNA modification 99.9 9.7E-25 3.3E-29 161.8 6.6 148 9-168 224-380 (462)
148 1kk1_A EIF2gamma; initiation o 99.9 8.5E-24 2.9E-28 155.4 11.6 157 6-168 7-196 (410)
149 1zcb_A G alpha I/13; GTP-bindi 99.9 4E-24 1.4E-28 154.1 9.3 112 57-168 200-349 (362)
150 3p26_A Elongation factor 1 alp 99.9 2E-24 7E-29 161.6 7.7 152 8-162 32-228 (483)
151 2ged_A SR-beta, signal recogni 99.9 5.4E-24 1.8E-28 141.5 8.8 116 7-131 46-173 (193)
152 2qtf_A Protein HFLX, GTP-bindi 99.9 2.7E-23 9.4E-28 150.1 12.9 157 9-168 178-350 (364)
153 1zun_B Sulfate adenylate trans 99.9 2.9E-23 1E-27 153.5 12.8 156 7-165 22-217 (434)
154 3lxw_A GTPase IMAP family memb 99.9 1.4E-23 4.9E-28 144.6 10.2 160 6-167 18-203 (247)
155 2hjg_A GTP-binding protein ENG 99.9 1E-24 3.4E-29 161.5 4.3 149 9-168 3-161 (436)
156 3izy_P Translation initiation 99.9 1.1E-25 3.8E-30 168.8 -0.9 155 8-167 3-163 (537)
157 2qag_A Septin-2, protein NEDD5 99.9 7.8E-25 2.7E-29 158.2 3.5 155 8-167 36-228 (361)
158 4fid_A G protein alpha subunit 99.9 2.4E-24 8.2E-29 153.3 5.2 113 56-168 159-324 (340)
159 1jny_A EF-1-alpha, elongation 99.9 3.9E-24 1.3E-28 158.2 6.2 156 6-164 3-205 (435)
160 1mky_A Probable GTP-binding pr 99.9 9E-23 3.1E-27 151.2 13.3 155 8-168 179-351 (439)
161 1r5b_A Eukaryotic peptide chai 99.9 4.3E-24 1.5E-28 159.1 5.7 156 7-164 41-244 (467)
162 1zo1_I IF2, translation initia 99.9 8.7E-25 3E-29 162.8 1.2 153 7-168 2-163 (501)
163 3izq_1 HBS1P, elongation facto 99.9 4.4E-23 1.5E-27 157.7 9.5 154 7-162 165-362 (611)
164 1g7s_A Translation initiation 99.9 1.9E-22 6.6E-27 153.4 12.2 154 7-167 3-213 (594)
165 2elf_A Protein translation elo 99.9 8.7E-23 3E-27 147.8 9.7 142 11-168 23-176 (370)
166 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4.2E-28 156.5 5.2 154 5-168 19-181 (456)
167 2c78_A Elongation factor TU-A; 99.9 2.4E-23 8.1E-28 152.9 6.2 149 6-158 8-180 (405)
168 1d2e_A Elongation factor TU (E 99.9 4.7E-23 1.6E-27 150.9 7.7 157 8-168 2-191 (397)
169 1f60_A Elongation factor EEF1A 99.9 6.1E-24 2.1E-28 157.9 2.4 153 6-163 4-203 (458)
170 3tr5_A RF-3, peptide chain rel 99.9 1.2E-22 4.1E-27 152.9 8.3 115 8-128 12-148 (528)
171 2aka_B Dynamin-1; fusion prote 99.9 1.1E-22 3.8E-27 143.7 4.9 159 6-167 23-248 (299)
172 3avx_A Elongation factor TS, e 99.9 4.1E-22 1.4E-26 158.7 8.3 159 6-168 293-482 (1289)
173 3mca_A HBS1, elongation factor 99.9 2.7E-23 9.2E-28 158.4 1.6 150 6-160 174-371 (592)
174 3def_A T7I23.11 protein; chlor 99.9 9.6E-21 3.3E-25 131.6 14.1 122 7-131 34-168 (262)
175 1pui_A ENGB, probable GTP-bind 99.8 3.3E-21 1.1E-25 129.6 8.8 154 6-168 23-195 (210)
176 2dy1_A Elongation factor G; tr 99.8 5E-21 1.7E-25 147.9 10.6 123 1-127 1-139 (665)
177 1u0l_A Probable GTPase ENGC; p 99.8 6.3E-22 2.2E-26 140.0 5.1 135 24-169 32-170 (301)
178 3t34_A Dynamin-related protein 99.8 3.1E-21 1.1E-25 139.7 7.1 154 10-165 35-254 (360)
179 1h65_A Chloroplast outer envel 99.8 3.9E-20 1.3E-24 129.1 11.6 122 7-131 37-171 (270)
180 2qnr_A Septin-2, protein NEDD5 99.8 4.9E-22 1.7E-26 140.4 1.8 156 8-168 17-210 (301)
181 1udx_A The GTP-binding protein 99.8 1.8E-20 6.3E-25 137.1 9.8 154 11-168 159-321 (416)
182 1wxq_A GTP-binding protein; st 99.8 2E-20 6.9E-25 136.5 9.8 85 10-94 1-114 (397)
183 2qag_C Septin-7; cell cycle, c 99.8 2E-20 6.7E-25 137.0 9.6 158 8-169 30-224 (418)
184 2j69_A Bacterial dynamin-like 99.8 1.1E-19 3.9E-24 140.9 11.9 158 8-168 68-321 (695)
185 2h5e_A Peptide chain release f 99.8 8.2E-20 2.8E-24 137.6 10.4 154 7-166 11-189 (529)
186 1azs_C GS-alpha; complex (lyas 99.8 4.7E-20 1.6E-24 134.0 7.8 112 57-168 216-381 (402)
187 1dar_A EF-G, elongation factor 99.8 1E-19 3.5E-24 141.1 10.0 116 7-128 10-143 (691)
188 1jwy_B Dynamin A GTPase domain 99.8 1.5E-19 5.2E-24 128.6 9.7 106 58-166 131-256 (315)
189 2rdo_7 EF-G, elongation factor 99.8 3.5E-18 1.2E-22 132.7 16.4 119 6-128 7-148 (704)
190 2xex_A Elongation factor G; GT 99.8 7.7E-18 2.6E-22 130.7 11.7 151 6-166 7-179 (693)
191 2x2e_A Dynamin-1; nitration, h 99.7 4.5E-19 1.5E-23 128.0 3.4 158 7-167 29-253 (353)
192 2wsm_A Hydrogenase expression/ 99.7 3.1E-18 1.1E-22 116.0 6.3 150 8-168 29-210 (221)
193 1jal_A YCHF protein; nucleotid 99.7 3E-17 1E-21 117.9 10.7 147 9-155 2-240 (363)
194 2qpt_A EH domain-containing pr 99.7 6E-18 2E-22 128.1 6.9 122 6-130 62-234 (550)
195 2hf9_A Probable hydrogenase ni 99.7 2.3E-20 7.7E-25 126.9 -6.0 150 8-168 37-220 (226)
196 1n0u_A EF-2, elongation factor 99.7 2.2E-17 7.6E-22 130.4 9.5 118 6-127 16-163 (842)
197 3p32_A Probable GTPase RV1496/ 99.7 6.8E-18 2.3E-22 121.9 4.5 101 57-168 171-280 (355)
198 3vqt_A RF-3, peptide chain rel 99.7 3.3E-16 1.1E-20 118.5 12.8 115 8-128 30-166 (548)
199 2dby_A GTP-binding protein; GD 99.7 2.6E-16 8.9E-21 113.6 9.4 154 10-163 2-253 (368)
200 2yv5_A YJEQ protein; hydrolase 99.7 4.3E-16 1.5E-20 110.1 10.0 99 68-169 66-166 (302)
201 2www_A Methylmalonic aciduria 99.6 7.2E-17 2.5E-21 116.2 3.5 100 57-168 166-275 (349)
202 1yrb_A ATP(GTP)binding protein 99.6 3.9E-16 1.3E-20 108.2 4.4 106 58-168 109-253 (262)
203 4a9a_A Ribosome-interacting GT 99.6 2.5E-14 8.7E-19 103.3 13.7 136 8-146 71-222 (376)
204 2p67_A LAO/AO transport system 99.6 3.8E-16 1.3E-20 112.2 3.8 101 57-168 148-257 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.6 3.1E-15 1.1E-19 116.2 7.9 157 7-167 49-273 (772)
206 3j25_A Tetracycline resistance 99.6 4.1E-16 1.4E-20 120.1 2.7 115 10-128 3-133 (638)
207 4fn5_A EF-G 1, elongation fact 99.6 7.1E-14 2.4E-18 109.0 13.7 125 1-129 4-152 (709)
208 3l82_B F-box only protein 4; T 99.6 1.1E-14 3.7E-19 96.2 7.1 102 66-170 110-221 (227)
209 2qm8_A GTPase/ATPase; G protei 99.5 1.8E-15 6.3E-20 108.4 1.9 101 57-168 147-257 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.5 6.9E-14 2.4E-18 101.5 6.3 88 8-95 21-130 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.2E-11 4.2E-16 89.9 14.2 86 8-93 19-127 (392)
212 3l2o_B F-box only protein 4; s 99.4 5.6E-13 1.9E-17 92.1 6.4 102 65-169 194-305 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.2 1.4E-12 4.8E-17 94.6 -0.2 142 9-160 162-319 (369)
214 2j37_W Signal recognition part 99.2 2.1E-11 7.1E-16 91.3 4.8 150 8-168 100-309 (504)
215 3h2y_A GTPase family protein; 99.2 3.9E-11 1.3E-15 86.9 5.6 94 67-167 55-155 (368)
216 2qag_B Septin-6, protein NEDD5 99.2 2E-10 6.9E-15 84.2 9.3 139 10-153 43-217 (427)
217 3h2y_A GTPase family protein; 99.1 3.6E-12 1.2E-16 92.4 -1.8 136 9-154 160-312 (368)
218 3sop_A Neuronal-specific septi 99.1 3.3E-10 1.1E-14 78.8 6.9 136 9-149 2-177 (270)
219 3ec1_A YQEH GTPase; atnos1, at 99.0 1.4E-10 5E-15 84.0 3.5 94 67-167 57-157 (369)
220 1puj_A YLQF, conserved hypothe 98.9 1E-09 3.5E-14 76.8 5.3 96 62-167 3-101 (282)
221 1tq4_A IIGP1, interferon-induc 98.9 6.5E-09 2.2E-13 76.2 8.4 150 9-167 69-248 (413)
222 2v3c_C SRP54, signal recogniti 98.8 1.9E-08 6.5E-13 74.3 8.8 102 56-168 179-307 (432)
223 3dm5_A SRP54, signal recogniti 98.8 1.1E-08 3.7E-13 75.4 7.1 143 8-162 99-281 (443)
224 3cnl_A YLQF, putative uncharac 98.7 1.3E-08 4.4E-13 70.4 4.7 92 65-169 4-98 (262)
225 1puj_A YLQF, conserved hypothe 98.7 2.9E-08 1E-12 69.4 5.4 57 8-69 119-176 (282)
226 3cnl_A YLQF, putative uncharac 98.7 1.2E-08 4E-13 70.7 3.1 57 10-70 100-156 (262)
227 1t9h_A YLOQ, probable GTPase E 98.7 3.1E-08 1.1E-12 69.9 5.3 94 72-168 77-173 (307)
228 3kl4_A SRP54, signal recogniti 98.6 7.3E-08 2.5E-12 71.0 6.2 93 57-161 179-279 (433)
229 1j8m_F SRP54, signal recogniti 98.4 9.5E-07 3.3E-11 62.2 8.1 93 57-162 180-281 (297)
230 1f5n_A Interferon-induced guan 98.4 2E-07 7E-12 71.1 4.6 63 8-70 37-103 (592)
231 3e70_C DPA, signal recognition 98.3 3.5E-06 1.2E-10 60.1 9.2 93 58-162 212-310 (328)
232 2rcn_A Probable GTPase ENGC; Y 98.3 1.9E-06 6.6E-11 62.0 7.7 85 79-167 128-214 (358)
233 3szr_A Interferon-induced GTP- 98.3 1.2E-06 4.1E-11 67.5 7.0 23 11-33 47-69 (608)
234 1bif_A 6-phosphofructo-2-kinas 98.3 5.5E-08 1.9E-12 72.7 -1.4 102 7-110 37-148 (469)
235 1zp6_A Hypothetical protein AT 98.1 3.2E-06 1.1E-10 55.4 3.7 32 1-32 1-32 (191)
236 3q5d_A Atlastin-1; G protein, 97.9 1.6E-05 5.5E-10 58.9 5.0 23 9-31 67-89 (447)
237 1ye8_A Protein THEP1, hypothet 97.8 1.1E-05 3.7E-10 52.5 3.2 23 10-32 1-23 (178)
238 2xxa_A Signal recognition part 97.8 0.00027 9.2E-09 52.3 10.7 84 57-151 183-273 (433)
239 3ney_A 55 kDa erythrocyte memb 97.8 2E-05 6.9E-10 52.0 3.6 29 4-32 14-42 (197)
240 1kgd_A CASK, peripheral plasma 97.8 1.6E-05 5.3E-10 51.8 3.1 23 10-32 6-28 (180)
241 1lvg_A Guanylate kinase, GMP k 97.7 2E-05 7E-10 52.1 3.1 22 10-31 5-26 (198)
242 1knq_A Gluconate kinase; ALFA/ 97.7 3.4E-05 1.2E-09 49.7 3.8 23 9-31 8-30 (175)
243 3iij_A Coilin-interacting nucl 97.6 4E-05 1.4E-09 49.7 3.6 25 7-31 9-33 (180)
244 4gp7_A Metallophosphoesterase; 97.6 2.7E-05 9.2E-10 50.2 2.8 20 11-30 11-30 (171)
245 3a00_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 50.6 2.9 21 12-32 4-24 (186)
246 3tr0_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 51.0 3.0 22 11-32 9-30 (205)
247 1via_A Shikimate kinase; struc 97.6 3.7E-05 1.3E-09 49.6 3.2 21 11-31 6-26 (175)
248 1s96_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 51.7 3.0 24 10-33 17-40 (219)
249 4eun_A Thermoresistant glucoki 97.6 4.4E-05 1.5E-09 50.4 3.4 24 8-31 28-51 (200)
250 2j41_A Guanylate kinase; GMP, 97.6 4.5E-05 1.5E-09 50.4 3.4 26 8-33 5-30 (207)
251 1znw_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 51.1 3.0 22 11-32 22-43 (207)
252 1t9h_A YLOQ, probable GTPase E 97.6 2.7E-05 9.2E-10 55.0 2.2 24 10-33 174-197 (307)
253 1y63_A LMAJ004144AAA protein; 97.6 6E-05 2.1E-09 49.1 3.7 28 5-32 6-33 (184)
254 1z6g_A Guanylate kinase; struc 97.6 4.2E-05 1.4E-09 51.4 3.0 24 10-33 24-47 (218)
255 1ex7_A Guanylate kinase; subst 97.6 4.9E-05 1.7E-09 49.7 3.2 21 12-32 4-24 (186)
256 3cwq_A Para family chromosome 97.6 0.00016 5.3E-09 48.2 5.6 86 57-149 67-153 (209)
257 3asz_A Uridine kinase; cytidin 97.6 5.4E-05 1.8E-09 50.3 3.3 24 8-31 5-28 (211)
258 3tau_A Guanylate kinase, GMP k 97.5 4.8E-05 1.6E-09 50.6 3.0 24 10-33 9-32 (208)
259 3c8u_A Fructokinase; YP_612366 97.5 6.3E-05 2.2E-09 50.0 3.4 24 8-31 21-44 (208)
260 1nn5_A Similar to deoxythymidy 97.5 7.1E-05 2.4E-09 49.8 3.3 24 8-31 8-31 (215)
261 3tif_A Uncharacterized ABC tra 97.5 6.2E-05 2.1E-09 51.1 3.0 23 11-33 33-55 (235)
262 3lw7_A Adenylate kinase relate 97.5 7.2E-05 2.5E-09 47.9 3.2 20 10-29 2-21 (179)
263 2qor_A Guanylate kinase; phosp 97.5 7.2E-05 2.5E-09 49.5 3.1 24 9-32 12-35 (204)
264 1htw_A HI0065; nucleotide-bind 97.5 7.2E-05 2.5E-09 47.6 3.0 24 10-33 34-57 (158)
265 1ly1_A Polynucleotide kinase; 97.5 8.7E-05 3E-09 47.9 3.4 22 10-31 3-24 (181)
266 1kag_A SKI, shikimate kinase I 97.5 7.3E-05 2.5E-09 48.0 3.0 23 10-32 5-27 (173)
267 2bdt_A BH3686; alpha-beta prot 97.4 8.1E-05 2.8E-09 48.6 3.0 21 11-31 4-24 (189)
268 2pcj_A ABC transporter, lipopr 97.4 7.8E-05 2.7E-09 50.3 2.9 23 11-33 32-54 (224)
269 3fb4_A Adenylate kinase; psych 97.4 8.8E-05 3E-09 49.5 3.2 22 10-31 1-22 (216)
270 3kb2_A SPBC2 prophage-derived 97.4 8.3E-05 2.8E-09 47.6 3.0 21 11-31 3-23 (173)
271 1qhx_A CPT, protein (chloramph 97.4 0.00011 3.8E-09 47.4 3.5 23 10-32 4-26 (178)
272 1kht_A Adenylate kinase; phosp 97.4 9.7E-05 3.3E-09 48.1 3.3 23 9-31 3-25 (192)
273 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.3E-09 48.2 3.8 26 6-31 17-42 (201)
274 3dl0_A Adenylate kinase; phosp 97.4 9.5E-05 3.3E-09 49.3 3.2 22 10-31 1-22 (216)
275 2onk_A Molybdate/tungstate ABC 97.4 9.7E-05 3.3E-09 50.3 3.2 23 11-33 26-48 (240)
276 2i3b_A HCR-ntpase, human cance 97.4 9.3E-05 3.2E-09 48.6 3.0 22 11-32 3-24 (189)
277 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.9E-09 47.9 3.4 24 8-31 2-25 (196)
278 2bbw_A Adenylate kinase 4, AK4 97.4 0.00011 3.9E-09 50.1 3.5 22 9-30 27-48 (246)
279 1qf9_A UMP/CMP kinase, protein 97.4 0.00014 4.9E-09 47.3 3.8 23 9-31 6-28 (194)
280 2rcn_A Probable GTPase ENGC; Y 97.4 9.9E-05 3.4E-09 53.2 3.2 24 11-34 217-240 (358)
281 3gfo_A Cobalt import ATP-bindi 97.4 9.8E-05 3.3E-09 51.4 3.1 23 11-33 36-58 (275)
282 1sgw_A Putative ABC transporte 97.4 0.0001 3.5E-09 49.3 3.1 23 11-33 37-59 (214)
283 1b0u_A Histidine permease; ABC 97.4 0.0001 3.5E-09 50.9 3.1 23 11-33 34-56 (262)
284 2cbz_A Multidrug resistance-as 97.4 0.0001 3.5E-09 50.2 3.0 23 11-33 33-55 (237)
285 2eyu_A Twitching motility prot 97.4 9.8E-05 3.3E-09 51.0 3.0 22 10-31 26-47 (261)
286 2plr_A DTMP kinase, probable t 97.4 0.00015 5E-09 48.1 3.7 24 8-31 3-26 (213)
287 1ukz_A Uridylate kinase; trans 97.4 0.00019 6.6E-09 47.3 4.2 24 8-31 14-37 (203)
288 1zd8_A GTP:AMP phosphotransfer 97.4 0.00012 4.1E-09 49.3 3.2 23 9-31 7-29 (227)
289 4g1u_C Hemin import ATP-bindin 97.4 0.00011 3.8E-09 50.8 3.1 23 11-33 39-61 (266)
290 1g6h_A High-affinity branched- 97.4 0.00011 3.8E-09 50.5 3.0 23 11-33 35-57 (257)
291 3sr0_A Adenylate kinase; phosp 97.4 0.00013 4.6E-09 48.5 3.3 22 10-31 1-22 (206)
292 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5.2E-09 47.1 3.5 23 9-31 4-26 (186)
293 1gvn_B Zeta; postsegregational 97.3 0.00016 5.6E-09 50.6 3.8 25 7-31 31-55 (287)
294 2pze_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 49.5 3.1 23 11-33 36-58 (229)
295 2rhm_A Putative kinase; P-loop 97.3 0.00015 5.3E-09 47.3 3.5 23 9-31 5-27 (193)
296 2olj_A Amino acid ABC transpor 97.3 0.00012 4.2E-09 50.5 3.1 23 11-33 52-74 (263)
297 1mv5_A LMRA, multidrug resista 97.3 0.00014 4.6E-09 49.7 3.3 23 11-33 30-52 (243)
298 2ff7_A Alpha-hemolysin translo 97.3 0.00012 4.2E-09 50.1 3.0 23 11-33 37-59 (247)
299 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4.2E-09 48.3 3.0 22 10-31 19-40 (202)
300 3ec2_A DNA replication protein 97.3 0.00011 3.8E-09 47.6 2.7 24 9-32 38-61 (180)
301 1ji0_A ABC transporter; ATP bi 97.3 0.00013 4.3E-09 49.8 3.0 23 11-33 34-56 (240)
302 1vpl_A ABC transporter, ATP-bi 97.3 0.00013 4.4E-09 50.2 3.1 23 11-33 43-65 (256)
303 3tlx_A Adenylate kinase 2; str 97.3 0.00018 6.3E-09 49.0 3.8 24 8-31 28-51 (243)
304 3vaa_A Shikimate kinase, SK; s 97.3 0.00015 5E-09 47.8 3.2 22 10-31 26-47 (199)
305 2qi9_C Vitamin B12 import ATP- 97.3 0.00013 4.6E-09 49.9 3.1 23 11-33 28-50 (249)
306 1np6_A Molybdopterin-guanine d 97.3 0.00015 5E-09 47.0 3.0 22 11-32 8-29 (174)
307 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00014 4.9E-09 49.8 3.1 22 11-32 31-52 (250)
308 2v9p_A Replication protein E1; 97.3 0.00014 4.8E-09 51.3 3.1 23 9-31 126-148 (305)
309 2zu0_C Probable ATP-dependent 97.3 0.00015 5.2E-09 50.2 3.2 22 11-32 48-69 (267)
310 2ghi_A Transport protein; mult 97.3 0.00014 4.9E-09 50.1 3.0 22 11-32 48-69 (260)
311 2ihy_A ABC transporter, ATP-bi 97.3 0.00015 5.1E-09 50.5 3.1 23 11-33 49-71 (279)
312 2ixe_A Antigen peptide transpo 97.3 0.00015 5E-09 50.4 3.0 23 11-33 47-69 (271)
313 3b85_A Phosphate starvation-in 97.3 0.00011 3.6E-09 49.1 2.2 22 11-32 24-45 (208)
314 1nks_A Adenylate kinase; therm 97.3 0.00017 5.9E-09 47.0 3.2 21 11-31 3-23 (194)
315 2if2_A Dephospho-COA kinase; a 97.3 0.00016 5.5E-09 47.7 3.1 22 10-31 2-23 (204)
316 1u0l_A Probable GTPase ENGC; p 97.3 0.00018 6.2E-09 50.7 3.5 25 11-35 171-195 (301)
317 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.3E-09 47.8 3.0 24 9-32 25-48 (200)
318 2qt1_A Nicotinamide riboside k 97.3 0.00025 8.4E-09 47.0 4.0 25 8-32 20-44 (207)
319 2ehv_A Hypothetical protein PH 97.3 0.00016 5.6E-09 49.1 3.2 20 11-30 32-51 (251)
320 2jaq_A Deoxyguanosine kinase; 97.3 0.00017 5.9E-09 47.4 3.2 21 11-31 2-22 (205)
321 1e4v_A Adenylate kinase; trans 97.3 0.00016 5.5E-09 48.2 3.1 22 10-31 1-22 (214)
322 1cke_A CK, MSSA, protein (cyti 97.3 0.00018 6.1E-09 48.3 3.3 22 10-31 6-27 (227)
323 3co5_A Putative two-component 97.3 0.00054 1.9E-08 42.7 5.2 24 9-32 27-50 (143)
324 2nq2_C Hypothetical ABC transp 97.3 0.00016 5.6E-09 49.6 3.0 23 11-33 33-55 (253)
325 3umf_A Adenylate kinase; rossm 97.3 0.00028 9.5E-09 47.3 4.1 25 7-31 26-51 (217)
326 2yz2_A Putative ABC transporte 97.3 0.00017 5.8E-09 49.9 3.0 23 11-33 35-57 (266)
327 4a74_A DNA repair and recombin 97.2 0.00016 5.6E-09 48.5 2.9 22 11-32 27-48 (231)
328 3trf_A Shikimate kinase, SK; a 97.2 0.0002 6.7E-09 46.5 3.2 22 10-31 6-27 (185)
329 3aez_A Pantothenate kinase; tr 97.2 0.00025 8.6E-09 50.2 3.9 25 7-31 88-112 (312)
330 1aky_A Adenylate kinase; ATP:A 97.2 0.00021 7.3E-09 47.8 3.4 23 9-31 4-26 (220)
331 3lnc_A Guanylate kinase, GMP k 97.2 0.0001 3.5E-09 49.8 1.8 22 11-32 29-51 (231)
332 2yv5_A YJEQ protein; hydrolase 97.2 0.00027 9.2E-09 49.8 4.0 24 10-34 166-189 (302)
333 2vli_A Antibiotic resistance p 97.2 0.00012 4E-09 47.4 2.0 24 8-31 4-27 (183)
334 2wwf_A Thymidilate kinase, put 97.2 0.00026 8.9E-09 46.9 3.7 24 8-31 9-32 (212)
335 2yvu_A Probable adenylyl-sulfa 97.2 0.00032 1.1E-08 45.6 4.0 25 7-31 11-35 (186)
336 2pjz_A Hypothetical protein ST 97.2 0.00022 7.4E-09 49.3 3.3 23 11-33 32-54 (263)
337 1jjv_A Dephospho-COA kinase; P 97.2 0.00025 8.5E-09 46.9 3.4 22 10-31 3-24 (206)
338 2pt5_A Shikimate kinase, SK; a 97.2 0.00025 8.5E-09 45.2 3.2 21 11-31 2-22 (168)
339 2v54_A DTMP kinase, thymidylat 97.2 0.00028 9.5E-09 46.5 3.5 24 9-32 4-27 (204)
340 3jvv_A Twitching mobility prot 97.2 0.0002 7E-09 51.6 3.0 22 11-32 125-146 (356)
341 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00021 7.2E-09 51.5 3.0 24 11-34 32-55 (359)
342 2c95_A Adenylate kinase 1; tra 97.2 0.00028 9.6E-09 46.1 3.4 23 9-31 9-31 (196)
343 1zak_A Adenylate kinase; ATP:A 97.2 0.00025 8.5E-09 47.5 3.1 23 9-31 5-27 (222)
344 1lw7_A Transcriptional regulat 97.2 0.00019 6.4E-09 52.0 2.6 24 9-32 170-193 (365)
345 2xb4_A Adenylate kinase; ATP-b 97.2 0.00027 9.4E-09 47.5 3.2 22 10-31 1-22 (223)
346 2f1r_A Molybdopterin-guanine d 97.2 0.00011 3.7E-09 47.4 1.1 22 11-32 4-25 (171)
347 2p5t_B PEZT; postsegregational 97.2 0.00026 8.9E-09 48.5 3.1 25 7-31 30-54 (253)
348 1z47_A CYSA, putative ABC-tran 97.1 0.00026 8.9E-09 51.0 3.1 23 11-33 43-65 (355)
349 2x8a_A Nuclear valosin-contain 97.1 0.00025 8.6E-09 49.3 3.0 21 12-32 47-67 (274)
350 1jbk_A CLPB protein; beta barr 97.1 0.0003 1E-08 45.5 3.2 24 9-32 43-66 (195)
351 2jeo_A Uridine-cytidine kinase 97.1 0.00034 1.2E-08 47.7 3.6 24 8-31 24-47 (245)
352 2bbs_A Cystic fibrosis transme 97.1 0.00025 8.6E-09 49.7 2.9 22 11-32 66-87 (290)
353 1odf_A YGR205W, hypothetical 3 97.1 0.00044 1.5E-08 48.4 4.1 25 7-31 29-53 (290)
354 1uj2_A Uridine-cytidine kinase 97.1 0.00034 1.2E-08 47.9 3.5 25 7-31 20-44 (252)
355 2yyz_A Sugar ABC transporter, 97.1 0.00028 9.6E-09 50.9 3.1 23 11-33 31-53 (359)
356 1rj9_A FTSY, signal recognitio 97.1 0.00027 9.2E-09 49.9 3.0 23 9-31 102-124 (304)
357 3rlf_A Maltose/maltodextrin im 97.1 0.00029 9.9E-09 51.2 3.2 23 11-33 31-53 (381)
358 1uf9_A TT1252 protein; P-loop, 97.1 0.00037 1.3E-08 45.8 3.5 25 8-32 7-31 (203)
359 2it1_A 362AA long hypothetical 97.1 0.00029 1E-08 50.8 3.2 23 11-33 31-53 (362)
360 2ze6_A Isopentenyl transferase 97.1 0.00029 1E-08 48.3 3.1 21 11-31 3-23 (253)
361 3nh6_A ATP-binding cassette SU 97.1 0.00018 6.1E-09 50.8 2.0 23 10-32 81-103 (306)
362 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00028 9.4E-09 50.4 2.9 23 11-33 173-195 (330)
363 2kjq_A DNAA-related protein; s 97.1 0.00019 6.5E-09 45.2 1.8 23 10-32 37-59 (149)
364 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.2E-08 45.0 3.1 22 11-32 6-27 (169)
365 1ixz_A ATP-dependent metallopr 97.1 0.00031 1.1E-08 48.0 3.1 22 11-32 51-72 (254)
366 1rz3_A Hypothetical protein rb 97.1 0.00046 1.6E-08 45.6 3.8 24 8-31 21-44 (201)
367 2gza_A Type IV secretion syste 97.1 0.00047 1.6E-08 49.8 4.1 24 10-33 176-199 (361)
368 3tui_C Methionine import ATP-b 97.1 0.00032 1.1E-08 50.6 3.2 23 11-33 56-78 (366)
369 3b9q_A Chloroplast SRP recepto 97.1 0.00031 1.1E-08 49.5 3.0 23 9-31 100-122 (302)
370 3tqc_A Pantothenate kinase; bi 97.1 0.00045 1.6E-08 49.0 3.9 24 7-30 90-113 (321)
371 1v43_A Sugar-binding transport 97.1 0.00033 1.1E-08 50.8 3.2 23 11-33 39-61 (372)
372 1g29_1 MALK, maltose transport 97.1 0.00032 1.1E-08 50.9 3.1 23 11-33 31-53 (372)
373 2ewv_A Twitching motility prot 97.1 0.00032 1.1E-08 50.9 3.1 23 10-32 137-159 (372)
374 3be4_A Adenylate kinase; malar 97.1 0.00036 1.2E-08 46.6 3.1 22 10-31 6-27 (217)
375 1ak2_A Adenylate kinase isoenz 97.1 0.00042 1.5E-08 46.8 3.5 23 9-31 16-38 (233)
376 2bwj_A Adenylate kinase 5; pho 97.1 0.00038 1.3E-08 45.6 3.1 23 9-31 12-34 (199)
377 2pbr_A DTMP kinase, thymidylat 97.1 0.00039 1.3E-08 45.3 3.2 21 11-31 2-22 (195)
378 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00044 1.5E-08 47.6 3.5 22 10-31 5-26 (260)
379 1p9r_A General secretion pathw 97.0 0.00034 1.2E-08 51.5 3.0 22 11-32 169-190 (418)
380 2oap_1 GSPE-2, type II secreti 97.0 0.00035 1.2E-08 52.8 3.1 24 10-33 261-284 (511)
