Query 030881
Match_columns 170
No_of_seqs 113 out of 1645
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 4.7E-35 1E-39 212.1 16.9 164 6-169 73-236 (236)
2 PTZ00056 glutathione peroxidas 100.0 8.1E-35 1.8E-39 207.6 17.2 164 5-169 12-180 (199)
3 PLN02412 probable glutathione 100.0 2.9E-34 6.4E-39 199.8 18.0 163 8-170 5-167 (167)
4 cd00340 GSH_Peroxidase Glutath 100.0 5.1E-33 1.1E-37 191.1 16.1 150 12-162 2-151 (152)
5 PRK10606 btuE putative glutath 100.0 9.6E-33 2.1E-37 193.6 17.4 158 10-168 3-182 (183)
6 PTZ00256 glutathione peroxidas 100.0 4E-32 8.6E-37 191.8 17.8 165 5-169 13-183 (183)
7 TIGR02540 gpx7 putative glutat 100.0 6.5E-31 1.4E-35 180.8 17.0 151 12-167 2-153 (153)
8 COG0386 BtuE Glutathione perox 100.0 5.5E-29 1.2E-33 164.8 15.8 158 11-169 4-162 (162)
9 KOG1651 Glutathione peroxidase 100.0 8.7E-27 1.9E-31 156.2 14.7 163 7-169 9-171 (171)
10 COG1225 Bcp Peroxiredoxin [Pos 99.9 5.1E-27 1.1E-31 158.8 13.1 147 5-166 3-155 (157)
11 PF08534 Redoxin: Redoxin; In 99.9 1.7E-27 3.6E-32 162.6 10.5 133 7-155 1-136 (146)
12 PRK09437 bcp thioredoxin-depen 99.9 7.9E-27 1.7E-31 160.6 13.8 147 4-164 2-150 (154)
13 PRK15412 thiol:disulfide inter 99.9 3.2E-27 6.9E-32 167.1 11.8 136 6-168 39-177 (185)
14 cd02969 PRX_like1 Peroxiredoxi 99.9 1.9E-26 4E-31 161.4 13.5 144 9-169 1-154 (171)
15 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 8.3E-27 1.8E-31 154.7 10.1 123 8-149 1-124 (124)
16 cd03017 PRX_BCP Peroxiredoxin 99.9 1.7E-26 3.8E-31 156.4 11.4 138 10-163 1-139 (140)
17 PRK03147 thiol-disulfide oxido 99.9 5.9E-26 1.3E-30 159.0 13.9 139 4-166 33-171 (173)
18 TIGR00385 dsbE periplasmic pro 99.9 7.8E-26 1.7E-30 158.5 12.4 136 6-168 34-172 (173)
19 PRK00522 tpx lipid hydroperoxi 99.9 2.3E-25 5E-30 155.1 14.1 144 4-165 16-164 (167)
20 cd03018 PRX_AhpE_like Peroxire 99.9 1.7E-25 3.8E-30 153.0 11.8 130 6-154 1-134 (149)
21 cd03015 PRX_Typ2cys Peroxiredo 99.9 4.9E-25 1.1E-29 154.5 13.9 141 8-166 1-156 (173)
22 TIGR03137 AhpC peroxiredoxin. 99.9 2.2E-25 4.8E-30 157.9 11.5 129 7-153 3-138 (187)
23 cd03010 TlpA_like_DsbE TlpA-li 99.9 7.1E-25 1.5E-29 146.2 10.9 123 10-158 1-125 (127)
24 cd03012 TlpA_like_DipZ_like Tl 99.9 6.6E-25 1.4E-29 146.3 10.4 113 22-153 13-125 (126)
25 cd03014 PRX_Atyp2cys Peroxired 99.9 1.7E-24 3.8E-29 147.2 12.7 135 8-163 2-141 (143)
26 PRK13190 putative peroxiredoxi 99.9 2.9E-24 6.3E-29 153.7 13.2 143 6-167 2-154 (202)
27 cd02968 SCO SCO (an acronym fo 99.9 1.8E-24 3.9E-29 146.8 10.3 135 11-152 1-142 (142)
28 PRK13599 putative peroxiredoxi 99.9 7.8E-24 1.7E-28 152.5 12.5 146 7-166 3-155 (215)
29 PRK14018 trifunctional thiored 99.9 8.5E-24 1.8E-28 167.9 13.5 138 6-164 32-170 (521)
30 TIGR02661 MauD methylamine deh 99.9 1.9E-23 4.2E-28 148.2 14.0 132 5-166 45-178 (189)
31 PRK10382 alkyl hydroperoxide r 99.9 1.2E-23 2.7E-28 148.3 11.9 142 6-165 2-154 (187)
32 cd02971 PRX_family Peroxiredox 99.9 2.4E-23 5.1E-28 140.9 11.8 129 11-155 1-131 (140)
33 cd02967 mauD Methylamine utili 99.9 2.2E-23 4.7E-28 136.5 11.2 109 13-149 1-111 (114)
34 PLN02919 haloacid dehalogenase 99.9 1.8E-23 4E-28 179.2 13.5 144 6-168 391-537 (1057)
35 PRK13191 putative peroxiredoxi 99.9 1.3E-23 2.9E-28 151.4 10.6 145 4-165 5-159 (215)
36 cd03016 PRX_1cys Peroxiredoxin 99.9 1E-23 2.2E-28 151.1 9.7 141 8-166 1-153 (203)
37 PRK15000 peroxidase; Provision 99.9 5.8E-23 1.3E-27 146.7 12.5 132 6-155 2-146 (200)
38 PRK13189 peroxiredoxin; Provis 99.9 6.9E-23 1.5E-27 148.4 12.3 145 4-166 7-162 (222)
39 PTZ00137 2-Cys peroxiredoxin; 99.9 1.1E-22 2.5E-27 149.4 13.4 142 5-165 67-223 (261)
40 PTZ00253 tryparedoxin peroxida 99.9 1.1E-22 2.4E-27 145.5 11.6 148 1-166 1-160 (199)
41 cd02970 PRX_like2 Peroxiredoxi 99.9 8.1E-23 1.7E-27 139.6 10.3 130 11-152 1-148 (149)
42 cd03008 TryX_like_RdCVF Trypar 99.9 5.3E-23 1.1E-27 139.1 8.8 106 23-149 16-128 (146)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2.6E-22 5.6E-27 133.0 11.1 121 13-162 1-121 (123)
44 TIGR01626 ytfJ_HI0045 conserve 99.9 2.5E-22 5.5E-27 140.3 10.5 132 6-161 23-174 (184)
45 cd02966 TlpA_like_family TlpA- 99.9 1.7E-21 3.7E-26 126.7 11.7 116 14-152 1-116 (116)
46 PRK13728 conjugal transfer pro 99.9 2.1E-21 4.6E-26 134.9 9.6 121 8-168 51-172 (181)
47 cd02964 TryX_like_family Trypa 99.9 2.7E-21 6E-26 129.8 9.1 110 20-150 4-116 (132)
48 cd03009 TryX_like_TryX_NRX Try 99.8 2.7E-21 5.8E-26 129.6 6.7 111 17-149 3-115 (131)
49 COG0450 AhpC Peroxiredoxin [Po 99.8 8.7E-20 1.9E-24 126.3 10.3 142 6-165 3-159 (194)
50 cd03013 PRX5_like Peroxiredoxi 99.8 4.6E-20 9.9E-25 126.9 8.8 132 8-154 1-141 (155)
51 PF02630 SCO1-SenC: SCO1/SenC; 99.8 3.4E-20 7.4E-25 129.8 7.9 137 8-152 28-173 (174)
52 COG1999 Uncharacterized protei 99.8 4.5E-19 9.7E-24 127.1 12.2 149 14-169 49-206 (207)
53 PF13905 Thioredoxin_8: Thiore 99.8 1.3E-19 2.8E-24 114.8 7.0 94 32-146 1-95 (95)
54 cd02950 TxlA TRX-like protein 99.8 1.6E-18 3.5E-23 117.5 8.6 109 16-169 2-112 (142)
55 TIGR02738 TrbB type-F conjugat 99.8 4.6E-18 1E-22 116.2 9.0 109 22-167 44-153 (153)
56 PF00255 GSHPx: Glutathione pe 99.7 3E-17 6.6E-22 105.2 10.9 107 13-120 2-108 (108)
57 KOG2792 Putative cytochrome C 99.7 1.8E-17 3.9E-22 118.8 8.5 144 14-168 121-276 (280)
58 cd02985 TRX_CDSP32 TRX family, 99.7 6.8E-16 1.5E-20 99.2 10.2 88 30-164 13-100 (103)
59 KOG0855 Alkyl hydroperoxide re 99.6 3.8E-15 8.2E-20 100.3 10.4 143 5-165 62-207 (211)
60 cd02963 TRX_DnaJ TRX domain, D 99.6 1.6E-14 3.4E-19 94.1 9.6 91 29-166 21-111 (111)
61 KOG2501 Thioredoxin, nucleored 99.6 1.2E-14 2.7E-19 97.9 8.9 114 15-149 15-131 (157)
62 KOG0854 Alkyl hydroperoxide re 99.6 2.1E-14 4.6E-19 97.5 9.0 142 1-150 1-147 (224)
63 TIGR02740 TraF-like TraF-like 99.6 1.1E-14 2.4E-19 108.4 7.6 108 23-168 157-265 (271)
64 KOG0910 Thioredoxin-like prote 99.6 4E-14 8.7E-19 94.6 9.2 90 31-168 60-149 (150)
65 cd02953 DsbDgamma DsbD gamma f 99.5 3.4E-14 7.3E-19 91.4 8.3 90 31-163 10-103 (104)
66 cd02951 SoxW SoxW family; SoxW 99.5 3.7E-14 8.1E-19 94.2 8.7 104 31-169 12-121 (125)
67 cd02999 PDI_a_ERp44_like PDIa 99.5 3.8E-14 8.2E-19 90.6 7.8 44 28-73 14-57 (100)
68 cd02948 TRX_NDPK TRX domain, T 99.5 6.5E-14 1.4E-18 89.8 8.9 87 31-166 16-102 (102)
69 PRK09381 trxA thioredoxin; Pro 99.5 1.1E-13 2.4E-18 89.7 9.6 90 31-168 20-109 (109)
70 cd02956 ybbN ybbN protein fami 99.5 8.7E-14 1.9E-18 88.1 8.8 85 31-163 11-95 (96)
71 PRK10996 thioredoxin 2; Provis 99.5 2.4E-13 5.2E-18 91.9 8.1 89 31-167 51-139 (139)
72 PLN00410 U5 snRNP protein, DIM 99.5 4.9E-13 1.1E-17 89.8 8.8 92 31-169 22-122 (142)
73 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 3E-13 6.5E-18 86.5 7.2 84 30-161 16-99 (101)
74 PHA02278 thioredoxin-like prot 99.4 6.5E-13 1.4E-17 85.1 8.4 43 31-74 13-55 (103)
75 cd02994 PDI_a_TMX PDIa family, 99.4 6.3E-13 1.4E-17 84.9 8.2 85 31-164 16-100 (101)
76 COG2077 Tpx Peroxiredoxin [Pos 99.4 1.3E-12 2.8E-17 86.9 9.5 128 4-150 16-147 (158)
77 KOG0907 Thioredoxin [Posttrans 99.4 1.4E-12 3E-17 83.8 9.2 86 30-165 19-104 (106)
78 cd02993 PDI_a_APS_reductase PD 99.4 1.1E-12 2.4E-17 85.1 7.9 44 31-74 20-63 (109)
79 cd02954 DIM1 Dim1 family; Dim1 99.4 8.4E-13 1.8E-17 85.5 7.2 43 31-74 13-55 (114)
80 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 2E-12 4.3E-17 83.0 8.9 85 31-162 18-103 (104)
81 KOG0852 Alkyl hydroperoxide re 99.4 2.2E-12 4.8E-17 87.7 8.9 134 6-154 4-144 (196)
82 cd03000 PDI_a_TMX3 PDIa family 99.4 2.5E-12 5.5E-17 82.6 8.4 88 31-166 14-103 (104)
83 TIGR01126 pdi_dom protein disu 99.4 2.5E-12 5.3E-17 82.0 8.1 89 31-166 12-101 (102)
84 cd03005 PDI_a_ERp46 PDIa famil 99.4 1.5E-12 3.3E-17 83.1 6.5 83 33-162 17-101 (102)
85 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.2E-12 6.9E-17 83.2 7.8 43 31-74 28-70 (113)
86 TIGR01068 thioredoxin thioredo 99.4 6.8E-12 1.5E-16 79.7 9.1 88 32-167 14-101 (101)
87 cd03002 PDI_a_MPD1_like PDI fa 99.4 3.6E-12 7.8E-17 82.4 7.8 88 31-163 17-108 (109)
88 cd02949 TRX_NTR TRX domain, no 99.4 6.6E-12 1.4E-16 79.7 8.6 85 31-163 12-96 (97)
89 PF13098 Thioredoxin_2: Thiore 99.4 1.2E-12 2.7E-17 85.1 5.1 106 31-163 4-112 (112)
90 TIGR01295 PedC_BrcD bacterioci 99.3 2.9E-11 6.2E-16 79.9 10.7 98 31-163 22-120 (122)
91 cd02959 ERp19 Endoplasmic reti 99.3 1.9E-12 4.2E-17 84.9 5.0 47 27-74 14-60 (117)
92 COG3118 Thioredoxin domain-con 99.3 1.1E-11 2.5E-16 91.3 8.3 90 31-168 42-131 (304)
93 cd02996 PDI_a_ERp44 PDIa famil 99.3 8.3E-12 1.8E-16 80.7 6.5 44 31-74 17-65 (108)
94 PF00085 Thioredoxin: Thioredo 99.3 2.6E-11 5.7E-16 77.3 8.5 87 31-165 16-102 (103)
95 cd02997 PDI_a_PDIR PDIa family 99.3 1.4E-11 3E-16 78.9 7.2 87 31-162 16-103 (104)
96 PTZ00443 Thioredoxin domain-co 99.3 2.7E-11 5.9E-16 87.7 9.4 89 32-168 52-140 (224)
97 cd02984 TRX_PICOT TRX domain, 99.3 5.3E-11 1.2E-15 75.3 8.5 42 32-74 14-55 (97)
98 PRK00293 dipZ thiol:disulfide 99.3 4E-11 8.7E-16 98.0 9.8 94 30-167 472-570 (571)
99 cd02998 PDI_a_ERp38 PDIa famil 99.2 4.1E-11 8.8E-16 76.7 7.0 87 31-162 17-104 (105)
100 PTZ00051 thioredoxin; Provisio 99.2 9.2E-11 2E-15 74.3 8.6 42 31-74 17-58 (98)
101 cd02986 DLP Dim1 family, Dim1- 99.2 2.2E-10 4.7E-15 73.9 9.7 43 31-74 13-55 (114)
102 cd03001 PDI_a_P5 PDIa family, 99.2 1.9E-10 4.1E-15 73.4 9.1 85 32-163 18-102 (103)
103 cd02975 PfPDO_like_N Pyrococcu 99.2 3.9E-10 8.5E-15 73.5 10.7 90 31-170 21-113 (113)
104 cd02962 TMX2 TMX2 family; comp 99.2 8.9E-11 1.9E-15 80.2 7.9 44 31-74 46-89 (152)
105 cd02961 PDI_a_family Protein D 99.2 1.1E-10 2.3E-15 73.8 7.7 86 31-162 14-100 (101)
106 cd03065 PDI_b_Calsequestrin_N 99.2 4.2E-10 9E-15 73.9 10.1 88 32-167 27-119 (120)
107 PF00837 T4_deiodinase: Iodoth 99.2 1.6E-10 3.5E-15 83.1 8.4 143 4-165 71-235 (237)
108 cd02955 SSP411 TRX domain, SSP 99.2 6.3E-10 1.4E-14 73.5 10.3 45 29-74 12-59 (124)
109 cd02957 Phd_like Phosducin (Ph 99.1 4.9E-10 1.1E-14 73.1 8.2 41 32-74 24-64 (113)
110 TIGR00424 APS_reduc 5'-adenyly 99.1 4.3E-10 9.3E-15 89.2 9.2 44 31-74 370-413 (463)
111 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 2.7E-10 5.9E-15 72.8 6.6 44 31-74 17-61 (104)
112 KOG0908 Thioredoxin-like prote 99.1 6.3E-10 1.4E-14 80.1 8.4 93 27-169 16-108 (288)
113 PTZ00102 disulphide isomerase; 99.1 3.1E-10 6.8E-15 91.1 7.7 106 17-168 359-466 (477)
114 cd02989 Phd_like_TxnDC9 Phosdu 99.1 1.6E-09 3.5E-14 70.6 8.9 42 31-74 21-62 (113)
115 TIGR00411 redox_disulf_1 small 99.1 4.2E-09 9.1E-14 64.4 10.0 39 35-74 2-40 (82)
116 cd02992 PDI_a_QSOX PDIa family 99.1 1.2E-09 2.7E-14 71.3 8.0 43 32-74 19-63 (114)
117 cd02958 UAS UAS family; UAS is 99.1 4.1E-09 8.9E-14 68.8 10.4 96 29-169 14-113 (114)
118 cd02947 TRX_family TRX family; 99.0 2.1E-09 4.6E-14 66.5 8.6 41 32-74 10-50 (93)
119 cd02952 TRP14_like Human TRX-r 99.0 8.2E-10 1.8E-14 72.3 6.8 43 31-74 20-69 (119)
120 cd02965 HyaE HyaE family; HyaE 99.0 3.2E-09 7E-14 68.4 8.9 82 31-160 26-109 (111)
121 cd02987 Phd_like_Phd Phosducin 99.0 3.5E-09 7.6E-14 74.2 9.6 41 32-74 83-123 (175)
122 PLN02309 5'-adenylylsulfate re 99.0 2.2E-09 4.8E-14 85.1 9.5 44 31-74 364-407 (457)
123 cd02988 Phd_like_VIAF Phosduci 99.0 4.7E-09 1E-13 74.6 9.3 41 32-74 102-142 (192)
124 TIGR01130 ER_PDI_fam protein d 99.0 2.1E-09 4.5E-14 85.8 7.7 91 31-168 17-110 (462)
125 PTZ00102 disulphide isomerase; 98.9 3.9E-09 8.5E-14 84.8 7.9 90 31-168 48-139 (477)
126 PTZ00062 glutaredoxin; Provisi 98.8 2.9E-08 6.3E-13 70.9 9.0 77 33-167 18-94 (204)
127 cd02982 PDI_b'_family Protein 98.8 7.6E-08 1.7E-12 61.3 8.6 43 31-74 11-53 (103)
128 PF13728 TraF: F plasmid trans 98.8 3E-08 6.6E-13 71.6 7.3 99 27-163 115-214 (215)
129 TIGR00412 redox_disulf_2 small 98.8 9.2E-08 2E-12 57.8 8.2 36 36-72 2-37 (76)
130 TIGR02739 TraF type-F conjugat 98.8 4.1E-08 8.9E-13 72.3 7.9 104 27-168 145-249 (256)
131 PRK13703 conjugal pilus assemb 98.7 5.6E-08 1.2E-12 71.3 7.8 104 27-168 138-242 (248)
132 cd02960 AGR Anterior Gradient 98.7 1.4E-07 3E-12 62.6 8.9 25 30-54 21-45 (130)
133 TIGR02187 GlrX_arch Glutaredox 98.7 1.4E-07 3E-12 68.3 9.1 92 29-167 16-111 (215)
134 KOG0190 Protein disulfide isom 98.6 9.4E-08 2E-12 76.0 7.1 90 31-167 41-132 (493)
135 TIGR01130 ER_PDI_fam protein d 98.6 2.4E-07 5.2E-12 74.0 9.5 90 31-168 363-455 (462)
136 TIGR02187 GlrX_arch Glutaredox 98.6 6.5E-07 1.4E-11 64.8 9.4 43 30-74 131-173 (215)
137 smart00594 UAS UAS domain. 98.5 1.2E-06 2.6E-11 57.8 8.3 89 30-163 25-121 (122)
138 COG0526 TrxA Thiol-disulfide i 98.5 4.3E-07 9.3E-12 58.2 5.6 49 25-74 25-73 (127)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 2.5E-06 5.3E-11 53.1 8.7 46 27-74 7-52 (89)
140 PF13899 Thioredoxin_7: Thiore 98.4 1.6E-06 3.5E-11 53.1 6.2 43 31-74 16-61 (82)
141 PHA02125 thioredoxin-like prot 98.4 3.3E-06 7.2E-11 50.8 7.5 32 36-74 2-33 (75)
142 PF04592 SelP_N: Selenoprotein 98.3 5.8E-06 1.3E-10 59.5 9.1 116 10-150 8-126 (238)
143 PF14595 Thioredoxin_9: Thiore 98.3 3.1E-07 6.7E-12 61.2 2.5 90 28-164 37-126 (129)
144 COG4232 Thiol:disulfide interc 98.3 1.5E-06 3.3E-11 70.0 6.6 94 31-166 473-567 (569)
145 KOG0191 Thioredoxin/protein di 98.1 3E-05 6.4E-10 61.0 9.6 42 31-73 46-87 (383)
146 cd02973 TRX_GRX_like Thioredox 98.1 1.3E-05 2.8E-10 46.9 5.8 38 35-74 2-39 (67)
147 PF05988 DUF899: Bacterial pro 98.1 8.5E-05 1.9E-09 52.9 10.9 119 14-152 48-174 (211)
148 KOG0912 Thiol-disulfide isomer 98.1 8.9E-06 1.9E-10 60.7 5.9 89 32-168 13-107 (375)
149 TIGR02196 GlrX_YruB Glutaredox 98.0 8.7E-05 1.9E-09 43.7 8.1 32 36-74 2-33 (74)
150 cd01659 TRX_superfamily Thiore 98.0 3.8E-05 8.3E-10 43.3 6.3 38 36-75 1-38 (69)
151 PF09695 YtfJ_HI0045: Bacteria 97.9 0.0013 2.7E-08 44.9 13.5 142 7-165 2-156 (160)
152 COG0678 AHP1 Peroxiredoxin [Po 97.9 6.9E-05 1.5E-09 50.3 6.8 132 6-152 3-147 (165)
153 cd02991 UAS_ETEA UAS family, E 97.9 0.00025 5.4E-09 46.3 8.9 92 29-169 14-115 (116)
154 TIGR02200 GlrX_actino Glutared 97.9 0.00016 3.5E-09 43.2 7.5 32 36-74 2-33 (77)
155 KOG0190 Protein disulfide isom 97.9 1.8E-05 3.9E-10 63.2 4.1 43 31-73 383-426 (493)
156 cd03007 PDI_a_ERp29_N PDIa fam 97.8 8.1E-05 1.8E-09 48.5 6.3 43 31-75 17-61 (116)
157 PF03190 Thioredox_DsbH: Prote 97.7 0.00054 1.2E-08 47.2 9.2 81 31-150 36-119 (163)
158 PF05176 ATP-synt_10: ATP10 pr 97.6 0.00083 1.8E-08 49.8 9.4 136 9-163 98-246 (252)
159 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00018 4E-09 43.7 5.1 47 36-92 1-47 (84)
160 COG2143 Thioredoxin-related pr 97.6 0.0022 4.7E-08 43.6 9.9 103 30-165 40-147 (182)
161 KOG1731 FAD-dependent sulfhydr 97.5 3.5E-05 7.6E-10 62.0 1.1 61 33-103 58-121 (606)
162 PRK11509 hydrogenase-1 operon 97.2 0.0081 1.7E-07 40.1 9.7 98 25-169 25-126 (132)
163 PF13778 DUF4174: Domain of un 97.2 0.0068 1.5E-07 39.7 9.2 107 26-166 2-111 (118)
164 KOG4277 Uncharacterized conser 97.2 0.00099 2.1E-08 50.0 5.3 35 32-66 43-77 (468)
165 KOG0541 Alkyl hydroperoxide re 97.2 0.0065 1.4E-07 41.3 8.6 136 4-152 7-153 (171)
166 PRK11200 grxA glutaredoxin 1; 97.1 0.0021 4.7E-08 39.3 5.4 38 35-74 2-39 (85)
167 KOG0191 Thioredoxin/protein di 97.1 0.0037 8E-08 49.2 8.0 42 32-73 162-204 (383)
168 PF06110 DUF953: Eukaryotic pr 97.0 0.001 2.3E-08 43.5 4.0 43 31-74 18-67 (119)
169 PF13192 Thioredoxin_3: Thiore 97.0 0.006 1.3E-07 36.6 7.1 23 40-62 6-28 (76)
170 COG4312 Uncharacterized protei 97.0 0.003 6.5E-08 45.2 6.4 81 17-107 57-145 (247)
171 PRK11657 dsbG disulfide isomer 97.0 0.0084 1.8E-07 44.5 9.2 30 31-60 116-145 (251)
172 PRK10877 protein disulfide iso 97.0 0.007 1.5E-07 44.4 8.3 40 31-74 106-145 (232)
173 PF13911 AhpC-TSA_2: AhpC/TSA 96.9 0.015 3.3E-07 37.6 8.6 88 54-152 2-113 (115)
174 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.008 1.7E-07 35.0 5.7 32 36-74 2-33 (73)
175 cd03023 DsbA_Com1_like DsbA fa 96.7 0.0035 7.5E-08 42.3 4.5 41 31-73 4-44 (154)
176 KOG3425 Uncharacterized conser 96.5 0.007 1.5E-07 39.2 4.8 47 27-74 19-74 (128)
177 cd03418 GRX_GRXb_1_3_like Glut 96.4 0.019 4.1E-07 33.9 5.9 32 36-74 2-33 (75)
178 PF00462 Glutaredoxin: Glutare 96.4 0.01 2.2E-07 33.6 4.6 32 36-74 1-32 (60)
179 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.011 2.3E-07 35.7 4.8 34 36-74 2-35 (82)
180 TIGR02190 GlrX-dom Glutaredoxi 96.3 0.02 4.3E-07 34.5 5.7 38 30-74 4-41 (79)
181 COG1331 Highly conserved prote 96.3 0.039 8.4E-07 46.1 9.0 22 31-52 42-63 (667)
182 TIGR02181 GRX_bact Glutaredoxi 96.1 0.018 3.9E-07 34.5 5.0 32 36-74 1-32 (79)
183 TIGR02183 GRXA Glutaredoxin, G 96.1 0.021 4.5E-07 35.1 5.3 37 36-74 2-38 (86)
184 KOG3414 Component of the U4/U6 96.1 0.18 3.9E-06 33.2 9.4 57 31-100 22-78 (142)
185 PF13462 Thioredoxin_4: Thiore 96.0 0.014 3.1E-07 39.8 4.6 50 25-74 5-55 (162)
186 PF02114 Phosducin: Phosducin; 95.9 0.071 1.5E-06 40.0 8.2 42 31-74 145-186 (265)
187 cd02066 GRX_family Glutaredoxi 95.9 0.033 7.1E-07 32.1 5.2 32 36-74 2-33 (72)
188 TIGR03143 AhpF_homolog putativ 95.7 0.11 2.5E-06 43.0 9.3 40 32-73 476-515 (555)
189 cd03027 GRX_DEP Glutaredoxin ( 95.6 0.084 1.8E-06 31.1 6.1 32 36-74 3-34 (73)
190 cd03019 DsbA_DsbA DsbA family, 95.3 0.038 8.3E-07 38.3 4.7 42 31-73 14-55 (178)
191 COG0695 GrxC Glutaredoxin and 95.3 0.085 1.9E-06 31.9 5.6 44 36-92 3-46 (80)
192 PHA03050 glutaredoxin; Provisi 95.2 0.049 1.1E-06 35.1 4.5 24 35-58 14-37 (108)
193 PRK10329 glutaredoxin-like pro 95.2 0.091 2E-06 31.9 5.5 32 36-74 3-34 (81)
194 cd02983 P5_C P5 family, C-term 95.1 0.21 4.5E-06 33.3 7.5 92 33-169 21-117 (130)
195 TIGR00365 monothiol glutaredox 94.9 0.18 3.8E-06 31.7 6.4 37 31-74 10-50 (97)
196 PRK15317 alkyl hydroperoxide r 94.6 0.35 7.5E-06 39.8 9.2 41 31-73 115-155 (517)
197 TIGR02189 GlrX-like_plant Glut 94.6 0.1 2.2E-06 33.0 4.8 32 36-74 10-41 (99)
198 cd03029 GRX_hybridPRX5 Glutare 94.6 0.12 2.6E-06 30.3 4.9 32 36-74 3-34 (72)
199 TIGR02194 GlrX_NrdH Glutaredox 94.4 0.13 2.8E-06 30.2 4.7 31 37-74 2-32 (72)
200 KOG0911 Glutaredoxin-related p 94.3 0.028 6E-07 40.6 1.8 43 31-75 16-58 (227)
201 PRK10638 glutaredoxin 3; Provi 94.3 0.23 5.1E-06 30.0 5.7 32 36-74 4-35 (83)
202 cd03020 DsbA_DsbC_DsbG DsbA fa 94.2 0.26 5.7E-06 35.0 6.8 26 31-56 76-101 (197)
203 cd03028 GRX_PICOT_like Glutare 94.1 0.28 6E-06 30.3 5.9 37 31-74 6-46 (90)
204 KOG0914 Thioredoxin-like prote 93.9 0.05 1.1E-06 39.2 2.5 45 31-75 143-187 (265)
205 KOG4498 Uncharacterized conser 93.6 0.12 2.6E-06 36.4 3.8 55 18-72 35-91 (197)
206 PRK10954 periplasmic protein d 93.4 0.12 2.5E-06 37.2 3.7 44 30-74 35-81 (207)
207 TIGR03140 AhpF alkyl hydropero 93.4 0.93 2E-05 37.3 9.3 40 31-72 116-155 (515)
208 PRK10824 glutaredoxin-4; Provi 92.9 0.41 9E-06 31.2 5.4 27 31-57 13-43 (115)
209 cd02972 DsbA_family DsbA famil 92.9 0.16 3.5E-06 30.9 3.4 38 36-74 1-38 (98)
210 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 1.6 3.5E-05 35.2 8.6 64 10-74 274-337 (453)
211 PF11009 DUF2847: Protein of u 91.6 0.91 2E-05 29.0 5.6 59 31-98 18-76 (105)
212 TIGR01617 arsC_related transcr 91.2 0.49 1.1E-05 30.7 4.3 50 38-99 3-52 (117)
213 KOG2507 Ubiquitin regulatory p 91.0 2.2 4.8E-05 34.0 8.2 37 131-167 75-111 (506)
214 COG4545 Glutaredoxin-related p 90.8 0.34 7.5E-06 28.8 2.9 42 37-92 5-46 (85)
215 COG3054 Predicted transcriptio 90.6 1.9 4.2E-05 29.4 6.6 142 6-164 23-177 (184)
216 COG1651 DsbG Protein-disulfide 90.5 0.9 1.9E-05 33.3 5.7 55 19-73 71-125 (244)
217 KOG1752 Glutaredoxin and relat 89.7 1.1 2.5E-05 28.5 4.8 45 36-92 16-60 (104)
218 cd03036 ArsC_like Arsenate Red 89.5 0.84 1.8E-05 29.4 4.2 48 38-97 3-50 (111)
219 cd02977 ArsC_family Arsenate R 89.2 1 2.2E-05 28.5 4.4 48 37-96 2-49 (105)
220 PF13848 Thioredoxin_6: Thiore 89.1 3.8 8.2E-05 28.2 7.7 39 35-74 98-136 (184)
221 TIGR03143 AhpF_homolog putativ 88.9 4.3 9.4E-05 33.8 9.0 42 28-71 362-403 (555)
222 KOG0913 Thiol-disulfide isomer 88.7 0.12 2.5E-06 37.7 -0.3 40 33-72 40-79 (248)
223 PRK01655 spxA transcriptional 88.4 0.82 1.8E-05 30.4 3.7 50 37-98 3-52 (131)
224 cd03032 ArsC_Spx Arsenate Redu 88.4 1.6 3.4E-05 28.3 5.0 49 38-98 4-52 (115)
225 PF02966 DIM1: Mitosis protein 87.8 2.5 5.4E-05 28.1 5.5 43 31-74 19-61 (133)
226 PF06053 DUF929: Domain of unk 87.7 1.3 2.8E-05 32.9 4.6 33 31-63 57-89 (249)
227 cd03035 ArsC_Yffb Arsenate Red 87.4 1.4 3E-05 28.1 4.2 48 37-96 2-49 (105)
228 PTZ00062 glutaredoxin; Provisi 87.2 2.5 5.4E-05 30.5 5.8 37 31-74 111-151 (204)
229 cd03072 PDI_b'_ERp44 PDIb' fam 86.0 6.2 0.00013 25.3 6.7 77 48-169 30-110 (111)
230 KOG4614 Inner membrane protein 84.9 1.9 4.2E-05 31.6 4.2 29 136-164 250-278 (287)
231 PRK13344 spxA transcriptional 84.2 2.6 5.7E-05 28.0 4.5 50 38-99 4-53 (132)
232 PRK12559 transcriptional regul 83.6 3.1 6.7E-05 27.7 4.6 46 36-92 2-47 (131)
233 PHA03075 glutaredoxin-like pro 83.2 1 2.3E-05 29.2 2.1 30 33-62 2-31 (123)
234 PF07976 Phe_hydrox_dim: Pheno 81.8 9 0.00019 26.6 6.6 71 4-74 28-116 (169)
235 PF04278 Tic22: Tic22-like fam 81.1 22 0.00047 27.0 11.3 60 9-74 72-136 (274)
236 PF05768 DUF836: Glutaredoxin- 80.3 2.5 5.5E-05 25.4 3.0 52 36-102 2-53 (81)
237 PRK12759 bifunctional gluaredo 78.8 4.9 0.00011 32.2 5.0 32 36-74 4-35 (410)
238 KOG3170 Conserved phosducin-li 78.5 3.4 7.4E-05 29.7 3.5 40 31-72 110-149 (240)
239 PF01323 DSBA: DSBA-like thior 74.9 3.7 7.9E-05 28.6 3.0 39 35-73 1-39 (193)
240 cd03073 PDI_b'_ERp72_ERp57 PDI 73.7 21 0.00045 22.9 8.2 26 48-74 34-60 (111)
241 PRK10026 arsenate reductase; P 72.8 26 0.00057 23.7 8.8 103 36-163 4-116 (141)
242 cd03025 DsbA_FrnE_like DsbA fa 71.2 6.2 0.00013 27.5 3.5 27 36-62 3-29 (193)
243 PF06764 DUF1223: Protein of u 70.1 16 0.00034 26.4 5.3 38 36-76 1-39 (202)
244 TIGR03759 conj_TIGR03759 integ 69.7 18 0.0004 25.9 5.4 58 32-102 108-165 (200)
245 COG1393 ArsC Arsenate reductas 67.0 13 0.00029 24.2 4.0 52 36-99 3-54 (117)
246 TIGR00995 3a0901s06TIC22 chlor 65.3 58 0.0013 24.7 10.6 77 7-102 77-157 (270)
247 COG2179 Predicted hydrolase of 65.2 19 0.00041 25.2 4.6 60 31-99 26-87 (175)
248 PF11211 DUF2997: Protein of u 64.8 20 0.00044 19.3 3.8 30 138-167 3-34 (48)
249 PF07411 DUF1508: Domain of un 62.7 17 0.00037 19.6 3.4 31 136-166 7-37 (49)
250 cd03033 ArsC_15kD Arsenate Red 62.4 20 0.00044 23.1 4.2 48 37-96 3-50 (113)
251 KOG1672 ATP binding protein [P 61.3 59 0.0013 23.4 6.6 41 31-73 83-123 (211)
252 PF06491 Disulph_isomer: Disul 59.3 15 0.00032 24.5 3.2 33 134-167 96-132 (136)
253 PF06953 ArsD: Arsenical resis 56.3 56 0.0012 21.6 6.3 26 49-74 24-49 (123)
254 COG1535 EntB Isochorismate hyd 55.6 19 0.00041 25.6 3.3 54 36-91 42-95 (218)
255 cd02979 PHOX_C FAD-dependent P 55.4 67 0.0015 22.2 11.6 47 9-55 1-52 (167)
256 TIGR00014 arsC arsenate reduct 55.4 34 0.00074 22.0 4.4 48 38-97 3-50 (114)
257 cd03031 GRX_GRX_like Glutaredo 52.6 57 0.0012 22.2 5.3 25 43-74 15-39 (147)
258 PF02563 Poly_export: Polysacc 52.4 25 0.00055 21.0 3.3 32 137-168 32-68 (82)
259 PF08496 Peptidase_S49_N: Pept 51.8 11 0.00023 26.0 1.7 30 134-168 97-126 (155)
260 cd03060 GST_N_Omega_like GST_N 50.8 15 0.00033 20.9 2.1 31 38-73 3-33 (71)
261 PRK08294 phenol 2-monooxygenas 50.5 1.6E+02 0.0035 25.2 11.5 146 5-169 462-633 (634)
262 cd03034 ArsC_ArsC Arsenate Red 48.2 51 0.0011 21.0 4.4 48 38-97 3-50 (112)
263 PRK10853 putative reductase; P 46.9 51 0.0011 21.4 4.3 47 38-96 4-50 (118)
264 cd03063 TRX_Fd_FDH_beta TRX-li 46.3 50 0.0011 20.5 3.9 30 136-168 50-79 (92)
265 PF04134 DUF393: Protein of un 45.4 14 0.0003 23.5 1.4 31 39-72 2-32 (114)
266 PF04723 GRDA: Glycine reducta 45.0 25 0.00053 23.7 2.5 40 35-74 31-77 (150)
267 PF05673 DUF815: Protein of un 43.6 1.3E+02 0.0027 22.6 6.2 73 41-124 60-132 (249)
268 PF03544 TonB_C: Gram-negative 43.1 14 0.00031 21.5 1.1 33 136-168 20-53 (79)
269 TIGR01352 tonB_Cterm TonB fami 43.0 38 0.00083 19.3 3.0 32 136-167 14-46 (74)
270 PF13743 Thioredoxin_5: Thiore 42.9 25 0.00054 24.5 2.5 34 38-71 2-36 (176)
271 COG4098 comFA Superfamily II D 42.4 1.7E+02 0.0036 23.4 6.9 58 31-102 304-374 (441)
272 PF13103 TonB_2: TonB C termin 41.8 48 0.001 19.6 3.4 32 136-167 30-62 (85)
273 PRK13265 glycine/sarcosine/bet 41.0 32 0.0007 23.1 2.6 38 36-73 33-77 (154)
274 PF08821 CGGC: CGGC domain; I 39.9 1E+02 0.0022 19.8 7.4 72 25-102 28-103 (107)
275 PF08806 Sep15_SelM: Sep15/Sel 39.6 47 0.001 19.9 3.0 32 135-166 43-75 (78)
276 PF02743 Cache_1: Cache domain 39.4 33 0.00072 20.1 2.4 14 136-149 55-68 (81)
277 PF14307 Glyco_tran_WbsX: Glyc 39.0 80 0.0017 24.7 5.0 43 31-73 157-199 (345)
278 cd03527 RuBisCO_small Ribulose 37.9 82 0.0018 19.9 4.0 35 39-73 45-85 (99)
279 PRK12359 flavodoxin FldB; Prov 37.8 1.2E+02 0.0026 21.2 5.2 12 155-166 153-164 (172)