381 2iyv_A Shikimate kinase, SK; t 97.0 0.00039 1.3E-08 45.1 3.0 21 11-31 4-24 (184)
382 3d3q_A TRNA delta(2)-isopenten 97.0 0.00047 1.6E-08 49.3 3.5 22 10-31 8-29 (340)
383 1e6c_A Shikimate kinase; phosp 97.0 0.00043 1.5E-08 44.3 3.1 21 11-31 4-24 (173)
384 3r20_A Cytidylate kinase; stru 97.0 0.00046 1.6E-08 46.7 3.3 24 8-31 8-31 (233)
385 1sq5_A Pantothenate kinase; P- 97.0 0.0005 1.7E-08 48.5 3.6 24 8-31 79-102 (308)
386 3crm_A TRNA delta(2)-isopenten 97.0 0.00053 1.8E-08 48.7 3.7 22 10-31 6-27 (323)
387 4e22_A Cytidylate kinase; P-lo 97.0 0.0005 1.7E-08 47.1 3.5 21 10-30 28-48 (252)
388 2f6r_A COA synthase, bifunctio 97.0 0.00062 2.1E-08 47.5 3.9 23 8-30 74-96 (281)
389 2z0h_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 45.2 3.0 21 11-31 2-22 (197)
390 1in4_A RUVB, holliday junction 97.0 0.0004 1.4E-08 49.6 3.0 23 10-32 52-74 (334)
391 3d31_A Sulfate/molybdate ABC t 97.0 0.00026 9E-09 50.8 2.0 23 11-33 28-50 (348)
392 3gd7_A Fusion complex of cysti 97.0 0.00041 1.4E-08 50.6 3.0 21 11-31 49-69 (390)
393 1gtv_A TMK, thymidylate kinase 97.0 0.00016 5.4E-09 48.0 0.8 21 11-31 2-22 (214)
394 1vht_A Dephospho-COA kinase; s 97.0 0.00058 2E-08 45.6 3.5 23 9-31 4-26 (218)
395 3kta_A Chromosome segregation 97.0 0.00049 1.7E-08 44.5 3.0 21 11-31 28-48 (182)
396 1iy2_A ATP-dependent metallopr 97.0 0.00046 1.6E-08 47.9 3.1 22 11-32 75-96 (278)
397 2p65_A Hypothetical protein PF 97.0 0.00037 1.3E-08 44.9 2.4 24 9-32 43-66 (187)
398 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00048 1.7E-08 46.1 3.0 21 11-31 25-45 (235)
399 1zuh_A Shikimate kinase; alpha 97.0 0.00059 2E-08 43.5 3.2 21 11-31 9-29 (168)
400 2pez_A Bifunctional 3'-phospho 96.9 0.00069 2.3E-08 43.7 3.5 23 9-31 5-27 (179)
401 3bos_A Putative DNA replicatio 96.9 0.00057 2E-08 45.9 3.2 23 9-31 52-74 (242)
402 2og2_A Putative signal recogni 96.9 0.00051 1.8E-08 49.5 3.0 23 9-31 157-179 (359)
403 2w58_A DNAI, primosome compone 96.9 0.00066 2.3E-08 44.7 3.2 23 10-32 55-77 (202)
404 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00051 1.7E-08 51.2 2.9 24 10-33 139-162 (460)
405 4eaq_A DTMP kinase, thymidylat 96.9 0.00091 3.1E-08 45.2 3.9 25 8-32 25-49 (229)
406 1oxx_K GLCV, glucose, ABC tran 96.9 0.00027 9.1E-09 50.9 1.3 23 11-33 33-55 (353)
407 3t15_A Ribulose bisphosphate c 96.9 0.00093 3.2E-08 46.8 4.0 25 8-32 35-59 (293)
408 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0019 6.4E-08 47.9 5.7 21 10-30 68-88 (457)
409 3n70_A Transport activator; si 96.9 0.00073 2.5E-08 42.2 3.1 26 8-33 23-48 (145)
410 2yhs_A FTSY, cell division pro 96.9 0.00059 2E-08 51.1 3.1 23 9-31 293-315 (503)
411 2vp4_A Deoxynucleoside kinase; 96.9 0.00069 2.4E-08 45.7 3.2 25 8-32 19-43 (230)
412 1lv7_A FTSH; alpha/beta domain 96.9 0.0008 2.7E-08 46.1 3.5 24 9-32 45-68 (257)
413 1nij_A Hypothetical protein YJ 96.8 0.00047 1.6E-08 48.9 2.3 23 11-33 6-28 (318)
414 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00084 2.9E-08 42.2 3.2 19 12-30 26-44 (149)
415 2cvh_A DNA repair and recombin 96.8 0.00075 2.6E-08 44.9 3.0 21 11-31 22-42 (220)
416 3nwj_A ATSK2; P loop, shikimat 96.8 0.00075 2.6E-08 46.2 3.0 23 9-31 48-70 (250)
417 1cr0_A DNA primase/helicase; R 96.8 0.00068 2.3E-08 47.4 2.9 22 11-32 37-58 (296)
418 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.8E-08 44.0 3.8 23 9-31 25-47 (211)
419 1n0w_A DNA repair protein RAD5 96.8 0.00078 2.7E-08 45.5 3.1 22 11-32 26-47 (243)
420 1ltq_A Polynucleotide kinase; 96.8 0.00089 3.1E-08 46.9 3.4 22 10-31 3-24 (301)
421 2obl_A ESCN; ATPase, hydrolase 96.8 0.00087 3E-08 48.2 3.1 24 10-33 72-95 (347)
422 3syl_A Protein CBBX; photosynt 96.7 0.0012 4.1E-08 46.3 3.8 24 8-31 66-89 (309)
423 3zvl_A Bifunctional polynucleo 96.7 0.0016 5.6E-08 47.9 4.3 24 9-32 258-281 (416)
424 3a8t_A Adenylate isopentenyltr 96.7 0.0014 4.9E-08 46.7 3.9 22 11-32 42-63 (339)
425 1njg_A DNA polymerase III subu 96.7 0.00098 3.4E-08 44.6 3.0 21 11-31 47-67 (250)
426 2chg_A Replication factor C sm 96.7 0.001 3.6E-08 43.9 3.0 22 11-32 40-61 (226)
427 3h4m_A Proteasome-activating n 96.7 0.0012 4.1E-08 45.8 3.3 24 9-32 51-74 (285)
428 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.5E-08 48.3 3.0 23 9-31 169-191 (377)
429 2grj_A Dephospho-COA kinase; T 96.7 0.0014 4.7E-08 43.1 3.3 24 8-31 11-34 (192)
430 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0014 4.7E-08 44.8 3.5 23 9-31 39-61 (262)
431 3b9p_A CG5977-PA, isoform A; A 96.7 0.0012 4.1E-08 46.1 3.2 24 9-32 54-77 (297)
432 1d2n_A N-ethylmaleimide-sensit 96.7 0.0018 6E-08 44.7 4.0 26 7-32 62-87 (272)
433 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0016 5.6E-08 49.5 4.1 24 10-33 48-71 (538)
434 2qmh_A HPR kinase/phosphorylas 96.6 0.0013 4.4E-08 43.4 3.0 25 9-33 34-58 (205)
435 3foz_A TRNA delta(2)-isopenten 96.6 0.0017 5.9E-08 45.8 3.7 23 9-31 10-32 (316)
436 1tue_A Replication protein E1; 96.6 0.00098 3.4E-08 44.2 2.4 22 10-31 59-80 (212)
437 3euj_A Chromosome partition pr 96.6 0.0012 4E-08 49.5 3.1 21 11-31 31-51 (483)
438 2dpy_A FLII, flagellum-specifi 96.6 0.0012 4.2E-08 48.9 3.1 24 10-33 158-181 (438)
439 1nlf_A Regulatory protein REPA 96.6 0.0012 4.1E-08 45.8 2.9 21 11-31 32-52 (279)
440 3ake_A Cytidylate kinase; CMP 96.6 0.0017 5.7E-08 42.8 3.4 21 11-31 4-24 (208)
441 3cf0_A Transitional endoplasmi 96.6 0.0012 4.3E-08 46.3 2.9 24 9-32 49-72 (301)
442 3b60_A Lipid A export ATP-bind 96.6 0.0012 4.2E-08 50.7 3.1 23 11-33 371-393 (582)
443 1l8q_A Chromosomal replication 96.6 0.0013 4.3E-08 46.7 2.9 23 10-32 38-60 (324)
444 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0014 4.7E-08 47.5 3.2 19 12-30 26-44 (365)
445 2h92_A Cytidylate kinase; ross 96.6 0.0015 5E-08 43.5 3.1 23 9-31 3-25 (219)
446 3ozx_A RNAse L inhibitor; ATP 96.6 0.0017 5.9E-08 49.4 3.8 23 11-33 27-49 (538)
447 4fcw_A Chaperone protein CLPB; 96.6 0.0022 7.4E-08 45.0 4.1 23 10-32 48-70 (311)
448 3b5x_A Lipid A export ATP-bind 96.5 0.0019 6.5E-08 49.6 3.8 23 11-33 371-393 (582)
449 3j16_B RLI1P; ribosome recycli 96.5 0.002 6.7E-08 49.8 3.9 23 11-33 105-127 (608)
450 3v9p_A DTMP kinase, thymidylat 96.5 0.0013 4.5E-08 44.4 2.6 24 8-31 24-47 (227)
451 1ofh_A ATP-dependent HSL prote 96.5 0.0017 5.8E-08 45.5 3.2 23 9-31 50-72 (310)
452 2px0_A Flagellar biosynthesis 96.5 0.0015 5.1E-08 45.9 2.9 91 57-159 182-278 (296)
453 2qby_A CDC6 homolog 1, cell di 96.5 0.0015 5E-08 47.1 2.9 24 9-32 45-68 (386)
454 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7E-08 43.5 3.5 25 7-31 14-38 (236)
455 3gmt_A Adenylate kinase; ssgci 96.5 0.002 6.8E-08 43.5 3.2 24 8-31 7-30 (230)
456 1c9k_A COBU, adenosylcobinamid 96.5 0.0021 7.1E-08 41.7 3.2 21 12-32 2-22 (180)
457 3ld9_A DTMP kinase, thymidylat 96.5 0.0024 8.3E-08 42.9 3.6 28 4-31 16-43 (223)
458 2dr3_A UPF0273 protein PH0284; 96.5 0.0018 6.3E-08 43.7 3.0 21 11-31 25-45 (247)
459 1fnn_A CDC6P, cell division co 96.5 0.0019 6.5E-08 46.7 3.2 22 11-32 46-67 (389)
460 1vma_A Cell division protein F 96.5 0.0019 6.3E-08 45.6 3.1 92 58-161 187-290 (306)
461 3bk7_A ABC transporter ATP-bin 96.4 0.0027 9.1E-08 49.1 4.1 23 11-33 119-141 (607)
462 3exa_A TRNA delta(2)-isopenten 96.4 0.0026 8.8E-08 45.0 3.6 23 10-32 4-26 (322)
463 2yl4_A ATP-binding cassette SU 96.4 0.0013 4.4E-08 50.7 2.3 23 11-33 372-394 (595)
464 3ozx_A RNAse L inhibitor; ATP 96.4 0.0025 8.5E-08 48.5 3.8 24 11-34 296-319 (538)
465 1sxj_E Activator 1 40 kDa subu 96.4 0.0015 5.1E-08 46.7 2.5 20 12-31 39-58 (354)
466 3eie_A Vacuolar protein sortin 96.4 0.0022 7.5E-08 45.5 3.3 24 9-32 51-74 (322)
467 1sxj_C Activator 1 40 kDa subu 96.4 0.0019 6.4E-08 46.1 2.9 22 11-32 48-69 (340)
468 3qf4_B Uncharacterized ABC tra 96.4 0.0014 4.9E-08 50.5 2.4 24 10-33 382-405 (598)
469 3bk7_A ABC transporter ATP-bin 96.4 0.0027 9.3E-08 49.0 3.9 24 11-34 384-407 (607)
470 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.002 6.7E-08 45.8 2.9 23 10-32 46-68 (322)
471 1yqt_A RNAse L inhibitor; ATP- 96.4 0.003 1E-07 48.1 4.1 24 11-34 314-337 (538)
472 4dzz_A Plasmid partitioning pr 96.4 0.0059 2E-07 40.0 5.1 86 57-149 75-162 (206)
473 1pzn_A RAD51, DNA repair and r 96.4 0.002 6.7E-08 46.4 2.9 23 11-33 133-155 (349)
474 4a82_A Cystic fibrosis transme 96.4 0.0012 4.2E-08 50.7 1.9 23 11-33 369-391 (578)
475 3qks_A DNA double-strand break 96.4 0.0026 8.9E-08 42.1 3.2 19 12-30 26-44 (203)
476 1azs_C GS-alpha; complex (lyas 96.3 0.0026 8.7E-08 46.6 3.3 24 7-30 38-61 (402)
477 3qf4_A ABC transporter, ATP-bi 96.3 0.0017 5.7E-08 50.0 2.3 22 11-32 371-392 (587)
478 2v1u_A Cell division control p 96.3 0.002 6.8E-08 46.4 2.6 24 9-32 44-67 (387)
479 3uc9_A Increased recombination 96.3 0.011 3.6E-07 39.9 5.9 23 11-33 29-53 (233)
480 4b4t_K 26S protease regulatory 96.3 0.0024 8.1E-08 47.2 3.0 22 10-31 207-228 (428)
481 3hws_A ATP-dependent CLP prote 96.3 0.0029 1E-07 45.6 3.5 25 8-32 50-74 (363)
482 2qgz_A Helicase loader, putati 96.3 0.0028 9.5E-08 44.8 3.2 23 9-31 152-174 (308)
483 2ocp_A DGK, deoxyguanosine kin 96.3 0.0032 1.1E-07 42.6 3.4 24 9-32 2-25 (241)
484 3pfi_A Holliday junction ATP-d 96.3 0.0032 1.1E-07 44.8 3.6 24 9-32 55-78 (338)
485 3tqf_A HPR(Ser) kinase; transf 96.3 0.0033 1.1E-07 40.5 3.2 23 10-32 17-39 (181)
486 3uk6_A RUVB-like 2; hexameric 96.3 0.0026 8.9E-08 45.8 3.0 23 10-32 71-93 (368)
487 1um8_A ATP-dependent CLP prote 96.3 0.0031 1.1E-07 45.6 3.5 25 8-32 71-95 (376)
488 4b4t_M 26S protease regulatory 96.3 0.0033 1.1E-07 46.5 3.5 24 9-32 215-238 (434)
489 2qen_A Walker-type ATPase; unk 96.2 0.0027 9.3E-08 45.1 3.1 22 11-32 33-54 (350)
490 1p5z_B DCK, deoxycytidine kina 96.2 0.0021 7.2E-08 44.2 2.3 25 8-32 23-47 (263)
491 3j16_B RLI1P; ribosome recycli 96.2 0.0038 1.3E-07 48.2 3.9 24 12-35 381-404 (608)
492 1sxj_D Activator 1 41 kDa subu 96.2 0.0027 9.4E-08 45.3 3.0 22 11-32 60-81 (353)
493 4b4t_L 26S protease subunit RP 96.2 0.0028 9.6E-08 46.9 3.0 25 8-32 214-238 (437)
494 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0047 1.6E-07 44.4 4.1 23 9-31 24-46 (359)
495 2r62_A Cell division protease 96.2 0.0011 3.9E-08 45.5 0.9 21 11-31 46-66 (268)
496 3pxg_A Negative regulator of g 96.2 0.0026 9E-08 47.5 2.9 25 8-32 200-224 (468)
497 1a7j_A Phosphoribulokinase; tr 96.2 0.0015 5.2E-08 45.7 1.4 23 9-31 5-27 (290)
498 2fna_A Conserved hypothetical 96.2 0.003 1E-07 45.0 2.9 22 11-32 32-53 (357)
499 2bjv_A PSP operon transcriptio 96.2 0.0034 1.1E-07 43.1 3.0 25 9-33 29-53 (265)
500 2qby_B CDC6 homolog 3, cell di 96.2 0.0033 1.1E-07 45.4 3.1 23 10-32 46-68 (384)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.7e-45 Score=246.16 Aligned_cols=165 Identities=78% Similarity=1.161 Sum_probs=145.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+|++++||+++|++|+|||||++++..+.+...+.|+.+.++..+.....+..+++.+|||+|+++|..++..+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 45678999999999999999999999999999999999989888888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++|||+++++||+.+..|+..+.....+++|++||+||+|+.+.+.++.+++.++++++++.|++|||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999888888999999999999998899999999999999999999999999999999999
Q ss_pred cCCCC
Q 030880 165 LHPNT 169 (170)
Q Consensus 165 ~l~~~ 169 (170)
.|++.
T Consensus 169 ~i~~~ 173 (216)
T 4dkx_A 169 RVAAA 173 (216)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 2
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-38 Score=204.46 Aligned_cols=163 Identities=42% Similarity=0.760 Sum_probs=148.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+.+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 56899999999999999999999998877777888877777777888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc---cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
|||++++.+++.+..|+..+......+.|+++++||+|+.+. ..+..+++..+++..++.++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887778999999999999765 66788889999999999999999999999999999
Q ss_pred cCCCCC
Q 030880 165 LHPNTV 170 (170)
Q Consensus 165 ~l~~~i 170 (170)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 987754
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.1e-38 Score=210.33 Aligned_cols=164 Identities=36% Similarity=0.706 Sum_probs=145.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
.....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 34567999999999999999999999998877777777777777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777888999999999999999999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|.+
T Consensus 177 ~l~~ 180 (191)
T 2a5j_A 177 NTAK 180 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-38 Score=212.96 Aligned_cols=162 Identities=39% Similarity=0.645 Sum_probs=149.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777888899999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 184 ~~ 185 (201)
T 2ew1_A 184 AC 185 (201)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 5
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.8e-38 Score=204.88 Aligned_cols=163 Identities=39% Similarity=0.764 Sum_probs=149.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999998887777777777777777778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+.....++.|+++|+||+|+.++..+..+++..++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788889999999999999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 164 ~~~ 166 (170)
T 1r2q_A 164 AKK 166 (170)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
No 6
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.2e-37 Score=205.52 Aligned_cols=164 Identities=38% Similarity=0.696 Sum_probs=149.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988777777777777777777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998887678999999999999877788889999999999999999999999999999999
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 169 l~~~ 172 (181)
T 2efe_B 169 IARR 172 (181)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 7
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5e-38 Score=206.85 Aligned_cols=163 Identities=34% Similarity=0.647 Sum_probs=149.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 44579999999999999999999999988777777777777777777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++.++++||++|.|++++|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887778999999999999877778889999999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 172 l~~ 174 (179)
T 1z0f_A 172 AAK 174 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 8
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=8.7e-38 Score=205.72 Aligned_cols=164 Identities=80% Similarity=1.176 Sum_probs=150.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
++..+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888877788888788888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999877788889999999999999999999999999999999
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 171 l~~~ 174 (179)
T 2y8e_A 171 VAAA 174 (179)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=212.17 Aligned_cols=162 Identities=41% Similarity=0.725 Sum_probs=140.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 44689999999999999999999999887777777777777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++ .++++||++|.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887767899999999999987777888999999999999 9999999999999999999
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 187 l~~ 189 (201)
T 2hup_A 187 VAT 189 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.3e-38 Score=210.62 Aligned_cols=162 Identities=40% Similarity=0.705 Sum_probs=120.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45699999999999999999999998887777788887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777788899999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 166 ~~ 167 (183)
T 2fu5_C 166 AR 167 (183)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.3e-37 Score=206.92 Aligned_cols=162 Identities=37% Similarity=0.673 Sum_probs=147.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45689999999999999999999999887777777777777777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++.++++|+++|.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777788889999999999999999999999999999998
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 180 ~~ 181 (189)
T 2gf9_A 180 VD 181 (189)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=208.04 Aligned_cols=162 Identities=39% Similarity=0.684 Sum_probs=151.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 34689999999999999999999999988888888888888888888898899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877789999999999998888888899999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 174 ~~ 175 (196)
T 3tkl_A 174 AA 175 (196)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-37 Score=209.83 Aligned_cols=163 Identities=39% Similarity=0.644 Sum_probs=149.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34579999999999999999999999988877788888777777788888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999887778888999999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 165 l~~ 167 (206)
T 2bcg_Y 165 MAR 167 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 14
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-37 Score=207.54 Aligned_cols=163 Identities=36% Similarity=0.678 Sum_probs=149.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+....+.+||+||++++...+..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999999887777788877777777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++|+++|.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788899999999999999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 181 ~~~ 183 (192)
T 2fg5_A 181 SRQ 183 (192)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=9.4e-38 Score=206.95 Aligned_cols=162 Identities=35% Similarity=0.647 Sum_probs=148.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999999888777788877777777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..++.++++||++|.|++++|++|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999888776789999999999998777788889999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 168 ~~ 169 (186)
T 2bme_A 168 AR 169 (186)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 16
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.5e-37 Score=201.98 Aligned_cols=163 Identities=36% Similarity=0.674 Sum_probs=149.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.+.........+....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999887777788877777777788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..+++..+++..+++++++|+++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988767889999999999998877888889999999999999999999999999999998
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 164 ~~~ 166 (170)
T 1z0j_A 164 SRR 166 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.9e-38 Score=205.41 Aligned_cols=162 Identities=38% Similarity=0.657 Sum_probs=141.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45789999999999999999999999887777788877777777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+++.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999877766679999999999998877888899999999999999999999999999999998
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 164 ~~ 165 (170)
T 1z08_A 164 CK 165 (170)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.7e-38 Score=206.60 Aligned_cols=163 Identities=32% Similarity=0.414 Sum_probs=145.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+..+.+||+++|++|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 445679999999999999999999998888777777777555 6667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999999999877653 689999999999998888899999999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 161 ~~l~~ 165 (181)
T 3t5g_A 161 RRIIL 165 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.2e-37 Score=204.73 Aligned_cols=164 Identities=29% Similarity=0.489 Sum_probs=147.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+..+.+||+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345689999999999999999999999988877777776555 6667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecC-CCCChHHH
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKVC 162 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~ 162 (170)
+++|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..+++..+++++++|++ +|.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 999999999999999999999987654 4789999999999998888889999999999999999999999 99999999
Q ss_pred hhcCCCC
Q 030880 163 LMLHPNT 169 (170)
Q Consensus 163 ~~~l~~~ 169 (170)
|++|.+.