280 cd03051 GST_N_GTT2_like GST_N 37.3 34 0.00074 19.2 2.2 19 39-57 4-22 (74)
281 PF10589 NADH_4Fe-4S: NADH-ubi 37.3 4.2 9.2E-05 21.7 -1.7 20 43-62 18-37 (46)
282 TIGR01616 nitro_assoc nitrogen 36.8 1E+02 0.0022 20.3 4.5 46 36-92 3-48 (126)
283 PF03960 ArsC: ArsC family; I 36.7 80 0.0017 19.9 4.0 51 40-102 2-52 (110)
284 cd03041 GST_N_2GST_N GST_N fam 36.1 28 0.00061 20.3 1.6 17 39-55 5-21 (77)
285 PRK11867 2-oxoglutarate ferred 35.8 37 0.0008 25.9 2.6 22 39-61 15-36 (286)
286 cd00307 RuBisCO_small_like Rib 35.8 69 0.0015 19.6 3.3 30 44-73 36-70 (84)
287 cd03040 GST_N_mPGES2 GST_N fam 35.3 30 0.00066 19.9 1.7 18 38-55 4-21 (77)
288 KOG2603 Oligosaccharyltransfer 35.0 92 0.002 24.2 4.5 48 17-64 45-96 (331)
289 COG3019 Predicted metal-bindin 34.8 1.5E+02 0.0032 20.2 8.3 34 34-74 26-59 (149)
290 COG2607 Predicted ATPase (AAA+ 34.1 1.6E+02 0.0035 22.3 5.5 65 53-124 101-165 (287)
291 cd00570 GST_N_family Glutathio 33.7 38 0.00083 18.3 1.9 19 39-57 4-22 (71)
292 PF02484 Rhabdo_NV: Rhabdoviru 33.4 1.1E+02 0.0023 19.0 3.8 31 136-167 26-56 (111)
293 PF11760 CbiG_N: Cobalamin syn 33.0 1.2E+02 0.0026 18.6 4.2 33 136-168 40-74 (84)
294 cd03037 GST_N_GRX2 GST_N famil 32.1 37 0.00081 19.2 1.7 17 39-55 4-20 (71)
295 PF09466 Yqai: Hypothetical pr 30.7 71 0.0015 18.9 2.6 23 126-149 29-51 (71)
296 PF07801 DUF1647: Protein of u 30.2 1.3E+02 0.0028 20.4 4.2 61 13-73 38-99 (142)
297 PF07293 DUF1450: Protein of u 30.1 66 0.0014 19.4 2.5 28 136-169 47-74 (78)
298 PF03259 Robl_LC7: Roadblock/L 29.9 39 0.00086 20.1 1.6 14 136-149 17-30 (91)
299 COG1129 MglA ABC-type sugar tr 29.8 2.5E+02 0.0054 23.5 6.5 32 42-73 172-203 (500)
300 PF02575 YbaB_DNA_bd: YbaB/Ebf 29.3 1E+02 0.0022 18.7 3.4 33 136-168 32-69 (93)
301 COG3322 Predicted periplasmic 29.2 59 0.0013 25.0 2.7 14 136-149 106-119 (295)
302 cd03030 GRX_SH3BGR Glutaredoxi 28.5 1.5E+02 0.0032 18.3 6.2 37 38-74 3-39 (92)
303 KOG2961 Predicted hydrolase (H 28.5 2.1E+02 0.0045 20.0 8.7 103 11-120 21-131 (190)
304 PRK11866 2-oxoacid ferredoxin 28.1 90 0.0019 23.8 3.5 21 41-61 7-29 (279)
305 COG1335 PncA Amidases related 28.0 1.6E+02 0.0035 20.7 4.7 41 34-74 8-58 (205)
306 PRK07883 hypothetical protein; 27.8 1.1E+02 0.0024 25.8 4.3 22 129-150 212-234 (557)
307 COG3581 Uncharacterized protei 27.7 1.7E+02 0.0038 23.6 5.0 40 36-75 73-114 (420)
308 COG0796 MurI Glutamate racemas 27.7 2.8E+02 0.006 21.1 6.3 60 34-102 31-95 (269)
309 KOG2893 Zn finger protein [Gen 27.6 25 0.00054 26.0 0.5 15 41-55 10-24 (341)
310 PF02526 GBP_repeat: Glycophor 27.5 9.4 0.0002 18.8 -1.2 27 141-167 4-30 (38)
311 PRK14324 glmM phosphoglucosami 27.3 2.8E+02 0.0062 22.5 6.5 12 136-147 247-258 (446)
312 cd03024 DsbA_FrnE DsbA family, 26.9 2.2E+02 0.0048 19.7 6.6 24 39-62 4-27 (201)
313 PF06342 DUF1057: Alpha/beta h 26.5 2.2E+02 0.0047 22.0 5.2 57 19-80 13-77 (297)
314 smart00775 LNS2 LNS2 domain. T 26.3 2.1E+02 0.0046 19.4 5.7 12 136-147 144-155 (157)
315 COG2326 Uncharacterized conser 26.2 2.6E+02 0.0057 21.2 5.5 28 137-164 134-164 (270)
316 TIGR03027 pepcterm_export puta 26.2 1.2E+02 0.0027 20.7 3.7 33 136-168 21-58 (165)
317 PF08918 PhoQ_Sensor: PhoQ Sen 26.1 38 0.00083 23.6 1.1 25 136-163 76-100 (180)
318 cd03059 GST_N_SspA GST_N famil 25.6 59 0.0013 18.2 1.8 16 39-54 4-19 (73)
319 cd08344 MhqB_like_N N-terminal 25.6 1E+02 0.0022 19.0 3.1 19 136-154 93-111 (112)
320 PF01106 NifU: NifU-like domai 25.5 1.3E+02 0.0027 17.4 3.1 33 21-54 15-47 (68)
321 TIGR02652 conserved hypothetic 25.0 21 0.00045 24.1 -0.3 14 42-55 10-23 (163)
322 COG1489 SfsA DNA-binding prote 24.9 1.7E+02 0.0037 21.7 4.3 41 33-73 169-213 (235)
323 PF05209 MinC_N: Septum format 24.7 61 0.0013 20.2 1.8 36 30-71 43-78 (99)
324 PRK08244 hypothetical protein; 24.7 61 0.0013 26.5 2.3 35 7-41 392-428 (493)
325 PF09654 DUF2396: Protein of u 24.6 21 0.00046 24.0 -0.3 14 42-55 7-20 (161)
326 PRK13669 hypothetical protein; 24.5 91 0.002 18.8 2.4 28 136-169 47-74 (78)
327 COG2761 FrnE Predicted dithiol 24.1 3E+02 0.0065 20.3 6.3 32 33-64 4-36 (225)
328 smart00653 eIF2B_5 domain pres 24.0 2.1E+02 0.0045 18.4 4.2 29 138-168 50-78 (110)
329 PF14427 Pput2613-deam: Pput_2 23.9 1.3E+02 0.0028 19.5 3.1 48 11-61 41-92 (118)
330 PF05228 CHASE4: CHASE4 domain 23.7 1.1E+02 0.0025 20.3 3.2 14 136-149 52-65 (161)
331 PLN03132 NADH dehydrogenase (u 23.6 71 0.0015 26.2 2.4 21 43-63 379-399 (461)
332 PF00352 TBP: Transcription fa 23.5 1.1E+02 0.0025 18.4 2.8 30 136-167 50-79 (86)
333 PRK08132 FAD-dependent oxidore 22.7 4.5E+02 0.0098 21.8 10.2 35 6-41 427-462 (547)
334 PRK15126 thiamin pyrimidine py 22.5 3.2E+02 0.007 20.1 10.6 39 55-102 25-63 (272)
335 PF14903 WG_beta_rep: WG conta 22.3 62 0.0013 15.3 1.2 11 139-149 3-13 (35)
336 PF07700 HNOB: Heme NO binding 22.3 2.4E+02 0.0053 19.4 4.6 55 8-72 113-167 (171)
337 cd03022 DsbA_HCCA_Iso DsbA fam 22.1 77 0.0017 21.8 2.1 32 39-71 4-35 (192)
338 PF04908 SH3BGR: SH3-binding, 22.1 2.2E+02 0.0047 18.0 5.7 50 37-94 3-52 (99)
339 TIGR03831 YgiT_finger YgiT-typ 21.9 60 0.0013 16.5 1.2 21 30-50 20-41 (46)
340 TIGR01455 glmM phosphoglucosam 21.8 4.3E+02 0.0093 21.4 6.6 12 136-147 244-255 (443)
341 PTZ00304 NADH dehydrogenase [u 21.8 79 0.0017 26.0 2.3 21 43-63 369-389 (461)
342 cd02990 UAS_FAF1 UAS family, F 21.8 2E+02 0.0043 19.3 3.9 33 136-168 99-134 (136)
343 PF08735 DUF1786: Putative pyr 21.6 1.8E+02 0.0039 21.9 3.9 31 138-169 182-215 (254)
344 KOG4115 Dynein-associated prot 21.3 2.1E+02 0.0046 18.0 3.6 32 136-167 20-51 (97)
345 PF00989 PAS: PAS fold; Inter 21.3 87 0.0019 18.8 2.1 14 136-149 13-26 (113)
346 PF14062 DUF4253: Domain of un 21.1 1.7E+02 0.0037 18.7 3.4 51 44-97 26-79 (111)
347 PF06122 TraH: Conjugative rel 21.0 45 0.00098 26.3 0.8 24 41-64 94-117 (361)
348 PRK05778 2-oxoglutarate ferred 20.9 1.6E+02 0.0035 22.6 3.8 10 41-50 18-27 (301)
349 PRK09267 flavodoxin FldA; Vali 20.8 2.8E+02 0.0061 18.8 4.7 9 36-44 50-58 (169)
350 PRK10976 putative hydrolase; P 20.7 3.5E+02 0.0075 19.8 9.6 39 55-102 25-63 (266)
351 PF08448 PAS_4: PAS fold; Int 20.6 98 0.0021 18.4 2.2 14 136-149 7-20 (110)
352 PHA02762 hypothetical protein; 20.5 1.7E+02 0.0037 16.2 3.5 29 136-165 30-58 (62)
353 PRK10887 glmM phosphoglucosami 20.4 4.7E+02 0.01 21.2 6.8 13 136-148 243-255 (443)
354 PF12098 DUF3574: Protein of u 20.3 2.5E+02 0.0054 18.0 4.4 50 10-64 32-87 (104)
355 cd07566 ScNTA1_like Saccharomy 20.3 93 0.002 23.7 2.3 17 136-152 103-119 (295)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=4.7e-35 Score=212.11 Aligned_cols=164 Identities=64% Similarity=1.096 Sum_probs=143.0
Q ss_pred ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~ 85 (170)
...|..+|+|++.|.+|+.+++++++||++||+||++||++|..++|.|++++++++++|+++|+|++|++...++++.+
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999987767777889
Q ss_pred HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881 86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165 (170)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~ 165 (170)
++++|+.++++++||++.+.|.++......|.+.....++..|..++|+|++||||++|+|++++.|..+++++++.|++
T Consensus 153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 99999855889999998655666655566677665555544445678889999999999999999999999999999999
Q ss_pred HhcC
Q 030881 166 LLGL 169 (170)
Q Consensus 166 ~l~~ 169 (170)
+|+.
T Consensus 233 lL~~ 236 (236)
T PLN02399 233 LLAA 236 (236)
T ss_pred HhcC
Confidence 9863
No 2
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=8.1e-35 Score=207.56 Aligned_cols=164 Identities=41% Similarity=0.647 Sum_probs=142.8
Q ss_pred cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~ 84 (170)
....+..+|+|++.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++|++||+|+++++.+.+.++.
T Consensus 12 ~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 12 KDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999988777777889
Q ss_pred HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccC-----CccccCceeEEECCCCcEEEEeCCCCCchHH
Q 030881 85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-----DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL 159 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l 159 (170)
+++++|++ +++++||++.+.+.++.....++.+.....+..++ ..++++|++||||++|+|++++.|..+++++
T Consensus 92 e~~~~f~~-~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l 170 (199)
T PTZ00056 92 KDIRKFND-KNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL 170 (199)
T ss_pred HHHHHHHH-HcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence 99999997 88999999977667777666667666544443221 4578888999999999999999998888899
Q ss_pred HHHHHHHhcC
Q 030881 160 EHDIKKLLGL 169 (170)
Q Consensus 160 ~~~l~~~l~~ 169 (170)
++.|+++|++
T Consensus 171 ~~~I~~ll~~ 180 (199)
T PTZ00056 171 EKKIAELLGV 180 (199)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 3
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=2.9e-34 Score=199.85 Aligned_cols=163 Identities=66% Similarity=1.143 Sum_probs=140.7
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~ 87 (170)
.+..+|+|++.+.+|+.+++++++||++||+||++||++|..++|.|++++++|+++|+.+++|++|++...++++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999987766666777888
Q ss_pred HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
.++..++++++||++.+.|..+......|.+......+..+..++++|++||||++|+|++++.|..+.+++++.|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 77765588999999966677765666667766554444444567888899999999999999999999999999999998
Q ss_pred cCC
Q 030881 168 GLS 170 (170)
Q Consensus 168 ~~~ 170 (170)
+++
T Consensus 165 ~~~ 167 (167)
T PLN02412 165 GQA 167 (167)
T ss_pred hhC
Confidence 763
No 4
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=100.00 E-value=5.1e-33 Score=191.08 Aligned_cols=150 Identities=61% Similarity=1.053 Sum_probs=126.1
Q ss_pred cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881 12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (170)
Q Consensus 12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~ 91 (170)
+|+|++.|.+|+.+++++++||++||+||++||+ |..++|.|++++++++++|+.+++|+++.+...+.++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 7899999999999999999999999999999999 999999999999999999999999998866555556788999999
Q ss_pred HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+++++++||++.+.|..+......+.+.....|+..+..+.++|++||||++|+|++++.|..+.+++++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 74479999999554555554455566666677754445677788999999999999999998877766553
No 5
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=9.6e-33 Score=193.57 Aligned_cols=158 Identities=44% Similarity=0.784 Sum_probs=144.3
Q ss_pred cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD 89 (170)
Q Consensus 10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~ 89 (170)
..+++|++.+.+|+.++|++++||++||.|||+||++|. +++.|++++++|+++|+.+++|++++|..+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 368899999999999999999999999999999999995 7999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC--------------------ccCCccccCceeEEECCCCcEEEE
Q 030881 90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG--------------------IFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
|++.+++++||++.+.|.+|..+..+|.|++...|. ..+..|.||++.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 997578999999999999999999999999877762 112479999999999999999999
Q ss_pred eCCCCCchH--HHHHHHHHhc
Q 030881 150 YYPTTSLLS--LEHDIKKLLG 168 (170)
Q Consensus 150 ~~~~~~~~~--l~~~l~~~l~ 168 (170)
+.+...+.+ +++.|+++|.
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHhc
Confidence 999888887 9999998885
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=100.00 E-value=4e-32 Score=191.80 Aligned_cols=165 Identities=44% Similarity=0.801 Sum_probs=137.1
Q ss_pred cccCCcccccceeeCCCCCeecCCCCCCcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~ 83 (170)
....+..+|+|++.+.+|+.+++++++||++ |+.+|++||++|..++|.|++++++|+++|+.+++|++|++...++.+
T Consensus 13 ~~~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 13 IQPPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred ccCCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 3456789999999999999999999999965 556699999999999999999999999999999999988665555566
Q ss_pred hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCc-----cCCccccCceeEEECCCCcEEEEeCCCCCchH
Q 030881 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI-----FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS 158 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~ 158 (170)
.+++.+|++++++++||++.+.+.++.....++.++....+.. ....+|++.++||||++|+|++++.|..+.+.
T Consensus 93 ~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~ 172 (183)
T PTZ00256 93 EPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNE 172 (183)
T ss_pred HHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence 7889999866789999999776777776666676665544321 11367877789999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030881 159 LEHDIKKLLGL 169 (170)
Q Consensus 159 l~~~l~~~l~~ 169 (170)
+++.|+++|+.
T Consensus 173 l~~~I~~ll~~ 183 (183)
T PTZ00256 173 MIQDIEKLLNA 183 (183)
T ss_pred HHHHHHHHhcC
Confidence 99999998863
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.98 E-value=6.5e-31 Score=180.81 Aligned_cols=151 Identities=41% Similarity=0.774 Sum_probs=124.6
Q ss_pred cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881 12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (170)
Q Consensus 12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~ 91 (170)
+-+|++.+.+|+.+++++++||++||+||++||++|..++|.|++++++++++|+.+++|++++++..++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999998877776678889999999
Q ss_pred HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccc-cCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
+++++++||++.+.+..+......+.+...... .+| |+.++||||++|+|++.+.|..+.+++++.|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSK-----KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCC-----CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 744899999996544444444444555433211 122 24459999999999999999999999999998875
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-29 Score=164.81 Aligned_cols=158 Identities=58% Similarity=0.992 Sum_probs=150.0
Q ss_pred ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADF 90 (170)
Q Consensus 11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~ 90 (170)
.+-+|++.+.+|++++|++++||++||.-.||.|+.-. +...|+.|+++|+++|+.|++..+++|.+++|.+.+++++|
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 45689999999999999999999999999999999877 88999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
+...|+.+||++...+.++..+.-+|.+++...|+ ..+..|.||++-||||++|+|+.++.+...|++++..|+++|++
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 99999999999999999999999999999998887 45589999999999999999999999999999999999999863
No 9
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.7e-27 Score=156.21 Aligned_cols=163 Identities=64% Similarity=1.094 Sum_probs=155.0
Q ss_pred cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881 7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (170)
Q Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~ 86 (170)
....++-+|++.|.+|+.++|++++||++|+.=.||.|+.-..+..+|+.++++|+++|+++++..+++|+.++|.+.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 45567889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
+..++..+++..||++...|.+|..+..+|.+++...++..|.+|.||++-||||++|+++.++....++.+++..|+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 99999989999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred hcC
Q 030881 167 LGL 169 (170)
Q Consensus 167 l~~ 169 (170)
|++
T Consensus 169 L~~ 171 (171)
T KOG1651|consen 169 LAQ 171 (171)
T ss_pred hcC
Confidence 863
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-27 Score=158.80 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=115.1
Q ss_pred cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881 5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~ 83 (170)
.+..|+++|+|+|++.+|+.++|++++||++||+|| ..++|.|..++..|++.+.+|++.|.++++||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 478999999999999999999999999999999999 5899999999999999999999999999999986 8
Q ss_pred hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhH-hcc-CCccCCccccCceeEEECCCCcEEEEeCCCC---CchH
Q 030881 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK-SGK-WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT---SLLS 158 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~---~~~~ 158 (170)
....++|++ +++++||++ .|..+...+ .|+... ... +..+....+ ++||||++|+|++.+.... +.++
T Consensus 75 ~~~~~~F~~-k~~L~f~LL--SD~~~~v~~-~ygv~~~k~~~gk~~~~~~R---~TfvId~dG~I~~~~~~v~~~~h~~~ 147 (157)
T COG1225 75 PKSHKKFAE-KHGLTFPLL--SDEDGEVAE-AYGVWGEKKMYGKEYMGIER---STFVIDPDGKIRYVWRKVKVKGHADE 147 (157)
T ss_pred HHHHHHHHH-HhCCCceee--ECCcHHHHH-HhCcccccccCccccccccc---eEEEECCCCeEEEEecCCCCcccHHH
Confidence 899999997 889999999 555544332 233222 111 111112333 9999999999999984433 3334
Q ss_pred HHHHHHHH
Q 030881 159 LEHDIKKL 166 (170)
Q Consensus 159 l~~~l~~~ 166 (170)
+.+.|+++
T Consensus 148 vl~~l~~l 155 (157)
T COG1225 148 VLAALKKL 155 (157)
T ss_pred HHHHHHHh
Confidence 44444443
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=1.7e-27 Score=162.57 Aligned_cols=133 Identities=28% Similarity=0.427 Sum_probs=101.7
Q ss_pred cCCcccccceeeC--CCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881 7 QNPESIFDLSVKD--ARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (170)
Q Consensus 7 ~~g~~~p~f~l~~--~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~ 83 (170)
.+|+++|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.++++++.++++++.+++|+.+ +
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~ 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence 3799999999966 99999999999999999999999 99999999999999999999999999999987 3
Q ss_pred hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS 155 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~ 155 (170)
...+.++++ +++.+||++ .|..+.... .+... .....+.+ ...|+++|||++|+|++.+.|..+
T Consensus 73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~---~~~~~-~~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 73 DPPVREFLK-KYGINFPVL--SDPDGALAK---ALGVT-IMEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHHHH-HTTTTSEEE--EETTSHHHH---HTTCE-EECCTTTT-SSSSEEEEEETTSBEEEEEESSBT
T ss_pred CHHHHHHHH-hhCCCceEE--echHHHHHH---HhCCc-cccccccC-CeecEEEEEECCCEEEEEEeCCCC
Confidence 334888887 679999998 554333222 11110 00000000 134499999999999999988776
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.95 E-value=7.9e-27 Score=160.64 Aligned_cols=147 Identities=15% Similarity=0.242 Sum_probs=112.7
Q ss_pred ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
..+..|+.+|+|++.+.+|+.+++++++||++||+||++ ||+.|..+++.|++++++++++|+++|+|+.|
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d-------- 73 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD-------- 73 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------
Confidence 457889999999999999999999999999999999986 68899999999999999999999999999976
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccc-cCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-WNFAKFLVDKNGQVVDRYYPTTSLLSLEH 161 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-~~p~~~lid~~G~i~~~~~~~~~~~~l~~ 161 (170)
+.+++++|++ +++.+||++ .|..+.... .|.....+...+...+ ..|++||||++|+|++.+.|....+.+.+
T Consensus 74 ~~~~~~~~~~-~~~~~~~~l--~D~~~~~~~---~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 74 KPEKLSRFAE-KELLNFTLL--SDEDHQVAE---QFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred CHHHHHHHHH-HhCCCCeEE--ECCCchHHH---HhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 6789999997 779999988 555433222 1211111100000000 01478999999999999998776666555
Q ss_pred HHH
Q 030881 162 DIK 164 (170)
Q Consensus 162 ~l~ 164 (170)
.|+
T Consensus 148 ~~~ 150 (154)
T PRK09437 148 VLD 150 (154)
T ss_pred HHH
Confidence 443
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.95 E-value=3.2e-27 Score=167.13 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=109.3
Q ss_pred ccCCcccccceeeCCC--CCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 6 IQNPESIFDLSVKDAR--GHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~--g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
...|.++|+|++.+.+ |+.++++++ +||++||+||++||++|+.++|.++++.+ +++.+++|+.+ +
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~ 107 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D 107 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 3468899999999998 467777765 89999999999999999999999988754 47999999976 3
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+.++.++|++ +++.+||++. .|..+.... . +++...|++|+||++|+|++.+.|..+.+++++.
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~-~D~~~~~~~---~-----------~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 108 DRQKAISWLK-ELGNPYALSL-FDGDGMLGL---D-----------LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred CHHHHHHHHH-HcCCCCceEE-EcCCccHHH---h-----------cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence 6778889997 7799998632 454433221 1 2344445999999999999999999999999999
Q ss_pred HHHHhc
Q 030881 163 IKKLLG 168 (170)
Q Consensus 163 l~~~l~ 168 (170)
|+.+++
T Consensus 172 i~~~~~ 177 (185)
T PRK15412 172 IKPLWE 177 (185)
T ss_pred HHHHHH
Confidence 988875
No 14
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.94 E-value=1.9e-26 Score=161.40 Aligned_cols=144 Identities=22% Similarity=0.319 Sum_probs=117.1
Q ss_pred CcccccceeeCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881 9 PESIFDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (170)
Q Consensus 9 g~~~p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~ 87 (170)
|.++|+|++.+.+|+.++++++ +|+++||+||++|||.|..+++.|++++++++++++.+++|++|....++.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 999999999999999999999999999999998889999999985443344678999
Q ss_pred HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC---------CCCCchH
Q 030881 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY---------PTTSLLS 158 (170)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~---------~~~~~~~ 158 (170)
+++++ +++..||++ .|..+.... . .++.+.|++||||++|+|++... +..+..+
T Consensus 81 ~~~~~-~~~~~~~~l--~D~~~~~~~---~-----------~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKAK-EHGYPFPYL--LDETQEVAK---A-----------YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHH-HCCCCceEE--ECCchHHHH---H-----------cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 99997 789999988 554432211 1 23444569999999999998841 1224467
Q ss_pred HHHHHHHHhcC
Q 030881 159 LEHDIKKLLGL 169 (170)
Q Consensus 159 l~~~l~~~l~~ 169 (170)
+.++|+++|++
T Consensus 144 ~~~~i~~~l~~ 154 (171)
T cd02969 144 LRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHcC
Confidence 99999998864
No 15
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.94 E-value=8.3e-27 Score=154.75 Aligned_cols=123 Identities=27% Similarity=0.481 Sum_probs=100.9
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~ 86 (170)
+|+++|+|++.+.+|+.+++++++||++||.||++ ||+.|..+++.|++++++++++|+.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58999999999999999999999999999999998 99999999999999999999999999999986 6778
Q ss_pred HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
++++.+ .++.+||++ .|..+.... .|..... ......|++||||++|+|+++
T Consensus 73 ~~~~~~-~~~~~~~~~--~D~~~~~~~---~~~~~~~-----~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFLE-EYGLPFPVL--SDPDGELAK---AFGIEDE-----KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHH-HHTCSSEEE--EETTSHHHH---HTTCEET-----TTSEESEEEEEEETTSBEEEE
T ss_pred hhhhhh-hhccccccc--cCcchHHHH---HcCCccc-----cCCceEeEEEEECCCCEEEeC
Confidence 999997 778999999 564433221 1111100 011145599999999999985
No 16
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=1.7e-26 Score=156.38 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=109.3
Q ss_pred cccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (170)
Q Consensus 10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~ 88 (170)
+++|+|++.+.+|+.+++++++||++||+|| ++||+.|..+++.|++++++++++++++++|+.| +.+.+.