T Consensus 173 ~~~l~~~ 179 (183)
T 3kkq_A 173 FHDLVRV 179 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 20
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=3.4e-37 Score=204.94 Aligned_cols=165 Identities=34% Similarity=0.595 Sum_probs=147.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccchhhhcCCcE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~ 84 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999998887777887777777778888888999999999999988 888999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC---CChH
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK 160 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i~ 160 (170)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..++.++++|++++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999998775 478999999999999877788889999999999999999999999 9999
Q ss_pred HHhhcCCCCC
Q 030880 161 VCLMLHPNTV 170 (170)
Q Consensus 161 ~~~~~l~~~i 170 (170)
++|++|++.+
T Consensus 177 ~l~~~l~~~i 186 (189)
T 1z06_A 177 AIFMTLAHKL 186 (189)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=203.80 Aligned_cols=162 Identities=38% Similarity=0.662 Sum_probs=146.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34669999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++++++.+..|+..+.... .+.|+++|+||+|+.+...+...++..++...+++++++|+++|.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999987765 58999999999999888888889999999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 165 l~~ 167 (181)
T 3tw8_B 165 ITE 167 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=206.06 Aligned_cols=163 Identities=31% Similarity=0.624 Sum_probs=148.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999999988777777777777777777888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778889999999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 182 l~~ 184 (193)
T 2oil_A 182 VLK 184 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=208.37 Aligned_cols=165 Identities=35% Similarity=0.636 Sum_probs=142.0
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
.+....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 33456789999999999999999999998887777777777777777888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~ 162 (170)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.. ++.++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999988877678999999999999877788888899999885 789999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|.+
T Consensus 181 ~~~l~~ 186 (192)
T 2il1_A 181 FLKLVD 186 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 24
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.1e-37 Score=203.37 Aligned_cols=163 Identities=31% Similarity=0.455 Sum_probs=145.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
++...++|+++|++|+|||||+++|.++.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4567799999999999999999999999887777777765544 566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...++.++++|+++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999999885543 4689999999999998877888899999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 164 ~~l~~ 168 (181)
T 2fn4_A 164 EQLVR 168 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 25
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=208.24 Aligned_cols=162 Identities=35% Similarity=0.657 Sum_probs=138.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45689999999999999999999998887777777777777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..++.++++||++|.|++++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788889999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 183 ~~ 184 (200)
T 2o52_A 183 AR 184 (200)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-37 Score=202.26 Aligned_cols=163 Identities=39% Similarity=0.688 Sum_probs=139.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
....+||+++|++|+|||||+++|.++.+. ..+.++.+.+........++..+.+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998874 3556777777777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (170)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.++..+..+++..+++..+++++++||++|.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988778888899999999999999999999999999999
Q ss_pred cCCC
Q 030880 165 LHPN 168 (170)
Q Consensus 165 ~l~~ 168 (170)
+|.+
T Consensus 167 ~l~~ 170 (180)
T 2g6b_A 167 AIAK 170 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3e-37 Score=205.58 Aligned_cols=168 Identities=36% Similarity=0.608 Sum_probs=146.4
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEE-EEEEEECCe---------EEEEEEEeCCCccc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~ 70 (170)
|+..+....+||+++|++|+|||||+++|.++.+...+.++.+.+.. .......+. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 55455567799999999999999999999998887777777776666 445555554 78999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEE
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
+...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999887765 6899999999999987777888899999999999999
Q ss_pred EEecCCCCChHHHhhcCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~ 168 (170)
++|+++|.|++++|++|.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999998864
No 28
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6e-37 Score=205.81 Aligned_cols=162 Identities=35% Similarity=0.639 Sum_probs=148.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35689999999999999999999999887777777777777777778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+...+..+++..+++..+++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777888899999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 166 ~~ 167 (203)
T 1zbd_A 166 VD 167 (203)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=207.78 Aligned_cols=164 Identities=25% Similarity=0.349 Sum_probs=139.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cchhhhcCCc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSS 83 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 83 (170)
+....+||+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||++|++.+.. ++..+++++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999976443323344445556666677888899999999999988765 7788899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999999877654 57999999999999877778888999999999999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|++
T Consensus 179 f~~l~~ 184 (195)
T 3cbq_A 179 FEGAVR 184 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 30
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=205.56 Aligned_cols=162 Identities=25% Similarity=0.394 Sum_probs=139.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+....+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++++... ..+++++|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988777777776444 455667888899999999999988775 678999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec-CCCCChH
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNIK 160 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i~ 160 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++..++.++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999987764 257999999999999877888889999999999999999999 8999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|++
T Consensus 175 ~lf~~l~~ 182 (187)
T 3c5c_A 175 HVFHEAVR 182 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.8e-37 Score=200.76 Aligned_cols=161 Identities=35% Similarity=0.622 Sum_probs=146.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999999887777888777777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++|+++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999987766 679999999999998777788889999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 162 ~~ 163 (168)
T 1z2a_A 162 AE 163 (168)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.3e-37 Score=201.41 Aligned_cols=160 Identities=39% Similarity=0.731 Sum_probs=139.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998877777777777777777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887678999999999999 4556778889999999999999999999999999999886
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 161 ~ 161 (170)
T 1g16_A 161 K 161 (170)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.8e-37 Score=204.15 Aligned_cols=163 Identities=32% Similarity=0.485 Sum_probs=143.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+...+ ..+.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999887766677777677777777766 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCe-EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
+++|||++++++++.+..|+..+..... .+.| +++|+||+|+.+.+.+..+++..+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988876532 2345 899999999987777888899999999999999999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|.+
T Consensus 163 l~~~l~~ 169 (178)
T 2hxs_A 163 CFQKVAA 169 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 34
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-38 Score=210.40 Aligned_cols=163 Identities=35% Similarity=0.647 Sum_probs=149.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35689999999999999999999998887777777777777777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++|+++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998888888999999999999999999999999999999988
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 181 ~~~ 183 (191)
T 3dz8_A 181 VDA 183 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 35
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-37 Score=209.68 Aligned_cols=162 Identities=35% Similarity=0.653 Sum_probs=139.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45689999999999999999999999887777788777777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777788889999999999999999999999999999987
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 171 ~~ 172 (223)
T 3cpj_B 171 IN 172 (223)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 36
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.6e-37 Score=199.75 Aligned_cols=161 Identities=29% Similarity=0.505 Sum_probs=142.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+.+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 568999999999999999999999888777777766443 4556667788899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhc
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 165 (170)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.. +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999999887764 368999999999999887778889999999887 789999999999999999999
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 161 l~~~ 164 (167)
T 1c1y_A 161 LVRQ 164 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=207.80 Aligned_cols=164 Identities=40% Similarity=0.646 Sum_probs=135.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
.....+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34557999999999999999999999998877777777777777777888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999887766789999999999996 3456778889999999999999999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|++|++
T Consensus 184 v~el~~~l~~ 193 (199)
T 2p5s_A 184 IVEAVLHLAR 193 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.4e-36 Score=199.81 Aligned_cols=163 Identities=37% Similarity=0.609 Sum_probs=142.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
+....++|+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34567999999999999999999999998877778888878777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCCCh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNI 159 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i 159 (170)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.++++ ..+++++++|+++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999999877654 678999999999996 55677888888888 66789999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|++|.+
T Consensus 162 ~~l~~~l~~ 170 (177)
T 1wms_A 162 AAAFEEAVR 170 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 39
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-37 Score=204.58 Aligned_cols=167 Identities=26% Similarity=0.440 Sum_probs=144.0
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 80 (170)
|+.++....+||+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 4455556779999999999999999999999988777777765333 445666777889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-
Q 030880 81 DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV- 146 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~- 146 (170)
++|++++|||++++++++.+. .|+..+.... +++|+++|+||+|+.+. +.+..+++..+++..++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 7888887764 47999999999999753 35778899999999998
Q ss_pred eEEEEecCCCCChHHHhhcCCCC
Q 030880 147 MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.++++||++|.|++++|++|.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988653
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=6.7e-37 Score=199.89 Aligned_cols=161 Identities=25% Similarity=0.367 Sum_probs=130.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cchhhhcCCcEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV 87 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 87 (170)
.+||+++|++|+|||||++++.+........++.+.+........++..+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776655555556677777777889999999999999998876 77788999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999987764 589999999999998888889999999999999999999999999999999988
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 162 ~~~ 164 (169)
T 3q85_A 162 VRQ 164 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=207.25 Aligned_cols=164 Identities=31% Similarity=0.428 Sum_probs=139.9
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
++....+||+++|.+|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3456789999999999999999999999988877777776554 555666777889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++|||++++++++.+..|+..+..... .++|+++|+||+|+.+...+...++..+++..+++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999876643 57899999999999888888999999999999999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|.+
T Consensus 178 ~~~l~~ 183 (201)
T 3oes_A 178 FTKVIQ 183 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.1e-36 Score=198.42 Aligned_cols=161 Identities=32% Similarity=0.557 Sum_probs=140.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
++.+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3579999999999999999999999887776666665333 445567888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887764 58999999999999877778889999999999999999999999999999999
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 161 l~~ 163 (168)
T 1u8z_A 161 LMR 163 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 43
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.4e-36 Score=201.29 Aligned_cols=159 Identities=18% Similarity=0.298 Sum_probs=138.5
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
+...+.+||+++|++|+|||||+++++++.+...+.++. ..+...+.+++..+.+.+|||+|++.+. +++++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 445678999999999999999999999998877666663 3345677788999999999999998776 788999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhcC-CeEEEEecCCCCCh
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i 159 (170)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.++++..+ +.|+++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987654 679999999999994 456788899999999997 89999999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|++.
T Consensus 168 ~~lf~~l~~~ 177 (184)
T 3ihw_A 168 ERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.4e-37 Score=207.39 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=141.1
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
.+....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||++|++++..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456689999999999999999999999998888778877554 455667788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEE
Q 030880 84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI 149 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 149 (170)
++++|||++++++++. +..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++..++ .|+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 789999988775 68999999999999753 56889999999999999 999
Q ss_pred EEecCCCCC-hHHHhhcCCC
Q 030880 150 ETSAKAGFN-IKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~-i~~~~~~l~~ 168 (170)
+|||++|.| ++++|++|.+
T Consensus 180 e~SA~~g~g~v~~lf~~l~~ 199 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASM 199 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHH
T ss_pred EeccCCCcccHHHHHHHHHH
Confidence 999999998 9999998864
No 45
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-36 Score=203.49 Aligned_cols=166 Identities=32% Similarity=0.444 Sum_probs=142.5
Q ss_pred CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC
Q 030880 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (170)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 81 (170)
..+.....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++. ...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 345566789999999999999999999999988777777766443 55566788889999999999988 7788889999
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC-Ch
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI 159 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i 159 (170)
+|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|. |+
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 9999999999999999999999998877653 689999999999998777888899999999999999999999999 99
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|++.
T Consensus 179 ~~l~~~l~~~ 188 (196)
T 2atv_A 179 TEIFYELCRE 188 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.6e-36 Score=201.47 Aligned_cols=161 Identities=32% Similarity=0.502 Sum_probs=141.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34579999999999999999999999988777777776444 44566788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc--cccCHHHHHHHHhhcCCe-EEEEecCCCCChHH
Q 030880 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKV 161 (170)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~ 161 (170)
++|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++..++. ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 67888777654 67999999999999753 667889999999999997 99999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|.+
T Consensus 178 l~~~l~~ 184 (194)
T 3reg_A 178 VFEKSVD 184 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=9.1e-37 Score=198.57 Aligned_cols=160 Identities=33% Similarity=0.514 Sum_probs=143.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+++||+++|++|+|||||++++.++.+...+.++.+ +.........+....+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 568999999999999999999999888777666665 4445667778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..+++..+++..+++++++|+++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999998877653 689999999999998777888889999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 161 ~~ 162 (167)
T 1kao_A 161 VR 162 (167)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.1e-36 Score=200.40 Aligned_cols=163 Identities=32% Similarity=0.545 Sum_probs=143.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
..+..+||+++|++|+|||||+++|.++.+...+.++.... ........+..+.+.+||+||++++...+..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 34567999999999999999999999988877766666533 34556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++|+++|.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887764 589999999999998777788899999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 173 ~~l~~ 177 (187)
T 2a9k_A 173 FDLMR 177 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=202.44 Aligned_cols=163 Identities=32% Similarity=0.555 Sum_probs=144.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
++...++|+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999888777777766333 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887753 589999999999998877788899999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 169 ~~l~~ 173 (206)
T 2bov_A 169 FDLMR 173 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 50
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-36 Score=200.79 Aligned_cols=161 Identities=39% Similarity=0.687 Sum_probs=145.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999999888777888877887777888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+. ...+..+++..+++..++.++++|+++|.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999877653 579999999999994 4567788899999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 172 l~~ 174 (195)
T 1x3s_A 172 LVE 174 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.1e-36 Score=200.80 Aligned_cols=161 Identities=37% Similarity=0.663 Sum_probs=141.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeE---------------------------
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------------------- 57 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 57 (170)
+....+||+++|++|+|||||+++|+++.+...+.++.+.+.....+...+..
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 44567999999999999999999999998887777777767766666655544
Q ss_pred ----------EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 58 ----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 58 ----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
..+.+||+||++.+...+..+++++|++++|||++++.+++.+..|+..+..... .|+++|+||+| .
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-K 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-C
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-c
Confidence 8999999999999999999999999999999999999999999999999877653 99999999999 5
Q ss_pred CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
....+..+++.++++..+++++++||++|.|++++|++|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 56677889999999999999999999999999999998864
No 52
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.2e-36 Score=197.77 Aligned_cols=158 Identities=20% Similarity=0.359 Sum_probs=133.7
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
|...+.+||+++|++|+|||||++++.++.+.. +.++.+ +.....+..++..+.+.+||+||+++ ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 345678999999999999999999999988775 566665 44456677788889999999999876 46788999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCC
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF 157 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 157 (170)
++++|||++++++++.+..|+..+.... ..++|+++|+||+|+. ..+.+..+++.++++.. +++++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999999876665543 2679999999999994 45667888899998876 6899999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|++|++
T Consensus 155 ~i~~lf~~l~~ 165 (178)
T 2iwr_A 155 NVDRVFQEVAQ 165 (178)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 53
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.8e-36 Score=201.87 Aligned_cols=162 Identities=38% Similarity=0.652 Sum_probs=143.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....++|+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999988877788887788787787888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCCChH
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~ 160 (170)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998877653 478999999999997 45567788888887 677899999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 164 ~l~~~l~~ 171 (207)
T 1vg8_A 164 QAFQTIAR 171 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-36 Score=202.44 Aligned_cols=161 Identities=40% Similarity=0.722 Sum_probs=145.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++|+++|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999998887777788877777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..+++..++...+++++++|+++|.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998877678999999999999 556677888899999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 177 ~~ 178 (213)
T 3cph_A 177 AK 178 (213)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.1e-36 Score=199.55 Aligned_cols=163 Identities=37% Similarity=0.602 Sum_probs=129.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
....++|+++|++|+|||||++++.++.+...+.++.+.+.....+..+ +....+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999998877777777767766666666 556899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC-ccccCHHHHHHHHh-hcCCeEEEEecCCCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~ 158 (170)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..+++ ..+++++++|+++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999999877653 6789999999999954 34567888888888 5678999999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|++|.+
T Consensus 165 i~~l~~~l~~ 174 (182)
T 1ky3_A 165 VDTAFEEIAR 174 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=197.18 Aligned_cols=161 Identities=33% Similarity=0.424 Sum_probs=130.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccchhhhcCCcE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~ 84 (170)
...+||+++|++|+|||||+++|.++.+...+ ++.+.+........++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35689999999999999999999988765443 3344466666677888889999999999887 55667788899999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
+++|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3579999999999998777888888999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 161 ~~l~~ 165 (175)
T 2nzj_A 161 EGVVR 165 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 57
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-36 Score=205.02 Aligned_cols=164 Identities=32% Similarity=0.508 Sum_probs=140.7
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
+|+....+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++..++..+++++
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 4566778999999999999999999999988877777776633 345566778889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc--------cCHHHHHHHHhhcCC-eEEEEe
Q 030880 83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s 152 (170)
|++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+... +..+++..++...++ .++++|
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 9999999999999999986 7988887765 5799999999999976543 377889999999996 999999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|++|++
T Consensus 161 a~~g~gi~~l~~~l~~ 176 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIK 176 (212)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998864
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.9e-36 Score=195.26 Aligned_cols=158 Identities=30% Similarity=0.411 Sum_probs=119.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 88 (170)
.+||+++|++|+|||||++++.+...... .++.+.+. .......+..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665432 33333232 45567788899999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999987754 36899999999999988888899999999999999999999999999999999886
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 160 ~ 160 (166)
T 3q72_A 160 R 160 (166)
T ss_dssp H
T ss_pred H
Confidence 5
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.5e-36 Score=205.84 Aligned_cols=162 Identities=37% Similarity=0.630 Sum_probs=143.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe----------EEEEEEEeCCCcccccccch
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLIP 76 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~ 76 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.++....+...+. .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45689999999999999999999998887777777776766666666655 78999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
.+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..++.++++|+++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 999999999999999999999999999888766543 6799999999999987777888999999999999999999999
Q ss_pred CCChHHHhhcCCC
Q 030880 156 GFNIKVCLMLHPN 168 (170)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (170)
|.|++++|++|.+
T Consensus 183 g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 183 GQNVEKAVETLLD 195 (217)
T ss_dssp TBTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
No 60
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-35 Score=194.05 Aligned_cols=161 Identities=29% Similarity=0.456 Sum_probs=140.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887766666665333 3445667888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+...++..++...+++++++|+++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888876543 57999999999999877778888899999999999999999999999999999
Q ss_pred CCCC
Q 030880 166 HPNT 169 (170)
Q Consensus 166 l~~~ 169 (170)
|.+.
T Consensus 161 l~~~ 164 (172)
T 2erx_A 161 LLNL 164 (172)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8654
No 61
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=211.00 Aligned_cols=164 Identities=38% Similarity=0.682 Sum_probs=139.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 34689999999999999999999998888777788877888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999977766789999999999998777777777889999999999999999999999999999
Q ss_pred CCCC
Q 030880 167 PNTV 170 (170)
Q Consensus 167 ~~~i 170 (170)
.+.+
T Consensus 191 ~~~l 194 (199)
T 3l0i_B 191 AAEI 194 (199)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8764
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=198.99 Aligned_cols=161 Identities=33% Similarity=0.486 Sum_probs=133.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45679999999999999999999999887777677765 44455666788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEE
Q 030880 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+. ..+..+++..+++..++ .++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999986 7988887765 58999999999999652 45678889999999897 99999
Q ss_pred ecCCCCChHHHhhcCCC
Q 030880 152 SAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~ 168 (170)
||++|.|++++|++|.+
T Consensus 175 Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIV 191 (201)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999998864
No 63
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.2e-36 Score=204.36 Aligned_cols=164 Identities=29% Similarity=0.474 Sum_probs=140.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
.....+||+++|++|+|||||+++|+++.+...+.++.+........... +..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34567999999999999999999999888777666776656555555443 34489999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+++..++...++.++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988877779999999999998777888899999999999999999999999999999
Q ss_pred hcCCC
Q 030880 164 MLHPN 168 (170)
Q Consensus 164 ~~l~~ 168 (170)
++|.+
T Consensus 167 ~~l~~ 171 (218)
T 4djt_A 167 LHLAR 171 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.1e-35 Score=195.97 Aligned_cols=160 Identities=29% Similarity=0.509 Sum_probs=139.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+++||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3578999999999999999999999888777666664 555666778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+. ......+++..+++..+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887653 689999999999986 4556778899999999999999999999999999998
Q ss_pred CCC
Q 030880 166 HPN 168 (170)
Q Consensus 166 l~~ 168 (170)
|.+
T Consensus 160 l~~ 162 (189)
T 4dsu_A 160 LVR 162 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=6.5e-37 Score=206.14 Aligned_cols=162 Identities=28% Similarity=0.474 Sum_probs=107.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEECCe--EEEEEEEeCCCcccccccchhhhcCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
...++|+++|++|+|||||+++|.++ .+...+.++.+.+.....+..++. .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999998 666666777766677777777776 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-ccccCHHHHHHHHhhcCCeEEEEecCC-CC
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF 157 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 157 (170)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..+++..++.++++|+++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988775 6899999999999987 677888999999999999999999999 99
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|++|.+
T Consensus 178 gi~~l~~~i~~ 188 (208)
T 2yc2_C 178 DADAPFLSIAT 188 (208)
T ss_dssp --CHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.3e-35 Score=196.17 Aligned_cols=163 Identities=28% Similarity=0.503 Sum_probs=130.8
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
.+.+..++|+++|.+|+|||||+++|.++.+...+.++.+ +.........+..+.+.+||+||++++...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3456789999999999999999999999887766666655 334456667888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....+++.++++..+++++++|+++|.|++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998877653 5799999999999865 556788899999999999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|.+
T Consensus 174 ~~~l~~ 179 (190)
T 3con_A 174 FYTLVR 179 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=7.8e-36 Score=197.61 Aligned_cols=161 Identities=24% Similarity=0.473 Sum_probs=138.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777777766444 44566778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEE
Q 030880 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET 151 (170)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (170)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.++ +.++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888887664 57999999999999642 4577888999999888 699999
Q ss_pred ecC-CCCChHHHhhcCCC
Q 030880 152 SAK-AGFNIKVCLMLHPN 168 (170)
Q Consensus 152 s~~-~~~~i~~~~~~l~~ 168 (170)
||+ ++.|++++|+++.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATL 179 (184)
T ss_dssp BTTTBHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHH
Confidence 999 68999999998865
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.4e-35 Score=196.32 Aligned_cols=160 Identities=31% Similarity=0.499 Sum_probs=139.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+..+||+++|++|+|||||++++.++.+...+.++.. +.........+..+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777666665 334555677888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++..++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 6888887765 48999999999998653 45678889999999997 999999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|++|.+
T Consensus 161 a~~g~gi~~l~~~l~~ 176 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIR 176 (186)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHH
Confidence 9999999999998764
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-36 Score=200.89 Aligned_cols=162 Identities=29% Similarity=0.406 Sum_probs=134.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccchhhhcCC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDS 82 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 82 (170)
....+||+++|++|+|||||++++.+... ... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34569999999999999999999996432 333 23455566667777888889999999999876 455667778899
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
+++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988876543 35799999999999987777888888899999999999999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|++
T Consensus 193 lf~~l~~ 199 (211)
T 2g3y_A 193 LFEGIVR 199 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 70
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-35 Score=200.06 Aligned_cols=160 Identities=24% Similarity=0.476 Sum_probs=138.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4579999999999999999999999988777777776444 445666777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEe
Q 030880 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 152 (170)
+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++.++ +.++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 78988887664 57999999999999642 4577888999999888 6999999
Q ss_pred cC-CCCChHHHhhcCCC
Q 030880 153 AK-AGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~-~~~~i~~~~~~l~~ 168 (170)
|+ ++.|++++|++|++
T Consensus 184 Ak~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATL 200 (205)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHH
Confidence 99 68999999998865
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.8e-35 Score=198.94 Aligned_cols=163 Identities=30% Similarity=0.486 Sum_probs=139.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....+||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++++...+..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777667665 55566667788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc------------cCHHHHHHHHhhcCC-eEEEE
Q 030880 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------------VSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... +..+++..+++..++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999987 7888887765 6899999999999975532 778889999999997 69999
Q ss_pred ecCCCCChHHHhhcCCCCC
Q 030880 152 SAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~~i 170 (170)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999987653
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=200.50 Aligned_cols=160 Identities=31% Similarity=0.524 Sum_probs=120.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999887766666665 444555677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||++++++++.+. .|+..+.... .++|+++|+||+|+.+.. .+..+++..+++..++ .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888887664 679999999999997643 5677889999999998 999999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|++|.+
T Consensus 190 A~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAE 205 (214)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998864
No 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-35 Score=196.33 Aligned_cols=163 Identities=29% Similarity=0.448 Sum_probs=139.7
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
++....++|+++|++|+|||||+++|.++.+...+.++.+.. .......++..+.+.+||+||++++...+..+++++|
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 345567999999999999999999999988876666666533 3445567788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...++.++++||++|.|+++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 99999999999999999988887766543 4789999999999964 55677888999999999999999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
+|++|.+
T Consensus 161 l~~~l~~ 167 (199)
T 2gf0_A 161 LFQELLT 167 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.2e-35 Score=189.60 Aligned_cols=159 Identities=28% Similarity=0.499 Sum_probs=139.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
+.+||+++|++|+|||||++++.++.+...+.++.+ +.........+..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 468999999999999999999999887766666655 3345556678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....+++.++++..+++++++|+++|.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999877653 5799999999999865 4567788999999999999999999999999999988
Q ss_pred CC
Q 030880 167 PN 168 (170)
Q Consensus 167 ~~ 168 (170)
.+
T Consensus 160 ~~ 161 (166)
T 2ce2_X 160 VR 161 (166)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.8e-36 Score=200.03 Aligned_cols=163 Identities=34% Similarity=0.523 Sum_probs=124.8
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
++....+||+++|++|+|||||++++..+.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 4456779999999999999999999999887766666655332 333445566778899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc----------cCHHHHHHHHhhcCC-eEEEE
Q 030880 84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIET 151 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 151 (170)
++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+... +..+++..+++..++ +++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 6888887765 4799999999999876544 477888999999997 99999
Q ss_pred ecCCCCChHHHhhcCCC
Q 030880 152 SAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~ 168 (170)
||++|.|++++|++|.+
T Consensus 161 Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIR 177 (182)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999998865
No 76
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=7e-35 Score=195.60 Aligned_cols=160 Identities=32% Similarity=0.539 Sum_probs=139.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.+.+.. .....++..+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 34689999999999999999999999887777777664443 34567888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++..++ .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67877776654 57999999999999764 45778889999999998 999999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|++|.+
T Consensus 181 A~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 181 AKTKEGVREVFEMATR 196 (201)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998865
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=5.4e-36 Score=203.71 Aligned_cols=163 Identities=27% Similarity=0.544 Sum_probs=142.8
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
.......+||+++|.+|+|||||+++++.+.+...+.++.+.+.........+..+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34556789999999999999999999887776666677777788787788888999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... . .+...+++..++.++++|+++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998775 5799999999999965443 2 3566778888999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|.+
T Consensus 166 ~~~l~~ 171 (221)
T 3gj0_A 166 FLWLAR 171 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-35 Score=195.77 Aligned_cols=160 Identities=31% Similarity=0.527 Sum_probs=133.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
+..+||+++|++|+|||||+++|.++.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999998887776676664443 34567888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..++...++ .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67888777654 57999999999999654 45677888999999998 999999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
|++|.|++++|++|.+
T Consensus 181 A~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 181 AKTKEGVREVFETATR 196 (207)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998864
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.2e-35 Score=198.45 Aligned_cols=161 Identities=22% Similarity=0.224 Sum_probs=132.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-----------ccceeeeEEEEEEE-EECCeEEEEEEEeCCCccccc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFR 72 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 72 (170)
.....+||+++|++|+|||||++.+.+. +... +.++.+.+...... ..++..+.+.+|||||++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456799999999999999999766654 3333 23455445544444 556778899999999999999
Q ss_pred ccchhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880 73 SLIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (170)
..+..+++++|++++|||++ +.++++.+..|+..+. ....++|+++|+||+|+.+. +..+++.++++..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 5677888888888773 23378999999999999654 778899999999999
Q ss_pred -eEEEEecCCCCChHHHhhcCCCC
Q 030880 147 -MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 147 -~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.++++||++|.|++++|++|.+.
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHH
Confidence 99999999999999999998653
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3e-34 Score=191.27 Aligned_cols=161 Identities=29% Similarity=0.447 Sum_probs=132.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccchhhhcCCc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 83 (170)
...+||+++|++|+|||||++++.+.. +...+ ++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456899999999999999999999632 23332 3344566666777888889999999999776 4557778889999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988887653 357999999999999776777888888888889999999999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|++|++
T Consensus 163 f~~l~~ 168 (192)
T 2cjw_A 163 FEGIVR 168 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 81
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=9.9e-34 Score=189.60 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=123.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987764 344554433 23344455 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-----------------cCCeE
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF 148 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (170)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+ .+..+++.+++.. .++.+
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998887653 36799999999999965 4567777777653 34689
Q ss_pred EEEecCCCCChHHHhhcCCCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~i 170 (170)
++|||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998764
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.2e-34 Score=193.85 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=124.7
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 82 (170)
.++....||+++|++|+|||||+++|.++.+.. .+.++.+..... + ....+.+.+|||||++++...+..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 445677999999999999999999999998877 666776643332 2 34557899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCcccc---CHHHHH-HHHhhcCCeEEE
Q 030880 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQV---SIEEGE-AKSRELNVMFIE 150 (170)
Q Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~~~~ 150 (170)
|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.... ...... .+++..++.+++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 999999999999999999999888765421 27999999999999765321 111111 122557789999
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+||++|.|++++|++|.+
T Consensus 168 ~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp CBTTTTBTHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHH
Confidence 999999999999999865
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=3.1e-33 Score=186.06 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=128.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ +.+.+||+||++++...+..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 35689999999999999999999988764 344555433 33444554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh------------cCCeEEEEec
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (170)
+|||++++++++....|+..+.... ..+.|+++|+||+|+.+ .+..+++.+.... .++.++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998886643 36799999999999965 4566677666543 3568999999
Q ss_pred CCCCChHHHhhcCCCCC
Q 030880 154 KAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~~i 170 (170)
++|.|++++|++|.+.+
T Consensus 174 ~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=2.4e-33 Score=185.20 Aligned_cols=159 Identities=20% Similarity=0.305 Sum_probs=124.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 84 (170)
...+.+||+++|++|+|||||+++|.++.+ ..+.++.+... ..+...+ ..+.+||+||++++...+..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345679999999999999999999999877 34445544332 2333333 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (170)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~ 158 (170)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. ...++.++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999988876643 367999999999999653 3334444433 23456899999999999
Q ss_pred hHHHhhcCCCCC
Q 030880 159 IKVCLMLHPNTV 170 (170)
Q Consensus 159 i~~~~~~l~~~i 170 (170)
++++|++|.+.+
T Consensus 170 i~~l~~~l~~~l 181 (181)
T 2h17_A 170 LCQGLEWMMSRL 181 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=184.37 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=127.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
...+||+++|++|+|||||+++|.++. +...+.++.+. ....+..+ +..+.+||+||++++...+..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 467999999999999999999999887 45555555553 33334444 36899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCC
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGF 157 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 157 (170)
++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..++.++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999999988877643 57999999999999643 34555665553 246789999999999
Q ss_pred ChHHHhhcCCCC
Q 030880 158 NIKVCLMLHPNT 169 (170)
Q Consensus 158 ~i~~~~~~l~~~ 169 (170)
|++++|++|.+.
T Consensus 173 gi~~l~~~l~~~ 184 (190)
T 2h57_A 173 GLQEGVDWLQDQ 184 (190)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998653
No 86
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.9e-32 Score=183.43 Aligned_cols=161 Identities=35% Similarity=0.676 Sum_probs=142.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 35899999999999999999999988877777777777777778888888999999999999999899999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|||+++..+++.+..|+..+......+.|+++++||+|+.+...+...++..++...++.++++|++++.|++++|++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998888766556799999999999987777788889999999999999999999999999999876
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 164 ~ 164 (199)
T 2f9l_A 164 T 164 (199)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=4.9e-34 Score=189.60 Aligned_cols=157 Identities=24% Similarity=0.354 Sum_probs=127.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||+++|.++.+...+.++.+.+... +. ...+.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 357999999999999999999999988876667776655432 22 33578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...++.++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999988876643 2679999999999996542 223322221 1335689999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 174 ~l~~~l~~~ 182 (188)
T 1zd9_A 174 ITLQWLIQH 182 (188)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998764
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=5e-34 Score=190.21 Aligned_cols=157 Identities=20% Similarity=0.336 Sum_probs=118.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
..+.+||+++|++|+|||||++++..+.+. .+.|+.+. ....+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 456799999999999999999999988765 33454442 2223333 347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHH-----HhhcCCeEEEEecCCCCCh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i 159 (170)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988876543 3579999999999996542 22222222 2234568999999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|++.
T Consensus 179 ~~l~~~l~~~ 188 (192)
T 2b6h_A 179 YDGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=100.00 E-value=2.4e-32 Score=181.91 Aligned_cols=163 Identities=34% Similarity=0.655 Sum_probs=146.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++++++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34589999999999999999999999887777888887877788888898889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (170)
+|||.++..+++.+..|+..+......+.|+++++||+|+.+.......++..++.+.++.++.+|++++.|++++|++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999889888776655678999999999998777778889999999999999999999999999999988
Q ss_pred CCC
Q 030880 167 PNT 169 (170)
Q Consensus 167 ~~~ 169 (170)
.+.
T Consensus 187 ~~~ 189 (191)
T 1oix_A 187 LTE 189 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=3.3e-34 Score=186.25 Aligned_cols=153 Identities=22% Similarity=0.346 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 89 (170)
+||+++|++|+|||||++++.++.+.. +.|+.+.. ...+. ...+.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887654 35555422 22222 34578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHH-----HhhcCCeEEEEecCCCCChHHHh
Q 030880 90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~ 163 (170)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988876542 3679999999999996542 22222222 22245689999999999999999
Q ss_pred hcCCCC
Q 030880 164 MLHPNT 169 (170)
Q Consensus 164 ~~l~~~ 169 (170)
++|.+.
T Consensus 154 ~~l~~~ 159 (164)
T 1r8s_A 154 DWLSNQ 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998653
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.5e-33 Score=184.29 Aligned_cols=155 Identities=20% Similarity=0.312 Sum_probs=123.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.++|+++|++|+|||||++++.++.+.. +.++.+... ...... ...+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 356899999999999999999999887653 455554332 333334 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHH-----HHHhhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++....|+..+.... ..+.|+++|+||+|+.+... ..+.. ..+...+++++++|+++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999999888876543 26799999999999965432 22222 2233456789999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 158 ~l~~~l~~ 165 (171)
T 1upt_A 158 EAMEWLVE 165 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=8.6e-33 Score=183.13 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=125.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.++|+++|++|+|||||++++.++. ...+.++.+... ..+... ...+.+|||||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888 556666665333 333333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.++. ..++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999988876653 3679999999999996543 3334333322 346789999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 169 ~l~~~l~~ 176 (186)
T 1ksh_A 169 PGIDWLLD 176 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=100.00 E-value=3.9e-33 Score=186.40 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=122.5
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccc---hhhh
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLI---PSYI 79 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~ 79 (170)
.+....+||+++|++|+|||||++++.+.... ................. .+..+.+.+||+||+++|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34556899999999999999999988875332 22222222222222223 2566789999999999987776 8999
Q ss_pred cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------ccccCHHHHHHHHh----hcCC
Q 030880 80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----ELNV 146 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~ 146 (170)
+++|++++|||++++ +++..+..|+..+.... .+.|+++|+||+|+.+ .+.+...++..+++ ..++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999997 77777888888775443 6899999999999764 24455666777887 7788
Q ss_pred eEEEEecCCCCChHHHhhcCCCC
Q 030880 147 MFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.|+++||++ .|++++|+.|++.
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHH
T ss_pred ceEEEEech-hhHHHHHHHHHHH
Confidence 999999999 9999999988764
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.3e-32 Score=181.66 Aligned_cols=158 Identities=23% Similarity=0.346 Sum_probs=124.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
+...++|+++|++|+|||||++++.++.+. .+.++.+.. ...+... .+.+.+||+||++.+...+..+++++|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 356799999999999999999999987543 344555433 2233344 47899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCCh
Q 030880 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI 159 (170)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i 159 (170)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ...++.++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 99999999999999999988875542 3679999999999996543 223333221 233568999999999999
Q ss_pred HHHhhcCCCCC
Q 030880 160 KVCLMLHPNTV 170 (170)
Q Consensus 160 ~~~~~~l~~~i 170 (170)
+++|++|.+.+
T Consensus 166 ~~l~~~l~~~~ 176 (181)
T 1fzq_A 166 QDGMNWVCKNV 176 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-33 Score=183.60 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=121.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++|+++|++|+|||||++++.++.+. .+.++.+... ..+... ...+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988765 4455544322 233333 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. +..++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 267999999999999653 3344444443 2346799999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|++
T Consensus 167 ~l~~~l~~ 174 (187)
T 1zj6_A 167 QGLEWMMS 174 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=199.08 Aligned_cols=162 Identities=31% Similarity=0.496 Sum_probs=137.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998887766666654 333445556677788999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcCC-eEEEEe
Q 030880 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (170)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..+++..++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 7877776654 479999999999996543 4556778888888888 999999
Q ss_pred cCCCCChHHHhhcCCCCC
Q 030880 153 AKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~~i 170 (170)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998754
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=4e-32 Score=194.58 Aligned_cols=159 Identities=30% Similarity=0.484 Sum_probs=139.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..++|+++|.+|+|||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999888777777665 4445566778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEec
Q 030880 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA 153 (170)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 153 (170)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+. +.+..+++..+++..++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 6888887665 48999999999998653 56778899999999997 9999999
Q ss_pred CCCCChHHHhhcCCC
Q 030880 154 KAGFNIKVCLMLHPN 168 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~ 168 (170)
++|.|++++|++|.+
T Consensus 312 ~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIR 326 (332)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999999998764
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=100.00 E-value=2.1e-33 Score=186.00 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=120.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEE---CCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 83 (170)
.+||+++|++|+|||||++++.+. .+...+.++.+.+........ .+..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 444455677666665555433 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---HHHHHHHHhhcCCe----EEEEecCC
Q 030880 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA 155 (170)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 155 (170)
++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+...+. ...+..+++..+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 58999999999887654 579999999999997654432 34456677777876 99999999
Q ss_pred CC-ChHHHhhcCCC
Q 030880 156 GF-NIKVCLMLHPN 168 (170)
Q Consensus 156 ~~-~i~~~~~~l~~ 168 (170)
+. |++++++.|.+
T Consensus 161 ~~~~~~~l~~~i~~ 174 (184)
T 2zej_A 161 ESDALAKLRKTIIN 174 (184)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 96 99999987753
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=2e-33 Score=186.63 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=122.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+.+||+++|++|+|||||++++..+.+.. +.++.+.. ....... ...+.+|||||++++...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 34544422 2233333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++....|+..+.... ..+.|+++|+||+|+.+.. ...+... .+...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999999888876543 3679999999999996542 2222222 223345689999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 173 ~l~~~l~~ 180 (189)
T 2x77_A 173 EGMDWLVE 180 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=6.6e-32 Score=178.34 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=120.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...++|+++|++|+|||||++++.++.+ ..+.++.+... ...... ...+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 34445544332 233333 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999998887654 368999999999999653 23444444432 234589999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 169 ~l~~~l~~ 176 (183)
T 1moz_A 169 EGLDWLID 176 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.7e-33 Score=191.57 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=123.3
Q ss_pred cCCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccee-eeEEEEEEE--------------EECCe
Q 030880 4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR 56 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~ 56 (170)
......+||+++|.+ |+|||||+++|.+ +.+...+.++. +.++....+ ..++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345567999999999 9999999999998 45555555554 223222111 13456
Q ss_pred EEEEEEEe-----------------------CCCcccccccchhhhc---------------------CCcEEEEEEeCC
Q 030880 57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA 92 (170)
Q Consensus 57 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 92 (170)
.+.+.+|| ++|+++|..++..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6677777777777777 799999999999
Q ss_pred Ch--hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 93 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++ ++++.+..|+..+... ...++|+++|+||+|+.+.+.+ +++..++.. .++.++++||++|.|++++|++|++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999998766 3367999999999999655444 577778776 4889999999999999999999865
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.97 E-value=2.3e-31 Score=173.26 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=114.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhhc-
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR- 80 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 80 (170)
+.++|+++|++|+|||||++++.+..+.....++.+.+.....+...+ ..+.+|||||++.+.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 468999999999999999999998766544445444444444444444 5799999999887752 3355554
Q ss_pred -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 81 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
++|++++|+|+++.+. ...|+..+.. .++|+++|+||+|+.....+.. ++..+++..+++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999988643 3446666544 3699999999999865544432 467788888999999999999999
Q ss_pred HHHhhcCCCC
Q 030880 160 KVCLMLHPNT 169 (170)
Q Consensus 160 ~~~~~~l~~~ 169 (170)
+++|++|.+.
T Consensus 153 ~~l~~~l~~~ 162 (165)
T 2wji_A 153 EELKKAISIA 162 (165)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=6.6e-32 Score=182.64 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=113.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-cchhhhcCCc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS 83 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 83 (170)
....+||+++|++|+|||||+++|+++.+...+.++ ..+... ...++. .+.+.+|||||++++.. ++..+++++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 456799999999999999999999998877665433 333333 444433 57899999999999987 7888999999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHHH-HHh--cCCCCeEEEEEeCCCCCCccccC--HHHHHH------------------
Q 030880 84 VAVVVYDVASRQ-SFLNTSKWIDEV-RTE--RGSDVIIVLVGNKTDLVEKRQVS--IEEGEA------------------ 139 (170)
Q Consensus 84 ~~i~v~d~~~~~-s~~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~------------------ 139 (170)
++++|||+++.+ ++.....++..+ ... ...++|+++|+||+|+.+..... .+....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 466655544443 332 23579999999999997543211 011111
Q ss_pred --------------HHh-hc--CCeEEEEecCCC------CChHHHhhcCCCC
Q 030880 140 --------------KSR-EL--NVMFIETSAKAG------FNIKVCLMLHPNT 169 (170)
Q Consensus 140 --------------~~~-~~--~~~~~~~s~~~~------~~i~~~~~~l~~~ 169 (170)
++. .+ ++.|++|||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 11 678999999999 9999999998764
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.97 E-value=2.9e-30 Score=183.17 Aligned_cols=157 Identities=22% Similarity=0.299 Sum_probs=124.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cccchhhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 79 (170)
..+||+++|++|+|||||+++++++... ..+.+|.+.... .....+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987332 133444443333 333333 679999999999988 77888999
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--ccc----cCHHHHHHHHhhcC---CeE
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF 148 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 148 (170)
+++|++++|||++++++++.+..|...+.... .+++|+++++||+|+.+ .+. +..+++.++++.+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755544332 36899999999999976 343 55688889999987 799
Q ss_pred EEEecCCCCChHHHhhcCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~ 168 (170)
+++|+++ .|+.+.|..+.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHH
T ss_pred EEeeecC-ChHHHHHHHHHH
Confidence 9999999 899988877654
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=190.04 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=116.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
..+||+++|.+|+|||||+++|.++.+... .++.+.... .+. ...+.+.+|||||++.+..++..+++++|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998876533 344443332 222 344789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHH
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~ 161 (170)
|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999988887775543 3689999999999996543 223332222 22356899999999999999
Q ss_pred HhhcCCCC
Q 030880 162 CLMLHPNT 169 (170)
Q Consensus 162 ~~~~l~~~ 169 (170)
+|++|.+.
T Consensus 317 l~~~l~~~ 324 (329)
T 3o47_A 317 GLDWLSNQ 324 (329)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=4.6e-30 Score=175.23 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=112.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS 77 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 77 (170)
...++|+++|++|+|||||+++|+++.+.....+..+.+......... ...+.+|||||+... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 467999999999999999999999887643222322223333223223 368999999998321 112234
Q ss_pred hhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH---HHHHHHhhcC--CeEEE
Q 030880 78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE 150 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 150 (170)
++..+|++++|||++++.+++. ...|+..+.... .+.|+++|+||+|+.+...+... .+..++...+ +.+++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788999999999999887642 334555554332 47999999999999876666543 5667777777 89999
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+||++|.|++++|++|++
T Consensus 184 ~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACE 201 (228)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHH
Confidence 999999999999998864
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=4.7e-30 Score=168.68 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=114.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 85 (170)
....++|+++|++|+|||||++++.++.+...+.++.+.+.....+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45678999999999999999999999887766555555455444555555 4678999999999999999999999999
Q ss_pred EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-------C--CeEEEEec
Q 030880 86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------N--VMFIETSA 153 (170)
Q Consensus 86 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~ 153 (170)
++|||++++ ++++.+ ......++|+++|+||+|+.+. ..++........ + +.++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 999999884 333322 2222346899999999999653 223333333322 2 58999999
Q ss_pred CCCCChHHHhhcCCC
Q 030880 154 KAGFNIKVCLMLHPN 168 (170)
Q Consensus 154 ~~~~~i~~~~~~l~~ 168 (170)
++|.|++++|++|++
T Consensus 153 ~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 153 KTKEGLDHLLEMILL 167 (178)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998864
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.97 E-value=9e-31 Score=184.81 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=117.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---cchhhhcCCcE
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~ 84 (170)
||+++|+.|+|||||++++.++..+. ...++.+.+... + +..+++++|||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999888665432 234555544432 2 2347899999999999974 35889999999
Q ss_pred EEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-------cccCHHHHHHHHhh----cCCeEEEE
Q 030880 85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET 151 (170)
Q Consensus 85 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (170)
+|+|||++++ +.......|+..+... .+++|+++++||+|+.++ +++..++++++++. .++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999988 3333444445554443 368999999999999754 35667778888886 68999999
Q ss_pred ecCCCCChHHHhhcCCCCC
Q 030880 152 SAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 152 s~~~~~~i~~~~~~l~~~i 170 (170)
|+++ .+|.+.|..+++.+
T Consensus 155 SAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTS
T ss_pred ccCC-CcHHHHHHHHHHHH
Confidence 9998 59999999887653
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=2.4e-30 Score=194.45 Aligned_cols=156 Identities=23% Similarity=0.370 Sum_probs=124.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
...+||+++|.+++|||||+++|.++.+. .+.++.+..... + ....+.+.+|||||++.+...+..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--E--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--E--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998854 345555544332 2 234578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (170)
+|||++++++++.+..|+..+..... .++|++||+||+|+.+.. ...+..... ...++.++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999999888866443 689999999999996542 223333222 1234579999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 473 ~l~~~l~~~ 481 (497)
T 3lvq_E 473 EGLTWLTSN 481 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998653
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.97 E-value=2.3e-30 Score=172.57 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=108.7
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 72 (170)
..+....++|+++|++|+|||||+++|.++.+.....++.+.+........++ .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 34455679999999999999999999998875444444433333222233333 689999999 66777
Q ss_pred ccchhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--HHHHH-HHhhcCC
Q 030880 73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV 146 (170)
Q Consensus 73 ~~~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~ 146 (170)
..+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+...+.. +++.+ +....++
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 7778888777 9999999999887766532 1122222 4689999999999976654432 33333 3334567
Q ss_pred eEEEEecCCCCChHHHhhcCCC
Q 030880 147 MFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.++++|+++|.|++++|++|.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHH
Confidence 9999999999999999998864
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=4e-30 Score=170.51 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=119.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhh
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY 78 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~ 78 (170)
++++.++|+++|++|+|||||+++|.+........++.+.+.....+...+ ..+.+|||||++.+. .++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 445789999999999999999999998765444445555555555555544 689999999998775 345555
Q ss_pred hc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880 79 IR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 79 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (170)
++ .++++++|+|.++ ++....|+..+.. .+.|+++++||+|+.....+. .++..+++..+++++++|++++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 54 5999999999875 4555667666644 468999999999986554444 4567788888999999999999
Q ss_pred CChHHHhhcCCC
Q 030880 157 FNIKVCLMLHPN 168 (170)
Q Consensus 157 ~~i~~~~~~l~~ 168 (170)
.|++++|++|++
T Consensus 154 ~~v~~l~~~i~~ 165 (188)
T 2wjg_A 154 MGIEELKKAISI 165 (188)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998754
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.96 E-value=4.6e-30 Score=194.30 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=122.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEE--------EECCeEEEEEEEeCCCcccccccch
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM--------YLEDRTVRLQLWDTAGQERFRSLIP 76 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~~~ 76 (170)
.+...+||+++|.+|+|||||++++.++.+...+.++.+.+...... ...+..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 45678999999999999999999999988877777777766654421 1123467899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (170)
.+++++|++++|||+++. +....|+..+.... .+.|+++|+||+|+.+...+..+++..++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998765 55677888887765 47999999999999887888888899999999999999999999
Q ss_pred CChHHHhhcCCC
Q 030880 157 FNIKVCLMLHPN 168 (170)
Q Consensus 157 ~~i~~~~~~l~~ 168 (170)
.|++++|++|.+
T Consensus 193 ~gi~eL~~~l~~ 204 (535)
T 3dpu_A 193 DGVESIAKSLKS 204 (535)
T ss_dssp --CTTHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998754
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=1e-29 Score=166.52 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=111.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 78 (170)
...+|+++|++|+|||||+++|.+.... ....++.+.+.....+..++ ..+.+|||||++++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987542 12233344455555555665 35889999998754221 1235
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.++.. .++...+..++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999988865 45677777766556799999999999853211 12333567999999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|++|.+
T Consensus 153 v~~l~~~l~~ 162 (172)
T 2gj8_A 153 VDVLRNHLKQ 162 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=2.3e-29 Score=162.82 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 81 (170)
.||+++|++|+|||||++++.++... ....+..+.+.........+ ..+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 22233333344444454554 37899999998873 3445667899
Q ss_pred CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChH
Q 030880 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (170)
Q Consensus 82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (170)
+|++++|+|++++.+... .++...... .+.|+++|+||+|+.+.. +++.+++ ..++ .++++|+++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998643322 222222222 368999999999996552 3344445 5677 89999999999999
Q ss_pred HHhhcCCCC
Q 030880 161 VCLMLHPNT 169 (170)
Q Consensus 161 ~~~~~l~~~ 169 (170)
++|++|.+.