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 4689999999999999999999999999999 5899999999999999999999889999999986 678899
Q ss_pred HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
+|++ +++.+||++ .|..+.... .|.....+. . ......|++||||++|+|++.+.|....+++.+.|
T Consensus 73 ~~~~-~~~~~~~~l--~D~~~~~~~---~~gv~~~~~-~-~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFAE-KYGLPFPLL--SDPDGKLAK---AYGVWGEKK-K-KYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHH-HhCCCceEE--ECCccHHHH---HhCCccccc-c-ccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 9997 779999988 555443222 121111100 0 01112259999999999999999988777777665
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=5.9e-26 Score=158.99 Aligned_cols=139 Identities=24% Similarity=0.399 Sum_probs=118.5
Q ss_pred ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~ 83 (170)
..+..|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.++++++++++.++.+++|+.|. +
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------T 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------C
Confidence 346789999999999999999999999999999999999999999999999999999998889999999973 6
Q ss_pred hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
.+.+.++.+ +++.+||++ .|..+.... . .++...|++|+||++|+|+..+.|..+.+++.+.|
T Consensus 106 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 106 ELAVKNFVN-RYGLTFPVA--IDKGRQVID---A-----------YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred HHHHHHHHH-HhCCCceEE--ECCcchHHH---H-----------cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 788899996 889999988 554432221 1 23445569999999999999999988888888887
Q ss_pred HHH
Q 030881 164 KKL 166 (170)
Q Consensus 164 ~~~ 166 (170)
+++
T Consensus 169 ~~~ 171 (173)
T PRK03147 169 EKI 171 (173)
T ss_pred HHh
Confidence 754
No 18
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.94 E-value=7.8e-26 Score=158.47 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=107.4
Q ss_pred ccCCcccccceeeCCCCC--eecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 6 IQNPESIFDLSVKDARGH--EVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~--~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
...|.++|+|++.+.+|+ .++++++ +||+++|+||++||++|+.+.|.++++.+ +++++++|+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~------- 102 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD------- 102 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence 457899999999999997 4555665 79999999999999999999999988764 369999999752
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+.++..+|++ +++.+||.+. .|..+.... . +++...|++|+||++|+|++++.|..+.+++++.
T Consensus 103 ~~~~~~~~~~-~~~~~f~~v~-~D~~~~~~~---~-----------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~ 166 (173)
T TIGR00385 103 QSQNALKFLK-ELGNPYQAIL-IDPNGKLGL---D-----------LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG 166 (173)
T ss_pred ChHHHHHHHH-HcCCCCceEE-ECCCCchHH---h-----------cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence 5566778886 7788888431 455443322 1 1233334999999999999999999999999999
Q ss_pred HHHHhc
Q 030881 163 IKKLLG 168 (170)
Q Consensus 163 l~~~l~ 168 (170)
|++++.
T Consensus 167 l~~~~~ 172 (173)
T TIGR00385 167 FLPAME 172 (173)
T ss_pred HHHHhh
Confidence 998875
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.94 E-value=2.3e-25 Score=155.15 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=106.1
Q ss_pred ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
..+..|+++|+|++.+.+|+.+++++++||++||+||++| |++|..+++.|+++++++. ++++++||.|
T Consensus 16 ~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D-------- 85 (167)
T PRK00522 16 SLPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD-------- 85 (167)
T ss_pred CCCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------
Confidence 4567899999999999999999999999999999999999 9999999999999999993 7999999986
Q ss_pred ChHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCC--CCchH
Q 030881 83 SNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPT--TSLLS 158 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~--~~~~~ 158 (170)
+....++|.+ ++++. ++++ .|..+..... .|.....|. ..|.. .|++||||++|+|++.+.+. .+..+
T Consensus 86 ~~~~~~~f~~-~~~~~~~~~l--sD~~~~~~~~--~~gv~~~~~~~~g~~---~r~tfvId~~G~I~~~~~~~~~~~~~~ 157 (167)
T PRK00522 86 LPFAQKRFCG-AEGLENVITL--SDFRDHSFGK--AYGVAIAEGPLKGLL---ARAVFVLDENNKVVYSELVPEITNEPD 157 (167)
T ss_pred CHHHHHHHHH-hCCCCCceEe--ecCCccHHHH--HhCCeecccccCCce---eeEEEEECCCCeEEEEEECCCcCCCCC
Confidence 5677888887 77876 6777 5532212221 221111110 01112 34999999999999998432 33334
Q ss_pred HHHHHHH
Q 030881 159 LEHDIKK 165 (170)
Q Consensus 159 l~~~l~~ 165 (170)
+++.|+.
T Consensus 158 ~~~~l~~ 164 (167)
T PRK00522 158 YDAALAA 164 (167)
T ss_pred HHHHHHH
Confidence 5555544
No 20
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=1.7e-25 Score=153.01 Aligned_cols=130 Identities=19% Similarity=0.287 Sum_probs=104.2
Q ss_pred ccCCcccccceeeCCCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881 6 IQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS 83 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~ 83 (170)
+..|+++|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++|+++++|+.| +
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~ 72 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------S 72 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------C
Confidence 467999999999999999999999999 99999888 8999999999999999999999889999999986 5
Q ss_pred hHHHHHHHHhhcCCCCCceEEeecC--CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881 84 NDQIADFVCTRFKSEFPIFEKIDVN--GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~ 154 (170)
.+.+++|.+ +++.+||++ .|.. +..+. .+.....+ .++ +.|++||||++|+|++.+.|..
T Consensus 73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~~~---~~g~~~~~----~~~-~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 PFSLRAWAE-ENGLTFPLL--SDFWPHGEVAK---AYGVFDED----LGV-AERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHHH-hcCCCceEe--cCCCchhHHHH---HhCCcccc----CCC-ccceEEEECCCCEEEEEEecCC
Confidence 678899987 779999988 4533 22211 12111111 012 2458899999999999988765
No 21
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=4.9e-25 Score=154.47 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=103.9
Q ss_pred CCcccccceeeCCCC----CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 8 NPESIFDLSVKDARG----HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
+|+++|+|++.+.+| +.+++++++||++||+|| ++||++|..+++.|++++++|.+.|+.+++||.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 489999999999887 789999999999999999 7999999999999999999999999999999986
Q ss_pred ChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881 83 SNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-- 154 (170)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-- 154 (170)
+.+..+++.+.. .+.+||++ .|..+..+. .|.....+ .+..+ |++||||++|+|++.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~~~~---~~gv~~~~--~~~~~---p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKKISR---DYGVLDEE--EGVAL---RGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchhHHH---HhCCcccc--CCcee---eEEEEECCCCeEEEEEecCCCC
Confidence 344445555421 35778888 565544332 12111111 01223 49999999999999985543
Q ss_pred --CchHHHHHHHHH
Q 030881 155 --SLLSLEHDIKKL 166 (170)
Q Consensus 155 --~~~~l~~~l~~~ 166 (170)
+.+++.+.|+.+
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 334455555443
No 22
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.93 E-value=2.2e-25 Score=157.89 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=97.2
Q ss_pred cCCcccccceeeC-CCCC--eecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 7 QNPESIFDLSVKD-ARGH--EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 7 ~~g~~~p~f~l~~-~~g~--~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
..|+++|+|++.+ .+|. .+++++++||++||+|| ++||++|..+++.|++++++|+++|+++++||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 6799999999998 5776 68888999999999999 9999999999999999999999999999999987
Q ss_pred ChHHHHHHHHh---hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881 83 SNDQIADFVCT---RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (170)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~ 153 (170)
+....++|... ..+++||++ .|..+..+. .|+ .... ..|. +.|++||||++|+|++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpll--sD~~~~~a~-~~g--v~~~--~~g~---~~p~tfiID~~G~I~~~~~~~ 138 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPML--GDPTGVLTR-NFG--VLIE--EAGL---ADRGTFVIDPEGVIQAVEITD 138 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEE--ECCccHHHH-HhC--Cccc--CCCc---eeeEEEEECCCCEEEEEEEeC
Confidence 44555555542 135788988 555433222 111 1100 0011 235999999999999997543
No 23
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.92 E-value=7.1e-25 Score=146.24 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=98.4
Q ss_pred cccccceeeCCCC--CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881 10 ESIFDLSVKDARG--HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (170)
Q Consensus 10 ~~~p~f~l~~~~g--~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~ 87 (170)
+++|+|++.+.+| ..+++++++||++||+||++||++|+.++|.++++.+++ ++++++|+.+ ++.+.+
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~ 70 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENA 70 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHH
Confidence 3689999999998 889999999999999999999999999999999998775 4999999976 478899
Q ss_pred HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchH
Q 030881 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS 158 (170)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~ 158 (170)
++|++ +++..|+.+. .|.++.... . +++...|++|+||++|+|++++.|..+.+.
T Consensus 71 ~~~~~-~~~~~~~~~~-~D~~~~~~~---~-----------~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 71 LAWLA-RHGNPYAAVG-FDPDGRVGI---D-----------LGVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHHHH-hcCCCCceEE-ECCcchHHH---h-----------cCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 99987 7788876432 454333221 1 223334499999999999999998777654
No 24
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=6.6e-25 Score=146.26 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=92.0
Q ss_pred CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCc
Q 030881 22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (170)
Q Consensus 22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 101 (170)
|+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|+.+.+.. .++.++++++++ +++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~~-~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAVL-RYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHHH-HcCCCCCE
Confidence 468999999999999999999999999999999999999999899999998754321 247889999997 88999998
Q ss_pred eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (170)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~ 153 (170)
+ .|..+.... . +++.+.|++||||++|+|++++.|.
T Consensus 90 ~--~D~~~~~~~---~-----------~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 A--NDNDYATWR---A-----------YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred E--ECCchHHHH---H-----------hCCCcCCeEEEECCCCcEEEEEecC
Confidence 8 554432221 1 2333445999999999999998774
No 25
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=1.7e-24 Score=147.18 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=101.0
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ 86 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~ 86 (170)
.|+++|+|++.+.+|+.+++++++||++||+||++| |++|+.+++.|++++++++ |+.+++|+.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999988 7999999999999999984 7999999986 5667
Q ss_pred HHHHHHhhcCC-CCCceEEeecC-CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--CchHHHHH
Q 030881 87 IADFVCTRFKS-EFPIFEKIDVN-GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--SLLSLEHD 162 (170)
Q Consensus 87 ~~~~~~~~~~~-~~p~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~~~l~~~ 162 (170)
.++|.+ +++. +||++ .|.. +.... .|. .. .+ ..+.. .|++||||++|+|++.+.|.. ...++++.
T Consensus 72 ~~~~~~-~~~~~~~~~l--~D~~~~~~~~-~~g--v~-~~-~~~~~---~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~ 140 (143)
T cd03014 72 QKRWCG-AEGVDNVTTL--SDFRDHSFGK-AYG--VL-IK-DLGLL---ARAVFVIDENGKVIYVELVPEITDEPDYEAA 140 (143)
T ss_pred HHHHHH-hcCCCCceEe--ecCcccHHHH-HhC--Ce-ec-cCCcc---ceEEEEEcCCCeEEEEEECCCcccCCCHHHH
Confidence 788886 6665 78888 4543 22211 111 10 00 01111 349999999999999987643 22345544
Q ss_pred H
Q 030881 163 I 163 (170)
Q Consensus 163 l 163 (170)
|
T Consensus 141 ~ 141 (143)
T cd03014 141 L 141 (143)
T ss_pred h
Confidence 4
No 26
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2.9e-24 Score=153.75 Aligned_cols=143 Identities=24% Similarity=0.395 Sum_probs=103.9
Q ss_pred ccCCcccccceeeCCCCCeecCCCCCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~ 84 (170)
+..|+++|+|++.+..| .+++++++||++|| +||++||++|..+++.|++++++|+++|+++++||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 46899999999999888 69999999998776 6889999999999999999999999999999999987 33
Q ss_pred HHHHHHHH---hhcC--CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe----CCCCC
Q 030881 85 DQIADFVC---TRFK--SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY----YPTTS 155 (170)
Q Consensus 85 ~~~~~~~~---~~~~--~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~----~~~~~ 155 (170)
....++++ ++++ ++||++ .|.++..+. .|+... ...|..+ |++||||++|+|++.. ....+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll--~D~~~~ia~-~ygv~~----~~~g~~~---p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVI--ADIDKELAR-EYNLID----ENSGATV---RGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEE--ECCChHHHH-HcCCcc----ccCCcEE---eEEEEECCCCEEEEEEEeCCCCCCC
Confidence 44333332 2444 579998 565544332 122110 0111234 4999999999999885 22345
Q ss_pred chHHHHHHHHHh
Q 030881 156 LLSLEHDIKKLL 167 (170)
Q Consensus 156 ~~~l~~~l~~~l 167 (170)
.+++.+.|+++.
T Consensus 143 ~~ellr~l~~l~ 154 (202)
T PRK13190 143 IDEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHHhh
Confidence 666666666654
No 27
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.92 E-value=1.8e-24 Score=146.78 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=101.6
Q ss_pred ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhccCC---cEEEEeecCCCCCCCCCChHH
Q 030881 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQ 86 (170)
Q Consensus 11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~---v~~v~is~d~~~~~~~~~~~~ 86 (170)
.+|+|++.+.+|+.+++.+++||++||+||++||++ |..+++.++++++++++++ +++++|+.|. ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998875 9999999973 2256788
Q ss_pred HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC---ccCCccccCceeEEECCCCcEEEEeCC
Q 030881 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG---IFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+++|++ +++.+||++. +.......-...+.....+. ..+..+.|.|.+||||++|+|++.+.+
T Consensus 77 ~~~~~~-~~~~~~~~l~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYAK-AFGPGWIGLT--GTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHH-HhCCCcEEEE--CCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 999997 7788999883 32211111111111111111 011235567789999999999998754
No 28
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=7.8e-24 Score=152.48 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=103.7
Q ss_pred cCCcccccceeeCCCCCeecCCCCCCcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881 7 QNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (170)
Q Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~ 85 (170)
..|+++|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++|+++++||+|.. .+..
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~-----~~~~ 77 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV-----FSHI 77 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHH
Confidence 68999999999999999888899999985 67889999999999999999999999999999999999731 1122
Q ss_pred HHHHHHHh--hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC-C---CCchHH
Q 030881 86 QIADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP-T---TSLLSL 159 (170)
Q Consensus 86 ~~~~~~~~--~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~-~---~~~~~l 159 (170)
++.+++++ ..+++||++ .|..+..+. .|+.. .++.....+ |++||||++|+|++.+.. . .+.+++
T Consensus 78 ~w~~~i~~~~~~~i~fPil--~D~~~~va~-~yg~~---~~~~~~~~~---R~tfIID~dG~Ir~~~~~p~~~gr~~~ei 148 (215)
T PRK13599 78 KWVEWIKDNTNIAIPFPVI--ADDLGKVSN-QLGMI---HPGKGTNTV---RAVFIVDDKGTIRLIMYYPQEVGRNVDEI 148 (215)
T ss_pred HHHHhHHHhcCCCCceeEE--ECCCchHHH-HcCCC---ccCCCCcee---eEEEEECCCCEEEEEEEcCCCCCCCHHHH
Confidence 33444442 246789999 565554332 22211 111100123 499999999999999532 1 234455
Q ss_pred HHHHHHH
Q 030881 160 EHDIKKL 166 (170)
Q Consensus 160 ~~~l~~~ 166 (170)
.+.|+++
T Consensus 149 lr~l~~l 155 (215)
T PRK13599 149 LRALKAL 155 (215)
T ss_pred HHHHHHh
Confidence 5555543
No 29
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.91 E-value=8.5e-24 Score=167.91 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=108.1
Q ss_pred ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881 6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~ 85 (170)
...++.+|+|++.|.+|+.++++ +||++||+|||+||++|+.++|.|++++++++..++.||+|+++.... ..+.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence 34566899999999999999988 799999999999999999999999999999987789999999753221 23456
Q ss_pred HHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 86 QIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 86 ~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
+..++.+ ..+. ++|++ .|..+..+. . .++...|+++|||++|+|+..+.|..+.+++.+.|+
T Consensus 108 ~~~~~~~-~~~y~~~pV~--~D~~~~lak---~-----------fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWYA-GLDYPKLPVL--TDNGGTLAQ---S-----------LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHH-hCCCccccee--ccccHHHHH---H-----------cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 6777775 4343 46766 444332211 1 234455599999999999999999999988888887
No 30
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.91 E-value=1.9e-23 Score=148.18 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=98.6
Q ss_pred cccCCcccccceeeCCCCCeecCC--CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 5 FIQNPESIFDLSVKDARGHEVDLS--TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~--~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
.+..|+++|+|+++|.+|+.+++. +++||+++|+||++|||+|+.++|.+++++++. ++.+++|+.+
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~-------- 113 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG-------- 113 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------
Confidence 357899999999999999999995 569999999999999999999999999988653 5778888743
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+.++..+|++ +++.+++.+. ..+... .. +++...|++|+||++|+|+++.. ....+.+++.
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~---~~~~i~---~~-----------y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l 174 (189)
T TIGR02661 114 TPAEHRRFLK-DHELGGERYV---VSAEIG---MA-----------FQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL 174 (189)
T ss_pred CHHHHHHHHH-hcCCCcceee---chhHHH---Hh-----------ccCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence 6788899997 7788876542 111111 11 22333449999999999998732 2344556666
Q ss_pred HHHH
Q 030881 163 IKKL 166 (170)
Q Consensus 163 l~~~ 166 (170)
|+++
T Consensus 175 l~~l 178 (189)
T TIGR02661 175 LEAD 178 (189)
T ss_pred HHHH
Confidence 5543
No 31
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=1.2e-23 Score=148.32 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=105.0
Q ss_pred ccCCcccccceeeCC-CC--CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881 6 IQNPESIFDLSVKDA-RG--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP 81 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~-~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~ 81 (170)
+..|.++|+|++... +| ..++|++++||++||+|| ++||++|..+++.|++++++|.++|+++++||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 578999999998763 34 567888999999999999 9999999999999999999999999999999986
Q ss_pred CChHHHHHHHHhh---cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC----C
Q 030881 82 GSNDQIADFVCTR---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT----T 154 (170)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~----~ 154 (170)
+....++|.+.. .+++||++ .|.++.... .|+... + . .++ ..|++||||++|+|++.+... .
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpll--sD~~~~ia~-~ygv~~---~-~--~g~-~~r~tfIID~~G~I~~~~~~~~~~~~ 143 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMI--GDPTGALTR-NFDNMR---E-D--EGL-ADRATFVVDPQGIIQAIEVTAEGIGR 143 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEE--EcCchHHHH-HcCCCc---c-c--CCc-eeeEEEEECCCCEEEEEEEeCCCCCC
Confidence 677788887532 47889999 555433322 122110 0 0 112 124999999999999996443 2
Q ss_pred CchHHHHHHHH
Q 030881 155 SLLSLEHDIKK 165 (170)
Q Consensus 155 ~~~~l~~~l~~ 165 (170)
+.+++.+.|++
T Consensus 144 ~~~eil~~l~a 154 (187)
T PRK10382 144 DASDLLRKIKA 154 (187)
T ss_pred CHHHHHHHHHh
Confidence 44455555543
No 32
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.91 E-value=2.4e-23 Score=140.92 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=101.6
Q ss_pred ccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881 11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD 89 (170)
Q Consensus 11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~ 89 (170)
.+|+|++.|.+|+.+++++++||++||+|| ++||++|..+++.|+++++++++.++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999986 5678888
Q ss_pred HHHhhc-CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881 90 FVCTRF-KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS 155 (170)
Q Consensus 90 ~~~~~~-~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~ 155 (170)
|.+ ++ +.+||++ .|..+.... .+.....+.. ......|++||||++|+|++.+.|...
T Consensus 73 ~~~-~~~~~~~~~l--~D~~~~~~~---~~g~~~~~~~--~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WAE-KEGGLNFPLL--SDPDGEFAK---AYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHh-cccCCCceEE--ECCChHHHH---HcCCcccccc--ccCceeEEEEEECCCCcEEEEEecCCC
Confidence 887 66 8889988 555443222 1111111110 011234599999999999999888665
No 33
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.91 E-value=2.2e-23 Score=136.47 Aligned_cols=109 Identities=14% Similarity=0.223 Sum_probs=87.6
Q ss_pred ccceeeCCCCCeecCCCCC-CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881 13 FDLSVKDARGHEVDLSTYK-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (170)
Q Consensus 13 p~f~l~~~~g~~~~l~~~~-gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~ 91 (170)
|+|++.+.+|+.+++++++ ||++||+||++||++|+.++|.++++++++.+ ++.++.++ + ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999888754 48888775 3 3678888998
Q ss_pred HhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 92 CTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 92 ~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
+ +++. .+|++. +. . ... . +++...|++|+||++|+|+++
T Consensus 72 ~-~~~~~~~p~~~--~~--~-~~~--~-----------~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 72 K-KHGLEAFPYVL--SA--E-LGM--A-----------YQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred H-HhCCCCCcEEe--cH--H-HHh--h-----------cCCCCcCeEEEECCCCeEEec
Confidence 7 7787 489873 21 1 111 1 233444599999999999987
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=1.8e-23 Score=179.19 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=117.5
Q ss_pred ccCCcccccceeeC--CCCCeecC-CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 6 IQNPESIFDLSVKD--ARGHEVDL-STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 6 ~~~g~~~p~f~l~~--~~g~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
...|.++|+|...+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.+|+|+++.++. .+
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~--~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN--EK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc--cc
Confidence 45799999999876 68999988 579999999999999999999999999999999999899999998754422 23
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+.+++++++. +++++||++ .|....... . .++...|+++|||++|+|++++.|....+++.+.
T Consensus 469 ~~~~~~~~~~-~~~i~~pvv--~D~~~~~~~---~-----------~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~ 531 (1057)
T PLN02919 469 DLEAIRNAVL-RYNISHPVV--NDGDMYLWR---E-----------LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDL 531 (1057)
T ss_pred cHHHHHHHHH-HhCCCccEE--ECCchHHHH---h-----------cCCCccceEEEECCCCeEEEEEecccCHHHHHHH
Confidence 5678888986 889999988 443332111 1 2344555999999999999999998888889999
Q ss_pred HHHHhc
Q 030881 163 IKKLLG 168 (170)
Q Consensus 163 l~~~l~ 168 (170)
|++++.
T Consensus 532 l~~~l~ 537 (1057)
T PLN02919 532 VEAALQ 537 (1057)
T ss_pred HHHHHH
Confidence 888763
No 35
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=1.3e-23 Score=151.38 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=101.2
Q ss_pred ccccCCcccccceeeCCCCCeecCCCCCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
.++..|+++|+|++.+.+|+....++++||++|| +||++||++|..+++.|++++++|+++|+++++||+|
T Consensus 5 ~~~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D-------- 76 (215)
T PRK13191 5 RIPLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD-------- 76 (215)
T ss_pred ccccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------
Confidence 4567899999999999999744445589997776 7789999999999999999999999999999999997
Q ss_pred ChHH---HHHHHHh--hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC---
Q 030881 83 SNDQ---IADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--- 154 (170)
Q Consensus 83 ~~~~---~~~~~~~--~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--- 154 (170)
+... +.++.++ ..+++||++ .|.++..+. .|+... .+..+..+ |++||||++|+|++.+.+..
T Consensus 77 s~~~h~aw~~~~~~~~~~~i~fPll--sD~~~~ia~-~ygv~~---~~~~~~~~---r~tfIID~~G~Ir~~~~~~~~~g 147 (215)
T PRK13191 77 SNISHIEWVMWIEKNLKVEVPFPII--ADPMGNVAK-RLGMIH---AESSTATV---RAVFIVDDKGTVRLILYYPMEIG 147 (215)
T ss_pred CHHHHHHHHhhHHHhcCCCCceEEE--ECCchHHHH-HcCCcc---cccCCcee---EEEEEECCCCEEEEEEecCCCCC
Confidence 3343 3344432 236789999 565544332 122110 00001233 49999999999999854332
Q ss_pred -CchHHHHHHHH
Q 030881 155 -SLLSLEHDIKK 165 (170)
Q Consensus 155 -~~~~l~~~l~~ 165 (170)
+.+++.+.|++
T Consensus 148 r~~~eilr~l~a 159 (215)
T PRK13191 148 RNIDEILRAIRA 159 (215)
T ss_pred CCHHHHHHHHHH
Confidence 34444444444
No 36
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=1e-23 Score=151.14 Aligned_cols=141 Identities=14% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCcccccceeeCCCCCeecCCCCCC-cEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKG-KVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~g-k~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~ 85 (170)
.|+++|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++|+++++||+| +..
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 4889999999998884 89999988 665 557889999999999999999999999999999999997 344
Q ss_pred HHHHHHHh-----hcCCCCCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCCC----C
Q 030881 86 QIADFVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTT----S 155 (170)
Q Consensus 86 ~~~~~~~~-----~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~~----~ 155 (170)
...+|.+. +.+++||++ .|..+..+. .|+.. .++ ..+..+ |++||||++|+|++.+.+.. +
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~ia~-~yg~~---~~~~~~~~~~---r~~fiID~~G~I~~~~~~~~~~gr~ 142 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDREVAK-LLGMI---DPDAGSTLTV---RAVFIIDPDKKIRLILYYPATTGRN 142 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchHHHHH-HcCCc---cccCCCCcee---eEEEEECCCCeEEEEEecCCCCCCC
Confidence 44444431 157889999 555443322 11111 110 011223 48999999999999975533 3
Q ss_pred chHHHHHHHHH
Q 030881 156 LLSLEHDIKKL 166 (170)
Q Consensus 156 ~~~l~~~l~~~ 166 (170)
.+++.+.|+++
T Consensus 143 ~~ell~~l~~l 153 (203)
T cd03016 143 FDEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 37
>PRK15000 peroxidase; Provisional
Probab=99.90 E-value=5.8e-23 Score=146.66 Aligned_cols=132 Identities=16% Similarity=0.230 Sum_probs=94.9
Q ss_pred ccCCcccccceeeCCC--CC---eecCCCC-CCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881 6 IQNPESIFDLSVKDAR--GH---EVDLSTY-KGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE 78 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~--g~---~~~l~~~-~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~ 78 (170)
...|+++|+|++.+.. |+ .++++++ +||++||+||+ +||++|..+++.|++++++|+++|+++++||.|
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D---- 77 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD---- 77 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----
Confidence 3479999999999864 44 3466665 89999999998 599999999999999999999999999999987
Q ss_pred CCCCChHHHHHHHH---hhcC---CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 79 EEPGSNDQIADFVC---TRFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 79 ~~~~~~~~~~~~~~---~~~~---~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+....+.|.+ +..+ ++||++ .|.++..+. .|+... + ..|..+ |++||||++|+|++.+.+
T Consensus 78 ----~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~ia~-~ygv~~---~-~~g~~~---r~tfiID~~G~I~~~~~~ 143 (200)
T PRK15000 78 ----SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKREIQK-AYGIEH---P-DEGVAL---RGSFLIDANGIVRHQVVN 143 (200)
T ss_pred ----CHHHHHHHHhhHHHhCCccccCceEE--ECCCcHHHH-HcCCcc---C-CCCcEE---eEEEEECCCCEEEEEEec
Confidence 3444444432 2333 589999 565544332 122110 0 111234 499999999999999766
Q ss_pred CCC
Q 030881 153 TTS 155 (170)
Q Consensus 153 ~~~ 155 (170)
...
T Consensus 144 ~~~ 146 (200)
T PRK15000 144 DLP 146 (200)
T ss_pred CCC
Confidence 443
No 38
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=6.9e-23 Score=148.41 Aligned_cols=145 Identities=20% Similarity=0.341 Sum_probs=101.2
Q ss_pred ccccCCcccccceeeCCCCCeecCCC-CCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLST-YKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP 81 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~-~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~ 81 (170)
.++..|+++|+|++.+.+|. +++.+ ++||++|| +||++||++|..+++.|++++++|+++|+++++||+|
T Consensus 7 ~~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D------- 78 (222)
T PRK13189 7 RMPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID------- 78 (222)
T ss_pred ccccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC-------
Confidence 44678999999999999986 67776 59996654 7789999999999999999999999999999999997
Q ss_pred CChHHHHHHHH---hh--cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881 82 GSNDQIADFVC---TR--FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-- 154 (170)
Q Consensus 82 ~~~~~~~~~~~---~~--~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-- 154 (170)
+.....+|.+ +. .+++||++ .|..+..+. .|+.. .++..+.. .|++||||++|+|++...+..
T Consensus 79 -~~~~h~aw~~~~~~~~g~~i~fPll--sD~~~~ia~-~ygv~---~~~~~~~~---~r~tfIID~~G~Ir~~~~~~~~~ 148 (222)
T PRK13189 79 -QVFSHIKWVEWIKEKLGVEIEFPII--ADDRGEIAK-KLGMI---SPGKGTNT---VRAVFIIDPKGIIRAILYYPQEV 148 (222)
T ss_pred -CHHHHHHHHHhHHHhcCcCcceeEE--EcCccHHHH-HhCCC---ccccCCCc---eeEEEEECCCCeEEEEEecCCCC
Confidence 3444444443 12 24689988 565544332 12211 01110112 349999999999998865322
Q ss_pred --CchHHHHHHHHH
Q 030881 155 --SLLSLEHDIKKL 166 (170)
Q Consensus 155 --~~~~l~~~l~~~ 166 (170)
+.+++.+.|+++
T Consensus 149 gr~~~eilr~l~al 162 (222)
T PRK13189 149 GRNMDEILRLVKAL 162 (222)
T ss_pred CCCHHHHHHHHHHh
Confidence 344555555543
No 39
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.90 E-value=1.1e-22 Score=149.36 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=101.5
Q ss_pred cccCCcccccceeeC-CCC--CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881 5 FIQNPESIFDLSVKD-ARG--HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE 79 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~-~~g--~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~ 79 (170)
.+..|+++|+|++.+ .+| ..++++++ +||++|++|| ++||++|..+++.|++++++|+++|+++++||.|
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D----- 141 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD----- 141 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 457999999999987 455 46899998 8988888888 8999999999999999999999999999999987
Q ss_pred CCCChHHHHHHHHh---h---cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881 80 EPGSNDQIADFVCT---R---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~---~---~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~ 153 (170)
+....++|.+. + .+++||++ .|.++..+. .|+.. ...|..+ |++||||++|+|++.+...
T Consensus 142 ---s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~iak-ayGv~-----~~~g~a~---R~tFIID~dG~I~~~~~~~ 207 (261)
T PTZ00137 142 ---SPFSHKAWKELDVRQGGVSPLKFPLF--SDISREVSK-SFGLL-----RDEGFSH---RASVLVDKAGVVKHVAVYD 207 (261)
T ss_pred ---CHHHHHHHHhhhhhhccccCcceEEE--EcCChHHHH-HcCCC-----CcCCcee---cEEEEECCCCEEEEEEEeC
Confidence 44445555431 1 46789999 555433222 12111 0011233 4999999999999996322
Q ss_pred ----CCchHHHHHHHH
Q 030881 154 ----TSLLSLEHDIKK 165 (170)
Q Consensus 154 ----~~~~~l~~~l~~ 165 (170)
.+.+++.+.|++
T Consensus 208 ~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 208 LGLGRSVDETLRLFDA 223 (261)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 244445554443
No 40
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.89 E-value=1.1e-22 Score=145.48 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=103.6
Q ss_pred CccccccCCcccccceeeC----CCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881 1 MTSQFIQNPESIFDLSVKD----ARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (170)
Q Consensus 1 ~~~~~~~~g~~~p~f~l~~----~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~ 75 (170)
|.+.....|+++|+|++.+ .+|..+++++++||++||+||+ +||+.|..+++.|++++++|+++|+++++||.|
T Consensus 1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d- 79 (199)
T PTZ00253 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD- 79 (199)
T ss_pred CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-
Confidence 5566678999999999765 4568899999999999999995 889999999999999999999999999999987
Q ss_pred CCCCCCCChHHHHHHHHh-h-----cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 76 FGEEEPGSNDQIADFVCT-R-----FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~-----~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
+.....++... + .+.+||++ .|..+.... .|+... .. .|..+ |++||||++|+|++.
T Consensus 80 -------~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~ia~-~ygv~~--~~--~g~~~---r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 80 -------SEYAHLQWTLQERKKGGLGTMAIPML--ADKTKSIAR-SYGVLE--EE--QGVAY---RGLFIIDPKGMLRQI 142 (199)
T ss_pred -------CHHHHHHHHhChHhhCCccccccceE--ECcHhHHHH-HcCCcc--cC--CCceE---EEEEEECCCCEEEEE
Confidence 33333333211 1 13689999 555443322 121110 00 01123 499999999999998
Q ss_pred eCCCCCch-HHHHHHHHH
Q 030881 150 YYPTTSLL-SLEHDIKKL 166 (170)
Q Consensus 150 ~~~~~~~~-~l~~~l~~~ 166 (170)
+.+..... .+.+.|+.+
T Consensus 143 ~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 143 TVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred EecCCCCCCCHHHHHHHH
Confidence 75533322 344444433
No 41
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.89 E-value=8.1e-23 Score=139.59 Aligned_cols=130 Identities=19% Similarity=0.211 Sum_probs=94.1
Q ss_pred ccccceeeCCCCCeecCCCCC-CcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881 11 SIFDLSVKDARGHEVDLSTYK-GKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (170)
Q Consensus 11 ~~p~f~l~~~~g~~~~l~~~~-gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~ 88 (170)
.+|+|++.+.+|+.++++++. ++++ |++||++||++|+.+++.|+++++++++.|+.+++|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999874 4555 555569999999999999999999999889999999986 455666
Q ss_pred HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhc----------------cCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSG----------------KWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+|.+ +++.+||++ .|.++..... ++..... .....+......|++||||++|+|++.+.+
T Consensus 73 ~~~~-~~~~~~p~~--~D~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 73 AFDK-GKFLPFPVY--ADPDRKLYRA-LGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHH-hcCCCCeEE--ECCchhHHHH-cCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 7776 779999999 5655443221 1110000 000000111234599999999999999865
No 42
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=5.3e-23 Score=139.12 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=79.1
Q ss_pred CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-------CcEEEEeecCCCCCCCCCChHHHHHHHHhhc
Q 030881 23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-------GLEILAFPCNQFGEEEPGSNDQIADFVCTRF 95 (170)
Q Consensus 23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-------~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~ 95 (170)
..+++++++||+++|+|||+||++|+.++|.|++++++++++ ++.+|+||.|. +.++..+|++ ++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~~-~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFLK-DM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHHH-HC
Confidence 356888999999999999999999999999999999887653 69999999873 6677889997 77
Q ss_pred CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 96 KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 96 ~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
+++|+.+...+..+ ..+... +++...|++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~---~~l~~~----------y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFR---RELEAQ----------FSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHH---HHHHHH----------cCCCCCCEEEEECCCCcEEee
Confidence 87765431122110 011111 223334499999999999987
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.89 E-value=2.6e-22 Score=133.04 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=99.7
Q ss_pred ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
|+|++.+.+|+.+++.+++||+++|+||++||++|+..++.+++++++ +.+++|+++. ++.+.+.++.+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999877 5678888763 46889999997
Q ss_pred hhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 93 TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 93 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+++++||++ .|.++.... . +++.+.|++++||++| |++.+.|..+.+++.++
T Consensus 70 -~~~~~~~~~--~d~~~~~~~---~-----------~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 -KKGYGFPVI--NDPDGVISA---R-----------WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred -HcCCCccEE--ECCCcHHHH---h-----------CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 778999988 454322111 1 3445556999999999 99999998888887765
No 44
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.88 E-value=2.5e-22 Score=140.30 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred ccCCcccccceeeCC-----CC-----CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEE------E
Q 030881 6 IQNPESIFDLSVKDA-----RG-----HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI------L 69 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~-----~g-----~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~------v 69 (170)
+..|.++|..++.+. +| +.++.++++||+.||.|||+||++|+.+.|.|.++ +++|+.+ +
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~ 98 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT 98 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence 567899999988765 44 35677778999999999999999999999999999 4456888 9
Q ss_pred EeecCCCCCCCCCChHHHHHHHHhhcCCCCC---ceEEeecCCCCchhHHHHhHhccCCccCCccccCcee-EEECCCCc
Q 030881 70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFP---IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAK-FLVDKNGQ 145 (170)
Q Consensus 70 ~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~-~lid~~G~ 145 (170)
+|+.|+ .......-++.|++ +.+..|| ++ .|.++.... . +++...|++ ||||++|+
T Consensus 99 ~IN~dd---~~~~~~~fVk~fie-~~~~~~P~~~vl--lD~~g~v~~---~-----------~gv~~~P~T~fVIDk~Gk 158 (184)
T TIGR01626 99 IINADD---AIVGTGMFVKSSAK-KGKKENPWSQVV--LDDKGAVKN---A-----------WQLNSEDSAIIVLDKTGK 158 (184)
T ss_pred EEECcc---chhhHHHHHHHHHH-HhcccCCcceEE--ECCcchHHH---h-----------cCCCCCCceEEEECCCCc
Confidence 999873 01112334555665 6688888 66 555443321 2 234444477 89999999
Q ss_pred EEEEeCCCCCchHHHH
Q 030881 146 VVDRYYPTTSLLSLEH 161 (170)
Q Consensus 146 i~~~~~~~~~~~~l~~ 161 (170)
|++++.|..+.+++++
T Consensus 159 Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 159 VKFVKEGALSDSDIQT 174 (184)
T ss_pred EEEEEeCCCCHHHHHH
Confidence 9999999988887766
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.87 E-value=1.7e-21 Score=126.66 Aligned_cols=116 Identities=30% Similarity=0.510 Sum_probs=95.4
Q ss_pred cceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHh
Q 030881 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT 93 (170)
Q Consensus 14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~ 93 (170)
+|++.+.+|+.+++++++||+++|+||++||++|...++.|.++.+++.+.++.+++|++|. .+.+.++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~- 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLK- 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHH-
Confidence 47889999999999999999999999999999999999999999999987789999999973 14899999997
Q ss_pred hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 94 ~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+++.+|+++ .+....... . +++.+.|+++|+|++|+|++.+.|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~---~-----------~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVL--LDPDGELAK---A-----------YGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceE--EcCcchHHH---h-----------cCcCccceEEEECCCCcEEEEecC
Confidence 778888888 444222111 1 233345599999999999998764
No 46
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.86 E-value=2.1e-21 Score=134.93 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=90.9
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI 87 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~ 87 (170)
.....|+|++. +|+.+++++++ ||+||++|||+|++++|.|+++++++ ++.+++|++|. ..
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~--- 111 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG--- 111 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC---
Confidence 44466788874 99999999998 77899999999999999999999997 59999999873 11
Q ss_pred HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE-EeCCCCCchHHHHHHHHH
Q 030881 88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD-RYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~-~~~~~~~~~~l~~~l~~~ 166 (170)
..+||++ .+..+..... .|. ......|++||||++|++++ .+.|..+.+++++.|+++
T Consensus 112 --------~~~fPv~--~dd~~~~~~~--~~g---------~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 112 --------DTAFPEA--LPAPPDVMQT--FFP---------NIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred --------CCCCceE--ecCchhHHHH--HhC---------CCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 2588988 4311111111 110 10123449999999999975 689999999999999988
Q ss_pred hc
Q 030881 167 LG 168 (170)
Q Consensus 167 l~ 168 (170)
++
T Consensus 171 l~ 172 (181)
T PRK13728 171 LQ 172 (181)
T ss_pred Hh
Confidence 75
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.86 E-value=2.7e-21 Score=129.78 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=80.8
Q ss_pred CCC-CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881 20 ARG-HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (170)
Q Consensus 20 ~~g-~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
++| +++++++++||++||+||++||++|+.++|.++++++++++. ++.+++|++|. +.+++.+|++ +++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~~-~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYFS-EMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHHh-cCC
Confidence 344 489999999999999999999999999999999999999875 79999999873 6678889987 665
Q ss_pred CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881 97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (170)
Q Consensus 97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~ 150 (170)
.+..+...+. .....+.. . +++...|+++|||++|+|+++.
T Consensus 76 -~~~~~~~~d~--~~~~~~~~-----~-----~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 76 -PWLAVPFEDE--ELRELLEK-----Q-----FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred -CeEeeccCcH--HHHHHHHH-----H-----cCCCCCCEEEEECCCCCEEchh
Confidence 4433311110 00011111 0 2344445999999999999874
No 48
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.85 E-value=2.7e-21 Score=129.61 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=80.8
Q ss_pred eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881 17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (170)
Q Consensus 17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
|.+.+|+.+++++++||++||+||++||++|+.++|.+++++++++++ ++.+++|+.|. +.++..++++ +
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~~-~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYFS-K 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHHH-c
Confidence 468899999999999999999999999999999999999999999865 69999999873 5567777775 3
Q ss_pred cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
+. +..+. +... .....+. .. +++...|+++|||++|+|+.+
T Consensus 75 ~~--~~~~~-~~~~-~~~~~~~-----~~-----~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 75 MP--WLAVP-FSDR-ERRSRLN-----RT-----FKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CC--eeEcc-cCCH-HHHHHHH-----HH-----cCCCCCCEEEEECCCCCEEcc
Confidence 22 21110 1100 0000010 01 234445599999999999987
No 49
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.7e-20 Score=126.29 Aligned_cols=142 Identities=20% Similarity=0.311 Sum_probs=106.8
Q ss_pred ccCCcccccceeeCC-CCC---eecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881 6 IQNPESIFDLSVKDA-RGH---EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE 80 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~-~g~---~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~ 80 (170)
+..|+++|+|++... .|. +++++++.|||+|++|| +.+.+.|..++..+++.+++|+++|++++++|+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 568999999999987 664 89999998899999999 6899999999999999999999999999999998
Q ss_pred CCChHHHHHHHHh---hcC---CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881 81 PGSNDQIADFVCT---RFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~---~~~---~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~ 154 (170)
+.....+|... ..+ ++||++ .|.++..+.. |+.+.. ..|..+. .+|||||+|+|++...-..
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs~~-ygvl~~----~~g~a~R---~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIARA-YGVLHP----EEGLALR---GTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceE--EcCchhHHHH-cCCccc----CCCccee---EEEEECCCCeEEEEEEecC
Confidence 44555555442 455 689999 6777665542 222211 1113455 8899999999999943333
Q ss_pred ----CchHHHHHHHH
Q 030881 155 ----SLLSLEHDIKK 165 (170)
Q Consensus 155 ----~~~~l~~~l~~ 165 (170)
+.+++.+.|++
T Consensus 145 ~iGRn~dEilR~idA 159 (194)
T COG0450 145 TIGRNVDEILRVIDA 159 (194)
T ss_pred CCCcCHHHHHHHHHH
Confidence 34444444443
No 50
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.82 E-value=4.6e-20 Score=126.92 Aligned_cols=132 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCcccccceeeCCC---CCeecCCC-CCCcEEEEEEe-cCCCCCChhh-HHHHHHHHHHhccCCc-EEEEeecCCCCCCC
Q 030881 8 NPESIFDLSVKDAR---GHEVDLST-YKGKVLLIVNV-ASKCGMTNSN-YIELSQLYDKYKDQGL-EILAFPCNQFGEEE 80 (170)
Q Consensus 8 ~g~~~p~f~l~~~~---g~~~~l~~-~~gk~~lv~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~v-~~v~is~d~~~~~~ 80 (170)
.|+++|+|++.+.+ |+.++|++ ++||++||+|+ +.|||.|..+ ++.+++.+++|++.|+ .+++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999985 99999999 58887777777 7999999999 9999999999999999 69999986
Q ss_pred CCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881 81 PGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~ 154 (170)
+....++|++ +.+. +||++ .|....... .|+....... .|........+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~~-~~~~~~~f~lL--sD~~~~~~~-~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWGK-ALGAKDKIRFL--ADGNGEFTK-ALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHHH-hhCCCCcEEEE--ECCCHHHHH-HcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 7788888987 6676 89999 555433222 2222111110 011111133889999 699999865543
No 51
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.82 E-value=3.4e-20 Score=129.84 Aligned_cols=137 Identities=19% Similarity=0.287 Sum_probs=101.7
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCCh
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSN 84 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~ 84 (170)
.....|+|+|.|.+|+.+++++++||++||+|..+.|| .|...+..|+++++.+.+. .+++++||+|+ +.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP----~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP----ERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST----TTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC----CCCCH
Confidence 55678899999999999999999999999999999998 7999999999999988764 69999999995 56899
Q ss_pred HHHHHHHHhhcCCCCCceEEeecCCCCchhHHH-HhH--hccC---CccCCccccCceeEEECCCCcEEEEeCC
Q 030881 85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYK-LLK--SGKW---GIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~-~~~--~~~~---~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+.+++|++ .++.++..+...... .+.+.. +.. ...+ +...+.+.|...+|||||+|+|+..|.+
T Consensus 104 ~~L~~Y~~-~~~~~~~~ltg~~~~---i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYAK-KFGPDFIGLTGSREE---IEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHH-CHTTTCEEEEEEHHH---HHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHH-hcCCCcceeEeCHHH---HHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 99999998 788887766421111 111111 111 0000 1112567788899999999999998754
No 52
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.81 E-value=4.5e-19 Score=127.07 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=113.8
Q ss_pred cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhc---cCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYK---DQGLEILAFPCNQFGEEEPGSNDQIAD 89 (170)
Q Consensus 14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~---~~~v~~v~is~d~~~~~~~~~~~~~~~ 89 (170)
+|+|.|.+|+.+++.+++||++||+|..|+|| .|...+..|.++++++. ...++++.|++|+ +.|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP----erDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP----ERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC----CCCCHHHHHH
Confidence 79999999999999999999999999999999 89999999999999988 3359999999996 6789999999
Q ss_pred HHHhhcCCCCCceEEeecCCCCchhHH-HHhHh--ccCCc--cCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 90 FVCTRFKSEFPIFEKIDVNGEHASPLY-KLLKS--GKWGI--FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~-~~~~~--~~~~~--~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
|..-.+...|..+. .. ....+.+. .|..- ..+.. ..+.+-|+..+|+||++|+++..+.+...++++.+.|+
T Consensus 125 Y~~~~~~~~~~~lt--g~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~ 201 (207)
T COG1999 125 YAELNFDPRWIGLT--GT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLK 201 (207)
T ss_pred HhcccCCCCeeeee--CC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHH
Confidence 98512333343342 11 11111111 11111 11111 12678889999999999999999888788899999999
Q ss_pred HHhcC
Q 030881 165 KLLGL 169 (170)
Q Consensus 165 ~~l~~ 169 (170)
.++++
T Consensus 202 ~l~~~ 206 (207)
T COG1999 202 KLLKE 206 (207)
T ss_pred HHhhc
Confidence 99864
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=1.3e-19 Score=114.83 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=68.6
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
||+++|+||++||++|..++|.|.+++++++ +.++++|+|+.|. +.++++++.+ +++.+++.+ ......
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~~-~~~~~~~~~--~~~~~~ 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFLK-KNNFPWYNV--PFDDDN 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHHH-TCTTSSEEE--ETTTHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHHH-hcCCCceEE--eeCcch
Confidence 7999999999999999999999999999999 5579999999983 7889999997 555565544 221111
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcE
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV 146 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i 146 (170)
....... .++...|+++|+|++|+|
T Consensus 71 ~~~l~~~-----------~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 NSELLKK-----------YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHH-----------TT-TSSSEEEEEETTSBE
T ss_pred HHHHHHH-----------CCCCcCCEEEEECCCCCC
Confidence 1111111 344445599999999987
No 54
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.77 E-value=1.6e-18 Score=117.54 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=83.7
Q ss_pred eeeCCCCCeecCCCC--CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHh
Q 030881 16 SVKDARGHEVDLSTY--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT 93 (170)
Q Consensus 16 ~l~~~~g~~~~l~~~--~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~ 93 (170)
++.+++++...+++. +||++||+||++||++|+.+.|.+.++.+++.+. +.|+.|++|. . ...+.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~~- 70 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEID- 70 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHHH-
Confidence 345566666666654 7899999999999999999999999999999764 8899998762 1 1112222
Q ss_pred hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 94 ~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
++ +|...|++++++++|+++..+.|....+++.+.|++++++
T Consensus 71 ~~----------------------------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 71 RY----------------------------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred Hc----------------------------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 21 2333349999999999999999988888899999998864
No 55
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.76 E-value=4.6e-18 Score=116.23 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=72.9
Q ss_pred CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCc
Q 030881 22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI 101 (170)
Q Consensus 22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 101 (170)
|+.+++++ +.||+||++||++|++++|.|+++++++ ++.+++|++|. .. . ..||.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~---------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L---------TGFPD 98 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c---------ccccc
Confidence 55555544 5599999999999999999999999987 48899999873 11 0 13444
Q ss_pred eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE-EEeCCCCCchHHHHHHHHHh
Q 030881 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV-DRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~-~~~~~~~~~~~l~~~l~~~l 167 (170)
. .+.........+. .+ ++...|++|+||++|+++ ..+.|..+.+++++.|+++|
T Consensus 99 ~--~~~~~~~~~~~~~-----~~-----~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFP-----NP-----RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhc-----cC-----CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 3 2211111110010 00 233344999999998864 46888888888999888765
No 56
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.75 E-value=3e-17 Score=105.19 Aligned_cols=107 Identities=66% Similarity=1.147 Sum_probs=97.8
Q ss_pred ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
-+|++.|.+|+.++|++++||++||.=.|+.|+.-. +...|++++++|+++|+.|+++.+++|+.+++.+.+++++++.
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 378999999999999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEeecCCCCchhHHHHhH
Q 030881 93 TRFKSEFPIFEKIDVNGEHASPLYKLLK 120 (170)
Q Consensus 93 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~ 120 (170)
.+++.+||++...+.+|..+..+|.|++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHhC
Confidence 7799999999889999999888887753
No 57
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.73 E-value=1.8e-17 Score=118.75 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=109.7
Q ss_pred cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC-C--cEEEEeecCCCCCCCCCChHHHHH
Q 030881 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ-G--LEILAFPCNQFGEEEPGSNDQIAD 89 (170)
Q Consensus 14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~-~--v~~v~is~d~~~~~~~~~~~~~~~ 89 (170)
+|+|.|.+|+.++-.++.|||+|+||..|+|| .|..++..|.+..++..++ | +..|.|++|+ +.|+.+.+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP----eRD~~~~~~e 196 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP----ERDSVEVVAE 196 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc----ccCCHHHHHH
Confidence 79999999999999999999999999999999 8999999999999988766 3 4578899985 6789999999
Q ss_pred HHHhhcCCCCCceEEeecCCCCchhHHHHhH------hccCCc--cCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881 90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLK------SGKWGI--FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH 161 (170)
Q Consensus 90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~------~~~~~~--~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~ 161 (170)
|++ +|....- ..+|.. +++.+..+ +.-|.. .-+-|.|.=-+|||||+|+.+..+....+++++.+
T Consensus 197 Y~~-eF~pkll-----GLTGT~-eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~ 269 (280)
T KOG2792|consen 197 YVS-EFHPKLL-----GLTGTT-EQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD 269 (280)
T ss_pred HHH-hcChhhh-----cccCCH-HHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence 998 7776543 333332 11111111 121211 11456666678999999999998877778888888
Q ss_pred HHHHHhc
Q 030881 162 DIKKLLG 168 (170)
Q Consensus 162 ~l~~~l~ 168 (170)
.|.+-++
T Consensus 270 ~I~~~v~ 276 (280)
T KOG2792|consen 270 SILKHVA 276 (280)
T ss_pred HHHHHHH
Confidence 8876553
No 58
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=6.8e-16 Score=99.21 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
.+|+++||+||++||++|+.+.|.|+++.+++ .++.++.|+.|. + ....++++ +++
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~~-~~~------------- 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELCR-REK------------- 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHHH-HcC-------------
Confidence 46899999999999999999999999999999 349999998862 2 23334443 322
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
|...||++++ ++|+++.++.| ..++++.+.+.
T Consensus 69 ---------------------V~~~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 69 ---------------------IIEVPHFLFY-KDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred ---------------------CCcCCEEEEE-eCCeEEEEEeC-CCHHHHHHHHH
Confidence 2222385555 89999999988 45666666654
No 59
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.8e-15 Score=100.30 Aligned_cols=143 Identities=17% Similarity=0.257 Sum_probs=105.9
Q ss_pred cccCCcccccceeeCCCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 5 FIQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
.+..|+.+|+|+|.|.||++++|.++.| +++|++|| +...|.|.++...+++-++++++.+..++++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 4678999999999999999999999976 58888888 5778999999999999999999999999999987
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchH-HHH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS-LEH 161 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~-l~~ 161 (170)
+....+.|.. ++++.|.++ .|+.+.... .......| + ++.+.- +.||++++|...........|+. +.+
T Consensus 134 ~s~sqKaF~s-KqnlPYhLL--SDpk~e~ik---~lGa~k~p--~-gg~~~R-sh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 134 DSASQKAFAS-KQNLPYHLL--SDPKNEVIK---DLGAPKDP--F-GGLPGR-SHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred chHHHHHhhh-hccCCeeee--cCcchhHHH---HhCCCCCC--C-CCcccc-eEEEEecCCeEEEEEecccCccccHHH
Confidence 5677778886 778899988 565554322 11111112 1 122211 77999988776666555666664 444
Q ss_pred HHHH
Q 030881 162 DIKK 165 (170)
Q Consensus 162 ~l~~ 165 (170)
.++.
T Consensus 204 a~k~ 207 (211)
T KOG0855|consen 204 ALKF 207 (211)
T ss_pred HHHH
Confidence 4433
No 60
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.59 E-value=1.6e-14 Score=94.06 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=69.9
Q ss_pred CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
...|+++||+||++||++|+...|.+.++.+++++.++.++.|+++. .. ..+. +++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~---~l~~-~~~------------ 76 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ER---RLAR-KLG------------ 76 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cH---HHHH-HcC------------
Confidence 34689999999999999999999999999999987679999998752 11 1222 322
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
|...|+++++ ++|+++....|..+.+.+.+.|+++
T Consensus 77 ----------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 77 ----------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ----------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 2223388888 5899999888988888888887754
No 61
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=97.87 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=87.0
Q ss_pred ceeeCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881 15 LSVKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFV 91 (170)
Q Consensus 15 f~l~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~ 91 (170)
..|...+|..+... .++||.+.++|.|.||++|+...|.+.+++++.++. .+.+|.||.|. +.+++..|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence 66788899888777 479999999999999999999999999999999866 49999999984 888999999
Q ss_pred HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881 92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
. .++..|..+-..|.. ..+.... +.+...|+..+++++|+++..
T Consensus 88 ~-~~~~~W~~iPf~d~~--~~~l~~k-----------y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 88 L-EHHGDWLAIPFGDDL--IQKLSEK-----------YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred H-hcCCCeEEecCCCHH--HHHHHHh-----------cccCcCceeEEecCCCCEehH
Confidence 7 666666555211111 1111112 334444499999999988876
No 62
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.1e-14 Score=97.55 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=100.9
Q ss_pred CccccccCCcccccceeeCCCCCeecCCCCCCc-EEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881 1 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE 78 (170)
Q Consensus 1 ~~~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk-~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~ 78 (170)
|....+..|+.+|+|+..+..|+ +.+.++-|. |.|+ .--+.+.|.|..++..+..+..+|.++|++.+++|+|.+++
T Consensus 1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 45566789999999999888886 889998664 4333 33478999999999999999999999999999999997654
Q ss_pred CCCCChHHHHHHHHhhcC--CCCCceEEeecCCCCchhHHHHhHhc-cCCccCCccccCceeEEECCCCcEEEEe
Q 030881 79 EEPGSNDQIADFVCTRFK--SEFPIFEKIDVNGEHASPLYKLLKSG-KWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~p~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~i~~~p~~~lid~~G~i~~~~ 150 (170)
+. +.-.+++.|.+ ... ++||++ .|.....+-.+....... -+...|..+. .+|+|+++.+|+..+
T Consensus 80 H~-~Wi~DIks~~~-~~~~~~~yPII--aD~~rela~~l~MlD~~e~~~~~~~~T~R---avfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 80 HK-DWIKDIKSYAK-VKNHSVPYPII--ADPNRELAFLLNMLDPEEKKNIGDGKTVR---AVFVIDPDKKIRLSF 147 (224)
T ss_pred HH-HHHHHHHHHHh-ccCCCCCCCee--cCCchhhhhhhcccCHhHcCCCCCCceEE---EEEEECCCceEEEEE
Confidence 43 44556666665 334 789999 676665543221111100 0111113455 889999999999883
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.56 E-value=1.1e-14 Score=108.42 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=78.8
Q ss_pred CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
+...+++++|+++||+||++||++|+.+.|.|+++.+++ |+.+++|++|. ... ..||.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~ 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence 446788899999999999999999999999999999997 48999999873 110 124543
Q ss_pred EEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
.+ +...+ .. .+|...|++||++++ |++.....|..+.+++.+.|..+..
T Consensus 216 --~~-d~~la---~~-----------~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 216 --RP-DAGQA---QQ-----------LKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred --cC-CHHHH---HH-----------cCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 11 11111 11 245555699999995 5666667788889999988887654
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4e-14 Score=94.58 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.+++|||.|||+||+||+...|.|+++..++.++ +++..|++|. .- +.+. +|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~--------~~---ela~-~Y--------------- 111 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE--------HP---ELAE-DY--------------- 111 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc--------cc---chHh-hc---------------
Confidence 5689999999999999999999999999999766 9999998872 11 1111 21
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
+|...|+++++ +||+.+.+..|..+.+.+.+.|++.|+
T Consensus 112 -------------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 112 -------------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred -------------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 22233375555 689999999999999999999999886
No 65
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=3.4e-14 Score=91.39 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=67.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 107 (170)
.|+++||+||++||++|....+.+ .++.+.+++ ++.++.|+.+. +......+++ +++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~~-~~~----------- 69 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALLK-RFG----------- 69 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHHH-HcC-----------
Confidence 579999999999999999999887 577777765 69999998752 2222334443 322
Q ss_pred CCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeCCCCCchHHHHHH
Q 030881 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~~~~~~~~l~~~l 163 (170)
+...|+++++++ +|+++.++.|..+.+++.+.|
T Consensus 70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 222339999999 999999999988888877765
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.55 E-value=3.7e-14 Score=94.17 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=72.1
Q ss_pred CC-cEEEEEEecCCCCCChhhHHHHH---HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 31 KG-KVLLIVNVASKCGMTNSNYIELS---QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 31 ~g-k~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
.| |+++|+||++||++|+...+.+. ++.+.+++ ++.++.|+++. +. ...+|- . .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~~--~-------~---- 69 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDFD--G-------E---- 69 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeeccC--C-------C----
Confidence 57 99999999999999999998885 56666653 58899998763 11 111110 0 0
Q ss_pred cCCCCchhH-HHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 107 VNGEHASPL-YKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
......+ .. +++...|++++++++ |+++.+..|..+.+.+.+.|+.++++
T Consensus 70 --~~~~~~l~~~-----------~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 70 --ALSEKELARK-----------YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred --CccHHHHHHH-----------cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 0000111 11 234444599999999 89999999988889999999988764
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.54 E-value=3.8e-14 Score=90.56 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
++++||++||.||++||++|+.+.|.+.++.+++++ +.++.|+.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~ 57 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEE 57 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEEC
Confidence 357899999999999999999999999999999964 88888854
No 68
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=6.5e-14 Score=89.80 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.|++++|+||++||++|+...|.+.++++++++..+.++.++.| .. +.++ +++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~~-~~~-------------- 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTLK-RYR-------------- 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHHH-HcC--------------
Confidence 58999999999999999999999999999998666888888764 11 1222 322
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
+...|+++++ ++|+++.+..|. +++.+.+.|+++
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 2223364444 799999998884 777788877653
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=99.53 E-value=1.1e-13 Score=89.70 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=70.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.+++++|+||++||++|+...|.++++.+++.+. +.++.++++. . .. ..+ ++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~-~~---~~~-~~--------------- 71 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------N-PG---TAP-KY--------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------C-hh---HHH-hC---------------
Confidence 4789999999999999999999999999999764 8999998762 1 11 111 21
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
++...|+++++ ++|+++..+.|..+.+++.+.|++.|+
T Consensus 72 -------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 72 -------------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred -------------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 12223387777 699999999998888889999988764
No 70
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.53 E-value=8.7e-14 Score=88.09 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
+|+++||+||++||++|+...|.++++.+.+.+. +.++.|+.+. .. ..++ +++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~---~l~~-~~~-------------- 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QP---QIAQ-QFG-------------- 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CH---HHHH-HcC--------------
Confidence 5789999999999999999999999999999764 8888998752 11 2222 322
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
+...|++++++ +|+++..+.|..+.+++.+.|
T Consensus 64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 22223888886 899999888888887777765
No 71
>PRK10996 thioredoxin 2; Provisional
Probab=99.47 E-value=2.4e-13 Score=91.92 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.+++++|+||++||++|+...+.|.++++++.+. +.++.++.+. .. +..+ +++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~~-~~~-------------- 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA--------ER---ELSA-RFR-------------- 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC--------CH---HHHH-hcC--------------
Confidence 5799999999999999999999999999998754 8888887652 11 2222 322
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
|...|+++++ ++|+++..+.|..+.+.+.+.|++++
T Consensus 104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 2222386666 58999999999888888999998764
No 72
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=4.9e-13 Score=89.80 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=69.0
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.++++||.|||+||++|+...|.|.++.+++.+. +.|+-|++|. .. ++.. .+++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~---dla~-~y~I~------------ 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VP---DFNT-MYELY------------ 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CH---HHHH-HcCcc------------
Confidence 5789999999999999999999999999999765 8889999873 22 3332 32221
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCc-EEEEeCC--------CCCchHHHHHHHHHhcC
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ-VVDRYYP--------TTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~-i~~~~~~--------~~~~~~l~~~l~~~l~~ 169 (170)
+. |+++++-++|+ .+.+..| ..+.+++.+.++.++++
T Consensus 77 -------------------~~---~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 77 -------------------DP---CTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred -------------------CC---CcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 11 26666667888 8888877 46777888888887754
No 73
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.46 E-value=3e-13 Score=86.47 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
..+++++|.||++||++|+...|.+.++.+++++. +.+..|+++. . ...++ ++++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~----~~~~~-~~~v------------ 70 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D----RMLCR-SQGV------------ 70 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c----HHHHH-HcCC------------
Confidence 35699999999999999999999999999999765 8999998862 1 12332 3222
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH 161 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~ 161 (170)
...|+++++ ++|+.+..+.|..+.+++.+
T Consensus 71 ----------------------~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 71 ----------------------NSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ----------------------CccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 122376677 78988888888777776654
No 74
>PHA02278 thioredoxin-like protein
Probab=99.45 E-value=6.5e-13 Score=85.09 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.++++||+|||+||++|+...|.+.++.+++... +.++.|++|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd 55 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLD 55 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECC
Confidence 5799999999999999999999999998875433 678888886
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.45 E-value=6.3e-13 Score=84.92 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
+|+ +||.||++||++|+...|.++++.+.++..++.+..++.+. .. . .++ +++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~-~---~~~-~~~-------------- 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP-G---LSG-RFF-------------- 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH-h---HHH-HcC--------------
Confidence 566 68999999999999999999999998876678999988752 11 1 222 322
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
+...|+++++ ++|++ ..+.|..+.+++.+.|+
T Consensus 69 --------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 69 --------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred --------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 2222387776 78986 67888888877777765
No 76
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-12 Score=86.86 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=95.3
Q ss_pred ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
..++.|+++|+|++.+.+.+.++++++.||..++..+ +-..+.|-.+...+++...++.+ +.++.||+|
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D-------- 85 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD-------- 85 (158)
T ss_pred CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence 4578999999999999999999999999987777766 56899999999999999999865 999999997
Q ss_pred ChHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccC--CccCCccccCceeEEECCCCcEEEEe
Q 030881 83 SNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRY 150 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~p~~~lid~~G~i~~~~ 150 (170)
.+-+.++|+.++ ++. -..+ .|.......+.|+..+...| |.. =+ ++|++|.+|+|+|..
T Consensus 86 LPFAq~RfC~ae-Gi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLl---AR---aV~V~De~g~V~y~e 147 (158)
T COG2077 86 LPFAQKRFCGAE-GIENVITL--SDFRDRAFGENYGVLINEGPLAGLL---AR---AVFVLDENGKVTYSE 147 (158)
T ss_pred ChhHHhhhhhhc-CcccceEh--hhhhhhhhhHhhCEEeccccccCee---ee---EEEEEcCCCcEEEEE
Confidence 678999999844 654 3333 33322222222333222222 211 11 789999999999983
No 77
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-12 Score=83.79 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=65.2
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
..+|.+|++|+|+||++|+...|.+.++..+|.+ +.|+.|++| . +...+. .+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~-~~-------------- 70 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAK-EF-------------- 70 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHH-hc--------------
Confidence 3469999999999999999999999999999987 999999986 1 444443 32
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~ 165 (170)
++...||+.++ ++|+.+....|. +.+++++.|.+
T Consensus 71 --------------------~V~~~PTf~f~-k~g~~~~~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 71 --------------------NVKAMPTFVFY-KGGEEVDEVVGA-NKAELEKKIAK 104 (106)
T ss_pred --------------------CceEeeEEEEE-ECCEEEEEEecC-CHHHHHHHHHh
Confidence 22223375555 899999998885 44466666654
No 78
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.42 E-value=1.1e-12 Score=85.05 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=40.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+|++++|.||++||++|+...|.+.++...+++.++.++.|++|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 57999999999999999999999999999998777999999876
No 79
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.42 E-value=8.4e-13 Score=85.51 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=39.4
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.++++||+|||+||++|+...|.|.++.+++.+. +.++.|++|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD 55 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID 55 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC
Confidence 4689999999999999999999999999999765 789999887
No 80
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.41 E-value=2e-12 Score=83.01 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.+++++|.||++||++|+...|.++++.+++.+. +.+..|+.+. . .+.++ +++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~---~~~~~-~~~-------------- 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------Y---ESLCQ-QAN-------------- 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------h---HHHHH-HcC--------------
Confidence 4679999999999999999999999999998654 8899998752 1 22332 322
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC-chHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS-LLSLEHD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~-~~~l~~~ 162 (170)
|...|+++++..+|+.+..+.|..+ .+++.+.