T Consensus 151 ~l~~~l~~~ 159 (161)
T 2dyk_A 151 ELLEAIWER 159 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998754
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=7.7e-30 Score=169.26 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=114.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccccchhh
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 78 (170)
+||+++|++|+|||||++++.++.+...+.++.+..... .... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988766655554433322 2222 689999999 56677777778
Q ss_pred hcC-CcEEEEEEeCCChhhHHhH-HHHHHH--------H-HHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880 79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------V-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (170)
Q Consensus 79 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
+++ +++++++|++.+..+++.+ ..|... + ......++|+++|+||+|+.+.. .+++..+++.++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 877 8888888888878888776 556542 2 22223579999999999997654 56678888888864
Q ss_pred -------EEEEecCCCCChHHHhhcCCC
Q 030880 148 -------FIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 148 -------~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++++||++|.|++++|++|.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=1.1e-28 Score=171.07 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=116.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------hhhh-
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------PSYI- 79 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 79 (170)
.+.++|+++|++|+|||||+++|++........+..+.+.....+... ...+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 456899999999999999999999877644444444444444444333 3689999999988776532 4555
Q ss_pred -cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 80 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
.++|++++|+|+++.++.. .|...+.. .++|+++++||+|+.....+. .+...+++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876543 24444433 469999999999987655544 247788888999999999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|++|.+
T Consensus 154 i~el~~~i~~ 163 (258)
T 3a1s_A 154 LEELKEKIVE 163 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=2.7e-28 Score=173.15 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=122.2
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------- 72 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 72 (170)
+++.+.-.|+++|.+|+|||||+|+|++..+... ..+..+........... ....+.+|||||+.++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 4566778999999999999999999999876422 22223223222222222 14689999999986544
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEE
Q 030880 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE 150 (170)
Q Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 150 (170)
.....+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+.+.++ ..+++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4566778899999999999998888887777777665 358999999999997444455677777887775 78999
Q ss_pred EecCCCCChHHHhhcCCC
Q 030880 151 TSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~ 168 (170)
+||++|.|++++|++|.+
T Consensus 161 vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 161 ISALKGANLDELVKTILK 178 (308)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999999998754
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.96 E-value=6.1e-29 Score=172.09 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------cchhhh
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 79 (170)
.+|+++|.+|+|||||+|+|++........++.+.+.....+...+ ..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998865444455555566555565555 3799999999887764 445566
Q ss_pred --cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880 80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (170)
Q Consensus 80 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (170)
+++|++++|+|+++.++...+..++. ..+.|+++|+||+|+.+..... .....+.+.++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998766555444332 2469999999999986554332 22455777889999999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|++|.+
T Consensus 153 gi~el~~~i~~ 163 (256)
T 3iby_A 153 GIPALQQSLLH 163 (256)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 99999998865
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.95 E-value=6.4e-29 Score=173.18 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=113.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhhhc--
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-- 80 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 80 (170)
.++|+++|++|+|||||+++|.+........+..+.+. ....+.. ...+.+|||||+..+. .+...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 57999999999999999999998764333334333332 2333344 5679999999998775 34566665
Q ss_pred CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (170)
++|++++|+|+++.++.. .|...+.. .++|+++++||+|+.....+. .+...+++.++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 699999999998875543 34444443 469999999999986554444 35677888889999999999999999
Q ss_pred HHhhcCCC
Q 030880 161 VCLMLHPN 168 (170)
Q Consensus 161 ~~~~~l~~ 168 (170)
++|++|.+
T Consensus 153 el~~~i~~ 160 (272)
T 3b1v_A 153 QVVKKAAH 160 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2.4e-28 Score=162.59 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=110.8
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 72 (170)
..+....++|+++|++|+|||||+++++++... ...++.+.+.......... .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 445566789999999999999999999988733 2233332222222222222 578999999 56666
Q ss_pred ccchhhhcCC---cEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--ccCHHHHHHHHhhcC
Q 030880 73 SLIPSYIRDS---SVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN 145 (170)
Q Consensus 73 ~~~~~~~~~~---~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~ 145 (170)
..+..+++.+ |++++|+|+++..+ ...+..|+... +.|+++|+||+|+.++. ....+++..++...+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777777766 99999999887633 33333444332 68999999999996543 233455666666644
Q ss_pred -CeEEEEecCCCCChHHHhhcCCC
Q 030880 146 -VMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 146 -~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++++++||++|.|++++|++|.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHH
Confidence 79999999999999999999865
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=9e-29 Score=172.97 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=114.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------chh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS 77 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 77 (170)
+.++|+++|.+|+|||||+|+|++........+..+.+.....+...+ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 568999999999999999999998875444455555555555554444 46889999998876631 223
Q ss_pred hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
++ +++|++++|+|+++.++...+..++.+. ++|+++|+||+|+.+..... .....+++.++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 32 6999999999999876655544444332 59999999999986544332 235667788899999999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
|.|++++|++|.+.
T Consensus 153 g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 153 GRGIEALKLAIDRY 166 (274)
T ss_dssp GHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998664
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4.4e-29 Score=169.17 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=107.8
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhh
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 79 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 79 (170)
.......++|+++|++|+|||||+++|.++.+... +.++.+.+ .....+.+||+||++.+...+..++
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHH
Confidence 34455679999999999999999999998876432 23332211 1445799999999999988888888
Q ss_pred cC----CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCccccC------HHHHHHHHhhc
Q 030880 80 RD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSREL 144 (170)
Q Consensus 80 ~~----~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 144 (170)
+. +|++++|||++ +++++.....|+..+... ...++|+++|+||+|+.+...+. .+++..++...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 87 89999999999 889999988888887664 34689999999999997665443 45567777777
Q ss_pred CCeEEEEecCCCCC
Q 030880 145 NVMFIETSAKAGFN 158 (170)
Q Consensus 145 ~~~~~~~s~~~~~~ 158 (170)
++.++++|+++|.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 78888899888765
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=4.7e-28 Score=164.60 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=105.7
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCc----------cc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ER 70 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~ 70 (170)
.+....++|+++|.+|+|||||+++|+++.. .....+..+.... ..... .....+.+|||||. +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 3445678999999999999999999998863 2122222222222 22222 33467999999994 33
Q ss_pred ccccchhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHhh--
Q 030880 71 FRSLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE-- 143 (170)
Q Consensus 71 ~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-- 143 (170)
+......+++. +|++++|+|++++.+. ....++..+.. .++|+++|+||+|+.+..... .++..+....
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 34455566655 7889999999875332 22334444433 468999999999997544321 1222233322
Q ss_pred -----cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 144 -----LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 144 -----~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.+++++++||++|.|++++|++|.+
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 5679999999999999999998854
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.95 E-value=2.5e-27 Score=165.56 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=115.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhh--
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-- 79 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 79 (170)
+.++|+++|++|+|||||+++|++........++.+.+.........+ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998876444455555565555555555 4599999999887766 455555
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
.++|++++|+|+++.+. ...|...+... ...|+++++||+|+.+....... ...+.+.++++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999987632 22333333332 23899999999998654444332 67788889999999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|+++.+
T Consensus 154 ~~l~~~i~~ 162 (271)
T 3k53_A 154 EELKRMIAL 162 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=2.9e-26 Score=161.99 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=107.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS 77 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 77 (170)
.+..+|+++|.+|+|||||+|+|++..... ...+.++......... .....+.+|||||..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 556789999999999999999999987642 2223222222222222 2346899999999876 3345566
Q ss_pred hhcCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccc-cCHHHHHHHHhhcCCeEEEEecCC
Q 030880 78 YIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
+++.+|++++|+|++++.+.. ..|+ ..+.... .++|+++|+||+|+.+... + .+.+..+ .....++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence 789999999999998774433 3443 3444332 4799999999999865433 1 1222222 1234799999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
|.|++++|++|.+.
T Consensus 157 g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 157 ERQVAELKADLLAL 170 (301)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.94 E-value=1.9e-27 Score=174.30 Aligned_cols=156 Identities=18% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------ch
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP 76 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 76 (170)
+....++|+++|..++|||||+++|++..+. ....+..+.+.........+.. .+.+|||||++.+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4456789999999999999999999987753 2223344445555555555443 7999999999877654 34
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (170)
.+++++|++++|+|++..+. ...|+..+... ++|+++|+||+|+.+.... +...++++.++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 57889999999999843322 34555555543 6999999999999766544 6677788888999999999999
Q ss_pred CChHHHhhcCCCC
Q 030880 157 FNIKVCLMLHPNT 169 (170)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (170)
.|++++|++|.+.
T Consensus 181 ~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 181 KGFDDIGKTISEI 193 (423)
T ss_dssp TSTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988653
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=3e-26 Score=170.41 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=95.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 79 (170)
.++|+++|.+|+|||||+|+|.+... .....+.++.+.....+..++ ..+.+|||||++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 57899999999999999999998753 233345555566556666655 579999999987765433 3467
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
+++|++++|+|++++.+++....+...+... .++|+++|+||+|+.+..... ...+.+....+++++|+++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence 8999999999999988776443333322222 269999999999997654432 23343332378999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|++|.+
T Consensus 386 ~eL~~~i~~ 394 (476)
T 3gee_A 386 DTLKQHMGD 394 (476)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 999998864
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.2e-25 Score=162.56 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=116.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cchh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS 77 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 77 (170)
...++++++|.+|+|||||+++|.+........+..+........... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876432222222223322222222 45799999999754321 1123
Q ss_pred hhcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+...+ +++..++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 345799999999999887 67888888888877653 7999999999999765432 456667777889999999999
Q ss_pred CCChHHHhhcCCC
Q 030880 156 GFNIKVCLMLHPN 168 (170)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (170)
|+|++++|++|.+
T Consensus 320 g~gi~~l~~~i~~ 332 (357)
T 2e87_A 320 GTGIDLVKEEIIK 332 (357)
T ss_dssp TBTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 9999999998864
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2.9e-26 Score=169.68 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI 75 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 75 (170)
...++|+++|.+|+|||||+|++++.... ....+.++.+.....+..++. .+.+|||||+. .|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999987653 233444445555555555553 58999999973 333333
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEE
Q 030880 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI 149 (170)
Q Consensus 76 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (170)
. .+++.+|++++|+|++++.+++.. .|+..+.. .++|+++|+||+|+.+......++..+ +....+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 478899999999999998887665 45555543 469999999999997665543333322 2223367999
Q ss_pred EEecCCCCChHHHhhcCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~ 168 (170)
++||++|.|++++|+.+.+
T Consensus 327 ~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHH
Confidence 9999999999999987653
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=8.9e-26 Score=167.95 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=112.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 75 (170)
...++|+++|.+++|||||++++++... .....++++.+.....+...+. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4568999999999999999999997642 2223344444444444555553 799999999 56665554
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-----CCeEE
Q 030880 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI 149 (170)
Q Consensus 76 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (170)
. .+++.+|++++|+|++++.+. ....|+..+.. .++|+++|+||+|+.+......+++.+.+++. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 468899999999999875332 22334444433 46999999999999877666666666666554 57999
Q ss_pred EEecCCCCChHHHhhcCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~ 168 (170)
++||++|.|++++|+++.+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHH
Confidence 9999999999999998754
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=3.5e-26 Score=164.30 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=96.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 125 (170)
.+.+.+||++|++.++..|..|+++++++|+|||+++ .+++++...|+..+..... .++|++|++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999998 5689999999988876533 6799999999999
Q ss_pred CCCcc---------------ccCHHHHHHHHh-----------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
+.++. .++.+++..++. ..++.+++|||+++.||+++|+++.+
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 85332 356788888886 35678999999999999999998764
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=2.2e-24 Score=158.19 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=115.5
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEE-------EE---------E---ECCeEEEEEEEe
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK-------TM---------Y---LEDRTVRLQLWD 64 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~---~~~~~~~~~i~D 64 (170)
.+..+.++|+++|++++|||||+++|++........... ...... .. . .......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEE
Confidence 345677999999999999999999999754332111000 000000 00 0 011236899999
Q ss_pred CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHh
Q 030880 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR 142 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~ 142 (170)
|||++.|...+..+++.+|++++|+|++++.++.....++..+.... ..|+++++||+|+.+.... ..++..++..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876777777776665543 2589999999999754322 1233344443
Q ss_pred hc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 143 EL---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 143 ~~---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.. +++++++||++|.|+++++++|.+
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence 33 568999999999999999998754
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=6.8e-26 Score=162.25 Aligned_cols=153 Identities=20% Similarity=0.141 Sum_probs=112.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchhhhc---CCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~ 83 (170)
+|+++|.+++|||||+++|.+........+..+.......+..++ ...+.+||+||..+ +..+...+++ +++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 688999999999999999998653211122222222222333333 24799999999543 3334455544 599
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCC
Q 030880 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (170)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 156 (170)
++++|+|+++ +++++....|+.++..+.. .++|+++|+||+|+.... +....+.+.++ .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999999887652 579999999999986432 34566666666 68999999999
Q ss_pred CChHHHhhcCCC
Q 030880 157 FNIKVCLMLHPN 168 (170)
Q Consensus 157 ~~i~~~~~~l~~ 168 (170)
.|++++|++|.+
T Consensus 315 ~gi~eL~~~l~~ 326 (342)
T 1lnz_A 315 EGLRELLFEVAN 326 (342)
T ss_dssp STTHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998754
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=3.5e-25 Score=164.86 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=111.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc-cccc--------cchhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY 78 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 78 (170)
.++|+++|.+|+|||||+|+|.+... .....+.++.+.....+..++ ..+.+|||||.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999998753 233345555566666666655 568999999987 5542 23456
Q ss_pred hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (170)
++++|++++|+|++++.+++... ++..+ .++|+++|+||+|+.+. ...+++..+.. .+++++++|+++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887775532 22222 36899999999999643 34455555432 446899999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++|++|.+
T Consensus 392 i~eL~~~l~~ 401 (482)
T 1xzp_A 392 LEKLEESIYR 401 (482)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 135
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=2.2e-24 Score=158.46 Aligned_cols=160 Identities=21% Similarity=0.187 Sum_probs=103.1
Q ss_pred CcCCCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----eEE
Q 030880 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTV 58 (170)
Q Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 58 (170)
+++....++|+++|+.++|||||+++|.+.. +..+..+ |....+....... + + ...
T Consensus 2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence 3455677999999999999999999998542 2222223 2222222222211 1 1 137
Q ss_pred EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--c
Q 030880 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--V 132 (170)
Q Consensus 59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 132 (170)
.+.+|||||++.|...+...+..+|++++|+|++++ ++.+.+.. +... ...|+++++||+|+.+... .
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTT
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHH
Confidence 899999999999988888888899999999999853 44444332 2222 2257999999999976543 2
Q ss_pred CHHHHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880 133 SIEEGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 133 ~~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
..+++.++++.. +++++++||++|.|+++++++|.+
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 346667776653 579999999999999999998754
No 136
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=1.5e-25 Score=158.95 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=95.4
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
..+++.+||++|++.++..|..|+++++++|+|||++ +.+++.+...|+..+..... .++|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3478999999999999999999999999999999665 66889888888888866543 689999999999
Q ss_pred CCCCcc----------------ccCHHHHHHHH----------hhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 125 DLVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 125 D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
|+.+++ ..+.+++..++ ...++.+++|||+++.||+++|+.+.+
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 986543 46778888884 355678899999999999999988754
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=2.3e-24 Score=160.98 Aligned_cols=155 Identities=20% Similarity=0.179 Sum_probs=108.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 77 (170)
..++.++|+++|..++|||||+++|.+.. ...+..+..+.+.....+..++ ..+.+|||||++.|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34567999999999999999999999866 2222222233333223333333 68999999999999888889
Q ss_pred hhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhc----CCeE
Q 030880 78 YIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSREL----NVMF 148 (170)
Q Consensus 78 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~ 148 (170)
++..+|++++|+|+++ +++.+.+. .+.. .++|.++++||+|+.++.. ...+++..+.... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999987 44443332 2222 3588899999999975322 1234455565555 5789
Q ss_pred EEEecCCCCChHHHhhcCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~ 168 (170)
+++||++|.|+++++++|.+
T Consensus 166 i~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 99999999999999988754
No 138
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=4.7e-25 Score=158.39 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=91.0
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 124 (170)
..+++.+|||+|++.++..|..++++++++|+|||++ +.+++++...|+..+.... ..++|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889999999998887654 2689999999999
Q ss_pred CCCCccc--c-------------------CHHHHHHHHhh----------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880 125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
|+.+++. + +.+++..++.. ..+.+++|||+++.||+++|++++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 24666666432 234568999999999999999876
Q ss_pred C
Q 030880 168 N 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 341 ~ 341 (354)
T 2xtz_A 341 E 341 (354)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=5.3e-24 Score=157.51 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=105.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
....+||+++|.+++|||||+++|++... ..+..+..+.+.....+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-- 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-- 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence 34568999999999999999999965311 011112233333333333
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhh---HHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcc
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 130 (170)
.....+.+|||||+++|...+..+++.+|++++|+|+++... |+...++...+......++| +++++||+|+....
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 334689999999999999999999999999999999987532 22112222222222224566 89999999985321
Q ss_pred ------ccCHHHHHHHHhhcC------CeEEEEecCCCCChHHHhh
Q 030880 131 ------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 131 ------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 164 (170)
....++...+.+..+ ++++++||++|.|++++++
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 112234445555544 4799999999999998654
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.91 E-value=9.4e-25 Score=152.73 Aligned_cols=161 Identities=12% Similarity=0.176 Sum_probs=92.5
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccc----
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---- 71 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---- 71 (170)
++....++|+++|.+|+|||||+|+|++...... + .++.+.+.........+..+.+.+|||||....
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~ 82 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS 82 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT
T ss_pred CcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch
Confidence 3445679999999999999999999887654332 2 344455555555544555679999999997422
Q ss_pred ---cccc-------hhhhc-------------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 72 ---RSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 72 ---~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
..+. ..++. ++|+++++++.+..........++..+.. ++|+++|+||+|+..
T Consensus 83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLT 158 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSC
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCC
Confidence 1111 22222 37889999987653222222334444432 699999999999865
Q ss_pred ccccC--HHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 129 KRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
..+.. ...+.+.....++.++.+|+++++|+++++++|.+
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence 43322 23455566677899999999999999999888754
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=4.9e-24 Score=157.92 Aligned_cols=147 Identities=19% Similarity=0.225 Sum_probs=99.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchhhh
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI 79 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 79 (170)
.+|+++|.+++|||||+|+|+++... ....+..+.+.........+. .+.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987642 223444444555555555553 5889999997642 33456678
Q ss_pred cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH-HHHHhhcCC-eEEEEecCC
Q 030880 80 RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~ 155 (170)
+++|++++|+|++++.+... +..|+.. .++|+++|+||+|+... . ..++ .++. .+++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987644332 3333322 25899999999998532 1 1223 3443 5676 789999999
Q ss_pred CCChHHHhhcCCC
Q 030880 156 GFNIKVCLMLHPN 168 (170)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (170)
|.|++++|+++.+
T Consensus 150 g~gv~~L~~~i~~ 162 (439)
T 1mky_A 150 NINLDTMLETIIK 162 (439)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998753
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.91 E-value=8.8e-24 Score=160.44 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=110.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc---------c----cceeeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT---------Y----QATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---------~----~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 68 (170)
....||+++|+.++|||||+++|+.. ..... . ....+.......+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34579999999999999999999863 11100 0 000111111111111 455689999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--
Q 030880 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-- 146 (170)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 146 (170)
..|...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.. ......++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999989999999999999999999877777666655442 468999999999996543 22334556666666
Q ss_pred -eEEEEecCCCCChHHHhhcCCC
Q 030880 147 -MFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 147 -~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.++.+||++|.|++++|++|.+
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~ 180 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVN 180 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHH
T ss_pred ccEEEEEeecCCCchHHHHHHHH
Confidence 4899999999999999998754
No 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.91 E-value=5.1e-24 Score=161.95 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=106.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC--CCC---------cc--cceeeeEEEE--EEEEE---CCeEEEEEEEeCCCccc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDK--FDN---------TY--QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQER 70 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~--~~~---------~~--~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~~ 70 (170)
..||+++|+.++|||||+++|+... ... .. ....+.+... ..+.+ ++..+.+++|||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999998631 110 00 0011112211 12212 45578999999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---e
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M 147 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 147 (170)
|...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.. ......++...+++ .
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666655442 468999999999996543 22334556666666 4
Q ss_pred EEEEecCCCCChHHHhhcCCC
Q 030880 148 FIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++.+||++|.|++++|++|.+
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~ 178 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVR 178 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHH
T ss_pred EEEeecccCCCchhHHHHHhh
Confidence 899999999999999998754
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=147.38 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=102.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RF 71 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~ 71 (170)
+....++|+++|++|+|||||++++++........+ +.+...........+ ..+.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999877655444 333344444444444 578999999943 33
Q ss_pred cccchhhhcCCcEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC------HHHHHHHHhh
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE 143 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~ 143 (170)
......+++++|++++|+|+++... ...+..+...+... ...|+++|+||+|+.+...+. .+.+..+.+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4444555678899999999875433 22222222222222 236899999999986554333 2457788888
Q ss_pred cCCeEEEEecCCC-----CChHHHhhcCC
Q 030880 144 LNVMFIETSAKAG-----FNIKVCLMLHP 167 (170)
Q Consensus 144 ~~~~~~~~s~~~~-----~~i~~~~~~l~ 167 (170)
.+..++.++...+ .++.++|+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~ 209 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQ 209 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHH
Confidence 8888888877654 68888887653
No 145
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=6.2e-24 Score=150.23 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=107.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccccch
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIP 76 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 76 (170)
.+..+|+++|++|+|||||+|++++..... ...+..+......... .....+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT--EGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE--ETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE--ECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 445689999999999999999999876532 1122222121111122 234579999999987 2344456
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
.+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+........+.+..+.+.++. .++++|+++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 77889999999999876 3233334333222 24699999999999865222233555666666776 799999999
Q ss_pred CCChHHHhhcCCCC
Q 030880 156 GFNIKVCLMLHPNT 169 (170)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (170)
+.|++++++.+.+.
T Consensus 159 g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 159 GLNVDTIAAIVRKH 172 (301)
T ss_dssp TTTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.91 E-value=3e-24 Score=149.09 Aligned_cols=159 Identities=9% Similarity=0.070 Sum_probs=101.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccce-eeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------- 75 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 75 (170)
....++|+++|.+|+|||||++++++... .....+. .+.+.........+ ..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34679999999999999999999998763 3333332 33333333344443 579999999977654322
Q ss_pred ---hhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCccccCH-------HHHHHHHhh
Q 030880 76 ---PSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE 143 (170)
Q Consensus 76 ---~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~ 143 (170)
..+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+.+.. +.. .++..++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 2257899999999999862221 22333333332111 1356666666 99996432 211 234445555
Q ss_pred cCCe---E--EEEecCCCCChHHHhhcCCC
Q 030880 144 LNVM---F--IETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 144 ~~~~---~--~~~s~~~~~~i~~~~~~l~~ 168 (170)
.+.. + +++||+++.|++++|++|.+
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence 5542 2 78999999999999998754
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=9.7e-25 Score=161.81 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=98.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 79 (170)
.++|+++|++|+|||||+|+|++.... ....++++.+.....+..++ ..+.+|||||..++.... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999986432 23334444455444555555 568999999986654332 3357
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
+++|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... ....+. .+.+++++|+++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 89999999999998766544 3444444 237999999999997655433 111111 3568999999999999
Q ss_pred HHHhhcCCC
Q 030880 160 KVCLMLHPN 168 (170)
Q Consensus 160 ~~~~~~l~~ 168 (170)
+++|++|.+
T Consensus 372 ~eL~~~i~~ 380 (462)
T 3geh_A 372 DSLETAILE 380 (462)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=8.5e-24 Score=155.44 Aligned_cols=157 Identities=19% Similarity=0.174 Sum_probs=108.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----eEEEEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ 61 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 61 (170)
....++|+++|+.++|||||+++|++.. ...+..+ +....+....... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4556899999999999999999998542 2222233 2222222222211 1 1 136899
Q ss_pred EEeCCCcccccccchhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHH
Q 030880 62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE 135 (170)
Q Consensus 62 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 135 (170)
+|||||++.|.......+..+|++++|+|+++. ++.+.+.. +... ...|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999888888888899999999999853 44443332 2222 1357899999999976432 2234
Q ss_pred HHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 136 EGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 136 ~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++..+... .+++++++|+++|.|+++++++|.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 196 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED 196 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 55666654 3579999999999999999998754
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=4e-24 Score=154.06 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=87.9
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 125 (170)
.+.+.+||++|++.++..|..++++++++|+|||+++ .+++.+...|+..+.... ..++|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 789999999998887653 36899999999999
Q ss_pred CCCcc----------------ccCHHHHHHHH--------h---hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 126 LVEKR----------------QVSIEEGEAKS--------R---ELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
+.++. ..+.+++..++ . ..++.+++|||+++.||+++|+++.+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 86432 25677887776 1 34678999999999999999998764
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=2e-24 Score=161.59 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=98.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC--CC-----------------------------cccceeeeEEEEEEEEECCe
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DN-----------------------------TYQATIGIDFLSKTMYLEDR 56 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 56 (170)
..+||+++|.+++|||||+++|++... .. +..+..+.+. ........
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFSTH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEecC
Confidence 468999999999999999999986511 00 0011111121 22223344
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHh-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
...+.+|||||+++|...+..+++.+|++++|+|++++.+... ...+...+.... ...|+++++||+|+.+..+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence 5689999999999999999999999999999999998754322 111112222222 2356999999999976433
Q ss_pred cCHHHH----HHHHhhc-----CCeEEEEecCCCCChHHH
Q 030880 132 VSIEEG----EAKSREL-----NVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 132 ~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~i~~~ 162 (170)
...++. ..+.... +++++++||++|.|++++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 333333 3333333 468999999999999864
No 151
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.4e-24 Score=141.50 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=90.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC--
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-- 81 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 81 (170)
...++|+++|++|+|||||++++.+..+... ..++.+ .......+.+||+||++.+...+..++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4678999999999999999999998875431 112211 11134578999999999998888888776
Q ss_pred --CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCccc
Q 030880 82 --SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 82 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~ 131 (170)
+|++++|||++ +++++.....|+..+... ...+.|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999998888887654 235799999999999976543
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=2.7e-23 Score=150.08 Aligned_cols=157 Identities=18% Similarity=0.096 Sum_probs=104.6
Q ss_pred cee-EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccccchhh
Q 030880 9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY 78 (170)
Q Consensus 9 ~~~-i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 78 (170)
.++ |+++|++|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|.-. +... ...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence 355 99999999999999999998775433334444455555666666 4689999999622 2222 234
Q ss_pred hcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhc---CCeEEEEe
Q 030880 79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS 152 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s 152 (170)
+..+|.+++|+|++++. ..+....|...+......+.|+++|+||+|+.+.... ....+..++..+ +..++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78999999999999876 5555555655555544467899999999998654310 012233344444 34789999
Q ss_pred cCCCCChHHHhhcCCC
Q 030880 153 AKAGFNIKVCLMLHPN 168 (170)
Q Consensus 153 ~~~~~~i~~~~~~l~~ 168 (170)
++++.|+++++++|.+
T Consensus 335 A~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999999999998754
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=2.9e-23 Score=153.52 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=104.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcc----------ccee-------------------eeEEEEEEEEECC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTY----------QATI-------------------GIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~----------~~~~-------------------~~~~~~~~~~~~~ 55 (170)
...+||+++|..++|||||+++|++... .... ..+. +.+..........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4458999999999999999999986531 1000 0110 0111111112233
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc----
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---- 131 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---- 131 (170)
....+.+|||||+++|...+..+++.+|++++|+|++++... ....++..+... ...|+++++||+|+.+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 446899999999999988888899999999999999876422 233344333322 1236899999999975321
Q ss_pred cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHhhc
Q 030880 132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~~ 165 (170)
...++...+++..+ ++++++||++|.|++++|+.