T Consensus 71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 2222388888776688899988776 7666654
No 81
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-12 Score=87.68 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred ccCCcccccceeeC---CCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881 6 IQNPESIFDLSVKD---ARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP 81 (170)
Q Consensus 6 ~~~g~~~p~f~l~~---~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~ 81 (170)
+....++|+|+-.- -.-+.++|++++||++++.|+. .+.-.|..+.-.+++.+.+|++.|.+++++|+|..
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~----- 78 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSV----- 78 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccch-----
Confidence 45566778888543 3447899999999999999994 67779999999999999999999999999999831
Q ss_pred CChHHHHHHHHhhcCCC---CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881 82 GSNDQIADFVCTRFKSE---FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT 154 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~---~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~ 154 (170)
-+--++...-+++.++. +|++ .|.+...... |+.+.. ..|-.+. ..||||++|.++.......
T Consensus 79 fshlAW~ntprk~gGlg~~~iPll--sD~~~~Isrd-yGvL~~----~~G~~lR---glfIId~~gi~R~it~NDl 144 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPLL--SDLNHEISRD-YGVLKE----DEGIALR---GLFIIDPDGILRQITINDL 144 (196)
T ss_pred hhhhhHhcCchhhCCcCcccccee--eccchhhHHh-cCceec----CCCccee---eeEEEccccceEEeeeccc
Confidence 12223333333455554 9999 6666554331 222222 2223444 7899999999999744433
No 82
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.39 E-value=2.5e-12 Score=82.64 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=61.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
++++++|+||++||++|+...|.++++++++++.+ +.+..++.+. .. ..++ ++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~---~~~~-~~------------- 68 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YS---SIAS-EF------------- 68 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CH---hHHh-hc-------------
Confidence 46899999999999999999999999999997543 6677776541 11 1221 21
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
+|...|+++++. +| +...+.|..+.+++.+.+++.
T Consensus 69 ---------------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 69 ---------------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ---------------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 222233888884 45 456678877888888877754
No 83
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.39 E-value=2.5e-12 Score=82.00 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC-cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG-LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
++++++|.||++||+.|+...+.++++.+.+++.+ +.++.++.+. .....+ ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~-~~-------------- 65 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLAS-RF-------------- 65 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHHH-hC--------------
Confidence 68999999999999999999999999999997653 8888877641 122222 22
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
++...|+++++++++. +..+.|..+.+++...|++.
T Consensus 66 --------------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 66 --------------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred --------------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 2223349899998877 67788888888888888764
No 84
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.38 E-value=1.5e-12 Score=83.13 Aligned_cols=83 Identities=24% Similarity=0.349 Sum_probs=60.8
Q ss_pred cEEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
++++|+||++||++|+...|.++++++++++ ..+.++.|+.+. .. ..++ +++
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~~-~~~-------------- 70 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HR---ELCS-EFQ-------------- 70 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Ch---hhHh-hcC--------------
Confidence 3599999999999999999999999999976 358888887652 11 2221 211
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+...|+++++ ++|+.+..+.|..+.+++.+.
T Consensus 71 --------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 71 --------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred --------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 2223388888 688888889888877766554
No 85
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.37 E-value=3.2e-12 Score=83.22 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.++++||.|||+||++|+...|.+.++.+++++. +.++.|+++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW 70 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC
Confidence 5689999999999999999999999999999765 889999876
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.37 E-value=6.8e-12 Score=79.70 Aligned_cols=88 Identities=24% Similarity=0.307 Sum_probs=67.3
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 111 (170)
+++++|+||++||++|+...+.++++.+++.+. +.++.++.+. + . ...+ ++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~-~---~~~~-~~---------------- 64 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------N-P---DIAA-KY---------------- 64 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------C-H---HHHH-Hc----------------
Confidence 579999999999999999999999999988644 9999998752 1 1 1222 22
Q ss_pred chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
++...|+++++ ++|+++..+.|..+.+++.+.|++.+
T Consensus 65 ------------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 65 ------------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred ------------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 22233487888 68999888888888888888887654
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.37 E-value=3.6e-12 Score=82.43 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.|++++|.||++||++|+...|.+.++.+.+++. +.++.|+.+. +...+.+. +++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~---------~~~~~~~~-~~~-------------- 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE---------DKNKPLCG-KYG-------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc---------cccHHHHH-HcC--------------
Confidence 4789999999999999999999999999998754 8899998762 11122332 222
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCC----cEEEEeCCCCCchHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG----QVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G----~i~~~~~~~~~~~~l~~~l 163 (170)
+...|+++++++++ .+...+.|..+.+++.++|
T Consensus 72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 22233889998876 3566788877777777665
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.36 E-value=6.6e-12 Score=79.67 Aligned_cols=85 Identities=9% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.+++++++||++||+.|....+.++++.+++.+ ++.++.|+.+. ..+ ... +++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~--------~~~---l~~-~~~-------------- 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE--------DQE---IAE-AAG-------------- 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC--------CHH---HHH-HCC--------------
Confidence 578999999999999999999999999999875 48888888752 122 221 221
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
+...|+++++. +|+++....|..+.+++.+.|
T Consensus 65 --------------------v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 65 --------------------IMGTPTVQFFK-DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred --------------------CeeccEEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence 22233888884 799999998877777776665
No 89
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.35 E-value=1.2e-12 Score=85.07 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHH---HHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQL---YDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~---~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 107 (170)
.||++|++||++||++|+...+.+... ...+++ ++.++.++++. +......+.. ..+...+.. .
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~--~-- 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVLD-FDGQKNVRL--S-- 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHHS-HTCHSSCHH--H--
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------cccccccccc-cccchhhhH--H--
Confidence 589999999999999999988888754 344433 48888888762 2222333332 111111111 0
Q ss_pred CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
..++... .++...|+++++|++|+++++..|..+++++.+.|
T Consensus 71 ----~~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 ----NKELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ----HHHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ----HHHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 0011111 34666669999999999999999999998887764
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.33 E-value=2.9e-11 Score=79.90 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=64.2
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.|+.++|+|+++|||+|+...|.|.++.++. ++.+..|++|.-...+..+..++.++.+ +++....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~-~~~i~~~---------- 87 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS-RFGIPTS---------- 87 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH-HcCCccc----------
Confidence 4788999999999999999999999999982 3678888876311111122335666654 4433221
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-CCchHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-TSLLSLEHDI 163 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-~~~~~l~~~l 163 (170)
+...|+++++ ++|+.+.+..|. .+.++|++.+
T Consensus 88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 1222386655 689999998774 3455555544
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=1.9e-12 Score=84.93 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+..+||++||+||++||++|+.+.+.+.+..+... .+..++.|++|
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd 60 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLE 60 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEec
Confidence 344578999999999999999999999998766543 23556667665
No 92
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-11 Score=91.34 Aligned_cols=90 Identities=22% Similarity=0.337 Sum_probs=71.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
+.+||||+||++||++|...+|.|.++..+++++ +.+..|++|. .+. +.. .|++
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p~-vAa----qfgi------------- 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EPM-VAA----QFGV------------- 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------chh-HHH----HhCc-------------
Confidence 5579999999999999999999999999999887 9999999873 222 221 3222
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
..|| ++|++ .+|+-+..+.|..+.+.++++|++++.
T Consensus 96 ------------------qsIP---tV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 96 ------------------QSIP---TVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred ------------------CcCC---eEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 2233 87777 689999999998777789999998874
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.30 E-value=8.3e-12 Score=80.74 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-----CcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-----GLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~v~~v~is~d 74 (170)
.+++++|+||++||++|+...|.++++.+.+++. .+.+..|++|
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d 65 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD 65 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence 4689999999999999999999999999887532 3788888876
No 94
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.29 E-value=2.6e-11 Score=77.27 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
.++++||+|+++||++|....|.++++.+++.+ ++.++.|+.+. . ...++ ++++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~~-~~~v------------- 69 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELCK-KYGV------------- 69 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHHH-HTTC-------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhhh-ccCC-------------
Confidence 369999999999999999999999999999987 69999998752 1 33333 4332
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~ 165 (170)
...|+++++ ++|+....+.|..+.+++.+.|++
T Consensus 70 ---------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 70 ---------------------KSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ---------------------SSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ---------------------CCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 222376666 578888899998899999999876
No 95
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.29 E-value=1.4e-11 Score=78.86 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
++++++|.||++||++|+...+.++++.+.+++. .+.++.++.+. ++.....+ +++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~~-~~~------------- 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK---------PEHDALKE-EYN------------- 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC---------CccHHHHH-hCC-------------
Confidence 5779999999999999999999999999998743 37777777641 11122222 222
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+...|+++ +.++|+++..+.|..+.+.+.+.
T Consensus 73 ---------------------i~~~Pt~~-~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 73 ---------------------VKGFPTFK-YFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred ---------------------CccccEEE-EEeCCCeeEEeCCCCCHHHHHhh
Confidence 22223754 44689988899888887776654
No 96
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.29 E-value=2.7e-11 Score=87.71 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=66.5
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 111 (170)
+++++|+||++||++|+...|.++++.+++++. +.+..++.+. . .+.++ +++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~-------~----~~l~~-~~~--------------- 103 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR-------A----LNLAK-RFA--------------- 103 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc-------c----HHHHH-HcC---------------
Confidence 589999999999999999999999999999764 7777776541 1 12222 322
Q ss_pred chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
|...|++++++ +|+++..+.|..+.+++.+.+.+.++
T Consensus 104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 22233888887 78888877787888888888877653
No 97
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.26 E-value=5.3e-11 Score=75.27 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=36.8
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++|+||++||++|+...+.|.++.+++ ..++.++.++.+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc
Confidence 699999999999999999999999999997 335888888653
No 98
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.25 E-value=4e-11 Score=97.99 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
.+||+++|+||++||++|+.+.+.+ .++.++++ ++.++.++++. +.++..+..+ +++
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~~-~~~---------- 531 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALLK-HYN---------- 531 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHHH-HcC----------
Confidence 3589999999999999999987764 56777775 48888888753 2223334443 322
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE--EEeCCCCCchHHHHHHHHHh
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--DRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~--~~~~~~~~~~~l~~~l~~~l 167 (170)
+...|+++++|++|+++ .++.|..+++++.+.|+++.
T Consensus 532 ------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 ------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 22223999999999984 67788889999999998753
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.23 E-value=4.1e-11 Score=76.71 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
.++++++.||++||++|+...+.+.++.+.++. .++.++.++.+. . ..+.++ +++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~~-~~~------------- 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLAK-KYG------------- 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhHH-hCC-------------
Confidence 357999999999999999999999999999973 358888887652 0 122232 222
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+...|++++++++|+....+.|..+.+++.+.
T Consensus 73 ---------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 73 ---------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred ---------------------CCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 12223889998887777778887777666654
No 100
>PTZ00051 thioredoxin; Provisional
Probab=99.23 E-value=9.2e-11 Score=74.35 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=37.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+++++|+||++||++|+...+.+.++.+++.+ +.++.|+.+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence 478999999999999999999999999998754 888888764
No 101
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.22 E-value=2.2e-10 Score=73.87 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+|++||.|+++||++|+...|.|.++..++++. +.|+.|++|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5899999999999999999999999999999654 899999886
No 102
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.20 E-value=1.9e-10 Score=73.43 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH 111 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 111 (170)
+++++|.||++||++|+...|.+.++.+++.+. +.++.++.+. . .+.++ +++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~---~~~~~-~~~--------------- 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------H---QSLAQ-QYG--------------- 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------h---HHHHH-HCC---------------
Confidence 567999999999999999999999999998754 8888887651 1 12222 322
Q ss_pred chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
+...|++++++++......+.|..+.+++.+++
T Consensus 70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -------------------CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 222238888876546666677877777776553
No 103
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.20 E-value=3.9e-10 Score=73.54 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE 110 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 110 (170)
+++.++|+||++||++|+...+.+.++.+++. .+.+..|+.|. .+ +... +
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~-------~~----~l~~-~---------------- 70 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE-------DK----EKAE-K---------------- 70 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc-------CH----HHHH-H----------------
Confidence 45678999999999999999999999998873 38888888762 11 1221 2
Q ss_pred CchhHHHHhHhccCCccCCccccCceeEEECCC---CcEEEEeCCCCCchHHHHHHHHHhcCC
Q 030881 111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN---GQVVDRYYPTTSLLSLEHDIKKLLGLS 170 (170)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~---G~i~~~~~~~~~~~~l~~~l~~~l~~~ 170 (170)
+++...|++++.+.+ |.+ ++.|..+..++.+.|+.++..|
T Consensus 71 ------------------~~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~~~ 113 (113)
T cd02975 71 ------------------YGVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVRVS 113 (113)
T ss_pred ------------------cCCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHhcC
Confidence 123333487777643 333 4667777788999999988654
No 104
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.20 E-value=8.9e-11 Score=80.21 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=40.8
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++||+||++||++|+...|.++++.+++.+.++.++.|++|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 46799999999999999999999999999998767999999987
No 105
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.20 E-value=1.1e-10 Score=73.81 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
++++++|.||++||++|....+.+.++.+.++ ..++.++.++.+. ....++ +++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~-~~~------------- 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLCS-EYG------------- 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHHH-hCC-------------
Confidence 45699999999999999999999999999985 4458999987641 223332 322
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD 162 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~ 162 (170)
+...|++++++++|+....+.|..+.+++.+.
T Consensus 69 ---------------------i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 69 ---------------------VRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred ---------------------CCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 22234889999887777778777766666543
No 106
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.18 E-value=4.2e-10 Score=73.89 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=65.3
Q ss_pred CcEEEEEEecCCCCC--Ch--hhHHHHHHHHHHh-ccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 32 GKVLLIVNVASKCGM--TN--SNYIELSQLYDKY-KDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 32 gk~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~-~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
..++|++||+.||++ |+ ...|.+.++..++ ++.++.++.|++|. .. +.++ ++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~~---~La~-~~~I--------- 85 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------DA---KVAK-KLGL--------- 85 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------CH---HHHH-HcCC---------
Confidence 469999999999988 99 7778888888887 23459999999872 12 2222 4332
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
.++ ||++++ +||+++. +.|..+.+.+.+.|++++
T Consensus 86 ----------------------~~i---PTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 ----------------------DEE---DSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ----------------------ccc---cEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 122 276666 5899887 889889999999999876
No 107
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.17 E-value=1.6e-10 Score=83.13 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=99.5
Q ss_pred ccccCCcccccceeeCCCCCe-ecCCCC-C-CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC-----
Q 030881 4 QFIQNPESIFDLSVKDARGHE-VDLSTY-K-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ----- 75 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~~~g~~-~~l~~~-~-gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~----- 75 (170)
+.+..|..|||..+.+.+|.. .++-|+ + ++|+||+|.+-.||+-+..+..++++.++|.+. +.++.|=+..
T Consensus 71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsD 149 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSD 149 (237)
T ss_pred cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCC
Confidence 346689999999999999988 999998 3 599999999988999999999999999999875 4555552210
Q ss_pred --------CCCCCCCChH---HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC
Q 030881 76 --------FGEEEPGSND---QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG 144 (170)
Q Consensus 76 --------~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G 144 (170)
+.-..+.+.+ ..++.+. +....+|++ .|.........|+ +.| + +.|||. +|
T Consensus 150 gW~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~~pi~--vD~mdN~~~~~Yg----A~P---------e-RlyIi~-~g 211 (237)
T PF00837_consen 150 GWAFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQCPIV--VDTMDNNFNKAYG----ALP---------E-RLYIIQ-DG 211 (237)
T ss_pred CccCCCCceeecCCCCHHHHHHHHHHHH-hhCCCCCEE--EEccCCHHHHHhC----CCc---------c-eEEEEE-CC
Confidence 1111233333 3344444 334678888 6766555544333 222 1 668885 99
Q ss_pred cEEEEeC-C--CCCchHHHHHHHH
Q 030881 145 QVVDRYY-P--TTSLLSLEHDIKK 165 (170)
Q Consensus 145 ~i~~~~~-~--~~~~~~l~~~l~~ 165 (170)
+|+|... | ...++++++.|++
T Consensus 212 kv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 212 KVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred EEEEeCCCCCCcCCHHHHHHHHHh
Confidence 9999932 2 2366778888875
No 108
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.16 E-value=6.3e-10 Score=73.51 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=32.8
Q ss_pred CCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881 29 TYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 29 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d 74 (170)
.-.||+++|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.++.+
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 34689999999999999999887633 245555433 3777777654
No 109
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.12 E-value=4.9e-10 Score=73.06 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=37.2
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++|+||++||++|+...|.++++.+++.+ +.++.|+.+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 58999999999999999999999999999864 888888764
No 110
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.12 E-value=4.3e-10 Score=89.17 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++||+||++||++|+.+.|.+.++.+++++.++.|+.|++|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 67899999999999999999999999999998878999999886
No 111
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.11 E-value=2.7e-10 Score=72.77 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d 74 (170)
.+++++|+||++||++|+...+.+.++.+.+++ ..+.+..|+.+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 368999999999999999999999999999977 35888888764
No 112
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.3e-10 Score=80.06 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
++...+|.++|.|.++||+||....|.++.+..+|++ ..|+-|++| +....++ .
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~taa-~------------ 69 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTAA-T------------ 69 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchhh-h------------
Confidence 4445679999999999999999999999999999954 899999775 3344333 2
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
.+|...|| |+.-+||+-+..+.| .++..|++.+++.+..
T Consensus 70 ----------------------~gV~amPT-Fiff~ng~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 70 ----------------------NGVNAMPT-FIFFRNGVKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred ----------------------cCcccCce-EEEEecCeEeeeecC-CCHHHHHHHHHHHhcc
Confidence 12222336 666689998998877 5777899999887653
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=99.09 E-value=3.1e-10 Score=91.12 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=75.6
Q ss_pred eeCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881 17 VKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (170)
Q Consensus 17 l~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
+..+.|..+.-. .-.|+.++|+||++||++|+...|.++++.+.+++. .+.+..++.+. +. . .+. +
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~-~---~~~-~ 426 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE-T---PLE-E 426 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc-c---chh-c
Confidence 444556555432 235899999999999999999999999999998764 37777777642 10 0 010 1
Q ss_pred cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
..+...|+++++++++++...+.|..+.+.+.+.|++.+.
T Consensus 427 ----------------------------------~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 427 ----------------------------------FSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ----------------------------------CCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 1122223999999888877778898999999999988764
No 114
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.07 E-value=1.6e-09 Score=70.62 Aligned_cols=42 Identities=7% Similarity=-0.069 Sum_probs=38.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+++++|+||++||++|+...|.+.++.+++.+ +.++.|+.+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 468999999999999999999999999999864 899999876
No 115
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.06 E-value=4.2e-09 Score=64.41 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.|..||++||++|....+.++++.++++.. +.++.|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence 467899999999999999999999998654 888888765
No 116
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.06 E-value=1.2e-09 Score=71.28 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d 74 (170)
+++++|.||++||++|+...+.++++.+.+++. .+.+..++.+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999988653 2777777653
No 117
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.05 E-value=4.1e-09 Score=68.76 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881 29 TYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 105 (170)
Q Consensus 29 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 105 (170)
.-++|+++|+|.++||++|......+ .++.+.+++ ...++.++.+ + .+..++.. .++
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~~-~~~--------- 73 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFLQ-SYK--------- 73 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHHH-HhC---------
Confidence 34689999999999999999876543 234444443 3555555443 1 22334433 211
Q ss_pred ecCCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
. ..+ |++++||+ +|+++.+..|..+++++...|++++..
T Consensus 74 --------------~--------~~~---P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 74 --------------V--------DKY---PHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred --------------c--------cCC---CeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 1 122 38899999 899999999999999999999988753
No 118
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.05 E-value=2.1e-09 Score=66.53 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++|+||++||++|....+.++++.+. ..++.++.++.+
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~ 50 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD 50 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC
Confidence 38999999999999999999999999988 345999999875
No 119
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.05 E-value=8.2e-10 Score=72.32 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=39.5
Q ss_pred CCcEEEEEEec-------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+|++++|+||| +||++|+...|.++++.+++++ ++.++.|+++
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd 69 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVG 69 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcC
Confidence 58999999999 9999999999999999999974 3999999986
No 120
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.03 E-value=3.2e-09 Score=68.42 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCC--CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASK--CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
.|.++||.||++| ||+|....|.|.++.+++.+. +.++.|+.|+ .+ ++.. +|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~la~----~f~------------ 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-ALAA----RFG------------ 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HHHH----HcC------------
Confidence 6789999999997 999999999999999999766 8888998863 22 2222 322
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE 160 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~ 160 (170)
|...||++++ ++|+++....|..+.+++.
T Consensus 81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 2222375555 6899999998877776654
No 121
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.02 E-value=3.5e-09 Score=74.21 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
++++||+||++||++|....|.|.++..++.. +.|+.|+.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999864 999999875
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=99.02 E-value=2.2e-09 Score=85.08 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++++||.||++||++|+.+.|.+.++.+++...++.|+.|+.|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 68999999999999999999999999999998878999999875
No 123
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.99 E-value=4.7e-09 Score=74.56 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++|||+||++||++|....+.|++++.+|.. +.|+.|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 46999999999999999999999999999964 999999763
No 124
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.97 E-value=2.1e-09 Score=85.82 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|+++. . .+.++ ++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~~-~~~i----------- 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLAQ-KYGV----------- 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHHH-hCCC-----------
Confidence 57899999999999999999999999999987665 8888888752 1 22332 3222
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhc
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
...|+++++ ++|+. +..+.|..+.+.+.+.+.+.+.
T Consensus 74 -----------------------~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 74 -----------------------SGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred -----------------------ccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 222376666 46776 6778888888889888887764
No 125
>PTZ00102 disulphide isomerase; Provisional
Probab=98.93 E-value=3.9e-09 Score=84.82 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
+++.++|.||++||++|+...|.+.++...+++. ++.+..|+++. . .+.++ ++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~----~~l~~-~~~i----------- 104 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------E----MELAQ-EFGV----------- 104 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------C----HHHHH-hcCC-----------
Confidence 5789999999999999999999999999888654 37788887641 1 12232 3222
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
...|+++++...+ .+ .+.|..+.+.+.+.|++++.
T Consensus 105 -----------------------~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 105 -----------------------RGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred -----------------------CcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhhC
Confidence 2223878887544 44 77888899999999988764
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=98.84 E-value=2.9e-08 Score=70.93 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=58.4
Q ss_pred cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCc
Q 030881 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHA 112 (170)
Q Consensus 33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 112 (170)
..+|++||++||++|+...+.|.++.+++.+ +.|+.|+.| +++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d--------------------~~V--------------- 60 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA--------------------DAN--------------- 60 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------cCc---------------
Confidence 6789999999999999999999999999965 889888531 111
Q ss_pred hhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 113 SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
..+| +++++ ++|+++.+..|. ++.++...+.++.
T Consensus 61 ----------------~~vP---tfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 61 ----------------NEYG---VFEFY-QNSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred ----------------ccce---EEEEE-ECCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 1333 75555 689999998874 5666777766554
No 127
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.78 E-value=7.6e-08 Score=61.33 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=39.4
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.|+++++.|+++||++|....+.+.++.++++++ +.++.|+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 3789999999999999999999999999999866 999999765
No 128
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.77 E-value=3e-08 Score=71.65 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
+.++.+++-|++|+.+.|++|..+.|.|+.+.+++ |+.++.||+|.- ....||... .
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~------------------~~~~fp~~~--~ 171 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR------------------PIPSFPNPR--P 171 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC------------------CCcCCCCCC--C
Confidence 44557889999999999999999999999999996 699999999831 011222210 0
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-cEEEEeCCCCCchHHHHHH
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-~i~~~~~~~~~~~~l~~~l 163 (170)
+ ...+-. .++...|++||+++++ ++.....|..+.++|.+.|
T Consensus 172 -~---~g~~~~-----------l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 172 -D---PGQAKR-----------LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred -C---HHHHHH-----------cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 0 000001 2344556999999988 6666678888888877654
No 129
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.77 E-value=9.2e-08 Score=57.82 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=30.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
.|.||++||++|....|.++++.+++... +.++-|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998644 6776663
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.76 E-value=4.1e-08 Score=72.34 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
+.++.+++-|++|+.+.|++|..+.|.++.+.+++ |+.++.||+|. .....||... .|
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~~-~d 202 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNSR-SD 202 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCcc-CC
Confidence 44556789999999999999999999999999995 59999999983 1111233221 01
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
...+.. .++...|++||++++ +++.-...|..+.++|.+.|..++.
T Consensus 203 -----~gqa~~-----------l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 203 -----SGQAQH-----------LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred -----hHHHHh-----------cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 000001 234455699999999 6666668899999999998877653
No 131
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.73 E-value=5.6e-08 Score=71.27 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
+.++.+++-|++|+.+.|++|..+.|.|+.+.+++ |+.++.||+|.- ....||... .|
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~------------------~~p~fp~~~-~d 195 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV------------------INPLLPDSR-TD 195 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC------------------CCCCCCCCc-cC
Confidence 44556789999999999999999999999999995 699999999841 111233220 01
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-cEEEEeCCCCCchHHHHHHHHHhc
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
. ..+ -. .++...|++||++++. ++.-...|..+.++|.+.|..++.
T Consensus 196 ~--gqa---~~-----------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 196 Q--GQA---QR-----------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred h--hHH---Hh-----------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 0 000 01 2455566999999985 777778899999999998887654
No 132
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=1.4e-07 Score=62.60 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHH
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIEL 54 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l 54 (170)
-.||+++|+|++.||++|+..-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3689999999999999999987765
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.70 E-value=1.4e-07 Score=68.34 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=60.5
Q ss_pred CCCCcEEEEEEec---CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881 29 TYKGKVLLIVNVA---SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 105 (170)
Q Consensus 29 ~~~gk~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 105 (170)
..++...++.|.+ +||++|....|.+.++.+++.+ +.+..+++|. ++..+.++ +++
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~~-~~~--------- 74 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEAE-KYG--------- 74 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHHH-HcC---------
Confidence 3455555666777 9999999999999999999853 5555555541 11122222 322
Q ss_pred ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE-EEeCCCCCchHHHHHHHHHh
Q 030881 106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV-DRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~-~~~~~~~~~~~l~~~l~~~l 167 (170)
|...||+++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus 75 -------------------------V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 75 -------------------------VERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred -------------------------CCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 22233866665 57776 47888778888888888775
No 134
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.4e-08 Score=75.96 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=66.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
....++|.|||+||++|....|++.+....+++. .+.+..|... . . ...+. ++++
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---------~-~-~~~~~-~y~v----------- 97 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---------E-E-SDLAS-KYEV----------- 97 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---------h-h-hhhHh-hhcC-----------
Confidence 4579999999999999999999999999999987 4677777532 1 2 44443 4332
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
+..|| .-|.+||+....|.|....+.+..+|++..
T Consensus 98 -----------------------~gyPT-lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 98 -----------------------RGYPT-LKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred -----------------------CCCCe-EEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 22224 456688998777888888888888887653
No 135
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.64 E-value=2.4e-07 Score=74.05 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
.++.+||+||++||++|....|.+.++.+.+++. ++.++.++++. + + +. .+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n--~----~~-----~~~-------- 416 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N--D----VP-----PFE-------- 416 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C--c----cC-----CCC--------
Confidence 4799999999999999999999999999999872 58888887642 1 0 00 000
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhc
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
. ..+ |+++++.+.++. ...+.|..+.+.+.+.|.+..+
T Consensus 417 -----------i--------~~~---Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 417 -----------V--------EGF---PTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred -----------c--------ccc---CEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 1 123 388898766652 3456777888888888887654
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.58 E-value=6.5e-07 Score=64.84 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=33.2
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
..+..+|+.||++||++|....+.++++..+.. .+.+..++.+
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 345566777999999999999998888888753 3777777654
No 137
>smart00594 UAS UAS domain.
Probab=98.49 E-value=1.2e-06 Score=57.81 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=58.5
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 106 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 106 (170)
-.+|+++|+|.+.||++|......+ .++.+.+++ ++.++.+++. +.+. .+.+. .++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~eg-~~l~~-~~~~--------- 84 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSEG-QRVSQ-FYKL--------- 84 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------ChhH-HHHHH-hcCc---------
Confidence 3689999999999999999987654 234444433 4666666553 2222 23332 3221
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-----cEEEEeCCCCCchHHHHHH
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-----QVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-----~i~~~~~~~~~~~~l~~~l 163 (170)
.+. |++.+++++| .++.+..|..+++++.+.|
T Consensus 85 ----------------------~~~---P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 ----------------------DSF---PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ----------------------CCC---CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 112 2889999998 5777788888988887765
No 138
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.47 E-value=4.3e-07 Score=58.17 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=41.8
Q ss_pred ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.....++++++++.||++||++|....|.+.++.+++.. .+.++.++..
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344445589999999999999999999999999999976 5888888863
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.46 E-value=2.5e-06 Score=53.15 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=39.0
Q ss_pred CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+.++++...+..|+++||++|....+.++++.+.+.+ +.+..++.+
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 3467788899999999999999999999999988754 888888764
No 140
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.38 E-value=1.6e-06 Score=53.08 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d 74 (170)
.||+++|+|+++||++|...-..+ .++.+.+. +++.++.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 689999999999999999988777 24444344 44888888764
No 141
>PHA02125 thioredoxin-like protein
Probab=98.38 E-value=3.3e-06 Score=50.79 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=24.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
++.|+++||++|+...|.|.++. +.++.|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~ 33 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD 33 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC
Confidence 78999999999999999886542 445666543
No 142
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.34 E-value=5.8e-06 Score=59.51 Aligned_cols=116 Identities=13% Similarity=0.214 Sum_probs=77.9
Q ss_pred cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC---cEEEEeecCCCCCCCCCChHH
Q 030881 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQ 86 (170)
Q Consensus 10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---v~~v~is~d~~~~~~~~~~~~ 86 (170)
.+.|.+++- ....+.+..|+++||-+...+|..|..++..|..|..++.+.| |.++.|+.-. .....
T Consensus 8 ~~~p~W~i~----~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~------~~s~~ 77 (238)
T PF04592_consen 8 KPPPPWKIG----GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG------EHSRL 77 (238)
T ss_pred CCCCCceEC----CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC------cchhH
Confidence 345555543 3445788899999999999999999999999999999998775 7888887421 12222
Q ss_pred HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881 87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (170)
Q Consensus 87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~ 150 (170)
+...++.+....+|++- +......+|..+..... -++|+|+-|++.+..
T Consensus 78 ~~~~l~~r~~~~ipVyq----q~~~q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 78 KYWELKRRVSEHIPVYQ----QDENQPDVWELLNGSKD-----------DFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHHHHHhCCCCCceec----CCccccCHHHHhCCCcC-----------cEEEEeccCcEEEEe
Confidence 22344445555688872 11222334444332222 559999999999984
No 143
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.34 E-value=3.1e-07 Score=61.16 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=47.5
Q ss_pred CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (170)
Q Consensus 28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 107 (170)
.....+..++.|..+|||.|....|.|.++.+..+. +.+=-++.| +-.+... ++ ..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~~-~~----lt------ 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELMD-QY----LT------ 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHTT-TT----TT------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHHH-HH----Hh------
Confidence 344567899999999999999999999999999654 555555332 2223222 11 00
Q ss_pred CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
. .. ..|| +++++|.+|+.+.++.+ .|+.+.+.+.
T Consensus 93 ~----------g~--------~~IP---~~I~~d~~~~~lg~wge--rP~~~~~~~~ 126 (129)
T PF14595_consen 93 N----------GG--------RSIP---TFIFLDKDGKELGRWGE--RPKEVQELVD 126 (129)
T ss_dssp -----------SS----------SS---EEEEE-TT--EEEEEES--S-HHHH----
T ss_pred C----------CC--------eecC---EEEEEcCCCCEeEEEcC--CCHHHhhccc
Confidence 0 00 2344 99999999999988754 4455554443
No 144
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.33 E-value=1.5e-06 Score=70.04 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 109 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 109 (170)
++|+|+|+|+|.||-.|+..-+.. ++.+..++-.+++.+-.+.- .+..+..+..+ +++.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lLk-~~~~------------ 532 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALLK-RLGV------------ 532 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHHH-HcCC------------
Confidence 556999999999999999886654 45566666667888888763 24556666665 4322
Q ss_pred CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
.++| ++++++++|.-.....|..+.+.+++.|++.