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 12355667777777 68999999999999986554
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=1.4e-23 Score=144.60 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=101.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccce--eeeEEEEEEEEECCeEEEEEEEeCCCc--------ccccccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLI 75 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 75 (170)
....+||+++|.+|+|||||+|++++........++ .+........... +..+.+|||||. +++....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356799999999999999999999988765433322 2222223333333 357999999996 3333333
Q ss_pred hhhh----cCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc------CHHHHHHHHhhc
Q 030880 76 PSYI----RDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------SIEEGEAKSREL 144 (170)
Q Consensus 76 ~~~~----~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~ 144 (170)
..++ +++|++++|+|+++.... ..+..++..+......+.|+++++||+|+.+.... .....+.+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 3333 899999999999853211 11223333332222236899999999999653211 114467777888
Q ss_pred CCeEEEEecCC-----CCChHHHhhcCC
Q 030880 145 NVMFIETSAKA-----GFNIKVCLMLHP 167 (170)
Q Consensus 145 ~~~~~~~s~~~-----~~~i~~~~~~l~ 167 (170)
+..++..+... +.|++++++.|.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~ 203 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVE 203 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHH
Confidence 88777777655 579999988764
No 155
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1e-24 Score=161.48 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=95.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchhhh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 79 (170)
..+|+++|.+|+|||||+|+|.+..... ...+..+.+.... .....+..+.+|||||++ ++...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~--~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEE--ECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEE--EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 3689999999999999999999876532 1122222233222 233334579999999985 4556677788
Q ss_pred cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (170)
Q Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (170)
+++|++++|+|+.++.+... .++..+.. ..++|+++|+||+|+.+... ++.++. .++. .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999988765443 23333322 25789999999999864321 111222 3455 789999999999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++++++.+
T Consensus 152 v~~L~~~i~~ 161 (436)
T 2hjg_A 152 LGDLLDAVAE 161 (436)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999998754
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=1.1e-25 Score=168.83 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=109.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 87 (170)
++.+|+++|++++|||||+++|.+..+.....++.+.+.....+..+ ....+.+|||||++.|..++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999999765544444444434333333222 22378999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHH---Hhhc--CCeEEEEecCCCCChHH
Q 030880 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAK---SREL--NVMFIETSAKAGFNIKV 161 (170)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~i~~ 161 (170)
|+|+++....+.. ..+......++|+++++||+|+.+.... ...+.... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986444332 2223333357899999999998643221 11222221 1122 35899999999999999
Q ss_pred HhhcCC
Q 030880 162 CLMLHP 167 (170)
Q Consensus 162 ~~~~l~ 167 (170)
+|++|.
T Consensus 158 Lle~I~ 163 (537)
T 3izy_P 158 LAEATI 163 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.90 E-value=7.8e-25 Score=158.25 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=86.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--------ceeeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 71 (170)
..++|+++|++|+|||||+++|++..... .+. ++.+...........+....+++|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987653322 211 23333333333334555678999999998 666
Q ss_pred cccch-------hhhcCCcEE-----------EEEEeCCC-hhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 72 RSLIP-------SYIRDSSVA-----------VVVYDVAS-RQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 72 ~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
..++. .++++++++ +++|++++ ..++..+. .++..+ ..++|+|+|+||+|+....+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHH
Confidence 66665 555544332 35555554 44554444 333332 36799999999999976655
Q ss_pred cCH--HHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 132 VSI--EEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
+.. .++..++...+++++++|++++.| ++.|.++.
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~ 228 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQT 228 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHH
Confidence 543 577788888899999999999998 76665543
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=2.4e-24 Score=153.33 Aligned_cols=113 Identities=23% Similarity=0.283 Sum_probs=92.9
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 124 (170)
..+++.+||++|++.++..|..|+++++++|+|||++ +.+++.+...|+..+..... .++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 77899999999888876543 689999999999
Q ss_pred CCCCcc---------------ccCHHHHHHHHhh---------------------------cCCeEEEEecCCCCChHHH
Q 030880 125 DLVEKR---------------QVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 125 D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~i~~~ 162 (170)
|+..++ ..+.+++..++.. .++.++++||+++.+|+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 985321 1245666555432 2367899999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|+.+..
T Consensus 319 F~~v~~ 324 (340)
T 4fid_A 319 FMLAVD 324 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=3.9e-24 Score=158.18 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=105.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCcc-----------------------------cceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-----------------------------QATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 54 (170)
....+||+++|+.++|||||+++|++. .+.... .+..+.+... ....
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~ 80 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFE 80 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEE
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEe
Confidence 346789999999999999999999864 221110 1112222222 2233
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh----cCCCC-eEEEEEeCCCCCCc
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE----RGSDV-IIVLVGNKTDLVEK 129 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~-p~ivv~nK~D~~~~ 129 (170)
.....+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|..+...+ ...++ |+++++||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 345689999999999999999999999999999999998 6776544332222211 11234 58899999999752
Q ss_pred c------ccCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHhh
Q 030880 130 R------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 130 ~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 164 (170)
. ....+++..++...+ ++++++|+++|.|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 122455667776665 6899999999999986654
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=9e-23 Score=151.17 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=102.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 75 (170)
..++++++|++|+|||||++++++.... ....+..+.+.....+...+. .+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987542 222334444444455555664 67899999975432211
Q ss_pred -hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH-----HHHhhcCCeEE
Q 030880 76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFI 149 (170)
Q Consensus 76 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~ 149 (170)
..+++.+|++++++|++++.+.+.. ++...... .++|+++++||+|+.+......++.. .+....+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2457789999999999877655442 22222222 46999999999999765544433332 22223357899
Q ss_pred EEecCCCCChHHHhhcCCC
Q 030880 150 ETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~ 168 (170)
++||++|.|++++|+.+.+
T Consensus 333 ~~SA~~g~gv~~l~~~i~~ 351 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNL 351 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999988753
No 161
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.89 E-value=4.3e-24 Score=159.09 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEECC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (170)
...++|+++|+.++|||||+++|++. .+... .....+.+.....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 44689999999999999999999752 11100 0011111111112222
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcc-
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR- 130 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 130 (170)
....+.+|||||+++|...+..+++.+|++|+|+|+++. .+|+...++...+......++| +++++||+|+.+..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 246899999999999999999999999999999999986 3444333333333332234677 99999999995321
Q ss_pred -----ccCHHHHHHHHhhc-------CCeEEEEecCCCCChHHHhh
Q 030880 131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKVCLM 164 (170)
Q Consensus 131 -----~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~ 164 (170)
.....+...+++.. +++++++|+++|.|++++|+
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 11233566666655 46799999999999988763
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=8.7e-25 Score=162.84 Aligned_cols=153 Identities=22% Similarity=0.200 Sum_probs=105.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 86 (170)
.+..+|+++|+.++|||||+++|....+.....+..+.+.....+..+ +..+++|||||++.|..++...++.+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 356799999999999999999998765443322222222222222222 347899999999999999999999999999
Q ss_pred EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--ccCHH--HHHHHHhhcC--CeEEEEecCCCC
Q 030880 87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIE--EGEAKSRELN--VMFIETSAKAGF 157 (170)
Q Consensus 87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~ 157 (170)
+|+|+++. ++.+.+ ..+. ..++|+++++||+|+.+.. .+..+ +...++..++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999874 333322 2222 2468999999999996431 11100 0001112233 689999999999
Q ss_pred ChHHHhhcCCC
Q 030880 158 NIKVCLMLHPN 168 (170)
Q Consensus 158 ~i~~~~~~l~~ 168 (170)
|++++|++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999999864
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.4e-23 Score=157.65 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=101.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-------------------------------cceeeeEEEEEEEEECC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED 55 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (170)
...+||+++|.+++|||||+++|++....-.. .+..+.+.....+ ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence 45689999999999999999999875321110 0112222222222 23
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCC-CeEEEEEeCCCCCCccc
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~ 131 (170)
....+.||||||+++|...+..+++.+|++|+|+|++++. ++....++...+......+ .|+++|+||+|+.+...
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 4468999999999999999999999999999999998742 1111122222222222233 45999999999976332
Q ss_pred cC----HHHHHHHHhhc-----CCeEEEEecCCCCChHHH
Q 030880 132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 132 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~~ 162 (170)
.. ..+...+.... +++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22 23334444444 358999999999999876
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=1.9e-22 Score=153.42 Aligned_cols=154 Identities=22% Similarity=0.213 Sum_probs=103.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----cceeeeEEEEEEE------------EECCeEEEEEEEeCCCccc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~ 70 (170)
.+..+|+++|++++|||||+++|++....... .++.+........ ........+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35679999999999999999999875443211 1121211111100 0001112599999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-------------H
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------I 134 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~ 134 (170)
|..++..+++.+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+.+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 666654432 221 468999999999986432110 0
Q ss_pred ----------HHHHHHHhhc---------------CCeEEEEecCCCCChHHHhhcCC
Q 030880 135 ----------EEGEAKSREL---------------NVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 135 ----------~~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.+......+. .++++.+||++|.|+++++++|.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 0111111111 23899999999999999998875
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=8.7e-23 Score=147.84 Aligned_cols=142 Identities=10% Similarity=0.028 Sum_probs=102.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 90 (170)
+|+++|.+++|||||+++|+ . ...+.+..... .......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------K--KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------E--EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------h--CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 1 11111222222 23334579999999999998888888999999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCccccC--HHHHHHHHhhcC---CeEEE--EecCC---CCC
Q 030880 91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN 158 (170)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~ 158 (170)
+ ...+.....++..+.. .++|. ++++| |+|+ ++.... .+++.++....+ +++++ +||++ +.|
T Consensus 93 -~-~g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -C-CCCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 4 3334445555555443 24676 88888 9999 543322 255666666553 68999 99999 999
Q ss_pred hHHHhhcCCC
Q 030880 159 IKVCLMLHPN 168 (170)
Q Consensus 159 i~~~~~~l~~ 168 (170)
++++++.|.+
T Consensus 167 i~~L~~~l~~ 176 (370)
T 2elf_A 167 VDELKARINE 176 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.2e-23 Score=156.45 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC--------cccccccch
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIP 76 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~ 76 (170)
..+...+|+++|.+|+|||||+|+|.+...... ..+.+.+...........+..+.+||||| ++++.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 345667999999999999999999998765311 22222333333333444456899999999 666777788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (170)
.+++++|++++|+|..+.-+ ....++..+... .++|+++|+||+|+.+.. ....++. .++. .++.+||++
T Consensus 98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence 88999999999999876432 233343333322 579999999999985332 1111111 2333 567999999
Q ss_pred CCChHHHhhcCCC
Q 030880 156 GFNIKVCLMLHPN 168 (170)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (170)
|.|++++++.+.+
T Consensus 169 g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 169 GLGLGDLLDAVAE 181 (456)
T ss_dssp CTTHHHHHHHHHT
T ss_pred ccchHHHHHHHHh
Confidence 9999999998754
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=2.4e-23 Score=152.87 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=102.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc-------ccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
....++|+++|++++|||||+++|++. .+... .....+.+..............+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 446689999999999999999999873 11110 000111222222233334456899999999999
Q ss_pred ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC-
Q 030880 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN- 145 (170)
Q Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~- 145 (170)
|...+..+++.+|++++|+|+++.... ....++..+.. .++| +++++||+|+.+... ...+++..+++..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 988888999999999999999876432 33445544443 3578 889999999964221 11235666666665
Q ss_pred ----CeEEEEecCCCCC
Q 030880 146 ----VMFIETSAKAGFN 158 (170)
Q Consensus 146 ----~~~~~~s~~~~~~ 158 (170)
++++++||++|.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6899999999987
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=4.7e-23 Score=150.87 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=106.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC-------CCCc-------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
+.+||+++|+.++|||||+++|++.. +... .....+.+..............+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 1100 000111222222233334456899999999999988
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC----
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN---- 145 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 145 (170)
.+..+++.+|++++|+|+++....+. ..++..+.. .++| +++++||+|+.+... ...+++.++++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888999999999999998543222 233333322 3578 689999999864221 12345666776665
Q ss_pred -CeEEEEecCCCCC----------hHHHhhcCCC
Q 030880 146 -VMFIETSAKAGFN----------IKVCLMLHPN 168 (170)
Q Consensus 146 -~~~~~~s~~~~~~----------i~~~~~~l~~ 168 (170)
++++++||++|.| +.++++.|.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 5899999999764 8888887643
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.88 E-value=6.1e-24 Score=157.92 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=102.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (170)
....++|+++|.+++|||||+++|++. .+... ..+..+.+..... ..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FE 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Ee
Confidence 345699999999999999999999864 11110 0011122221122 23
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 127 (170)
.....+.+|||||+++|...+..+++.+|++++|+|+++.. +|+ ....++..+.. .++| +++++||+|+.
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 34468999999999999998999999999999999998752 332 22222222222 3465 89999999996
Q ss_pred Cccc----cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880 128 EKRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL 163 (170)
Q Consensus 128 ~~~~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 163 (170)
+... ...+++..+++..+ ++++++||++|.|+.++.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 3211 12344556666555 689999999999998654
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=1.2e-22 Score=152.85 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=81.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC------------------CCCc----ccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK------------------FDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (170)
...+|+++|.+++|||||+++|+... ..+. ..+..+.......+.. ..+.+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence 45799999999999999999997211 0000 0011111222222222 3478999999
Q ss_pred CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
||+..|...+..+++.+|++|+|+|+++..+......| ..+. ..++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999987665555444 2222 24689999999999854
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=1.1e-22 Score=143.75 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=100.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccee----------------------eeEE-----------
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATI----------------------GIDF----------- 46 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~----------------------~~~~----------- 46 (170)
.....+|+++|.+|+|||||+|+|++..+.+.. .|+. +.+.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345679999999999999999999988763221 1220 0000
Q ss_pred ----------EEEEEEE-CCeEEEEEEEeCCCcc-------------cccccchhhhcCCcEEE-EEEeCCChhhHHhHH
Q 030880 47 ----------LSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNTS 101 (170)
Q Consensus 47 ----------~~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 101 (170)
....+.+ ......+.+|||||.. .+......++++++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 0012579999999964 23446667888888777 699998764433333
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh--cC-CeEEEEecCCCCChHHHhhcCC
Q 030880 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.++..+ ...+.|+++|+||+|+.+......+.+...... .+ .+++++||++|.|++++|++|.
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence 344333 235689999999999976544333322211111 13 3688999999999999998764
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=4.1e-22 Score=158.69 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=108.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CC-----C--cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------FD-----N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 71 (170)
....++|+++|++++|||||+++|++.. +. + ......+.+..............+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456899999999999999999998631 00 0 00111222222222233444568999999999999
Q ss_pred cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC--
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-- 145 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 145 (170)
...+..+++.+|++|+|+|+++... .....++..+... ++| +++++||+|+.+... ...+++..+.+..+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888889999999999999987632 2334444444332 578 789999999975221 12345666776665
Q ss_pred ---CeEEEEecCCC--------CChHHHhhcCCC
Q 030880 146 ---VMFIETSAKAG--------FNIKVCLMLHPN 168 (170)
Q Consensus 146 ---~~~~~~s~~~~--------~~i~~~~~~l~~ 168 (170)
++++++|+++| .|++++++.|.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 58999999999 578899887654
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.7e-23 Score=158.43 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=83.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEEC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE 54 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
....++|+++|.+++|||||+++|++... ..+..+..+.+.... .+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEE
Confidence 34568999999999999999999974210 000011222222222 222
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hH--H-hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--L-NTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 127 (170)
.....+.||||||+++|...+..+++.+|++|+|+|++++. ++ . .....+..+.. .++| +|+|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 34468999999999999999999999999999999998642 22 1 12222222222 3465 89999999986
Q ss_pred Ccccc----CHHHHHHHH-hhcCC-----eEEEEecCCCCChH
Q 030880 128 EKRQV----SIEEGEAKS-RELNV-----MFIETSAKAGFNIK 160 (170)
Q Consensus 128 ~~~~~----~~~~~~~~~-~~~~~-----~~~~~s~~~~~~i~ 160 (170)
+.... ...+...+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 52211 123444454 44454 79999999999998
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=9.6e-21 Score=131.59 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc-----
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR----- 80 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 80 (170)
.+.++|+++|.+|+|||||++++++..... ...+..+...........+ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 467999999999999999999999876522 1122222233333333444 58999999999888766655554
Q ss_pred ----CCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCccc
Q 030880 81 ----DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 81 ----~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~ 131 (170)
++|++++|++++... +.. ...|+..+......+ .|+++|+||+|+.+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence 789999999987655 333 346777776655433 48999999999864433
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=3.3e-21 Score=129.60 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI 75 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 75 (170)
.....+|+++|++|+|||||++++.+..+.....++.+...........+ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44568999999999999999999998764333333333232222222222 578999999742 12222
Q ss_pred hhhh---cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcC--C
Q 030880 76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V 146 (170)
Q Consensus 76 ~~~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 146 (170)
..++ ..++++++++|++++.+... +..|+. . .+.|+++++||+|+.+..+ .....+..++.+.+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2333 47899999999988655432 222321 1 4688999999999865422 22355666666654 5
Q ss_pred eEEEEecCCCCChHHHhhcCCC
Q 030880 147 MFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.++++|++++.|+++++++|.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHH
Confidence 7899999999999999988753
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.85 E-value=5e-21 Score=147.85 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=81.2
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-------------ccc---eeeeEEEEEEEEECCeEEEEEEEe
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA---TIGIDFLSKTMYLEDRTVRLQLWD 64 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D 64 (170)
|.........+|+++|+.|+|||||+++|++...... ..+ ..+.+............+.+++||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 4445556678999999999999999999984322100 000 001111122222223357899999
Q ss_pred CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
|||+..+...+..+++.+|++++|+|+++.-... ...++..+.. .++|+++++||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 9999999988999999999999999987653322 2234444433 368999999999986
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.85 E-value=6.3e-22 Score=139.97 Aligned_cols=135 Identities=18% Similarity=0.149 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh-hHHhHH
Q 030880 24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS 101 (170)
Q Consensus 24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 101 (170)
+|+.++..+.+. ..+.|+.+ +........++ ++.+||+ ++++..++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888887 77788888 44343332222 7899999 8999999999999999999999999997 788899
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.|+..+.. .++|+++|+||+|+.+...+ +++.++++.++ +.++++||++|.|++++|..+...
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 99987754 46999999999999755433 45677777777 899999999999999999987654
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.84 E-value=3.1e-21 Score=139.70 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeE---EE-----------E---------------------------
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---FL-----------S--------------------------- 48 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~-----------~--------------------------- 48 (170)
.+|+++|++|+|||||++++.+..+.+......+.. .. .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999976633322111100 00 0
Q ss_pred -----------EEEE-ECCeEEEEEEEeCCCcccc-------------cccchhhhcCCcEEEEEEeCCChhhHHhHHHH
Q 030880 49 -----------KTMY-LEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW 103 (170)
Q Consensus 49 -----------~~~~-~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 103 (170)
.... .......+.+|||||...+ ......+++++|++++++|.++..... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 0000 0111236899999998765 456678899999999999876543221 334
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880 104 IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML 165 (170)
Q Consensus 104 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (170)
+..+......+.|+++|+||+|+.+......+.+..+...++..|+.++++++.++++.+..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 44444444467899999999999876655555566666677889999999999988876543
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=3.9e-20 Score=129.07 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=82.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh-------h
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-------Y 78 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~ 78 (170)
...++|+++|.+|+|||||+|+|++...... ..+..+........ ...+..+.+|||||+..+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR--SRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE--EETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE--eeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 3579999999999999999999998765321 11222222222222 233468999999998776543322 1
Q ss_pred --hcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCccc
Q 030880 79 --IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 79 --~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~ 131 (170)
.+.+|++++|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.++..
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 2479999999998754 3333 346677776654433 69999999999976543
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.83 E-value=4.9e-22 Score=140.44 Aligned_cols=156 Identities=15% Similarity=0.215 Sum_probs=82.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC-CCCCccc--------ceeeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 71 (170)
..++|+++|++|+|||||+++|.+. .++..+. ++.............+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999998875 4333221 11111111122222344568999999997 444
Q ss_pred cccch-------hhhcC-------------CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 72 RSLIP-------SYIRD-------------SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 72 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
..... .++++ +++++++.+++. .+++.... ..+... ...+|+++|+||.|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHHH
Confidence 44443 34332 334455544432 23333321 222222 24689999999999975543
Q ss_pred c--CHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
+ ..+++.++++..++.++++|++++ |++++|.++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHH
Confidence 3 346788889999999999999999 99999987654
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.83 E-value=1.8e-20 Score=137.07 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=104.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchh---hhcCCc
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDSS 83 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~~ 83 (170)
.|.++|++|+|||||++.+.+....-...+..+.......+...+ ...+.+||+||..+ +..+... .++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 588999999999999999987643111111111122122222232 24689999999643 2222222 245799
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
.++.++|++ ..++..+..+..++..+.. ...|.++++||+|+... ....+.....+..+..++.+||++++|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 6667777777766655431 35888999999998654 233445555666788999999999999999
Q ss_pred HhhcCCC
Q 030880 162 CLMLHPN 168 (170)
Q Consensus 162 ~~~~l~~ 168 (170)
++++|.+
T Consensus 315 L~~~i~~ 321 (416)
T 1udx_A 315 LKEALHA 321 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.83 E-value=2e-20 Score=136.51 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=47.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT--M-------------------YLED-RTVRLQLWDTAG 67 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g 67 (170)
++|+++|.+++|||||+|+|++........|.++.+..... . ...+ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632222222222211111 1 1122 246899999999
Q ss_pred ccc----ccccc---hhhhcCCcEEEEEEeCCCh
Q 030880 68 QER----FRSLI---PSYIRDSSVAVVVYDVASR 94 (170)
Q Consensus 68 ~~~----~~~~~---~~~~~~~~~~i~v~d~~~~ 94 (170)
... ...+. ..+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 22222 2457899999999999875
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=137.02 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=83.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcc--------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------ 73 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------ 73 (170)
..++|+++|++|+|||||++.|.+....... .++.............+....+++||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3578999999999999999999987653211 11111111111112223345799999999765311
Q ss_pred -------------------cchhhhcCCcEEEEEEeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880 74 -------------------LIPSYIRDSSVAVVVYDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (170)
Q Consensus 74 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (170)
....++.++++.+++|+.... .+++... .|+..+. .++|+|+|+||+|+....++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 123344556655555555432 3444443 4555553 36999999999999766555
Q ss_pred CH--HHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 133 SI--EEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
.. .++..++...++.++++|++++.++.++|..+.+.
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 44 67788888889999999999999999988877654
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.82 E-value=1.1e-19 Score=140.88 Aligned_cols=158 Identities=11% Similarity=0.164 Sum_probs=102.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeee-EEE--------EE----------------------------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGI-DFL--------SK---------------------------- 49 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~-~~~--------~~---------------------------- 49 (170)
..++|+++|.+|+|||||+|+|++....+. ..|++.. ... ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998765332 2222210 000 00
Q ss_pred ----------------EEEECCeE--EEEEEEeCCCccc---ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 030880 50 ----------------TMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR 108 (170)
Q Consensus 50 ----------------~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (170)
.+..+... ..+.+|||||... .......+++++|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00011100 2589999999654 33456678899999999999998877766655544432
Q ss_pred HhcCCCCeEEEEEeCCCCCCccccCHH----------HHH-----HHHhh--------cCCeEEEEecC-----------
Q 030880 109 TERGSDVIIVLVGNKTDLVEKRQVSIE----------EGE-----AKSRE--------LNVMFIETSAK----------- 154 (170)
Q Consensus 109 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~s~~----------- 154 (170)
. .+.|+++|+||+|+.....++.+ ... .+... .+..++.+|++
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 35789999999998654311111 111 11111 12478999999
Q ss_pred ---CCCChHHHhhcCCC
Q 030880 155 ---AGFNIKVCLMLHPN 168 (170)
Q Consensus 155 ---~~~~i~~~~~~l~~ 168 (170)
++.|++++++.|.+
T Consensus 305 ~~~~~~Gi~~L~~~L~~ 321 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNT 321 (695)
T ss_dssp CCCTTSSHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHH
Confidence 99999999987643
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=8.2e-20 Score=137.63 Aligned_cols=154 Identities=19% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-c-----------c--------cceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-T-----------Y--------QATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (170)
....+|+++|++|+|||||+++|+.....- . . .+..+.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 356899999999999999999998632100 0 0 0011111111112222334789999999
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (170)
|+..|......+++.+|++|+|+|+++..... ...++..+ ...++|+++++||+|+..... .+...++...++.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~~~~--~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDIRDP--MELLDEVENELKI 164 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCCSCH--HHHHHHHHHHHCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCccccH--HHHHHHHHHHhCC
Confidence 99999988889999999999999998763221 12222222 235799999999999965432 2334455555554
Q ss_pred e-----EEEEecCCCCChHHHhhcC
Q 030880 147 M-----FIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 147 ~-----~~~~s~~~~~~i~~~~~~l 166 (170)
. +...|++++.|+.++++..