T Consensus 533 -------------------~G~P---~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 533 -------------------FGVP---TYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -------------------CCCC---EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 2344 8899999998777788888999999998875
No 145
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3e-05 Score=61.00 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.++..+|.|+++||++|.+..|.+.++...+++. +.+..|..
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~ 87 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDC 87 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCc
Confidence 5689999999999999999999999999999773 66666654
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.11 E-value=1.3e-05 Score=46.93 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=31.7
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
-|..|+++||++|....+.++++.+... ++.+..++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4678999999999999999999977653 4888888765
No 147
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.11 E-value=8.5e-05 Score=52.90 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=79.9
Q ss_pred cceeeCCCCCeecCCCC-CCc--EEEEEEe-----cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881 14 DLSVKDARGHEVDLSTY-KGK--VLLIVNV-----ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND 85 (170)
Q Consensus 14 ~f~l~~~~g~~~~l~~~-~gk--~~lv~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~ 85 (170)
+..+...+|. ++|.++ .|+ .+|..|. ..-|+.|...+..+......+.++++.++.||-. ..+
T Consensus 48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra--------P~~ 118 (211)
T PF05988_consen 48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA--------PLE 118 (211)
T ss_pred CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC--------CHH
Confidence 4566666776 888885 664 5555555 3459999999999988888898899999999864 678
Q ss_pred HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
++..|.+ ++|-++|+++..+..-. ++|.....++ ...|.. ++|+-|. |+|...|..
T Consensus 119 ~i~afk~-rmGW~~pw~Ss~gs~Fn-----~D~~~~~~~~---~~~~g~-svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 119 KIEAFKR-RMGWTFPWYSSYGSDFN-----YDFGVSFDEG---GEMPGL-SVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHH-hcCCCceEEEcCCCccc-----ccccceeccC---CCceeE-EEEEEcC-CEEEEEeec
Confidence 9999987 88999999964432211 1121111110 122222 6666665 888777643
No 148
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.09 E-value=8.9e-06 Score=60.66 Aligned_cols=89 Identities=22% Similarity=0.375 Sum_probs=62.2
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccC----CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC-CCCceEEee
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ----GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPIFEKID 106 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~----~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~d 106 (170)
...++|.|+|.||+.++...|.+.+..+.++++ .+.+-.|++| ....+++ +|.+ .||.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~e~~ia~----ky~I~KyPTl---- 76 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------KEDDIAD----KYHINKYPTL---- 76 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------hhhHHhh----hhccccCcee----
Confidence 679999999999999999999999877666543 3555556554 2233332 4333 24443
Q ss_pred cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhc
Q 030881 107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~ 168 (170)
=|-+||.+..+ |.|..+.+.+.+.|++.++
T Consensus 77 --------------------------------KvfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 77 --------------------------------KVFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred --------------------------------eeeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 22357887774 8888888889999888765
No 149
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.00 E-value=8.7e-05 Score=43.73 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+..|+++||++|....+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 567889999999998776654 46888888775
No 150
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.99 E-value=3.8e-05 Score=43.31 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=32.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~ 75 (170)
|+.||++||++|....+.++++ +....++.++.++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999998 4455679999999863
No 151
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.93 E-value=0.0013 Score=44.91 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=88.3
Q ss_pred cCCcccccceeeCC-----CCCee-----cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHH-hccCCcEEEEe-ecC
Q 030881 7 QNPESIFDLSVKDA-----RGHEV-----DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK-YKDQGLEILAF-PCN 74 (170)
Q Consensus 7 ~~g~~~p~f~l~~~-----~g~~~-----~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~v~~v~i-s~d 74 (170)
..|.++|..++.|. +|..+ +..++.||+.+|...|-.-..-....|-+..+.+. |+....+..+| +.|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 46788898887653 34444 55557899999999976655555566777777766 55555666655 333
Q ss_pred CCCCCCCCChHHHHHHHHhhcCCCCCceE-EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881 75 QFGEEEPGSNDQIADFVCTRFKSEFPIFE-KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT 153 (170)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~ 153 (170)
+ .-..+..=++..++ ...-.||+-. ..|.++.. ...|+. ++. +-.++++|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~e-~~kk~~p~s~~vlD~~G~~-~~aW~L-----~~~-------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSAE-DSKKEFPWSQFVLDSNGVV-RKAWQL-----QEE-------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHHH-HhhhhCCCcEEEEcCCCce-eccccC-----CCC-------CceEEEEcCCccEEEEECCC
Confidence 1 11233333444443 3343455421 26766653 223331 111 11789999999999999999
Q ss_pred CCchHHHHHHHH
Q 030881 154 TSLLSLEHDIKK 165 (170)
Q Consensus 154 ~~~~~l~~~l~~ 165 (170)
++++++.+.|.-
T Consensus 145 Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 145 LSPAEVQQVIAL 156 (160)
T ss_pred CCHHHHHHHHHH
Confidence 999998887753
No 152
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.9e-05 Score=50.34 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=81.3
Q ss_pred ccCCcccccceeeCCCC-------CeecCCCC-CCc-EEEEEEecCCCCCChh-hHHHHHHHHHHhccCCc-EEEEeecC
Q 030881 6 IQNPESIFDLSVKDARG-------HEVDLSTY-KGK-VLLIVNVASKCGMTNS-NYIELSQLYDKYKDQGL-EILAFPCN 74 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g-------~~~~l~~~-~gk-~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~v-~~v~is~d 74 (170)
...|+++|..++....+ ..++.+++ +|| ++|+..-+.+.|.|.. .+|.+.+++++++++|| .++-||++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 56899999999887632 23555564 775 5555556889999997 79999999999999986 44555654
Q ss_pred CCCCCCCCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 75 QFGEEEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+.-.+..|.+ ..+.. ..++ .|-++.-.+.+ +++..... .|.++..+ ++-.+=.||.|.+.+..
T Consensus 83 --------D~FVm~AWak-~~g~~~~I~fi--~Dg~geFTk~~-Gm~~d~~~--~g~G~RS~-RYsmvV~nGvV~~~~iE 147 (165)
T COG0678 83 --------DAFVMNAWAK-SQGGEGNIKFI--PDGNGEFTKAM-GMLVDKSD--LGFGVRSW-RYSMVVENGVVEKLFIE 147 (165)
T ss_pred --------cHHHHHHHHH-hcCCCccEEEe--cCCCchhhhhc-Cceeeccc--CCcceeee-eEEEEEeCCeEEEEEec
Confidence 5667777776 33433 3344 55444432211 11111111 11334444 44444468998887644
No 153
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.85 E-value=0.00025 Score=46.35 Aligned_cols=92 Identities=10% Similarity=0.093 Sum_probs=61.2
Q ss_pred CCCCcEEEEEEecC----CCCCChhhH--HHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC-CCCc
Q 030881 29 TYKGKVLLIVNVAS----KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPI 101 (170)
Q Consensus 29 ~~~gk~~lv~f~~~----~C~~C~~~~--~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ 101 (170)
.-.+|+++|+++++ ||..|+..+ +.+.++.++ ++.+.+.++. +.+ -.+... .++. +||
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~----~fv~w~~dv~--------~~e-g~~la~-~l~~~~~P- 78 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT----RMLFWACSVA--------KPE-GYRVSQ-ALRERTYP- 78 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc----CEEEEEEecC--------ChH-HHHHHH-HhCCCCCC-
Confidence 34679999999998 777887654 555555542 3666666654 222 122221 2111 233
Q ss_pred eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEE---CCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLV---DKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~li---d~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
++.+| +.+.+++.+..|..+++++...|+.++.+
T Consensus 79 ----------------------------------~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 79 ----------------------------------FLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ----------------------------------EEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 55677 66778899999999999999999988764
No 154
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.85 E-value=0.00016 Score=43.16 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+..||++||++|+...+.|.++ ++.+-.++++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5789999999999988776543 4555566665
No 155
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.8e-05 Score=63.23 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~ 73 (170)
.+|-+||.|+|+||++|....|.+++|.+.+++. ++.+.-+..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA 426 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence 5799999999999999999999999999999986 566666643
No 156
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.83 E-value=8.1e-05 Score=48.50 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=31.2
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQ 75 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~ 75 (170)
+.+.+||.|+++| |.|-+ .|+..++..++... .+.+..|.+++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d 61 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD 61 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence 5689999999966 55555 48888888777432 37788887753
No 157
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.73 E-value=0.00054 Score=47.23 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=40.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHH-HH--HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIE-LS--QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV 107 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~-l~--~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 107 (170)
.+|+++|++.++||..|+.+..+ ++ ++.+.+++. ||.|-+|. +...++..... .+
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDr------ee~Pdid~~y~-~~------------ 93 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDR------EERPDIDKIYM-NA------------ 93 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEET------TT-HHHHHHHH-HH------------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEecc------ccCccHHHHHH-HH------------
Confidence 58999999999999999987642 22 233333322 44554442 24445544432 10
Q ss_pred CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881 108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY 150 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~ 150 (170)
....... + .+|++++++|+|+..+..
T Consensus 94 ---------~~~~~~~-----g---GwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 94 ---------VQAMSGS-----G---GWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ---------HHHHHS-----------SSEEEEE-TTS-EEEEE
T ss_pred ---------HHHhcCC-----C---CCCceEEECCCCCeeeee
Confidence 0011111 1 234999999999999973
No 158
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.61 E-value=0.00083 Score=49.79 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=72.7
Q ss_pred CcccccceeeCCCCCeecCCC-CCCcEEEEEEecC-CCCCChhhH--HHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881 9 PESIFDLSVKDARGHEVDLST-YKGKVLLIVNVAS-KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84 (170)
Q Consensus 9 g~~~p~f~l~~~~g~~~~l~~-~~gk~~lv~f~~~-~C~~C~~~~--~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~ 84 (170)
-.-+|+|...++.|+.+++.+ ++||+.||..+.+ |-..|...- |...++...-.+ .++++-|++.+
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~-~~q~v~In~~e--------- 167 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYG-RVQIVEINLIE--------- 167 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCC-ceEEEEEecch---------
Confidence 346799999999999988888 5999888888754 433333221 223333222111 59999998741
Q ss_pred HHHHHHHHh----hcCCCCC-----ceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881 85 DQIADFVCT----RFKSEFP-----IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS 155 (170)
Q Consensus 85 ~~~~~~~~~----~~~~~~p-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~ 155 (170)
.-++.++.. ...-..| .+.... .+.....+.. .+. -.=+....+||||++|+|++...|..+
T Consensus 168 ~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~-~~~~~~~iRe----~Lg----i~N~~~GYvyLVD~~grIRWagsG~At 238 (252)
T PF05176_consen 168 NWLKSWLVKLFMGSLRKSIPEERHDRYFIVY-RGQLSDDIRE----ALG----INNSYVGYVYLVDPNGRIRWAGSGPAT 238 (252)
T ss_pred HHHHHHHHHHHhhhhhccCCHHHCceEEEEe-CCcccHHHHH----HhC----CCCCCcCeEEEECCCCeEEeCccCCCC
Confidence 222233221 1111111 111011 1100111101 110 000011177999999999999999888
Q ss_pred chHHHHHH
Q 030881 156 LLSLEHDI 163 (170)
Q Consensus 156 ~~~l~~~l 163 (170)
+++++...
T Consensus 239 ~~E~~~L~ 246 (252)
T PF05176_consen 239 PEELESLW 246 (252)
T ss_pred HHHHHHHH
Confidence 88866544
No 159
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.60 E-value=0.00018 Score=43.71 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=32.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
|+.|+++|||+|....+.|.++. .+. .+.++-|+.+ .+..++.+++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~ 47 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLE 47 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHH
Confidence 46788999999999999998876 221 2677777654 24455555554
No 160
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0022 Score=43.63 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=66.1
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEE-e
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK-I 105 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~ 105 (170)
-.+|+.++.|-...|++|...-..+ .++++.+.++ +.++.+..... . |+... .
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~s-------k---------------pv~f~~g 96 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYS-------K---------------PVLFKVG 96 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccC-------c---------------ceEeecC
Confidence 3689999999999999999876555 4566666555 77777765310 0 11100 0
Q ss_pred ec-CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881 106 DV-NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165 (170)
Q Consensus 106 d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~ 165 (170)
+. .....+++.+- ..+...|++++.|.+|+-+....|..+++++...++-
T Consensus 97 ~kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 97 DKEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred ceeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 11 00011122111 3455556999999999999999999999987776653
No 161
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=3.5e-05 Score=62.00 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=48.1
Q ss_pred cEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC-CCceE
Q 030881 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE-FPIFE 103 (170)
Q Consensus 33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~ 103 (170)
+..+|.|+++||++|+...|.+.++.+...+.. +.+.+|++. .+.-.+.++ +|+++ ||.+.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lCR-ef~V~~~Ptlr 121 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLCR-EFSVSGYPTLR 121 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhHh-hcCCCCCceee
Confidence 588999999999999999999999999887663 677777764 344456665 77775 78765
No 162
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.23 E-value=0.0081 Score=40.05 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=67.9
Q ss_pred ecCCCC--CCcEEEEEEec--CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881 25 VDLSTY--KGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP 100 (170)
Q Consensus 25 ~~l~~~--~gk~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p 100 (170)
-+++++ .+...+|+|-+ ..+|-+.-..-.|.++.++|.+..+.+..|+.|. ..++.. +|++
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~~LA~----~fgV--- 89 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SEAIGD----RFGV--- 89 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CHHHHH----HcCC---
Confidence 345554 34556666664 3577888888888899999965458999998863 222222 4332
Q ss_pred ceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 101 IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 101 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
...||+ ++-++|+++....|..+.+++.+.|+++|..
T Consensus 90 -------------------------------~siPTL-l~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 90 -------------------------------FRFPAT-LVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred -------------------------------ccCCEE-EEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 222374 4557999999999999999999999999864
No 163
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.22 E-value=0.0068 Score=39.69 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=65.5
Q ss_pred cCCCCCCcEEEEEEec--CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC-CCChHHHHHHHHhhcCCCCCce
Q 030881 26 DLSTYKGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE-PGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 26 ~l~~~~gk~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
+|++++++--+|.++| ..-+.-..+...|++-...+.++.+.++.+.-+.+.... .-+........+ .++++
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~-~l~~~---- 76 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRK-RLRIP---- 76 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHH-HhCCC----
Confidence 3566766544444444 334455677888888888888888999998544321111 111222222221 32221
Q ss_pred EEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
+..++++||+++|.+..++....+++++-+.|+..
T Consensus 77 -----------------------------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 77 -----------------------------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -----------------------------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 11128899999999999988888999888888753
No 164
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.16 E-value=0.00099 Score=50.03 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.6
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCc
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v 66 (170)
...++|.|+|+||.+|++.-|...++--++++.|.
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCC
Confidence 36999999999999999999999988888877653
No 165
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0065 Score=41.28 Aligned_cols=136 Identities=20% Similarity=0.159 Sum_probs=79.7
Q ss_pred ccccCCcccccceee---CC----CCCeecCCCC-CCc-EEEEEEecCCCCCC-hhhHHHHHHHHHHhccCCc-EEEEee
Q 030881 4 QFIQNPESIFDLSVK---DA----RGHEVDLSTY-KGK-VLLIVNVASKCGMT-NSNYIELSQLYDKYKDQGL-EILAFP 72 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~---~~----~g~~~~l~~~-~gk-~~lv~f~~~~C~~C-~~~~~~l~~~~~~~~~~~v-~~v~is 72 (170)
.....|+.+|+-++. +. .+.+++++++ +|| .+|+=.-+.+.|.| ....|.+-+..++++.+|+ +++-+|
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 457789999993332 21 1227888886 784 55555557889985 5679999999999999996 455556
Q ss_pred cCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 73 CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 73 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
+| ++-.+..|.+ .++.+-.+-...|.++.....+ +.... ..+. +.++..- ++-++=.||++.+....
T Consensus 87 Vn--------DpFv~~aW~k-~~g~~~~V~f~aD~~g~ftk~l-gleld-~~d~-~~g~RS~-R~a~vvengkV~~~nvE 153 (171)
T KOG0541|consen 87 VN--------DPFVMKAWAK-SLGANDHVKFVADPAGEFTKSL-GLELD-LSDK-LLGVRSR-RYALVVENGKVTVVNVE 153 (171)
T ss_pred cC--------cHHHHHHHHh-hcCccceEEEEecCCCceeeec-cceee-eccc-cCccccc-cEEEEEeCCeEEEEEec
Confidence 65 5677777776 5555433322255555433211 11110 0000 0011111 44455568999888544
No 166
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.06 E-value=0.0021 Score=39.33 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
-|..|..+||++|......|+++..++ .++.+..++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 367788899999999999999999876 35777777765
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0037 Score=49.25 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeec
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPC 73 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~ 73 (170)
...+++.|+++||++|+...|.+.++...++. .++.+..++.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 46889999999999999999999999999874 5688888764
No 168
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.04 E-value=0.001 Score=43.48 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCcEEEEEEec-------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.|++++|.|.+ +|||.|....|.+++......+ +..+|.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 56788888884 4999999999999998888443 5888888763
No 169
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.03 E-value=0.006 Score=36.56 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=19.7
Q ss_pred ecCCCCCChhhHHHHHHHHHHhc
Q 030881 40 VASKCGMTNSNYIELSQLYDKYK 62 (170)
Q Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
.+++|+.|......++++...+.
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC
Confidence 56779999999999999988873
No 170
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.003 Score=45.22 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=61.1
Q ss_pred eeCCCCCeecCCCC-CCc--EEEEEEe-cC----CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881 17 VKDARGHEVDLSTY-KGK--VLLIVNV-AS----KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA 88 (170)
Q Consensus 17 l~~~~g~~~~l~~~-~gk--~~lv~f~-~~----~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~ 88 (170)
+.+.+| +.+|.++ .|| .+|..|. ++ -|+.|...+..+.-....++.+++.+++||-. ..+++.
T Consensus 57 Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~~l~ 127 (247)
T COG4312 57 FETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLEELV 127 (247)
T ss_pred eecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHHHHH
Confidence 334455 5778885 564 4554453 33 49999999999999899998889999999854 567888
Q ss_pred HHHHhhcCCCCCceEEeec
Q 030881 89 DFVCTRFKSEFPIFEKIDV 107 (170)
Q Consensus 89 ~~~~~~~~~~~p~~~~~d~ 107 (170)
.+.+ ++|-.||+++..+.
T Consensus 128 ~~k~-rmGW~f~w~Ss~~s 145 (247)
T COG4312 128 AYKR-RMGWQFPWVSSTDS 145 (247)
T ss_pred HHHH-hcCCcceeEeccCc
Confidence 8876 88999999965543
No 171
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.02 E-value=0.0084 Score=44.53 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHH
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDK 60 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~ 60 (170)
.++.+|+.|....||+|++...++..+.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 568999999999999999999998887654
No 172
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.97 E-value=0.007 Score=44.43 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.|+.+|+.|....||+|++..+++.++.+ .++.+..+.+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P 145 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFP 145 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEecc
Confidence 57899999999999999999988887644 45666655443
No 173
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.89 E-value=0.015 Score=37.65 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhH------------------
Q 030881 54 LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPL------------------ 115 (170)
Q Consensus 54 l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~------------------ 115 (170)
|.+...++++.|+.++.|.+. +.+.+++|++ ..+.++|++ .|++......+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~-~~~~p~~ly--~D~~~~lY~~lg~~~~~~~~~~~~~~~~~ 70 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCE-LTGFPFPLY--VDPERKLYKALGLKRGLKWSLLPPALWSG 70 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHh-ccCCCCcEE--EeCcHHHHHHhCCccccccCCCchHHHHH
Confidence 566778888899999999975 6666999996 678889977 55543211100
Q ss_pred ----HHHhHh-ccCCcc-CCccccCceeEEECCCCcEEEEeCC
Q 030881 116 ----YKLLKS-GKWGIF-GDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 116 ----~~~~~~-~~~~~~-~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
..-... ..++.. ...+.-...+||+|++|+|++.|..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 71 LSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 000111 122222 2333334478999999999998753
No 174
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.70 E-value=0.008 Score=34.99 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=23.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
++.|..+||++|......+.+ .++.+..++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 567788999999987666554 45677777665
No 175
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.67 E-value=0.0035 Score=42.32 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.++++|+.|+..+||+|....+.+.++..++.+ +.++..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 468999999999999999999999998887754 55554444
No 176
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.007 Score=39.24 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCC-CCcEEEEEEec--------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 27 LSTY-KGKVLLIVNVA--------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 27 l~~~-~gk~~lv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++. +|+.+++.|.+ +|||.|.+..|-+.+..+... .++.||-+-+.
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG 74 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVG 74 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEec
Confidence 3444 67778888875 499999999999998888544 34888888663
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.38 E-value=0.019 Score=33.94 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=24.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|..|..++||+|......|++ +|+.+-.++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456778999999998877764 45777777765
No 178
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.37 E-value=0.01 Score=33.62 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=24.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..++||+|......| ++.|+.+-.++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4678889999999887766 3356777777775
No 179
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.36 E-value=0.011 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|......|+++... ..++-++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCC
Confidence 4667789999999999888876552 556666554
No 180
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.30 E-value=0.02 Score=34.52 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+.+.-|+.|..+||++|......|.+ .|+.+..++++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 445556778889999999998877753 46777777765
No 181
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.039 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=20.1
Q ss_pred CCcEEEEEEecCCCCCChhhHH
Q 030881 31 KGKVLLIVNVASKCGMTNSNYI 52 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~ 52 (170)
.+|||+|...++||..|+.+..
T Consensus 42 edkPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred hCCCEEEEeccccccchHHHhh
Confidence 6899999999999999998763
No 182
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.15 E-value=0.018 Score=34.54 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=22.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|..|+.+|||+|......|++ +|+.+-.++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 356778999999998877764 34555556554
No 183
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.14 E-value=0.021 Score=35.07 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=27.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|......|.++..++. ++.+..++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456678999999999988888765543 3666666654
No 184
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.18 Score=33.18 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP 100 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p 100 (170)
..|.+|+-|.-.|-|.|+.+-..|.++.+...+- .++.-+.. .+...|.+ -++++.|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi-----------deV~~~~~-~~~l~~p 78 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI-----------DEVPDFVK-MYELYDP 78 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec-----------chhhhhhh-hhcccCC
Confidence 4589999999999999999999999999998652 33444433 35666665 5566554
No 185
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.03 E-value=0.014 Score=39.80 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=39.0
Q ss_pred ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecC
Q 030881 25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCN 74 (170)
Q Consensus 25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d 74 (170)
..+.+-.++++|+.|+...||+|....+.+.++.+++-+. .+.++..++.
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 4455666799999999999999999999999999998322 3888877763
No 186
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.93 E-value=0.071 Score=39.96 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=35.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
++-+|||+||-+.++.|......|..|+.+|.. ++|+.|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 456999999999999999999999999999987 999999753
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.87 E-value=0.033 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=23.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|......|.+.. +.+..++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECC
Confidence 45677899999999887776543 556666654
No 188
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.69 E-value=0.11 Score=42.97 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=30.8
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
++..+-.|.+++||+|+.....++++..+..+ +..-.|..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~ 515 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDV 515 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEEC
Confidence 44556666799999999999999999998763 66666654
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.55 E-value=0.084 Score=31.08 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=23.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..++|+.|.+....|++ +|+.+-.++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 345667999999998877664 56777777765
No 190
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.33 E-value=0.038 Score=38.30 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.+++.|+.|+...||+|....+.+.++..++++ ++.+.-+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 579999999999999999999999999999854 366655543
No 191
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.085 Score=31.93 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=29.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|.-++||+|......|. .+|+.+.-|.++. +..++..++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVK 46 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHH
Confidence 44556688999998876666 4677777777652 23345556665
No 192
>PHA03050 glutaredoxin; Provisional
Probab=95.20 E-value=0.049 Score=35.07 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.4
Q ss_pred EEEEEecCCCCCChhhHHHHHHHH
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLY 58 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~ 58 (170)
-|+.|..+|||+|......|.+.-
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC
Confidence 366788899999998877665543
No 193
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.17 E-value=0.091 Score=31.87 Aligned_cols=32 Identities=6% Similarity=0.270 Sum_probs=24.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|..|..+||++|......|. ++|+.+-.++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence 45667899999998776663 367888888775
No 194
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.13 E-value=0.21 Score=33.26 Aligned_cols=92 Identities=10% Similarity=-0.024 Sum_probs=59.8
Q ss_pred cEEEEEEecC--CCCC-Ch-hhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881 33 KVLLIVNVAS--KCGM-TN-SNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN 108 (170)
Q Consensus 33 k~~lv~f~~~--~C~~-C~-~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~ 108 (170)
++=+|-|... .|.. +. .....+.+++++|+++.+.++.++.+. ... +.+ .+++.=
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~~-~fgl~~--------- 79 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LEE-ALNIGG--------- 79 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HHH-HcCCCc---------
Confidence 4445555432 2432 33 346788899999998889999998752 122 332 333310
Q ss_pred CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhcC
Q 030881 109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~~ 169 (170)
...| ++++++.++. .|. +.+..+.+.+.+.++..+.+
T Consensus 80 --------------------~~~P---~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 80 --------------------FGYP---AMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred --------------------cCCC---EEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 1122 7788888776 666 77888999999999998864
No 195
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.88 E-value=0.18 Score=31.72 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+.+.++|+-.+ +|||+|......|.+ .|+.+..++++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 34566666543 799999988766655 34666666654
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.65 E-value=0.35 Score=39.79 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=32.3
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.+..-+..|....||+|+.....++++..+.+. +..-.|..
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~--i~~~~id~ 155 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPN--ITHTMIDG 155 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC--ceEEEEEc
Confidence 455668888899999999999999999887653 77666643
No 197
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.63 E-value=0.1 Score=32.98 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=21.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|.+....|.+ .|+.+-.+.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid 41 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID 41 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence 556777999999987765543 34545555554
No 198
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.60 E-value=0.12 Score=30.28 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|.+....|++ .|+.+..++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 456677999999998766653 45667677665
No 199
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.40 E-value=0.13 Score=30.21 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=23.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
..|..++||+|......|++ +|+.+-.++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45667999999998877753 56777777765
No 200
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.028 Score=40.58 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=37.1
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~ 75 (170)
+++.++++||+.||.+|......+..+.+.+ .+++++.+..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7899999999999999999888888888887 458888887653
No 201
>PRK10638 glutaredoxin 3; Provisional
Probab=94.27 E-value=0.23 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=22.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|..|..+|||+|......|.+ +|+.+..++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 445667999999988876664 45666666665
No 202
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.22 E-value=0.26 Score=35.03 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHH
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQ 56 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~ 56 (170)
.++..|+.|....||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46899999999999999999998877
No 203
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.11 E-value=0.28 Score=30.30 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=23.5
Q ss_pred CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
++++++|+--+ +|||+|......|.+. |+.+-.++++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 45566665443 5999999877665543 4566666654
No 204
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.05 Score=39.23 Aligned_cols=45 Identities=18% Similarity=0.020 Sum_probs=41.0
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~ 75 (170)
+.+++||.|++.|.+-|....|-+.++..+|...++++-.|++..
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr 187 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR 187 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc
Confidence 457999999999999999999999999999998889999998753
No 205
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=0.12 Score=36.38 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=45.5
Q ss_pred eCCCCCeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 18 KDARGHEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 18 ~~~~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
.+..|..+...++ +.+..+|.|. -.-|--|+++...|..+.+-++..|+..+.|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778999999996 5555555555 68899999999999999888888999999986
No 206
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.37 E-value=0.12 Score=37.24 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=34.3
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d 74 (170)
..|++.|+.|+.-.||+|....+.+ ..+.+.+.+ ++.++-+.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~ 81 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE 81 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence 3678999999999999999988765 677777754 4677766653
No 207
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.36 E-value=0.93 Score=37.30 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
.++.-+-.|....||+|+.....++++..+.+. +..-.|.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id 155 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMID 155 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEE
Confidence 456678888899999999998899888888763 6655554
No 208
>PRK10824 glutaredoxin-4; Provisional
Probab=92.95 E-value=0.41 Score=31.15 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=18.8
Q ss_pred CCcEEEEEEec----CCCCCChhhHHHHHHH
Q 030881 31 KGKVLLIVNVA----SKCGMTNSNYIELSQL 57 (170)
Q Consensus 31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~ 57 (170)
..+.|+|+--+ +|||+|.+...-|+++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 34566666554 5999999988766654
No 209
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.87 E-value=0.16 Score=30.89 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|..|+...||+|....+.+.++.....+ ++.+.-..+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4678889999999999999998855443 4777766654
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.06 E-value=1.6 Score=35.19 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=48.8
Q ss_pred cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
..+-.+.+.-.+|+.+++.+++|..-+|...++- .+|...+...+.+.+++.++||.+|-+..+
T Consensus 274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 274 ETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred hhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 3444455544467889999999976666655543 577888888899999999999999999876
No 211
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=91.60 E-value=0.91 Score=29.04 Aligned_cols=59 Identities=14% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
..++++|+=-+|.||.+.....++++..+...+. +.+..+.+- ....+-..++.++++.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVK 76 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCC
Confidence 3678888888999999999999999999998765 777777763 3455555555465553
No 212
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.21 E-value=0.49 Score=30.73 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=34.9
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|+.++|+.|+.....|.+ +|+.+..+++.. .+.+.+++.++++ ..+.++
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~el~~l~~-~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGE----DGPTREELLDILS-LLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCC----ChhhHHHHHHHHH-HcCCCH
Confidence 4567999999998866655 456777776642 3457888888886 556443
No 213
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.98 E-value=2.2 Score=33.99 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=31.7
Q ss_pred cccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 131 i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
++..|+.|+|+..|+-+....|...+++|...|++..
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 4445699999999999999999999999998887764
No 214
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.34 Score=28.79 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=29.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
.-|++..||.|......+.++.-. ..+|-|. .+-..+++|..
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHHh
Confidence 457889999999888777665433 4455553 25678888885
No 215
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=90.64 E-value=1.9 Score=29.42 Aligned_cols=142 Identities=17% Similarity=0.231 Sum_probs=75.4
Q ss_pred ccCCcccccceeeCC-----CCCeecC-----CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHH-hccCCcEEEE-eec
Q 030881 6 IQNPESIFDLSVKDA-----RGHEVDL-----STYKGKVLLIVNVASKCGMTNSNYIELSQLYDK-YKDQGLEILA-FPC 73 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~-----~g~~~~l-----~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~v~~v~-is~ 73 (170)
+..|.++|+..+.+. +|+.++. +++-||+-++.-.|-....=....+-+..+... |+....+--. |+.
T Consensus 23 lq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~ 102 (184)
T COG3054 23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINT 102 (184)
T ss_pred cccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEecc
Confidence 456788888876543 4444443 445799988888876554433444445444332 2211233222 233
Q ss_pred CCCCCCCCCChHHHHHHHHhhcCCCCCceE-EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881 74 NQFGEEEPGSNDQIADFVCTRFKSEFPIFE-KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~ 152 (170)
|+ .-+.+..=.+.-++ ...--||+-- ..|..+ .+...|+... ... .++++|++|++.+...|
T Consensus 103 DD---Ai~GtgmFVkssae-~~Kke~pwSq~vlD~~g-vak~AWqL~e-~~S-----------aivVlDk~G~VkfvkeG 165 (184)
T COG3054 103 DD---AIPGTGMFVKSSAE-SNKKEYPWSQFVLDSNG-VAKNAWQLKE-ESS-----------AVVVLDKDGRVKFVKEG 165 (184)
T ss_pred CC---ccccccceeecchh-hccccCCceeeEEccch-hhhhhhcccc-ccc-----------eEEEEcCCCcEEEEecC
Confidence 32 01122222222222 2233345411 145555 4444554321 122 77999999999999999
Q ss_pred CCCchHHHHHHH
Q 030881 153 TTSLLSLEHDIK 164 (170)
Q Consensus 153 ~~~~~~l~~~l~ 164 (170)
..+..++.+.|.
T Consensus 166 aLt~aevQ~Vi~ 177 (184)
T COG3054 166 ALTQAEVQQVID 177 (184)
T ss_pred CccHHHHHHHHH
Confidence 988887766654
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.9 Score=33.32 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 19 DARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 19 ~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
..++...-..+..++++++.|....||+|.+..+.+.+.+....+..+.+.-+.+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f 125 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPF 125 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeec
Confidence 3455555556666699999999999999999999999977777665444444333
No 217
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=1.1 Score=28.53 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=25.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
+|.|.-+||++|...-.-|++ +. -...++-+.-+ ....++.++..