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTE
T ss_pred CccceecceecccCcceeeehhhhh
Confidence 3 4457899999998887643
No 186
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=4.7e-20 Score=134.01 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=92.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 125 (170)
.+.+.+|||+|++.++..|..|+++++++|+|||+++ .++|++...|+..+.... ..++|++|++||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3789999999999999999999999999999999999 899999999999987754 36899999999999
Q ss_pred CCCccc---c---------------------------CHHHHHHHH-----hh--------cCCeEEEEecCCCCChHHH
Q 030880 126 LVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 126 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~i~~~ 162 (170)
+..++. + ..+++..++ .. .++.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854321 1 135566653 21 2467889999999999999
Q ss_pred hhcCCC
Q 030880 163 LMLHPN 168 (170)
Q Consensus 163 ~~~l~~ 168 (170)
|+++.+
T Consensus 376 F~~v~~ 381 (402)
T 1azs_C 376 FNDCRD 381 (402)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 187
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=1e-19 Score=141.06 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=81.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCC------Cc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD------NT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 68 (170)
....+|+++|++|+|||||+++|+.. ... .. .....+.......+.. ..+.+.+|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECcCc
Confidence 45689999999999999999999842 110 00 0011111111122222 2478999999999
Q ss_pred ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
..|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999998877666555543 322 3699999999999864
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=1.5e-19 Score=128.59 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=64.7
Q ss_pred EEEEEEeCCCccc-------------ccccchhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880 58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK 123 (170)
Q Consensus 58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (170)
..+.+|||||... +......+++++|++++|+|.++.... .....++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999753 344566778999999999997433211 1111222222 2357899999999
Q ss_pred CCCCCccccCHHHHHHHHhhcCCeEEEEecCC------CCChHHHhhcC
Q 030880 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKA------GFNIKVCLMLH 166 (170)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~i~~~~~~l 166 (170)
+|+.+......+.+.......+..++.+++.+ +.|+.++++.+
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 99976544222323211112235666666554 67788777664
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.80 E-value=3.5e-18 Score=132.73 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=82.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC--CCCc-----------c-----cceeeeEEEEEEEEE-----CCeEEEEEE
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----------Y-----QATIGIDFLSKTMYL-----EDRTVRLQL 62 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~-----~~~~~~~~i 62 (170)
.....+|+++|..++|||||+++|+... .... + ....+.......+.. .+..+.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3556899999999999999999997531 1100 0 011111111112222 223478999
Q ss_pred EeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 63 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
|||||+..|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence 99999999998999999999999999999987554444333 2222 24689999999999854
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=7.7e-18 Score=130.67 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=97.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc--CCCCCc-----------c-----cceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNT-----------Y-----QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 67 (170)
.....+|+++|.+|+|||||+++|+. +..... + .+..+.......+... ...+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 45568999999999999999999985 221100 0 0111111111122222 46899999999
Q ss_pred cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV- 146 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 146 (170)
+..+...+..+++.+|++++|+|+++..+......|. .+.. .++|+++++||+|+.... .......+...++.
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~~~--~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLGAN--FEYSVSTLHDRLQAN 158 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTTCC--HHHHHHHHHHHHCCC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccccc--hHHHHHHHHHHhCCC
Confidence 9999988999999999999999999876666555543 3333 368999999999986542 11222333333332
Q ss_pred ---eEEEEecCCCCChHHHhhcC
Q 030880 147 ---MFIETSAKAGFNIKVCLMLH 166 (170)
Q Consensus 147 ---~~~~~s~~~~~~i~~~~~~l 166 (170)
..+.+|+ +.|++.+++++
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l 179 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLV 179 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETT
T ss_pred ceeEEeeccc--CCCcceeeeee
Confidence 3566666 55665555554
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.74 E-value=4.5e-19 Score=128.03 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=92.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------cceee----------------------eE-------------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIG----------------------ID------------- 45 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~----------------------~~------------- 45 (170)
....+|+++|.+++|||||+|+|++..+.+.. .|+.. .+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999988763221 12200 00
Q ss_pred --------EEEEEEEE-CCeEEEEEEEeCCCccc-------------ccccchhhhcCCcEEEE-EEeCCChhhHHhHHH
Q 030880 46 --------FLSKTMYL-EDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVV-VYDVASRQSFLNTSK 102 (170)
Q Consensus 46 --------~~~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 102 (170)
.....+.+ ......+.+|||||... +..+...|+++++.+++ +.+++.. +... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence 00000000 01135799999999532 33456667766665555 5555432 2211 1
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH--HhhcC-CeEEEEecCCCCChHHHhhcCC
Q 030880 103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK--SRELN-VMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 103 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
++..+......+.|+++|+||+|+.+............ ....+ ..++.+|++++.|++++++.+.
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence 22223333345789999999999975543222221111 11123 2678899999999999988764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=3.1e-18 Score=115.98 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=92.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEE--------------EEEEEEE----------------CCeE
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDF--------------LSKTMYL----------------EDRT 57 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 57 (170)
...+++++|.+|+|||||+++|...............+. ....... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 346899999999999999999987532111111110000 0000100 1123
Q ss_pred EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (170)
..+.+|||+|+.... ..+....+.+++|+|+++.... ...+... .+.|.++++||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 578899999851110 0111357889999998765321 1111111 1377899999999865433456666
Q ss_pred HHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880 138 EAKSREL--NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 138 ~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
...++.. +++++++|+++|.|++++|++|.+
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence 6666654 478999999999999999998754
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=3e-17 Score=117.93 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=91.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR- 72 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 72 (170)
.++|+++|.+|+|||||+|+|++........|..+.+.....+.+++. ...+.+||+||..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999987643222232222222222333332 1479999999987653
Q ss_pred ---cc---chhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH-----------------------------
Q 030880 73 ---SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV----------------------------- 107 (170)
Q Consensus 73 ---~~---~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 107 (170)
.+ ...+++++|++++|+|+++. ++++....+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 22 23357899999999999862 2222222111111
Q ss_pred -----------H-------------------Hh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880 108 -----------R-------------------TE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (170)
Q Consensus 108 -----------~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (170)
. .+ ....+|+++++|+.|..-........++.++...+..++.+|++.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 01 013589999999998642112235667888888899999999764
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.72 E-value=6e-18 Score=128.14 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=81.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEE--------------------------------
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-------------------------------- 50 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~-------------------------------- 50 (170)
.....+|+++|.+|+|||||+|+|++.... ....+++........
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 345689999999999999999999998753 222222211000000
Q ss_pred ----EEECCe-EEEEEEEeCCCccc-----------ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC
Q 030880 51 ----MYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD 114 (170)
Q Consensus 51 ----~~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 114 (170)
...++. ...+.+|||||... +...+..+++.+|++++|+|+++....+....++..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 000000 02589999999764 334556678899999999999875545555566555532 35
Q ss_pred CeEEEEEeCCCCCCcc
Q 030880 115 VIIVLVGNKTDLVEKR 130 (170)
Q Consensus 115 ~p~ivv~nK~D~~~~~ 130 (170)
.|+++|+||+|+....
T Consensus 219 ~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGEEEEEECGGGSCHH
T ss_pred CCEEEEEECCCccCHH
Confidence 8899999999997543
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.72 E-value=2.3e-20 Score=126.94 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=88.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEE------------EEEEEEC-Ce------------------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DR------------------ 56 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 56 (170)
...+|+++|.+|+|||||+++|+...+...+.++...+.. ......+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999987554433344333322 1111111 10
Q ss_pred -EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880 57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 57 -~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (170)
...+.++|++|.-... ..+-...+..+.+.|..+...... .. ... ...|.++++||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~-----~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI-----MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH-----hhcCCEEEEeccccCchhHHHHH
Confidence 1135555555521000 001112344556666432211100 00 011 13677999999998655445667
Q ss_pred HHHHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880 136 EGEAKSREL--NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 136 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++..+++.. +++++++|+++|.|++++|++|.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 220 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEK 220 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 777777654 579999999999999999998754
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=2.2e-17 Score=130.43 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=84.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CC----cccc--eeeeEEEEEEEE------------ECC
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LED 55 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~ 55 (170)
.....||+++|+.++|||||+++|+.... .+ +..+ +........... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 34567999999999999999999986411 00 0011 111111111111 234
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
..+.+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|.... . .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 4789999999999999999999999999999999999987777665554332 2 468999999999985
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=6.8e-18 Score=121.90 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=66.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--H
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--I 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 134 (170)
++.+.+|||||... ........+|++++|+|.+..+....+... + ...|.++|+||+|+.+..... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHH
Confidence 46799999999432 233446899999999998765444322211 1 236889999999986432221 1
Q ss_pred HHHHHHHh-------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 135 EEGEAKSR-------ELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 135 ~~~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.+...... ..+.+++.+|+++|.|+++++++|.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~ 280 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVER 280 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 11111111 11578999999999999999998753
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=3.3e-16 Score=118.53 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=79.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC------------------CC----cccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------------DN----TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (170)
+.-||+|+|..++|||||..+|+.... .+ +.....++......+.+ ..++++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeC
Confidence 356899999999999999999974211 01 11111111112222233 3478999999
Q ss_pred CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
||+..|.......++-+|++|+|+|+...-..+....| ..+.. .++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 99999999999999999999999999876433333344 33333 4699999999999753
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.67 E-value=2.6e-16 Score=113.60 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=92.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 70 (170)
++|.++|.+|+|||||++++.+........+..+.+.......+++ ....+.+||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997642111111111111111111111 235799999999876
Q ss_pred ccc----c---chhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH--------------------------
Q 030880 71 FRS----L---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV-------------------------- 107 (170)
Q Consensus 71 ~~~----~---~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 107 (170)
..+ + ....++++|++++|+|+++. +.+.....+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 432 2 22347899999999999852 1121111100000
Q ss_pred ---------H----H-------------------hc-CCCCeEEEEEeCCCCC--Cc-cccCHHHHHHHHhhcCCeEEEE
Q 030880 108 ---------R----T-------------------ER-GSDVIIVLVGNKTDLV--EK-RQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 108 ---------~----~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
. . +. ...+|+++++||.|.. +. .......++.+++..++.++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0 0 00 1237999999999742 21 1234567788888889999999
Q ss_pred ecCCCCChHHHh
Q 030880 152 SAKAGFNIKVCL 163 (170)
Q Consensus 152 s~~~~~~i~~~~ 163 (170)
||+...++.+++
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998866655443
No 200
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.67 E-value=4.3e-16 Score=110.10 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=82.7
Q ss_pred cccccccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-HHHHHHHHhhcC
Q 030880 68 QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN 145 (170)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (170)
++++..+...+++++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+...+. .++...+.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6778888888999999999999999986 88888999887654 469999999999997554322 355666777788
Q ss_pred CeEEEEecCCCCChHHHhhcCCCC
Q 030880 146 VMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 146 ~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
++++++||++|.|++++|+.+...
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHhhccCc
Confidence 999999999999999999988654
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.64 E-value=7.2e-17 Score=116.19 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=60.1
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (170)
++.+.++||+|... ........+|.+++|+|++.+........ .+ ...|.++++||+|+.+..... ..
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RI 233 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HH
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HH
Confidence 35789999999542 12445679999999999987543221211 11 235778999999985422110 11
Q ss_pred HHHHH---h-------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880 137 GEAKS---R-------ELNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 137 ~~~~~---~-------~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
...+. + ..+.+++.+|+++|.|+++++++|.+
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKD 275 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 11221 1 11457899999999999999998754
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=3.9e-16 Score=108.21 Aligned_cols=106 Identities=17% Similarity=0.051 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcccccccch------hhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
+.+.+|||||..+...... ..+.. +++++++|.... ..+.....+... .....+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence 5799999999876543221 23456 888888887543 222222211111 11123589999999999865
Q ss_pred ccccCHHHHHH----------------------------HHhhcC--CeEEEEecCCCCChHHHhhcCCC
Q 030880 129 KRQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
.... ++... +++..+ .+++++|++++.|+++++++|.+
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 253 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 253 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHH
Confidence 4321 11111 123333 48999999999999999998754
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.5e-14 Score=103.29 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=90.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cchhhhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIR 80 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~ 80 (170)
...+|.++|.|++|||||+|+|++........|+++.+.....+.+.+ .++.++|+||..+-.. .....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999998765545556666676666666666 5688999999543211 1223467
Q ss_pred CCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------ccccCHHHHHHHHhhcCC
Q 030880 81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE--------KRQVSIEEGEAKSRELNV 146 (170)
Q Consensus 81 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~ 146 (170)
++|++++|+|++++.. ++.+...+..+... -...|.+++.||.|... ......++.+.+...+.+
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 8999999999998733 22233333222111 14567788899999742 233456666666665554
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.60 E-value=3.8e-16 Score=112.23 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=62.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-- 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 134 (170)
++.+.++||||...... ...+.+|++++|+|++....+..+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 45799999999654332 34689999999999876543222111 10 1367799999999865322211
Q ss_pred HHHHHHHhhc-------CCeEEEEecCCCCChHHHhhcCCC
Q 030880 135 EEGEAKSREL-------NVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 135 ~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
++........ ..+++.+|+++|.|+++++++|.+
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 1222211121 357899999999999999988753
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=3.1e-15 Score=116.16 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeE----------------------------------------
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGID---------------------------------------- 45 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~---------------------------------------- 45 (170)
....+|+++|.+++|||||+|+|++..+.+... +++...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345699999999999999999999976632211 111000
Q ss_pred ----------EEEEEEEECCeEEEEEEEeCCCccc-------------ccccchhhh-cCCcEEEEEEeCCChhhHHhHH
Q 030880 46 ----------FLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTS 101 (170)
Q Consensus 46 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~ 101 (170)
.....+..++ ...+.++||||... ...+...++ ..+|++++|+|++++..-.+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000011111 12578999999543 112334444 5789999999998653222222
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH--hhcC-CeEEEEecCCCCChHHHhhcCC
Q 030880 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS--RELN-VMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.++..+ ...+.|+++|+||+|+.+............. ...+ ..++.+||++|.|++++++.+.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 223333 2356899999999999765443322111000 0123 3678899999999999887764
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.58 E-value=4.1e-16 Score=120.13 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCC------------Ccc--cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD--KFD------------NTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~--~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 73 (170)
.||+|+|+.++|||||..+|+.. ... +.. ..-.+.+.......+.-.+++++++|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 58999999999999999999742 110 000 00011122222222333456899999999999999
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
.....++-+|++|+|+|+...-..+.. ..+..+..+ ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999865222222 222333333 488899999999753
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=7.1e-14 Score=109.01 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=80.6
Q ss_pred CCCcCCCC-ceeEEEEcCCCCCHHHHHHHHhcC--------CCC----------CcccceeeeEEEEEEEEEC-----Ce
Q 030880 1 MAPVSALA-KYKLVFLGDQSVGKTSIITRFMYD--------KFD----------NTYQATIGIDFLSKTMYLE-----DR 56 (170)
Q Consensus 1 m~~~~~~~-~~~i~v~G~~~~GKstli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~ 56 (170)
|+...+.. --||+|+|+.++|||||..+|+.. ... .+.....++......+.+. ..
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 44444433 358999999999999999999742 110 0111112222222222222 23
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 129 (170)
.+.++++|||||..|.......++-+|++|+|+|+...-..+....| ..... .++|.++++||+|....
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~---~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK---YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---HTCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH---cCCCeEEEEccccccCc
Confidence 68999999999999999999999999999999999865333333333 33333 35899999999998544
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=96.21 Aligned_cols=102 Identities=7% Similarity=-0.059 Sum_probs=69.4
Q ss_pred CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHH---HHhc--CCCCeEEEEEeCC-CCCCccccCHHHHHH
Q 030880 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV---RTER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA 139 (170)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 139 (170)
+|++.++.+|..|++++|++|+|+|.++.+.++ .+..+.++ .... ..++|++|++||. |+.. ..+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 488999999999999999999999999886543 44444333 2222 2578999999995 6643 344444443
Q ss_pred HHh----hcCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880 140 KSR----ELNVMFIETSAKAGFNIKVCLMLHPNTV 170 (170)
Q Consensus 140 ~~~----~~~~~~~~~s~~~~~~i~~~~~~l~~~i 170 (170)
... ...+.+..|||.+|+|+.+.++||.+.+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 321 2356899999999999999999998764
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=1.8e-15 Score=108.37 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=60.3
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (170)
+..+.++||+|..+.. ......+|.+++++|.+..+..+.+.... . ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 4579999999965321 23357899999999986543221111111 1 13457777999974322221112
Q ss_pred HHHHHhh----------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880 137 GEAKSRE----------LNVMFIETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 137 ~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (170)
...+... .+.+++.+|++++.|++++++.|.+
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 2222221 1357889999999999999987743
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.47 E-value=6.9e-14 Score=101.49 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=51.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 72 (170)
...+|.++|.+|+|||||+|+|.+........|+.+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999987654333444444433333433332 2359999999977644
Q ss_pred c-------cchhhhcCCcEEEEEEeCCChh
Q 030880 73 S-------LIPSYIRDSSVAVVVYDVASRQ 95 (170)
Q Consensus 73 ~-------~~~~~~~~~~~~i~v~d~~~~~ 95 (170)
+ .+..+++++|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456789999999999998543
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.2e-11 Score=89.91 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=59.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER- 70 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 70 (170)
...++.++|++|+|||||+|.|++... .....|+++.+.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999998665 3333444444443334444431 13689999999543
Q ss_pred ------ccccchhhhcCCcEEEEEEeCCC
Q 030880 71 ------FRSLIPSYIRDSSVAVVVYDVAS 93 (170)
Q Consensus 71 ------~~~~~~~~~~~~~~~i~v~d~~~ 93 (170)
+.......++++|+++.++|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455789999999999863
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.39 E-value=5.6e-13 Score=92.14 Aligned_cols=102 Identities=6% Similarity=-0.088 Sum_probs=72.3
Q ss_pred CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHH---HHH-Hhc-CCCCeEEEEEeC-CCCCCccccCHHHHH
Q 030880 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID---EVR-TER-GSDVIIVLVGNK-TDLVEKRQVSIEEGE 138 (170)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 138 (170)
.+||+..+.+|..|++++|++|+|+|.++.+.++ .+..+. .+. ... ..++|++|++|| .|+.. ..+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4688999999999999999999999999987544 333332 222 222 267999999996 58743 34444444
Q ss_pred HHHh----hcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 139 AKSR----ELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 139 ~~~~----~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+... .....+..|||.+|+|+.+.++||.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 3321 234689999999999999999998654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.20 E-value=1.4e-12 Score=94.56 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=82.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC------CCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI 75 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 75 (170)
..+++++|.+|+|||||+|+|++. .......+.++.+. ....... .+.++||||...... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 457999999999999999999975 22222222222222 2222232 278999999543221 11
Q ss_pred hhhh---cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880 76 PSYI---RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (170)
Q Consensus 76 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (170)
...+ +..+.++++.+....-.+..+.+ +......+.|+++++||.|..+..... .....+.+..|..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCC
Confidence 1222 67899999998743211111111 111223568999999999987554433 334455666776555555
Q ss_pred cCCCCChH
Q 030880 153 AKAGFNIK 160 (170)
Q Consensus 153 ~~~~~~i~ 160 (170)
+....++.
T Consensus 312 ~~~~~~~~ 319 (369)
T 3ec1_A 312 KRYAAEFP 319 (369)
T ss_dssp GGGTTTCC
T ss_pred chhhhhcc
Confidence 55544443
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.17 E-value=2.1e-11 Score=91.31 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=82.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc------CCC----CCccccee-----------eeEEEEEEEE-------------E
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQATI-----------GIDFLSKTMY-------------L 53 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~------~~~----~~~~~~~~-----------~~~~~~~~~~-------------~ 53 (170)
....|+++|.+|+||||++++|.. .+. .+.+.+.. ..++...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999983 211 00000000 0111110000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-cchh---h--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCC
Q 030880 54 EDRTVRLQLWDTAGQERFRS-LIPS---Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDL 126 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 126 (170)
....+.+.|+||||...... .+.. . ...+|.+++|+|+....... .....+.. .+|+ .+|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 00346799999999653221 1111 1 23789999999998754321 11222222 1564 788899998
Q ss_pred CCccccCHHHHHHHHhhcCCeE------------------EEEecCCCCC-hHHHhhcCCC
Q 030880 127 VEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKVCLMLHPN 168 (170)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~l~~ 168 (170)
...... +.......+.++ ..+|+..|.| +.++++++.+
T Consensus 253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 633221 222223333332 3468888999 8888887764
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.15 E-value=3.9e-11 Score=86.94 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=71.9
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----Hh
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR 142 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 142 (170)
..+.|.+....+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.+.. ...++..++ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35778888899999999999999999864 34555555554 378999999999996543 333444443 56
Q ss_pred hcCC---eEEEEecCCCCChHHHhhcCC
Q 030880 143 ELNV---MFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 143 ~~~~---~~~~~s~~~~~~i~~~~~~l~ 167 (170)
..|+ .++.+||++|.|++++++.|.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~ 155 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIE 155 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence 6677 799999999999999998874
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2e-10 Score=84.15 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=69.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc----cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------------
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------------ 73 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------ 73 (170)
++++++|++|+|||||++.|.+....... .+..............+-...++++|++|......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999886432111 11111111111111122234789999988542210
Q ss_pred --cchhh-------------hcC--CcE-EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--
Q 030880 74 --LIPSY-------------IRD--SSV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-- 133 (170)
Q Consensus 74 --~~~~~-------------~~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 133 (170)
.+..+ ... +|+ +.++.|...+-+..+ +..+... ..++|+|+|.||+|...+.+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence 01111 111 233 445556553322222 1222222 2579999999999986544322
Q ss_pred HHHHHHHHhhcCCeEEEEec
Q 030880 134 IEEGEAKSRELNVMFIETSA 153 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~ 153 (170)
...+.......|+.++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 12233333455777777774
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.10 E-value=3.6e-12 Score=92.37 Aligned_cols=136 Identities=12% Similarity=0.125 Sum_probs=75.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----cchh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIPS 77 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~ 77 (170)
..+++++|.+|+|||||+|+|++..... ...+.+ +.......... .+.++||||...... +...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT--TLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCe--ecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence 3689999999999999999999753111 111222 22222222232 278999999543221 1111
Q ss_pred h------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEE
Q 030880 78 Y------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 78 ~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
. .+..+.++++++....-....+.. +......+.|+++++||.|..+.... ......+.+..|..+...
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence 1 256788888888743211111111 11122356899999999998755433 233445555666544444
Q ss_pred ecC
Q 030880 152 SAK 154 (170)
Q Consensus 152 s~~ 154 (170)
++.
T Consensus 310 ~~~ 312 (368)
T 3h2y_A 310 TPE 312 (368)
T ss_dssp CHH
T ss_pred chh
Confidence 443
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=78.79 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=67.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc------ce-eeeEEEEEEEEEC--CeEEEEEEEeCCCcccccc------
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ------AT-IGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------ 73 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~-~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~------ 73 (170)
.++++++|++|+|||||++.+.+...+.... +. ............. +-...++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998743322110 00 0000000111111 1123689999998432100
Q ss_pred cc----------------------hhhhcCCcEEEEEEeCC-ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 74 LI----------------------PSYIRDSSVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 74 ~~----------------------~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
.. ...+..+++.+++.|.. .+-.-.+ ...+..+ ... ++++++.+|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence 00 01122468888888854 2211111 2222223 223 8999999999986543
Q ss_pred ccC--HHHHHHHHhhcCCeEE
Q 030880 131 QVS--IEEGEAKSRELNVMFI 149 (170)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~ 149 (170)
+.. ...........++.++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFY 177 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 221 1223333445555544
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=1.4e-10 Score=84.02 Aligned_cols=94 Identities=21% Similarity=0.247 Sum_probs=70.0
Q ss_pred CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----Hh
Q 030880 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR 142 (170)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 142 (170)
.++.|.+....++++++++++|+|++++.+ .|..++.... .+.|+++|+||+|+.+.. ...+...++ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 477888888888899999999999998864 3444444443 378999999999997543 233334333 55
Q ss_pred hcCC---eEEEEecCCCCChHHHhhcCC
Q 030880 143 ELNV---MFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 143 ~~~~---~~~~~s~~~~~~i~~~~~~l~ 167 (170)
..|. .++.+||++|.|++++++.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~ 157 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAIN 157 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence 6676 789999999999999998774
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.94 E-value=1e-09 Score=76.78 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=65.3
Q ss_pred EEeCCCccc-ccccchhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH
Q 030880 62 LWDTAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (170)
Q Consensus 62 i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (170)
+-..|||.. ........++++|+++.|+|+.++.+... +.+++ .++|.++++||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 445788763 33455666899999999999999876643 33332 4689999999999975321 22333
Q ss_pred HHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880 139 AKSRELNVMFIETSAKAGFNIKVCLMLHP 167 (170)
Q Consensus 139 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (170)
.+.+..+++++.+|++++.|++++++.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASK 101 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHH
Confidence 44445678999999999999999887653
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=6.5e-09 Score=76.18 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=78.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccee-eeEE--EEEEEEECCeEEEEEEEeCCCcccccccchhh-----hc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 80 (170)
...++++|++|+|||||+|.+.+-..+....... +.+. ...... ......++++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999843322211111 0000 001111 1111157899999854222112222 23
Q ss_pred CCcEEEEEEeCCC--hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC--C-----ccccCH----HHHHHHH----hh
Q 030880 81 DSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV--E-----KRQVSI----EEGEAKS----RE 143 (170)
Q Consensus 81 ~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~-----~~~~~~----~~~~~~~----~~ 143 (170)
..+..++ ++... ++.. .....+.. .+.|+++|.||.|+. + -..... +.+.++. .+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 77652 2111 11222222 358999999999864 1 111122 2233332 12
Q ss_pred cC---CeEEEEec--CCCCChHHHhhcCC
Q 030880 144 LN---VMFIETSA--KAGFNIKVCLMLHP 167 (170)
Q Consensus 144 ~~---~~~~~~s~--~~~~~i~~~~~~l~ 167 (170)
.+ ..++.+|+ .++.|++++.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 36788899 56667888777654
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.82 E-value=1.9e-08 Score=74.26 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=57.4
Q ss_pred eEEEEEEEeCCCcccccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC-e-EEEEEeCCCCC
Q 030880 56 RTVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLV 127 (170)
Q Consensus 56 ~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~ 127 (170)
..+.+.++||||...... ... ..+..+|.+++|.|+..... .......+ . ... | ..+|.||.|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCc
Confidence 346789999999654211 111 11236899999999875532 22222222 1 234 5 78889999974
Q ss_pred CccccCHHHHHHHHhhcCCeEEE------------------EecCCCCC-hHHHhhcCCC
Q 030880 128 EKRQVSIEEGEAKSRELNVMFIE------------------TSAKAGFN-IKVCLMLHPN 168 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~------------------~s~~~~~~-i~~~~~~l~~ 168 (170)
... ..+.......+.++.. +|+..|.| +..+++.+.+
T Consensus 252 ~~~----g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 252 AKG----GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp STT----HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred cch----HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 322 2233455556655443 35566666 6666665543
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.81 E-value=1.1e-08 Score=75.41 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=79.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC------CC----CCcccc-----------eeeeEEEEEEEEE-------------
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD------KF----DNTYQA-----------TIGIDFLSKTMYL------------- 53 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~------------- 53 (170)
++..|+++|++|+||||++..|... +. .+.+.+ ..+.+.+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999988641 10 000000 0011111100000
Q ss_pred CCeEEEEEEEeCCCcccccccc-h-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880 54 EDRTVRLQLWDTAGQERFRSLI-P-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (170)
Q Consensus 54 ~~~~~~~~i~D~~g~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 127 (170)
....+.+.|+||+|........ . .....+|.+++|.|+...+.... ....+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCc
Confidence 0123678999999944322111 1 11336899999999886543222 22233222 13456788999975
Q ss_pred CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
... ..+.......+.++..++. |++++++
T Consensus 253 ~~g----G~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AKG----GGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSH----HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred ccc----cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 432 3355556677888777775 8887654
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=1.3e-08 Score=70.44 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCCcccc-cccchhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH
Q 030880 65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS 141 (170)
Q Consensus 65 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 141 (170)
.|||... .......++++|+++.|+|+.++.+... +. ++ ++|.++|+||+|+.+... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 3666533 2345666889999999999998866543 22 21 689999999999975421 12333444
Q ss_pred hhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880 142 RELNVMFIETSAKAGFNIKVCLMLHPNT 169 (170)
Q Consensus 142 ~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (170)
+..+.++ .+|++++.|++++++.+.+.
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 5567887 99999999999999988764
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.66 E-value=2.9e-08 Score=69.38 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=35.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 69 (170)
..++++++|.+|+|||||+|+|.+...... ..+..+.... ...... .+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 468999999999999999999998663222 2222222221 122222 58899999954
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=1.2e-08 Score=70.67 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 70 (170)
++++++|.+|+|||||+|+|.+...... .++.+.+......... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5999999999999999999998665322 1222212111122222 2578999999654
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=3.1e-08 Score=69.86 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=65.1
Q ss_pred cccchhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcCCeE
Q 030880 72 RSLIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMF 148 (170)
Q Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 148 (170)
..+....+.++|.+++|+|+.+|.. ...+.+++.... ..++|.++|+||+|+.+.... ..+......+..|.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445556889999999999997753 333444443332 246888999999999765320 1233344444568899
Q ss_pred EEEecCCCCChHHHhhcCCC
Q 030880 149 IETSAKAGFNIKVCLMLHPN 168 (170)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~ 168 (170)
+.+|+.++.|++++++.+..
T Consensus 154 ~~~sa~~~~g~~~L~~~~~G 173 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPHFQD 173 (307)
T ss_dssp EECCHHHHTTCTTTGGGGTT
T ss_pred EEEecCCCCCHHHHHhhcCC
Confidence 99999999999998876643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.60 E-value=7.3e-08 Score=71.00 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCccc--ccc-cc---hh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880 57 TVRLQLWDTAGQER--FRS-LI---PS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (170)
Q Consensus 57 ~~~~~i~D~~g~~~--~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 128 (170)
.+.+.++||||... ... .. .. .....+.+++|.|+...+.... ....+.... .+..|+.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc
Confidence 45788999999543 111 11 11 1225689999999876533222 223333222 34678889999753
Q ss_pred ccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
. ...+.......+.++..++. |+++++
T Consensus 253 ~----~G~als~~~~~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 253 K----GGGALSAVVATGATIKFIGT--GEKIDE 279 (433)
T ss_dssp C----HHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred c----chHHHHHHHHHCCCEEEEEC--CCChHh
Confidence 2 24455566677888877775 777753
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.44 E-value=9.5e-07 Score=62.17 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=57.1
Q ss_pred EEEEEEEeCCCccc--ccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880 57 TVRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127 (170)
Q Consensus 57 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 127 (170)
.+.+.++||||... ... +.. .....+|.+++|.|+.... +.......+.. ..| ..++.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45799999999665 211 111 1245789999999986432 22222222222 245 67788999974
Q ss_pred CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
.. ...+.......+.++..++ +|++++++
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred cc----hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 32 2345567777888877766 57777654
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.42 E-value=2e-07 Score=71.11 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=38.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccce--eeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQAT--IGIDFLSKTMYL-EDRTVRLQLWDTAGQER 70 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~ 70 (170)
+..+|+++|.+++|||||+|+|++.... .....+ .+.....+.... ......+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4578999999999999999999987532 111111 111111111111 12345789999999653
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.34 E-value=3.5e-06 Score=60.06 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=53.1
Q ss_pred EEEEEEeCCCcccccccchh------hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880 58 VRLQLWDTAGQERFRSLIPS------YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 131 (170)
..+.++|++|.......... ..-..|-.+++.|..... ++...+..+.... + ...++.||.|....
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~a~-- 283 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDADAR-- 283 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGCSC--
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCccc--
Confidence 34667999996433221111 112578889999976543 2223333333222 2 23667799996332
Q ss_pred cCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880 132 VSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162 (170)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (170)
...+.......+.++..++ +|++++++
T Consensus 284 --~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 --GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp --CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred --hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2335566677788777776 77777543
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.33 E-value=1.9e-06 Score=61.99 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=56.8
Q ss_pred hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEEEEecCCC
Q 030880 79 IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAG 156 (170)
Q Consensus 79 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 156 (170)
..++|.+++|.+.. |. +...+.+++..... .++|.+||+||+|+.+.... ..++........|++++.+|+.++
T Consensus 128 ~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 128 AANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 67999999887764 54 33345555444333 25788999999999754321 012223333467889999999999
Q ss_pred CChHHHhhcCC
Q 030880 157 FNIKVCLMLHP 167 (170)
Q Consensus 157 ~~i~~~~~~l~ 167 (170)
.|++++...+.
T Consensus 204 ~gl~~L~~~~~ 214 (358)
T 2rcn_A 204 DGLKPLEEALT 214 (358)
T ss_dssp BTHHHHHHHHT
T ss_pred cCHHHHHHhcC
Confidence 99998876543
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.33 E-value=1.2e-06 Score=67.51 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.28 E-value=5.5e-08 Score=72.71 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=58.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------h
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLI--------P 76 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 76 (170)
..+..|+++|.+|+||||+.++|....... ..++..+..........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999987542211 111111110000000111112346788888632 23332 5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh
Q 030880 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE 110 (170)
Q Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 110 (170)
.++...++.++|+|.++. +.+.-..|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 556678888999999987 455556665555443
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.05 E-value=3.2e-06 Score=55.38 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
|.+....+.-.++++|++|+|||||++.+.+.
T Consensus 1 ~~m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -----CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 55555556667999999999999999999875
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=1.6e-05 Score=58.87 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..-|.|+|++++|||+|+|+|++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 34588899999999999999985
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=1.1e-05 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.82 E-value=0.00027 Score=52.31 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCc
Q 030880 57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 129 (170)
.+.+.|+||||...... ... .....++.+++|.|+...... ......+.. ..+ .-++.||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 46799999999544321 111 123478899999998754322 222222222 133 2457899997432
Q ss_pred cccCHHHHHHHHhhcCCeEEEE
Q 030880 130 RQVSIEEGEAKSRELNVMFIET 151 (170)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
. ..+.......+.++..+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 2 22334555556554433
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.77 E-value=2e-05 Score=52.01 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=22.7
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
++.+..--++++|++|+|||||++.|...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34445556889999999999999999864
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.76 E-value=1.6e-05 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
--++++|++|+|||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.71 E-value=2e-05 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=3.4e-05 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...++++|++|+||||+++.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998764
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.64 E-value=4e-05 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.....|++.|++|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 244
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.64 E-value=2.7e-05 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 030880 11 KLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~ 30 (170)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.63 E-value=3e-05 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
++++|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999853
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=3.3e-05 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.61 E-value=3.7e-05 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.60 E-value=3.7e-05 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
--++++|++|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999998743
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.59 E-value=4.4e-05 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..-.++++|++|+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998864
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.59 E-value=4.5e-05 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
....++++|++||||||+++.|....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999987654
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.59 E-value=3.8e-05 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
No 252
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.58 E-value=2.7e-05 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 468999999999999999998754
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.57 E-value=6e-05 Score=49.12 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 5 ~~~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+.....+|+++|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445568999999999999999988654
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.57 E-value=4.2e-05 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|++|+|||||++.+.+-.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999988643
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.56 E-value=4.9e-05 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
|+++||+|+||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 256
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.55 E-value=0.00016 Score=48.20 Aligned_cols=86 Identities=7% Similarity=-0.014 Sum_probs=56.3
Q ss_pred EEEEEEEeCCCc-ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880 57 TVRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (170)
Q Consensus 57 ~~~~~i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (170)
.+.+.++|+|+. .. ......+..+|.+|++...+ ..+...+...+..+.... +.++.++.|+.+..... ...
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence 467899999975 32 33455678899999998865 556666666666665532 45678889999864301 134
Q ss_pred HHHHHHhhcCCeEE
Q 030880 136 EGEAKSRELNVMFI 149 (170)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (170)
+..+..++++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 45555555666544
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.55 E-value=5.4e-05 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+...+.++|+.|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998765
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.54 E-value=4.8e-05 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
--++++|++|+|||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998653
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=6.3e-05 Score=50.02 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....+.|+|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999997764
No 260
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.49 E-value=7.1e-05 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.49 E-value=6.2e-05 Score=51.13 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999887643
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=7.2e-05 Score=47.92 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.4
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 030880 10 YKLVFLGDQSVGKTSIITRF 29 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l 29 (170)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=7.2e-05 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..-|+++|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999999754
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.47 E-value=7.2e-05 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999888754
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.47 E-value=8.7e-05 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=7.3e-05 Score=48.00 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.44 E-value=8.1e-05 Score=48.61 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.43 E-value=7.8e-05 Score=50.28 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.43 E-value=8.8e-05 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.43 E-value=8.3e-05 Score=47.60 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=0.00011 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=9.7e-05 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.42 E-value=0.00013 Score=48.19 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 6 ALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 6 ~~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...++.|++.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.41 E-value=9.5e-05 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.41 E-value=9.7e-05 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988643
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.41 E-value=9.3e-05 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988763
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.40 E-value=0.00011 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
++..|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.40 E-value=0.00011 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 030880 9 KYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~ 30 (170)
...++++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 279
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.39 E-value=0.00014 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.39 E-value=9.9e-05 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997654
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.39 E-value=9.8e-05 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988643
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.39 E-value=0.0001 Score=49.33 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.38 E-value=0.0001 Score=50.93 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 284
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=50.15 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.38 E-value=9.8e-05 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
=.++++|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999998876
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.37 E-value=0.00015 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+...|++.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 287
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=0.00019 Score=47.29 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....|++.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.36 E-value=0.00012 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.36 E-value=0.00011 Score=50.83 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.+.++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.36 E-value=0.00011 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 291
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.35 E-value=0.00013 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.35 E-value=0.00015 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=0.00016 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+.-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.34 E-value=0.00012 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00015 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 296
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.34 E-value=0.00012 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999987643
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.34 E-value=0.00014 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988643
No 298
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.34 E-value=0.00012 Score=50.06 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.34 E-value=0.00012 Score=48.27 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|+++|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 300
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00011 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 301
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988643
No 302
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.32 E-value=0.00018 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.+++|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 304
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00015 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 305
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.32 E-value=0.00013 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987643
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.31 E-value=0.00015 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999864
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.31 E-value=0.00014 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.31 E-value=0.00014 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.=.++|+|++|+|||||++.|.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999998874
No 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.30 E-value=0.00015 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.30 E-value=0.00014 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.29 E-value=0.00015 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988643
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.29 E-value=0.00015 Score=50.36 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.29 E-value=0.00011 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.00017 Score=46.95 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.28 E-value=0.00016 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
.+|+++|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=0.00018 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~~ 35 (170)
.++++|++|+|||||+|.+.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 5789999999999999999875443
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00016 Score=47.76 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.|+++|++|+||||+++.|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999988653
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.28 E-value=0.00025 Score=47.00 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+...|.++|++|+||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999998764
No 319
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.28 E-value=0.00016 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 030880 11 KLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~ 30 (170)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00017 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 321
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.28 E-value=0.00016 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00018 Score=48.26 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|.++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 323
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.27 E-value=0.00054 Score=42.67 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999887653
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.27 E-value=0.00016 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 325
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.27 E-value=0.00028 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=19.4
Q ss_pred CCcee-EEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYK-LVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~-i~v~G~~~~GKstli~~l~~ 31 (170)
.++.| |+++|+|||||+|....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445 45689999999999988865
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.26 E-value=0.00017 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987643
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00016 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 328
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.0002 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.25 E-value=0.00025 Score=50.20 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....-+.|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456789999999999999998765
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.00021 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.24 E-value=0.0001 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=14.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh-cC
Q 030880 11 KLVFLGDQSVGKTSIITRFM-YD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~-~~ 32 (170)
-+.++|++|+|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 53
No 332
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.24 E-value=0.00027 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-.++++|++|+|||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457899999999999999998 543
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00012 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=16.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 334
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00026 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=0.00032 Score=45.62 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.+...|+++|.+|+||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 336
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00022 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988754
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.21 E-value=0.00025 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
+.|.++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.20 E-value=0.00025 Score=45.25 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.20 E-value=0.00028 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...|++.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 340
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.19 E-value=0.0002 Score=51.60 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988763
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.19 E-value=0.00021 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
-++++|++|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 378999999999999999887543
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=0.00028 Score=46.11 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.18 E-value=0.00025 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.17 E-value=0.00019 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-+++++|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.00027 Score=47.46 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00011 Score=47.44 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+.++|++|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 347
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.15 E-value=0.00026 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+..|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.14 E-value=0.00026 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999988644
No 349
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.14 E-value=0.00025 Score=49.26 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
+++.|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 350
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.0003 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.14 E-value=0.00034 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...-|.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998865
No 352
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.13 E-value=0.00025 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998764
No 353
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.13 E-value=0.00044 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....-|.|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987653
No 354
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.12 E-value=0.00034 Score=47.87 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...+.|.|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998754
No 355
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.12 E-value=0.00028 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999988643
No 356
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.12 E-value=0.00027 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.++++|++|||||||++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34688999999999999998874
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.12 E-value=0.00029 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998744
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=0.00037 Score=45.80 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
....|.+.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999988764
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00029 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988643
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.11 E-value=0.00029 Score=48.31 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.11 E-value=0.00018 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
=.++++|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 35899999999999999988764
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.10 E-value=0.00028 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00019 Score=45.20 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+.++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988764
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.10 E-value=0.00034 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+.++|++|+|||||+.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998863
No 365
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.00031 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.09 E-value=0.00046 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...-+.++|++|+|||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.09 E-value=0.00047 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|++|+|||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 368
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.09 E-value=0.00032 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-+.++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 37899999999999999888643
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00031 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.--++++|++|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998875
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.09 E-value=0.00045 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~ 30 (170)
..++-+.++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998774
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.08 E-value=0.00033 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999988643
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.08 E-value=0.00032 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999988654
No 373
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.08 E-value=0.00032 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.++++|++|||||||++.+.+-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998763
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.07 E-value=0.00036 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
++|++.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00042 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+|++.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.06 E-value=0.00038 Score=45.57 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.00039 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.06 E-value=0.00044 Score=47.59 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.04 E-value=0.00034 Score=51.52 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998864
No 380
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.03 E-value=0.00035 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|++|||||||++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998644
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.03 E-value=0.00039 Score=45.05 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.03 E-value=0.00047 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999998865
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.00043 Score=44.31 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.00046 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.++.|.+.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.02 E-value=0.0005 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...-+.++|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998765
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.02 E-value=0.00053 Score=48.67 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.0005 Score=47.10 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 030880 10 YKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~ 30 (170)
..|.++|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.00062 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~ 30 (170)
..+.|++.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 389
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.01 E-value=0.00043 Score=45.24 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998875
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.00 E-value=0.0004 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988763
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.00 E-value=0.00026 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988643
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.99 E-value=0.00041 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999998876
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.98 E-value=0.00016 Score=48.03 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-|++.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.98 E-value=0.00058 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
++.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.97 E-value=0.00049 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998864
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.97 E-value=0.00046 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998764
No 397
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.96 E-value=0.00037 Score=44.90 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00048 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998874
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.95 E-value=0.00059 Score=43.54 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
+|.+.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998854
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.95 E-value=0.00069 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 401
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.00057 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00051 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.--++++|++|+||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999998875
No 403
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.90 E-value=0.00066 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00051 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-.++++|+.|+|||||++.+.+-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 468999999999999999988643
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.89 E-value=0.00091 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...-|++.|++|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467899999999999999988764
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.88 E-value=0.00027 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988644
No 407
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.88 E-value=0.00093 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+.-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999988753
No 408
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.88 E-value=0.0019 Score=47.94 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 030880 10 YKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~ 30 (170)
.=|.|+|+.++|||+|+|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 456689999999999999664
No 409
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.00073 Score=42.16 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
....|++.|++|+|||++++.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999987643
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.87 E-value=0.00059 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.--++++|++|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44688999999999999998865
No 411
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.87 E-value=0.00069 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+..-|.+.|+.|+|||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999988764
No 412
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.0008 Score=46.05 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+-.+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999988753
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.85 E-value=0.00047 Score=48.92 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-++++|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 36788999999999999999653
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.84 E-value=0.00084 Score=42.20 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030880 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~ 30 (170)
.+++|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.00075 Score=44.85 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00075 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.|+++|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.81 E-value=0.00068 Score=47.45 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.81 E-value=0.0011 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...|++.|++|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998864
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00078 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.81 E-value=0.00089 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.76 E-value=0.00087 Score=48.17 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
=++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 422
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.75 E-value=0.0012 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986654
No 423
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.71 E-value=0.0016 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..-|+++|++||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 455888999999999999998753
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.71 E-value=0.0014 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.00098 Score=44.62 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.001 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0012 Score=45.79 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998754
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.68 E-value=0.001 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999998875
No 429
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.67 E-value=0.0014 Score=43.06 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+.|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357799999999999999998864
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.66 E-value=0.0014 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.+++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.66 E-value=0.0012 Score=46.13 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 432
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.65 E-value=0.0018 Score=44.74 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999988764
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.65 E-value=0.0016 Score=49.53 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
=.++++|+.|+|||||++.+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998744
No 434
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.64 E-value=0.0013 Score=43.37 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
...|+++|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998654
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.63 E-value=0.0017 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+.-++|+|++|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578899999999999999875
No 436
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.63 E-value=0.00098 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999887764
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.62 E-value=0.0012 Score=49.50 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.61 E-value=0.0012 Score=48.90 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
=++.++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999988754
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.60 E-value=0.0012 Score=45.81 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998875
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.60 E-value=0.0017 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.60 E-value=0.0012 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998763
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.60 E-value=0.0012 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58899999999999999987643
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.59 E-value=0.0013 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.59 E-value=0.0014 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030880 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~ 30 (170)
.+++|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999876
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0015 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
++.|.+.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0017 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-+.++|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 447
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.58 E-value=0.0022 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988753
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.54 E-value=0.0019 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988643
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.002 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.+.++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999998743
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.54 E-value=0.0013 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+..-|++.|++|+||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446688999999999999998865
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.52 E-value=0.0017 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.51 E-value=0.0015 Score=45.88 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=49.6
Q ss_pred EEEEEEEeCCCccccccc-c---hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880 57 TVRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~-~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 130 (170)
.+.+.++||+|....... . ...+. ..+.+++++|.+.. ...+..+...+. ..+. .-++.||.|.....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~~ 255 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTSL 255 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSCC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccch
Confidence 357899999996543221 1 11222 36778889987643 233333333222 1122 24556999975332
Q ss_pred ccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (170)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (170)
..+.......+.++..++ .|+++
T Consensus 256 ----g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 256 ----GSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp ----HHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred ----hHHHHHHHHHCcCEEEEE--CCCCC
Confidence 356666777777654443 34554
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0015 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988763
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0021 Score=43.48 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.....|.++|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.48 E-value=0.002 Score=43.49 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+++.++|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 456
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.48 E-value=0.0021 Score=41.72 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030880 12 LVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~ 32 (170)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 457
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.47 E-value=0.0024 Score=42.91 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=21.4
Q ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880 4 VSALAKYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 4 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 31 (170)
+......-|++.|..|+||||+++.|..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344566789999999999999998864
No 458
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0018 Score=43.72 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
-+++.|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999887754
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.0019 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.+++.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.45 E-value=0.0019 Score=45.63 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=49.4
Q ss_pred EEEEEEeCCCcccccccc-------hhhh-----cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880 58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (170)
Q Consensus 58 ~~~~i~D~~g~~~~~~~~-------~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 125 (170)
+.+.++|+||........ ...+ ...+.+++|.|..... +.+.. ...+... .++ .-++.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~--~~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA--VNV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH--SCC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc--CCC-CEEEEeCCC
Confidence 468899999953221111 1111 2478889999986332 12221 2233222 122 245569999
Q ss_pred CCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161 (170)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (170)
..... ..+.......+.++..++. |+.+++
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 64332 3366677777877666543 444544
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.44 E-value=0.0027 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.+.++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999998743
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.43 E-value=0.0026 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35788999999999999999754
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.43 E-value=0.0013 Score=50.70 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58899999999999999987643
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0025 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
.+.++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0015 Score=46.75 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030880 12 LVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~ 31 (170)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998766
No 466
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.41 E-value=0.0022 Score=45.50 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998753
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0019 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 468
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.40 E-value=0.0014 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
=.++++|++|+|||||++.+.+-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 368999999999999999887643
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.40 E-value=0.0027 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
.+.++|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 470
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.002 Score=45.80 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56999999999999999998764
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.39 E-value=0.003 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~~ 34 (170)
.+.++|+.|+|||||++.+.+-..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 472
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.39 E-value=0.0059 Score=40.01 Aligned_cols=86 Identities=8% Similarity=0.063 Sum_probs=55.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCccccCH
Q 030880 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSI 134 (170)
Q Consensus 57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~ 134 (170)
.+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+.... .++.++.+|.|+.+.... ..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~ 147 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---ML 147 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HH
Confidence 3678999999754 344556677899999999876443 55666656554433 245677899999985322 12
Q ss_pred HHHHHHHhhcCCeEE
Q 030880 135 EEGEAKSRELNVMFI 149 (170)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (170)
.+..+..++++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 345555555665544
No 473
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.38 E-value=0.002 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
-+.++|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998653
No 474
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.37 E-value=0.0012 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~~ 33 (170)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999877543
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.35 E-value=0.0026 Score=42.07 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030880 12 LVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~ 30 (170)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999775
No 476
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.34 E-value=0.0026 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 030880 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (170)
Q Consensus 7 ~~~~~i~v~G~~~~GKstli~~l~ 30 (170)
...+|++++|..+|||||++.++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 457999999999999999998553
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.31 E-value=0.0017 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.002 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 479
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.011 Score=39.86 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=19.0
Q ss_pred eEEEE--cCCCCCHHHHHHHHhcCC
Q 030880 11 KLVFL--GDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 11 ~i~v~--G~~~~GKstli~~l~~~~ 33 (170)
||+|+ |+++.||++|++++.+..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 45555 999999999999999864
No 480
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0024 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 030880 10 YKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~ 31 (170)
--+++.||||+|||+|++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999875
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.30 E-value=0.0029 Score=45.59 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
....+++.|++|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.28 E-value=0.0028 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998765
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0032 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356889999999999999988753
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.28 E-value=0.0032 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998654
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.27 E-value=0.0033 Score=40.48 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
.-+++.|++|+||||+.-.|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45899999999999999999874
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.27 E-value=0.0026 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 487
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.27 E-value=0.0031 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
....+++.|++|+|||++++.+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988753
No 488
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0033 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+-.|++.||||+|||.|++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 489
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.25 E-value=0.0027 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5788999999999999998754
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.24 E-value=0.0021 Score=44.18 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
+...|++.|..|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999988653
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0038 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q 030880 12 LVFLGDQSVGKTSIITRFMYDKFD 35 (170)
Q Consensus 12 i~v~G~~~~GKstli~~l~~~~~~ 35 (170)
+.++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 689999999999999999875433
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.0027 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0028 Score=46.90 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
++--|++.||||+|||+|++.+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998753
No 494
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.0047 Score=44.41 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..+++++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999986654
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.23 E-value=0.0011 Score=45.52 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 030880 11 KLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~ 31 (170)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 496
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.21 E-value=0.0026 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 8 ~~~~i~v~G~~~~GKstli~~l~~~ 32 (170)
..-+++++|++|+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999987653
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.19 E-value=0.0015 Score=45.72 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMY 31 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~ 31 (170)
..-|.|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998764
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.16 E-value=0.003 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 030880 11 KLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 11 ~i~v~G~~~~GKstli~~l~~~ 32 (170)
.++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999988753
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.16 E-value=0.0034 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (170)
Q Consensus 9 ~~~i~v~G~~~~GKstli~~l~~~~ 33 (170)
...+++.|++|+|||+|++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4579999999999999999987653
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0033 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 030880 10 YKLVFLGDQSVGKTSIITRFMYD 32 (170)
Q Consensus 10 ~~i~v~G~~~~GKstli~~l~~~ 32 (170)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
Done!