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~-------~~g~eiq~~l~ 60 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDED-------EDGSEIQKALK 60 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCC-------CCcHHHHHHHH
Confidence 455677999999984444443 22 12445554322 23446666665
No 218
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=89.48 E-value=0.84 Score=29.36 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..++|+.|++...-|++ +|+.+-.+++.. .+.+.+++.++.+ ..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~el~~~~~-~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVE----EPPSKEELKKWLE-KSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccC----CcccHHHHHHHHH-HcCC
Confidence 4557899999988755544 456666666542 3457788888876 4443
No 219
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.20 E-value=1 Score=28.54 Aligned_cols=48 Identities=13% Similarity=0.338 Sum_probs=31.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
..|..++|+.|++....|++ +|+.+-.+++.. .+.+.+++.++.. ..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~~l~~~~~-~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLK----EPPTKEELKELLA-KLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeecc----CCCCHHHHHHHHH-hcC
Confidence 35667999999998755544 455555555531 3457788888876 444
No 220
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=89.10 E-value=3.8 Score=28.23 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=24.4
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+++.|..............++.+..+++++ +.++.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~ 136 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD 136 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence 555555444444556666777777777655 777777653
No 221
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.94 E-value=4.3 Score=33.79 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEe
Q 030881 28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71 (170)
Q Consensus 28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~i 71 (170)
+++++.+.|+.|+...|..|.+....|+++.. +.++ +.+...
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~-i~~~~~ 403 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK-LNSEAV 403 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc-EEEEEe
Confidence 44677778888888888888777666666663 3333 555444
No 222
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.69 E-value=0.12 Score=37.74 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=32.5
Q ss_pred cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
.-.++.|.++|||-|.--.+.+.++..--.+.++.+--|.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 4567889999999999999999999887777776655553
No 223
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.41 E-value=0.82 Score=30.43 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
..|..++|+.|++...-| .++|+.+-.+++.. .+.+.+++.++++ ..+.+
T Consensus 3 ~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~----~~~~~~eL~~~l~-~~~~g 52 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFS----SPLTIDEIKQILR-MTEDG 52 (131)
T ss_pred EEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccC----ChhhHHHHHHHHH-HhcCC
Confidence 345579999999976443 33466666666532 3457788888886 54433
No 224
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.36 E-value=1.6 Score=28.25 Aligned_cols=49 Identities=6% Similarity=0.136 Sum_probs=33.1
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE 98 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
.|..++|+.|++....|++ +|+.+-.+++.. .+.+.+++.++++ ..+.+
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~----~~~~~~el~~~~~-~~~~~ 52 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFK----QPLTKEELKEILS-LTENG 52 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCC----CcchHHHHHHHHH-HhcCC
Confidence 4557899999998765554 456666666532 3457888998887 54443
No 225
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=87.80 E-value=2.5 Score=28.15 Aligned_cols=43 Identities=14% Similarity=-0.006 Sum_probs=34.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
..|.+++-|...|-+.|+.+-..|.++.++.++- ..+..+..+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4699999999999999999999999999988663 556666554
No 226
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.68 E-value=1.3 Score=32.91 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=27.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 63 (170)
.||+.+++..+.|||+|..+.=.|-....+|..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 689999999999999999987666666666654
No 227
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.38 E-value=1.4 Score=28.12 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
..|..++|+.|++...-|.+ +|+.+-.+++.. .+-+.+++.++++ ..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~----~p~s~~eL~~~l~-~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRK----DGLDAATLERWLA-KVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEeccc----CCCCHHHHHHHHH-HhC
Confidence 35667999999998755443 455555555431 3568999999987 555
No 228
>PTZ00062 glutaredoxin; Provisional
Probab=87.20 E-value=2.5 Score=30.49 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+.++++|+--+ ++|++|++....|++ .++.+..++++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 44566666654 578888876655553 45777777665
No 229
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=86.01 E-value=6.2 Score=25.32 Aligned_cols=77 Identities=9% Similarity=-0.071 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHH---hccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccC
Q 030881 48 NSNYIELSQLYDK---YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW 124 (170)
Q Consensus 48 ~~~~~~l~~~~~~---~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~ 124 (170)
......+..+.++ ++++ +.++.++.+.+ ....+ .+|++-
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~--------~~~~~----~fgl~~------------------------- 71 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA-INFLTADGDKF--------RHPLL----HLGKTP------------------------- 71 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce-EEEEEEechHh--------hhHHH----HcCCCH-------------------------
Confidence 4456777888888 8877 88999877531 22222 333320
Q ss_pred CccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhcC
Q 030881 125 GIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 125 ~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~~ 169 (170)
...| .+.+++-++.-.+. ..+..+++.+.+.++..+.+
T Consensus 72 ----~~~P---~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 72 ----ADLP---VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred ----hHCC---EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 0111 55666655533444 44567888899999988765
No 230
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=1.9 Score=31.64 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.2
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
.+|+||..|+|++...|..+++++++.+.
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~~ 278 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQLLS 278 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHHHH
Confidence 66999999999999999999998776653
No 231
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=84.21 E-value=2.6 Score=28.05 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=33.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|..++|+.|++...- +.++|+.+-.+++.. .+-+.+++.++++ ..+.++
T Consensus 4 iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~----~~~s~~eL~~~l~-~~~~~~ 53 (132)
T PRK13344 4 IYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGK----EPLTKEEILAILT-KTENGI 53 (132)
T ss_pred EEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCC----CCCCHHHHHHHHH-HhCCCH
Confidence 4556899999986633 334566666666542 3568889999987 555443
No 232
>PRK12559 transcriptional regulator Spx; Provisional
Probab=83.61 E-value=3.1 Score=27.68 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=31.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|..++|+.|++...-|. ++|+.+-.+++.. .+.+.+++.++++
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~----~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVS----NSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeC----CcCCHHHHHHHHH
Confidence 34556799999999774433 3456666665532 3568899999987
No 233
>PHA03075 glutaredoxin-like protein; Provisional
Probab=83.23 E-value=1 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=26.5
Q ss_pred cEEEEEEecCCCCCChhhHHHHHHHHHHhc
Q 030881 33 KVLLIVNVASKCGMTNSNYIELSQLYDKYK 62 (170)
Q Consensus 33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
|.+++-|.-+.|+.|......+.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999999999988888875
No 234
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=81.83 E-value=9 Score=26.65 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=45.4
Q ss_pred ccccCCcccccceeeC-CCCCeecCCCC---CCcEEEEEEecCC-CCCChhhHHHHHHHHH-------HhccC------C
Q 030881 4 QFIQNPESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASK-CGMTNSNYIELSQLYD-------KYKDQ------G 65 (170)
Q Consensus 4 ~~~~~g~~~p~f~l~~-~~g~~~~l~~~---~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~-------~~~~~------~ 65 (170)
..+.+|.++|+..+.. .||+++.|.+. .|++-|+.|-+.. .+.+...+..+.+..+ +|... -
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 3467999999999987 58999999984 7999999999754 4555555555555443 44332 2
Q ss_pred cEEEEeecC
Q 030881 66 LEILAFPCN 74 (170)
Q Consensus 66 v~~v~is~d 74 (170)
+.++.|...
T Consensus 108 ~~~~~I~~~ 116 (169)
T PF07976_consen 108 FDVLLIHSS 116 (169)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEecC
Confidence 778888753
No 235
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=81.05 E-value=22 Score=26.95 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=32.1
Q ss_pred CcccccceeeCCCCCeecCCCCC--CcEEEEEEecCCCCCChhhH-HHHHHHHHHhc--cCCcEEEEeecC
Q 030881 9 PESIFDLSVKDARGHEVDLSTYK--GKVLLIVNVASKCGMTNSNY-IELSQLYDKYK--DQGLEILAFPCN 74 (170)
Q Consensus 9 g~~~p~f~l~~~~g~~~~l~~~~--gk~~lv~f~~~~C~~C~~~~-~~l~~~~~~~~--~~~v~~v~is~d 74 (170)
-..+|-|++.|.+|.++-...-. ++.+...|. |.... ..++++..... ..+++|+.++++
T Consensus 72 L~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 72 LAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp HTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred hcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 45789999999999998666654 566665555 34444 34455555543 456999999875
No 236
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=80.26 E-value=2.5 Score=25.37 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=35.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
|+.|....|+-|-.....+.++..+ .++.+-.|+++ +.++ +.. +|+..-|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~~-~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LFE-KYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HHH-HSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HHH-HhcCCCCEE
Confidence 5666778999999988888876555 34778888775 2223 332 777777776
No 237
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=78.78 E-value=4.9 Score=32.19 Aligned_cols=32 Identities=3% Similarity=0.132 Sum_probs=23.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
|+.|..+|||+|.+.-.-|++ +|+.+-.|+++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 567778999999987755544 46777777775
No 238
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=78.45 E-value=3.4 Score=29.66 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
.|-||||..+...-|-|......|+.+..+|++ ++||-|-
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 478999999999999999999999999999988 8999884
No 239
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.89 E-value=3.7 Score=28.63 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
+|.+|+..-||+|-...+.+.++.+++.+-.+....+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 366777889999999999999999999553455555544
No 240
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=73.72 E-value=21 Score=22.90 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHhc-cCCcEEEEeecC
Q 030881 48 NSNYIELSQLYDKYK-DQGLEILAFPCN 74 (170)
Q Consensus 48 ~~~~~~l~~~~~~~~-~~~v~~v~is~d 74 (170)
......+.+++++++ ++ +.++.++.+
T Consensus 34 ~~~~~~~~~vAk~fk~gk-i~Fv~~D~~ 60 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK-LNFAVADKE 60 (111)
T ss_pred HHHHHHHHHHHHHCcCCe-EEEEEEcHH
Confidence 345678889999998 56 888888654
No 241
>PRK10026 arsenate reductase; Provisional
Probab=72.77 E-value=26 Score=23.65 Aligned_cols=103 Identities=12% Similarity=0.168 Sum_probs=55.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC-CceE-------Eeec
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF-PIFE-------KIDV 107 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-------~~d~ 107 (170)
+..|+.+.|.-|++...-|++ +|+.+-.+++- ..+-+.+++.++++ ..+.+. .+++ ....
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~----~~ppt~~eL~~~l~-~~g~~~~~lint~~~~yr~L~~ 71 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYL----ETPPTRDELVKLIA-DMGISVRALLRKNVEPYEELGL 71 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeee----CCCcCHHHHHHHHH-hCCCCHHHHHHcCCchHHHcCC
Confidence 345557899999998865543 34555555442 13458899999997 555421 1111 0000
Q ss_pred --CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 108 --NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 108 --~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
......+++.. ....| .-+. +-+|++.+|.++.+ +++.+.+.|
T Consensus 72 ~~~~ls~~e~l~l-l~~~P----~LIK---RPIi~~~~~a~i~R-----p~e~v~~~l 116 (141)
T PRK10026 72 AEDKFTDDQLIDF-MLQHP----ILIN---RPIVVTPLGTRLCR-----PSEVVLEIL 116 (141)
T ss_pred CccCCCHHHHHHH-HHhCc----ccee---CcEEEcCCCeEEEC-----CHHHHHHHh
Confidence 11111222221 22334 3344 55899888877765 566666666
No 242
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.15 E-value=6.2 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhc
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYK 62 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
|.+|+...||.|-...+.|.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 556667899999999999999999983
No 243
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=70.07 E-value=16 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=28.2
Q ss_pred EEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCC
Q 030881 36 LIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQF 76 (170)
Q Consensus 36 lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~ 76 (170)
||+.| +--|.-|...-.-|.++..+ .+|..++.++|..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYW 39 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYW 39 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcc
Confidence 45666 56899999999999999999 3699999999754
No 244
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=69.70 E-value=18 Score=25.89 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=40.2
Q ss_pred CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
+.-.+..|.-..|+.|...+..+.. .+..+.+..|..+ .+.+.+.+|+. .++++-..+
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA~-~~~Idp~~V 165 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWAN-RHQIDPAKV 165 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHHH-HcCCCHHHe
Confidence 3445556666999999998887744 2345777777643 37789999997 667665444
No 245
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=66.96 E-value=13 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.284 Sum_probs=33.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+-.|+.+.|.-|++...-|+ ++|+.+-.++.- ..+-+.+++.++++ ..+.++
T Consensus 3 itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~----~~~~s~~eL~~~l~-~~g~~~ 54 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYL----KTPPSREELKKILS-KLGDGV 54 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEee----cCCCCHHHHHHHHH-HcCccH
Confidence 44566789999998875544 345544444332 13458899999987 556443
No 246
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=65.27 E-value=58 Score=24.67 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=47.1
Q ss_pred cCCcccccceeeCCCCCeecCCCCCC-cEEEEEEecCCCCCChh-hHHHHHHHHHHhc--cCCcEEEEeecCCCCCCCCC
Q 030881 7 QNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNVASKCGMTNS-NYIELSQLYDKYK--DQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~--~~~v~~v~is~d~~~~~~~~ 82 (170)
..-..+|-|++.|.+|..+-...-.| +.+-+++.. .. ....++++....+ +.+++|+.|+++
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~------qedA~afL~~lk~~~p~l~~~~kV~pvsL~-------- 142 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFR------QEDAEAFLAQLRKRKPEVGSQAKVVPITLD-------- 142 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECC------HHHHHHHHHHHHhhCccccCCceEEEEEHH--------
Confidence 34568899999999999986665544 544443331 12 3344455544443 335899999875
Q ss_pred ChHHHHHHHHhhcCCCCCce
Q 030881 83 SNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~ 102 (170)
.+.+... + ++.|.++
T Consensus 143 ---~vYkl~~-e-~l~F~fi 157 (270)
T TIGR00995 143 ---QVYKLKV-E-GIGFRFL 157 (270)
T ss_pred ---HHHHHhh-c-CccEEEe
Confidence 5555543 3 4666655
No 247
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=65.20 E-value=19 Score=25.18 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=42.9
Q ss_pred CC-cEEEEEEecCCCC-CChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881 31 KG-KVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF 99 (170)
Q Consensus 31 ~g-k~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.| |-+++++=.|=-+ .-....|++.++.++.++.|+.++-+|.+ +...++.++. .++++|
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~~-~l~v~f 87 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAAE-KLGVPF 87 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhhh-hcCCce
Confidence 44 6777777665433 23456799999999999999999999864 5566666664 656555
No 248
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=64.76 E-value=20 Score=19.33 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEECCCCcEEEEeCCCCCc--hHHHHHHHHHh
Q 030881 138 FLVDKNGQVVDRYYPTTSL--LSLEHDIKKLL 167 (170)
Q Consensus 138 ~lid~~G~i~~~~~~~~~~--~~l~~~l~~~l 167 (170)
|.|.+||+|...-.|.... .++.+.|+++|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 7899999999986663322 24555565555
No 249
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=62.70 E-value=17 Score=19.60 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=21.6
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~ 166 (170)
...|.+.||+|+...-+..+..+.++.|+.+
T Consensus 7 ~f~L~a~ng~viasse~Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 7 RFRLKAGNGEVIASSEGYSSKADAEKGIESV 37 (49)
T ss_dssp EEEEE-TTS-EEEEBEEBSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 6678999999999866666666666666654
No 250
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.39 E-value=20 Score=23.10 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=30.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
..|..+.|+.|++...-|. ++|+.+-.+++- ..+-+.+++..+++ ..+
T Consensus 3 ~iy~~p~C~~crkA~~~L~-------~~gi~~~~~d~~----~~p~s~~eL~~~l~-~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLE-------AAGHEVEVRDLL----TEPWTAETLRPFFG-DLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCCcEEeehh----cCCCCHHHHHHHHH-HcC
Confidence 3455789999998774443 345555555442 13458899999987 444
No 251
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=61.31 E-value=59 Score=23.42 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=36.0
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
+..-||+.||-..-..|..+-.+|..+++.+-+ ..|+-|+.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 456899999998889999999999999999855 89999975
No 252
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=59.31 E-value=15 Score=24.49 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=22.1
Q ss_pred CceeEEECCCCcEEEE----eCCCCCchHHHHHHHHHh
Q 030881 134 NFAKFLVDKNGQVVDR----YYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 134 ~p~~~lid~~G~i~~~----~~~~~~~~~l~~~l~~~l 167 (170)
.|++-|+ ++|++++. +....+++.+.+.|..+.
T Consensus 96 SPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 96 SPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred Cchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 4464444 79999998 344457777888887765
No 253
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=56.30 E-value=56 Score=21.56 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 49 SNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 49 ~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.++-.++...+.++++|+.+.-.++.
T Consensus 24 ~eL~~~a~~~~~Lk~~gv~v~RyNL~ 49 (123)
T PF06953_consen 24 PELVRFAADLDWLKEQGVEVERYNLA 49 (123)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCceEEEEccc
Confidence 56788888999999999999999875
No 254
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.56 E-value=19 Score=25.59 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=36.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV 91 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~ 91 (170)
++.||...|+.-......++++....+..|+.++.-.- ++++.++...-+++|.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaq--p~~qs~~draLL~d~W 95 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQ--PGEQSPEDRALLKDFW 95 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEec--CCcCCHHHHHHHHHhc
Confidence 45677777887777788889999999888988776542 3333333444455554
No 255
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=55.43 E-value=67 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=33.2
Q ss_pred CcccccceeeC-CCCCeecCCCC---CCcEEEEEEecCC-CCCChhhHHHHH
Q 030881 9 PESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASK-CGMTNSNYIELS 55 (170)
Q Consensus 9 g~~~p~f~l~~-~~g~~~~l~~~---~gk~~lv~f~~~~-C~~C~~~~~~l~ 55 (170)
|..+|++.+.. .+++++.|.+. .|++-|+.|-+.- ++..+..+..+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~ 52 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLC 52 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHH
Confidence 56788999887 48898888874 7899999999753 334444333333
No 256
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=55.41 E-value=34 Score=21.96 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=32.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..+.|.-|++...-|++ +|+.+..+++- ..+-+.+++..+++ ..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l~-~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIFA-KLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHHH-HcCC
Confidence 4556899999988765544 34555555542 13568899999987 5554
No 257
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=52.63 E-value=57 Score=22.21 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 43 KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
+|++|......|+. .++.+-.++++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999877665554 34666666654
No 258
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=52.38 E-value=25 Score=21.04 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEECCCCcEEEEeCC-----CCCchHHHHHHHHHhc
Q 030881 137 KFLVDKNGQVVDRYYP-----TTSLLSLEHDIKKLLG 168 (170)
Q Consensus 137 ~~lid~~G~i~~~~~~-----~~~~~~l~~~l~~~l~ 168 (170)
.|.|+++|.|..-+.| ..+.+++++.|++.++
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHH
Confidence 4899999999887544 4577778888877764
No 259
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=51.83 E-value=11 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.1
Q ss_pred CceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 134 NFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 134 ~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
-|++|++|=+|-|.+. ..+.|+++|..+|.
T Consensus 97 ~~r~~VldF~Gdi~A~-----~v~~LReeisail~ 126 (155)
T PF08496_consen 97 KPRLFVLDFKGDIKAS-----EVESLREEISAILS 126 (155)
T ss_pred CCeEEEEecCCCccHH-----HHHHHHHHHHHHHH
Confidence 3599999999999875 45678888888874
No 260
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=50.79 E-value=15 Score=20.93 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=18.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.|...||+.|.+..-.+.. ++..++++.++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-----AGITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-----cCCCcEEEEeCC
Confidence 3456899999877544432 233355555543
No 261
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=50.49 E-value=1.6e+02 Score=25.19 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=77.1
Q ss_pred cccCCcccccceeeC-CCCCeecCCC-C--CCcEEEEEEecC-CCCCChhhHHHHHHHHH--------HhccCC------
Q 030881 5 FIQNPESIFDLSVKD-ARGHEVDLST-Y--KGKVLLIVNVAS-KCGMTNSNYIELSQLYD--------KYKDQG------ 65 (170)
Q Consensus 5 ~~~~g~~~p~f~l~~-~~g~~~~l~~-~--~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~--------~~~~~~------ 65 (170)
.+.+|..+|++.+.. .+++++.|.+ + .|++.|+.|-+. ..+.....+..+.+... .|...+
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAV 541 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcE
Confidence 366899999999987 4777777665 3 689999988864 33455555555544331 222111
Q ss_pred cEEEEeecCCCCCCCCCChHHHH---HHHH---hhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeE
Q 030881 66 LEILAFPCNQFGEEEPGSNDQIA---DFVC---TRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKF 138 (170)
Q Consensus 66 v~~v~is~d~~~~~~~~~~~~~~---~~~~---~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~ 138 (170)
+.++.|+... ...-++. .... ..++. +|.-+. .|.. ..... |.........| .++
T Consensus 542 ~~~~~i~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--~~~~gi~~~~g-------~~v 603 (634)
T PRK08294 542 IDVRAIFQQP------HRELDLEDVPALLLPRKGRFGLTDYEKVF-CADL--SGADI--FDLRGIDRDRG-------AVV 603 (634)
T ss_pred EEEEEEecCC------CCccchhhCcHhhCCcccccCccchhhee-cCCC--chhhH--HHhhCCCCCce-------eEE
Confidence 5666665431 1112222 2211 01222 222111 1110 11111 11212222223 889
Q ss_pred EECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 139 LVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 139 lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
++=|||-|-+... ..+.+.+.+.+..++..
T Consensus 604 vvRPD~~v~~~~~-l~~~~~l~~yf~~~~~~ 633 (634)
T PRK08294 604 VVRPDQYVANVLP-LDAHAELAAFFAGFLLA 633 (634)
T ss_pred EECCCCceEEEec-CccHHHHHHHHHHhccC
Confidence 9999998877632 34566788888777653
No 262
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.16 E-value=51 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.294 Sum_probs=31.4
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS 97 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (170)
.|..+.|.-|++...-|+ ++|+.+..+++- ..+-+.+++..+++ ..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~----~~~~t~~el~~~l~-~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLE-------EAGIEPEIVEYL----KTPPTAAELRELLA-KLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHH-------HCCCCeEEEecc----cCCcCHHHHHHHHH-HcCC
Confidence 455688999998764443 345556666542 13458899999987 5554
No 263
>PRK10853 putative reductase; Provisional
Probab=46.89 E-value=51 Score=21.38 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=31.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK 96 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~ 96 (170)
.|..+.|.-|++...-|.+ +|+.+-.+++-. .+-+.+++.+++. +.+
T Consensus 4 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k----~p~s~~eL~~~l~-~~g 50 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRV----DGLDSELLQGFID-ELG 50 (118)
T ss_pred EEcCCCCHHHHHHHHHHHH-------cCCCcEEeehcc----CCcCHHHHHHHHH-HcC
Confidence 4456899999988755543 356555555421 3458899999986 555
No 264
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=46.31 E-value=50 Score=20.53 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=20.9
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
.+-+.+|+|++.|. ...+++..+.+++.+.
T Consensus 50 lV~V~~p~g~v~Y~---~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 50 LVEVETPGGRVAYG---PVTPADVASLLDAGAL 79 (92)
T ss_pred EEEEEeCCCcEEEE---eCCHHHHHHHHHHHhh
Confidence 54565788876665 5678888888877654
No 265
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=45.43 E-value=14 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=23.2
Q ss_pred EecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 39 NVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
|+..+||.|......+.+. +. ...+.++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~--~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DR--GGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CC--CCCEEEEECC
Confidence 6778999999999888777 21 1348888884
No 266
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=45.01 E-value=25 Score=23.68 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCChh-------hHHHHHHHHHHhccCCcEEEEeecC
Q 030881 35 LLIVNVASKCGMTNS-------NYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 35 ~lv~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.=|.|.+|-|-.|.. ...++.++.++|...++.++-=+.|
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 345688999999975 4567778888988877666655543
No 267
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=43.63 E-value=1.3e+02 Score=22.61 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=42.7
Q ss_pred cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhH
Q 030881 41 ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~ 120 (170)
+..|+- ..-+..+..+|.++|+.+|-|+-+++ ..-.++.+.++ .....|-++. .|..-...+.-|..++
T Consensus 60 ~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l~-~~~~kFIlf~-DDLsFe~~d~~yk~LK 128 (249)
T PF05673_consen 60 ARGTGK----SSLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLLR-DRPYKFILFC-DDLSFEEGDTEYKALK 128 (249)
T ss_pred CCCCCH----HHHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHHh-cCCCCEEEEe-cCCCCCCCcHHHHHHH
Confidence 445553 34456677888888999999976532 23445555554 3345565554 2455444454566666
Q ss_pred hccC
Q 030881 121 SGKW 124 (170)
Q Consensus 121 ~~~~ 124 (170)
..+-
T Consensus 129 s~Le 132 (249)
T PF05673_consen 129 SVLE 132 (249)
T ss_pred HHhc
Confidence 5555
No 268
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=43.10 E-value=14 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=19.0
Q ss_pred eeEEECCCCcEEEEeCCC-CCchHHHHHHHHHhc
Q 030881 136 AKFLVDKNGQVVDRYYPT-TSLLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~-~~~~~l~~~l~~~l~ 168 (170)
-.|.||++|++.....-. .+...+.+...++++
T Consensus 20 v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~ 53 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVK 53 (79)
T ss_dssp EEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHC
T ss_pred EEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHH
Confidence 448999999998762111 112235555555554
No 269
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=43.02 E-value=38 Score=19.26 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=18.3
Q ss_pred eeEEECCCCcEEEEeCCCC-CchHHHHHHHHHh
Q 030881 136 AKFLVDKNGQVVDRYYPTT-SLLSLEHDIKKLL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~-~~~~l~~~l~~~l 167 (170)
-.|.|+++|++.....-.. ....+.+...+++
T Consensus 14 v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av 46 (74)
T TIGR01352 14 VRFTVDADGRVTSVSVLKSSGDEALDRAALEAV 46 (74)
T ss_pred EEEEECCCCCEEEEEEEEcCCChhHHHHHHHHH
Confidence 3489999999987632111 1234555544444
No 270
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=42.87 E-value=25 Score=24.54 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEe
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAF 71 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~i 71 (170)
+|..+.|+.|-..-|.+.++..++..+ .+.++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 577899999999999999999999876 3344443
No 271
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=42.40 E-value=1.7e+02 Score=23.45 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=33.6
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHH-----------hhcCC
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVC-----------TRFKS 97 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~-----------~~~~~ 97 (170)
.|+|++++|- +.+.++++.+.++.+ ...+..|+.. +++..+.+.+|.. .+-|+
T Consensus 304 ~~~P~liF~p---------~I~~~eq~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILERGV 369 (441)
T COG4098 304 TGRPVLIFFP---------EIETMEQVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILERGV 369 (441)
T ss_pred cCCcEEEEec---------chHHHHHHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhccc
Confidence 5788888774 344555555555322 2566777654 3456677777643 12377
Q ss_pred CCCce
Q 030881 98 EFPIF 102 (170)
Q Consensus 98 ~~p~~ 102 (170)
+||-+
T Consensus 370 Tfp~v 374 (441)
T COG4098 370 TFPNV 374 (441)
T ss_pred ccccc
Confidence 78754
No 272
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=41.79 E-value=48 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.371 Sum_probs=17.5
Q ss_pred eeEEECCCCcEEEE-eCCCCCchHHHHHHHHHh
Q 030881 136 AKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l 167 (170)
-.+.|+++|+|... .........+.+.+.++|
T Consensus 30 V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai 62 (85)
T PF13103_consen 30 VRITIDPDGRVISVRIVKSSGNPAFDAAVRRAI 62 (85)
T ss_dssp EEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEecCCCCHHHHHHHHHHH
Confidence 34899999999544 222233345666666555
No 273
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=41.05 E-value=32 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEEEecCCCCCChh-------hHHHHHHHHHHhccCCcEEEEeec
Q 030881 36 LIVNVASKCGMTNS-------NYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 36 lv~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
=|.|.+|-|-.|.. ...++.++.++|...++.++-=+.
T Consensus 33 evvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaa 77 (154)
T PRK13265 33 EVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAA 77 (154)
T ss_pred eEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEeccc
Confidence 35688899999975 446677888888887766655443
No 274
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=39.92 E-value=1e+02 Score=19.76 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=44.1
Q ss_pred ecCCCCCC-cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC---CCCChHHHHHHHHhhcCCCCC
Q 030881 25 VDLSTYKG-KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE---EPGSNDQIADFVCTRFKSEFP 100 (170)
Q Consensus 25 ~~l~~~~g-k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~---~~~~~~~~~~~~~~~~~~~~p 100 (170)
-.++++.+ ..-|+-|+ .|+.|. ...+....+++.+.|+..|-++.=-.... .=...+.+++.++..+ .++
T Consensus 28 g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~ 101 (107)
T PF08821_consen 28 GAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIE 101 (107)
T ss_pred CccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCC
Confidence 34666765 56777775 566666 67777777777778888877765222111 1134677777776544 335
Q ss_pred ce
Q 030881 101 IF 102 (170)
Q Consensus 101 ~~ 102 (170)
++
T Consensus 102 VV 103 (107)
T PF08821_consen 102 VV 103 (107)
T ss_pred Ee
Confidence 44
No 275
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=39.63 E-value=47 Score=19.91 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=19.8
Q ss_pred ceeEEECCCCcEEEE-eCCCCCchHHHHHHHHH
Q 030881 135 FAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKL 166 (170)
Q Consensus 135 p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~ 166 (170)
|..+++|.+|+++-+ .....+.+++.+.|.+-
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 488999999997666 33445777788887654
No 276
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=39.39 E-value=33 Score=20.08 Aligned_cols=14 Identities=43% Similarity=0.843 Sum_probs=11.8
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
..|++|++|++++.
T Consensus 55 ~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 55 YAFIVDKNGTIIAH 68 (81)
T ss_dssp EEEEEETTSBBCE-
T ss_pred EEEEEECCCCEEEe
Confidence 66999999999987
No 277
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=38.98 E-value=80 Score=24.67 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
.|||+++.|-..--+.+...+..+++...+..-.|+-++++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 6999999998766677778888888888886666788888865
No 278
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=37.94 E-value=82 Score=19.92 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=22.7
Q ss_pred EecCC-CCC--Chhh---HHHHHHHHHHhccCCcEEEEeec
Q 030881 39 NVASK-CGM--TNSN---YIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 39 f~~~~-C~~--C~~~---~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
+|..| +|. |... +.++++-..++.+.=|.+++++.
T Consensus 45 yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 45 YWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred EEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 56665 564 7644 55556666666665589999863
No 279
>PRK12359 flavodoxin FldB; Provisional
Probab=37.84 E-value=1.2e+02 Score=21.16 Aligned_cols=12 Identities=8% Similarity=0.006 Sum_probs=6.2
Q ss_pred CchHHHHHHHHH
Q 030881 155 SLLSLEHDIKKL 166 (170)
Q Consensus 155 ~~~~l~~~l~~~ 166 (170)
+.+.+.++++++
T Consensus 153 t~~ri~~W~~~~ 164 (172)
T PRK12359 153 SDERIQQWCEQI 164 (172)
T ss_pred hHHHHHHHHHHH
Confidence 344566655544
No 280
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=37.27 E-value=34 Score=19.21 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=13.5
Q ss_pred EecCCCCCChhhHHHHHHH
Q 030881 39 NVASKCGMTNSNYIELSQL 57 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (170)
|..++|+.|.+..-.+...
T Consensus 4 y~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 4 YDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EeCCCCcchHHHHHHHHHc
Confidence 4567899999877665443
No 281
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=37.25 E-value=4.2 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=15.2
Q ss_pred CCCCChhhHHHHHHHHHHhc
Q 030881 43 KCGMTNSNYIELSQLYDKYK 62 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~ 62 (170)
.|.||+.-.+.|.++.+++.
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 57799999999988888774
No 282
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=36.84 E-value=1e+02 Score=20.28 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=30.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881 36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC 92 (170)
Q Consensus 36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~ 92 (170)
+..|..+.|.-|++...-|++ +|+.+-.+++-. .+-+.+++..+++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~----~p~t~~eL~~~l~ 48 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDILK----EPWHADTLRPYFG 48 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeccC----CCcCHHHHHHHHH
Confidence 344556889999987755443 455555555421 3468899999987
No 283
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=36.68 E-value=80 Score=19.93 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=28.4
Q ss_pred ecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 40 VASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
..+.|.-|++...-|. ++|+.+..+++-. .+-+.+++.++++ ..+..+.-+
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~k----~p~s~~el~~~l~-~~~~~~~~l 52 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYKK----EPLSREELRELLS-KLGNGPDDL 52 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETTT----S---HHHHHHHHH-HHTSSGGGG
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhhh----CCCCHHHHHHHHH-HhcccHHHH
Confidence 3467777777665443 3567777776632 3468899999997 667554433
No 284
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=36.14 E-value=28 Score=20.28 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=11.7
Q ss_pred EecCCCCCChhhHHHHH
Q 030881 39 NVASKCGMTNSNYIELS 55 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~ 55 (170)
+..++|+.|.+..-.|.
T Consensus 5 y~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 5 YEFEGSPFCRLVREVLT 21 (77)
T ss_pred ecCCCCchHHHHHHHHH
Confidence 44578999997665443
No 285
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=35.79 E-value=37 Score=25.86 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=13.9
Q ss_pred EecCCCCCChhhHHHHHHHHHHh
Q 030881 39 NVASKCGMTNSNYIELSQLYDKY 61 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~ 61 (170)
...+|||.|-... .++.+.+.+
T Consensus 15 ~~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 15 QEPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCCcCCCCCCHH-HHHHHHHHH
Confidence 3446999998654 455555544
No 286
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=35.77 E-value=69 Score=19.58 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=20.6
Q ss_pred CCCC--h---hhHHHHHHHHHHhccCCcEEEEeec
Q 030881 44 CGMT--N---SNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 44 C~~C--~---~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
|..| . ..+.++++-..++++.=|.+++++.
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~ 70 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDP 70 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 6677 4 3456666666777666689999853
No 287
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=35.33 E-value=30 Score=19.93 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=12.2
Q ss_pred EEecCCCCCChhhHHHHH
Q 030881 38 VNVASKCGMTNSNYIELS 55 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~ 55 (170)
.|....||.|++..-.|.
T Consensus 4 Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred EEEcCCCHHHHHHHHHHH
Confidence 344578999998774443
No 288
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.99 E-value=92 Score=24.19 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=33.9
Q ss_pred eeCCCCCeecCCCCCCcEEEEEEecC----CCCCChhhHHHHHHHHHHhccC
Q 030881 17 VKDARGHEVDLSTYKGKVLLIVNVAS----KCGMTNSNYIELSQLYDKYKDQ 64 (170)
Q Consensus 17 l~~~~g~~~~l~~~~gk~~lv~f~~~----~C~~C~~~~~~l~~~~~~~~~~ 64 (170)
+.|.+=+.+.....++-.+++.|-|+ -|..|..+..+++-+.+.++..
T Consensus 45 ~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~ 96 (331)
T KOG2603|consen 45 MNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN 96 (331)
T ss_pred ecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc
Confidence 33333334444556777778888764 5999999999999999988643
No 289
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=34.83 E-value=1.5e+02 Score=20.20 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=24.7
Q ss_pred EEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 34 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.-++.|..+.|+=|..-+..| +.+|+++=.+..|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~ 59 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETD 59 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecC
Confidence 446667789999998766554 4567888877665
No 290
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=34.11 E-value=1.6e+02 Score=22.25 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccC
Q 030881 53 ELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW 124 (170)
Q Consensus 53 ~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~ 124 (170)
-+.++..+|.++|..+|-|+-++. .+-..+-+-.+ ...-.|.+++ .|..-...+..|..++..+-
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~Lr-~~~~kFIlFc-DDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELLR-ARPEKFILFC-DDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHHh-cCCceEEEEe-cCCCCCCCchHHHHHHHHhc
Confidence 345667777778888998864421 12223333343 2244555554 34444444555666666555
No 291
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=33.68 E-value=38 Score=18.29 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=13.0
Q ss_pred EecCCCCCChhhHHHHHHH
Q 030881 39 NVASKCGMTNSNYIELSQL 57 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (170)
|...+|+.|.+....++..
T Consensus 4 y~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EeCCCCccHHHHHHHHHHc
Confidence 4457799999776555544
No 292
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=33.36 E-value=1.1e+02 Score=19.00 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
.-|++| +|+|+++..+......+-..+.+++
T Consensus 26 hgflfd-dg~~vw~e~~d~~w~rl~~vv~al~ 56 (111)
T PF02484_consen 26 HGFLFD-DGDIVWSEDDDETWNRLCDVVNALI 56 (111)
T ss_pred cceEec-CCcEEEecCChHHHHHHHHHHHHHH
Confidence 337887 7999999666554444544444443
No 293
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=33.00 E-value=1.2e+02 Score=18.56 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=21.6
Q ss_pred eeEEECCCCcEEEEeC-CCCC-chHHHHHHHHHhc
Q 030881 136 AKFLVDKNGQVVDRYY-PTTS-LLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~-~~~~-~~~l~~~l~~~l~ 168 (170)
.++++|.+|+-+-... |... +.++.+.|.+++.
T Consensus 40 aVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 40 AVVVVDEDGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 8899999998766643 3333 5778888888764
No 294
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=32.13 E-value=37 Score=19.18 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=11.4
Q ss_pred EecCCCCCChhhHHHHH
Q 030881 39 NVASKCGMTNSNYIELS 55 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~ 55 (170)
+...+||+|.+..-.+.
T Consensus 4 y~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 4 YIYEHCPFCVKARMIAG 20 (71)
T ss_pred EecCCCcHhHHHHHHHH
Confidence 34578999996654443
No 295
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=30.71 E-value=71 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=13.0
Q ss_pred ccCCccccCceeEEECCCCcEEEE
Q 030881 126 IFGDDIQWNFAKFLVDKNGQVVDR 149 (170)
Q Consensus 126 ~~~~~i~~~p~~~lid~~G~i~~~ 149 (170)
.+|..|-.. -.|++.++|.|+.+
T Consensus 29 ~yG~EI~~~-D~y~i~~~geIvL~ 51 (71)
T PF09466_consen 29 FYGDEIFPG-DDYFISPDGEIVLE 51 (71)
T ss_dssp TTSS-B-TT-S-EEE-ETTEEEEC
T ss_pred eeccccccC-CeEEEeCCCcEEeh
Confidence 344344333 34888889999987
No 296
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=30.17 E-value=1.3e+02 Score=20.41 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=43.1
Q ss_pred ccceeeCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 13 FDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 13 p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
-++.|.+..|..+++.+. ++..-++..-|+.-.+=...+..++.++.-++...+.+..+.+
T Consensus 38 e~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL 99 (142)
T PF07801_consen 38 EDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGL 99 (142)
T ss_pred hhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 345566777888888885 5555555555665556666777788888888877788888776
No 297
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.13 E-value=66 Score=19.36 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=21.1
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
.+.++ ||+++.. .+++++.+.|.+.|++
T Consensus 47 pFAlV--nG~~V~A----~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 47 PFALV--NGEIVAA----ETAEELLEKIKEKIEE 74 (78)
T ss_pred ccEEE--CCEEEec----CCHHHHHHHHHHHHhc
Confidence 34566 4898886 6888999999888754
No 298
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=29.95 E-value=39 Score=20.09 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=13.0
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
..+|++++|.++..
T Consensus 17 ~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 17 GAVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEEETTSEEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 67999999999998
No 299
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=29.75 E-value=2.5e+02 Score=23.48 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 42 SKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
+...-...+...|=++..+++++|+.+|.||.
T Consensus 172 PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 172 PTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 34445677888888888889888999999986
No 300
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=29.29 E-value=1e+02 Score=18.74 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=21.5
Q ss_pred eeEEECCCCcEEEEe-----CCCCCchHHHHHHHHHhc
Q 030881 136 AKFLVDKNGQVVDRY-----YPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~-----~~~~~~~~l~~~l~~~l~ 168 (170)
-++.+|.+|+|+... ....+++.|.+.|...++
T Consensus 32 V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n 69 (93)
T PF02575_consen 32 VTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVN 69 (93)
T ss_dssp EEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHH
T ss_pred EEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHH
Confidence 348999999999883 223566777777766654
No 301
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=29.20 E-value=59 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=13.0
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
.+|+||++|+++|.
T Consensus 106 ~vf~vd~~G~~vy~ 119 (295)
T COG3322 106 GVFVVDPSGKLVYS 119 (295)
T ss_pred EEEEECCCCCEEEE
Confidence 67999999999998
No 302
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=28.53 E-value=1.5e+02 Score=18.30 Aligned_cols=37 Identities=3% Similarity=-0.069 Sum_probs=23.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.+|.|.+...++.-..=+++..-+..+++.+-.+.++
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~ 39 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDIS 39 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecC
Confidence 3444555555555555555556666678888888775
No 303
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.50 E-value=2.1e+02 Score=19.96 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=60.3
Q ss_pred ccccceeeCCCCCeecCCCCCC-cEEEEEEecCCCC-------CChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881 11 SIFDLSVKDARGHEVDLSTYKG-KVLLIVNVASKCG-------MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG 82 (170)
Q Consensus 11 ~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~~~~C~-------~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~ 82 (170)
-.|..++++..--+....+++| |.+|++ -..|- .-..+++.++++...|.++++.+++=|.. ..+.|
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~D 95 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEYD 95 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---ccccC
Confidence 3455555555554555555555 555543 34453 23457888889999998887877776542 33455
Q ss_pred ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhH
Q 030881 83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~ 120 (170)
.....++..++ ..+.|++........-..+++.|..
T Consensus 96 ~d~s~Ak~le~--k~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 96 HDDSKAKALEA--KIGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred CchHHHHHHHH--hhCCceEeecccCCCccHHHHHHHh
Confidence 66666776653 5667888644433333344555543
No 304
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=28.14 E-value=90 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=15.8
Q ss_pred cCCCCCChhh--HHHHHHHHHHh
Q 030881 41 ASKCGMTNSN--YIELSQLYDKY 61 (170)
Q Consensus 41 ~~~C~~C~~~--~~~l~~~~~~~ 61 (170)
.+|||.|-.. +..+++..+++
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 5799999865 66777777665
No 305
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.02 E-value=1.6e+02 Score=20.68 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=34.3
Q ss_pred EEEEEEecCCCCCCh----------hhHHHHHHHHHHhccCCcEEEEeecC
Q 030881 34 VLLIVNVASKCGMTN----------SNYIELSQLYDKYKDQGLEILAFPCN 74 (170)
Q Consensus 34 ~~lv~f~~~~C~~C~----------~~~~~l~~~~~~~~~~~v~~v~is~d 74 (170)
.++|++-..+|+.+. ...+.++++.+..+..|..++.....
T Consensus 8 LivID~Q~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~ 58 (205)
T COG1335 8 LIVVDMQNDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDW 58 (205)
T ss_pred EEEEeeeccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEeccc
Confidence 688889999999773 37789999999999999888888654
No 306
>PRK07883 hypothetical protein; Validated
Probab=27.77 E-value=1.1e+02 Score=25.75 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.8
Q ss_pred CccccCceeEEE-CCCCcEEEEe
Q 030881 129 DDIQWNFAKFLV-DKNGQVVDRY 150 (170)
Q Consensus 129 ~~i~~~p~~~li-d~~G~i~~~~ 150 (170)
..+|..|.+|+. |.+|+|+|..
T Consensus 212 ~~lP~~PGVY~~~d~~g~viYVG 234 (557)
T PRK07883 212 DGLPHAPGVYLFRGPSGEVLYVG 234 (557)
T ss_pred hhCCCCceEEEEECCCCcEEEee
Confidence 578888999888 8899999983
No 307
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.66 E-value=1.7e+02 Score=23.56 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=27.5
Q ss_pred EEEEecCCCCCChhh--HHHHHHHHHHhccCCcEEEEeecCC
Q 030881 36 LIVNVASKCGMTNSN--YIELSQLYDKYKDQGLEILAFPCNQ 75 (170)
Q Consensus 36 lv~f~~~~C~~C~~~--~~~l~~~~~~~~~~~v~~v~is~d~ 75 (170)
...|....|++|+.- ...+....+...=++|.|++++...
T Consensus 73 ~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~ 114 (420)
T COG3581 73 DAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSEN 114 (420)
T ss_pred cEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccc
Confidence 334445599999954 5666666666554569999999653
No 308
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.66 E-value=2.8e+02 Score=21.11 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=37.8
Q ss_pred EEEEEEec-CCCCCChhhHHHHH----HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 34 VLLIVNVA-SKCGMTNSNYIELS----QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 34 ~~lv~f~~-~~C~~C~~~~~~l~----~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
--++|+.. ..||+-.+.-..+. ++.+.+.+++++++-|.++. ......+.+++++ ++|++
T Consensus 31 e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNT-------ASa~al~~LR~~~--~iPVv 95 (269)
T COG0796 31 EDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNT-------ASAVALEDLREKF--DIPVV 95 (269)
T ss_pred CcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecch-------HHHHHHHHHHHhC--CCCEE
Confidence 34566664 57998776665554 46667777778888887762 2333344454344 77877
No 309
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=27.64 E-value=25 Score=26.04 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=10.9
Q ss_pred cCCCCCChhhHHHHH
Q 030881 41 ASKCGMTNSNYIELS 55 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~ 55 (170)
-.||.+|..++..=.
T Consensus 10 kpwcwycnrefddek 24 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEK 24 (341)
T ss_pred Cceeeecccccchhh
Confidence 379999998765433
No 310
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=27.48 E-value=9.4 Score=18.85 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=14.3
Q ss_pred CCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 141 DKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 141 d~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
||+|+|...+.....-..-.+.+-++|
T Consensus 4 dpegqimk~yaadpeyrkh~~v~yqil 30 (38)
T PF02526_consen 4 DPEGQIMKAYAADPEYRKHLNVLYQIL 30 (38)
T ss_pred CchhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677887777644333333334444444
No 311
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=27.30 E-value=2.8e+02 Score=22.48 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=6.9
Q ss_pred eeEEECCCCcEE
Q 030881 136 AKFLVDKNGQVV 147 (170)
Q Consensus 136 ~~~lid~~G~i~ 147 (170)
+..++|.+|+++
T Consensus 247 R~~vvd~~G~~l 258 (446)
T PRK14324 247 RLVVVDEKGEIV 258 (446)
T ss_pred eEEEECCCCCEe
Confidence 445666666543
No 312
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.89 E-value=2.2e+02 Score=19.72 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=20.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHhc
Q 030881 39 NVASKCGMTNSNYIELSQLYDKYK 62 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~ 62 (170)
|+..-||+|-...+.|.++.++++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCC
Confidence 345679999999999999999995
No 313
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=26.54 E-value=2.2e+02 Score=21.97 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCCCCeecCCCC------CCcE--EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881 19 DARGHEVDLSTY------KGKV--LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE 80 (170)
Q Consensus 19 ~~~g~~~~l~~~------~gk~--~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~ 80 (170)
..+|+.++++.. .|.+ +||-| .-||.+......+....++ .|+.||+|+...|+..+
T Consensus 13 ~~~~~~~~~~a~y~D~~~~gs~~gTVv~~--hGsPGSH~DFkYi~~~l~~---~~iR~I~iN~PGf~~t~ 77 (297)
T PF06342_consen 13 AENGKIVTVQAVYEDSLPSGSPLGTVVAF--HGSPGSHNDFKYIRPPLDE---AGIRFIGINYPGFGFTP 77 (297)
T ss_pred cccCceEEEEEEEEecCCCCCCceeEEEe--cCCCCCccchhhhhhHHHH---cCeEEEEeCCCCCCCCC
Confidence 445655554431 4533 56655 4578888888777776665 78999999998776554
No 314
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.34 E-value=2.1e+02 Score=19.40 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.7
Q ss_pred eeEEECCCCcEE
Q 030881 136 AKFLVDKNGQVV 147 (170)
Q Consensus 136 ~~~lid~~G~i~ 147 (170)
.+|+||+.|+|.
T Consensus 144 ~i~~i~~~~~~~ 155 (157)
T smart00775 144 RIFTINPKGEVH 155 (157)
T ss_pred hEEEECCCCccc
Confidence 889999999875
No 315
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=26.19 E-value=2.6e+02 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=13.2
Q ss_pred eEEECC---CCcEEEEeCCCCCchHHHHHHH
Q 030881 137 KFLVDK---NGQVVDRYYPTTSLLSLEHDIK 164 (170)
Q Consensus 137 ~~lid~---~G~i~~~~~~~~~~~~l~~~l~ 164 (170)
++|+|+ |...+-+..|..++++..+.++
T Consensus 134 iviFdRSwYnr~gVeRVmGfct~~q~~rfl~ 164 (270)
T COG2326 134 IVIFDRSWYNRAGVERVMGFCTPKQYKRFLR 164 (270)
T ss_pred EEEechhhccccCeeeccccCCHHHHHHHHH
Confidence 355555 3333334445555555444443
No 316
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=26.16 E-value=1.2e+02 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=24.5
Q ss_pred eeEEECCCCcEEEEeCC-----CCCchHHHHHHHHHhc
Q 030881 136 AKFLVDKNGQVVDRYYP-----TTSLLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~-----~~~~~~l~~~l~~~l~ 168 (170)
..+.++++|.|-.-+.| ..+.+++++.|++.|+
T Consensus 21 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 58 (165)
T TIGR03027 21 GSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA 58 (165)
T ss_pred cceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH
Confidence 45899999999888655 3467777777776653
No 317
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=26.10 E-value=38 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=15.1
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDI 163 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l 163 (170)
-++|.|.+|+++++. .+-.++++.|
T Consensus 76 L~~IYD~~G~lLW~q---r~vP~l~~~I 100 (180)
T PF08918_consen 76 LVLIYDENGKLLWRQ---RDVPELEKRI 100 (180)
T ss_dssp EEEEEETTS-EEEES---S--HHHHCCS
T ss_pred EEEEEcCCCcEEEec---CccHHHHHhc
Confidence 448889999999994 3333455444
No 318
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=25.65 E-value=59 Score=18.25 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=11.5
Q ss_pred EecCCCCCChhhHHHH
Q 030881 39 NVASKCGMTNSNYIEL 54 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l 54 (170)
|...+|+.|.+..-.+
T Consensus 4 y~~~~~~~~~~v~~~l 19 (73)
T cd03059 4 YSGPDDVYSHRVRIVL 19 (73)
T ss_pred EECCCChhHHHHHHHH
Confidence 4567899998876554
No 319
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.59 E-value=1e+02 Score=18.98 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.6
Q ss_pred eeEEECCCCcEEEEeCCCC
Q 030881 136 AKFLVDKNGQVVDRYYPTT 154 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~ 154 (170)
..++.||+|..+..+.|..
T Consensus 93 ~~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred EEEEECCCCCEEEEecCCC
Confidence 5689999999998876643
No 320
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=25.51 E-value=1.3e+02 Score=17.40 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCCeecCCCCCCcEEEEEEecCCCCCChhhHHHH
Q 030881 21 RGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIEL 54 (170)
Q Consensus 21 ~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l 54 (170)
+|-.+.+-++++..+.|.|- -.|..|......+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SSCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eCCCCCCCHHHHH
Confidence 66677788887777777665 4577776665555
No 321
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=25.03 E-value=21 Score=24.07 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.1
Q ss_pred CCCCCChhhHHHHH
Q 030881 42 SKCGMTNSNYIELS 55 (170)
Q Consensus 42 ~~C~~C~~~~~~l~ 55 (170)
.-||.|+..+|.|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 47999999999885
No 322
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=24.95 E-value=1.7e+02 Score=21.68 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=22.0
Q ss_pred cEEEEEEec-CCCC---CChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881 33 KVLLIVNVA-SKCG---MTNSNYIELSQLYDKYKDQGLEILAFPC 73 (170)
Q Consensus 33 k~~lv~f~~-~~C~---~C~~~~~~l~~~~~~~~~~~v~~v~is~ 73 (170)
+.+++++.. +.|. +|...-|.+.++..+-.+.||+++++.+
T Consensus 169 ra~vlf~v~r~d~~~F~P~~e~Dp~fa~~l~~A~~~GVev~~~~~ 213 (235)
T COG1489 169 RAVVLFLVLRSDITRFSPNREIDPKFAELLREAIKAGVEVLAYRF 213 (235)
T ss_pred ceEEEEEEecCCCcEECcccccCHHHHHHHHHHHHcCCEEEEEEE
Confidence 444444442 3343 5666666666666655555666655543
No 323
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=24.71 E-value=61 Score=20.15 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEe
Q 030881 30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71 (170)
Q Consensus 30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~i 71 (170)
|+|-+++|.+-.- ... ..+.++...++..|+.+++|
T Consensus 43 F~~~pvvldl~~l---~~~---~dl~~L~~~l~~~gl~~vgv 78 (99)
T PF05209_consen 43 FKNAPVVLDLSNL---PDE---LDLAALVELLRRHGLRPVGV 78 (99)
T ss_dssp CTTTEEEEEEEEE---ETT---HHHHHHHHHHHCCCHCCCCE
T ss_pred HcCCCeEEehhhc---CCh---hhHHHHHHHHHHcCCEEEEe
Confidence 4778888888766 222 24555555666677888888
No 324
>PRK08244 hypothetical protein; Provisional
Probab=24.70 E-value=61 Score=26.46 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=26.6
Q ss_pred cCCcccccceeeCCCCCeecCCCC--CCcEEEEEEec
Q 030881 7 QNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNVA 41 (170)
Q Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~--~gk~~lv~f~~ 41 (170)
.+|..+|+..+...+|..+++.++ .|+++|+.|..
T Consensus 392 ~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~ 428 (493)
T PRK08244 392 LNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFGS 428 (493)
T ss_pred CCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEecC
Confidence 478999999987667766677775 45799998764
No 325
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=24.57 E-value=21 Score=23.99 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=12.0
Q ss_pred CCCCCChhhHHHHH
Q 030881 42 SKCGMTNSNYIELS 55 (170)
Q Consensus 42 ~~C~~C~~~~~~l~ 55 (170)
.-||.|+..+|.|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 47999999999885
No 326
>PRK13669 hypothetical protein; Provisional
Probab=24.48 E-value=91 Score=18.79 Aligned_cols=28 Identities=32% Similarity=0.268 Sum_probs=20.6
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~ 169 (170)
.+-++ ||+++.. .+++++.+.|.+.|++
T Consensus 47 ~FAlV--ng~~V~a----~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 47 LFALV--NGEVVEG----ETPEELVENIYAHLEE 74 (78)
T ss_pred ceEEE--CCeEeec----CCHHHHHHHHHHHHhh
Confidence 33566 6888875 6888899988887753
No 327
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.05 E-value=3e+02 Score=20.31 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=26.3
Q ss_pred cEEEEEEec-CCCCCChhhHHHHHHHHHHhccC
Q 030881 33 KVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQ 64 (170)
Q Consensus 33 k~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~ 64 (170)
+.+-|++|+ .-||.|-.--+.|.++..++...
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~ 36 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQE 36 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcc
Confidence 456677775 57999999999999999998754
No 328
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=23.99 E-value=2.1e+02 Score=18.43 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=20.4
Q ss_pred EEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881 138 FLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 138 ~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
--||.+|+.+-. |..++..+++.|++.++
T Consensus 50 g~id~~~rlii~--G~~~~~~i~~~l~~yI~ 78 (110)
T smart00653 50 GSIDGKGRLIVN--GRFTPKKLQDLLRRYIK 78 (110)
T ss_pred eeECCCCeEEEE--EeeCHHHHHHHHHHHHH
Confidence 455666655544 67888889998888765
No 329
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=23.89 E-value=1.3e+02 Score=19.52 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=28.9
Q ss_pred ccccceeeCC-CCC---eecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHh
Q 030881 11 SIFDLSVKDA-RGH---EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY 61 (170)
Q Consensus 11 ~~p~f~l~~~-~g~---~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 61 (170)
.+|.-+|.+. +++ .+.+.++.|..++|.=-..-|+.|+-. |++..+++
T Consensus 41 gFP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~---Mr~~s~~~ 92 (118)
T PF14427_consen 41 GFPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGK---MRRASEKS 92 (118)
T ss_pred CCchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHH---HHHhhhcc
Confidence 3455555443 232 345555668888888888888888754 34444443
No 330
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=23.71 E-value=1.1e+02 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=12.6
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
.++++|++|++++.
T Consensus 52 ~~~~~d~~g~~~~~ 65 (161)
T PF05228_consen 52 LIFILDPDGRVLYS 65 (161)
T ss_pred EEEEEcCCCCEEEE
Confidence 77999999999983
No 331
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=23.56 E-value=71 Score=26.25 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.2
Q ss_pred CCCCChhhHHHHHHHHHHhcc
Q 030881 43 KCGMTNSNYIELSQLYDKYKD 63 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~ 63 (170)
+|.+|+.-.+.+.++.+++.+
T Consensus 379 qCtPCReGt~~l~~iL~ri~~ 399 (461)
T PLN03132 379 QCTPCREGTGWLWDIMERMKV 399 (461)
T ss_pred CCCChhhHHHHHHHHHHHHHc
Confidence 678999999999999988754
No 332
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=23.52 E-value=1.1e+02 Score=18.37 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=22.1
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
.+++|-+.|+|+-.. ..+.+++.+.+++++
T Consensus 50 ~t~~IF~sGki~itG--aks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 50 ATVLIFSSGKIVITG--AKSEEEAKKAIEKIL 79 (86)
T ss_dssp EEEEEETTSEEEEEE--ESSHHHHHHHHHHHH
T ss_pred EEEEEEcCCEEEEEe--cCCHHHHHHHHHHHH
Confidence 668888999998873 456777777766654
No 333
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=22.71 E-value=4.5e+02 Score=21.85 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=25.8
Q ss_pred ccCCcccccceeeCCCCCeecCCCC-CCcEEEEEEec
Q 030881 6 IQNPESIFDLSVKDARGHEVDLSTY-KGKVLLIVNVA 41 (170)
Q Consensus 6 ~~~g~~~p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~ 41 (170)
..+|..+|+..+. .+|..+++.|+ .++++|+.|-.
T Consensus 427 ~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~ 462 (547)
T PRK08132 427 PVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGD 462 (547)
T ss_pred CCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecC
Confidence 4479999998886 45666777776 44788887764
No 334
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=22.47 E-value=3.2e+02 Score=20.10 Aligned_cols=39 Identities=0% Similarity=0.032 Sum_probs=23.3
Q ss_pred HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 55 SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 55 ~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
.+...+++++|+.|+-.+-. +...+..+++ +.++..+++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR--------~~~~~~~~~~-~l~~~~~~I 63 (272)
T PRK15126 25 LSTLARLRERDITLTFATGR--------HVLEMQHILG-ALSLDAYLI 63 (272)
T ss_pred HHHHHHHHHCCCEEEEECCC--------CHHHHHHHHH-HcCCCCcEE
Confidence 34444556678888877653 4556666665 556654443
No 335
>PF14903 WG_beta_rep: WG containing repeat
Probab=22.34 E-value=62 Score=15.26 Aligned_cols=11 Identities=45% Similarity=0.749 Sum_probs=9.1
Q ss_pred EECCCCcEEEE
Q 030881 139 LVDKNGQVVDR 149 (170)
Q Consensus 139 lid~~G~i~~~ 149 (170)
+||.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 78899988865
No 336
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.34 E-value=2.4e+02 Score=19.37 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881 8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72 (170)
Q Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is 72 (170)
++...|.|.....+ ++-+.+.+.+..++.|.-....+..+.+.|.+..+.+--++
T Consensus 113 p~~~~P~f~~~~~~----------~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~ 167 (171)
T PF07700_consen 113 PDAKPPSFRCEEED----------DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVE 167 (171)
T ss_dssp TTSS--EEEEEEEE----------TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcCCeEEEEECC----------CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 55566676665432 35667777888889999999999999999987446655554
No 337
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.11 E-value=77 Score=21.84 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=23.6
Q ss_pred EecCCCCCChhhHHHHHHHHHHhccCCcEEEEe
Q 030881 39 NVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71 (170)
Q Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~i 71 (170)
|+..-||.|-...+.|.++..++. -.+.+..+
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~-~~i~~~p~ 35 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHG-ATVRYRPI 35 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhC-CeeEEeee
Confidence 345789999999999999998874 22444444
No 338
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=22.10 E-value=2.2e+02 Score=17.96 Aligned_cols=50 Identities=4% Similarity=-0.023 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881 37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTR 94 (170)
Q Consensus 37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~ 94 (170)
|..+.|.+....+.-.+=+++..-+..+++.+-.|.+. ..++.++++.+.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa--------~~e~~r~~mr~~ 52 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIA--------MDEEARQWMREN 52 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETT--------T-HHHHHHHHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCc--------CCHHHHHHHHHh
Confidence 44555667777777778888888888888999888774 456777777644
No 339
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=21.86 E-value=60 Score=16.55 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.0
Q ss_pred CCCcEEEE-EEecCCCCCChhh
Q 030881 30 YKGKVLLI-VNVASKCGMTNSN 50 (170)
Q Consensus 30 ~~gk~~lv-~f~~~~C~~C~~~ 50 (170)
++|+.+++ .+.+-.|+.|-..
T Consensus 20 ~~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 20 YGGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred eCCEEEEEeCCCccccccCCCE
Confidence 46777777 6667779998653
No 340
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=21.80 E-value=4.3e+02 Score=21.38 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=6.2
Q ss_pred eeEEECCCCcEE
Q 030881 136 AKFLVDKNGQVV 147 (170)
Q Consensus 136 ~~~lid~~G~i~ 147 (170)
+..+||.+|+++
T Consensus 244 R~~~vd~~G~~l 255 (443)
T TIGR01455 244 RVLAVDANGRIV 255 (443)
T ss_pred eEEEECCCCcEe
Confidence 445556665443
No 341
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=21.80 E-value=79 Score=25.99 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHHHhcc
Q 030881 43 KCGMTNSNYIELSQLYDKYKD 63 (170)
Q Consensus 43 ~C~~C~~~~~~l~~~~~~~~~ 63 (170)
+|.+|+.-.+.+.++.+++..
T Consensus 369 QCtPCReGt~~L~~iL~~i~~ 389 (461)
T PTZ00304 369 QCTPCREGTPWLVKMMERFVV 389 (461)
T ss_pred CCCChHhHHHHHHHHHHHHHc
Confidence 678999999999998888753
No 342
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=21.77 E-value=2e+02 Score=19.35 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=24.6
Q ss_pred eeEEECCCC---cEEEEeCCCCCchHHHHHHHHHhc
Q 030881 136 AKFLVDKNG---QVVDRYYPTTSLLSLEHDIKKLLG 168 (170)
Q Consensus 136 ~~~lid~~G---~i~~~~~~~~~~~~l~~~l~~~l~ 168 (170)
...+|-+.. .|+.+..|..+++++.+.|...+.
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 555665443 677778899999999998887753
No 343
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=21.59 E-value=1.8e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=24.8
Q ss_pred EEECCCCcEEEE---eCCCCCchHHHHHHHHHhcC
Q 030881 138 FLVDKNGQVVDR---YYPTTSLLSLEHDIKKLLGL 169 (170)
Q Consensus 138 ~lid~~G~i~~~---~~~~~~~~~l~~~l~~~l~~ 169 (170)
++| .+|+|... +++..+++.|.+.|+++.++
T Consensus 182 a~v-~~~rI~GvfEHHT~~l~~~kL~~~l~~l~~G 215 (254)
T PF08735_consen 182 ALV-KDGRIYGVFEHHTGMLTPEKLEEYLERLRDG 215 (254)
T ss_pred EEE-eCCEEEEEEecccCCCCHHHHHHHHHHHHcC
Confidence 455 67888777 68899999999999988653
No 344
>KOG4115 consensus Dynein-associated protein Roadblock [Cell cycle control, cell division, chromosome partitioning; Cell motility]
Probab=21.27 E-value=2.1e+02 Score=17.99 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=22.5
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l 167 (170)
.++++|..|..+...........+...+..++
T Consensus 20 giiv~d~~GvpikTt~d~~~t~~ya~~l~~L~ 51 (97)
T KOG4115|consen 20 GIIVVDNAGVPIKTTLDNTTTQQYAALLHPLV 51 (97)
T ss_pred eEEEECCCCcEeEeccCchHHHHHHHHHHHHH
Confidence 56899999988888655555555666665543
No 345
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=21.26 E-value=87 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=12.6
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
.++++|.+|+|++.
T Consensus 13 ~i~~~d~~g~I~~~ 26 (113)
T PF00989_consen 13 GIFVIDEDGRILYV 26 (113)
T ss_dssp EEEEEETTSBEEEE
T ss_pred eEEEEeCcCeEEEE
Confidence 56899999999998
No 346
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=21.05 E-value=1.7e+02 Score=18.75 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCC---CCCCCChHHHHHHHHhhcCC
Q 030881 44 CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFG---EEEPGSNDQIADFVCTRFKS 97 (170)
Q Consensus 44 C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~---~~~~~~~~~~~~~~~~~~~~ 97 (170)
|+.-......++..+++| |+.+++++.|..+ ...+.+.++..+++.+.+..
T Consensus 26 ~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 26 CPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444555555566654 5777777765322 22345678888888754433
No 347
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=21.01 E-value=45 Score=26.29 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.8
Q ss_pred cCCCCCChhhHHHHHHHHHHhccC
Q 030881 41 ASKCGMTNSNYIELSQLYDKYKDQ 64 (170)
Q Consensus 41 ~~~C~~C~~~~~~l~~~~~~~~~~ 64 (170)
.++||.|...+..|+++..++...
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~~ 117 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQM 117 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhh
Confidence 379999999999999999988643
No 348
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=20.92 E-value=1.6e+02 Score=22.63 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=7.7
Q ss_pred cCCCCCChhh
Q 030881 41 ASKCGMTNSN 50 (170)
Q Consensus 41 ~~~C~~C~~~ 50 (170)
.+|||.|-..
T Consensus 18 ~~~CpGCg~~ 27 (301)
T PRK05778 18 TTWCPGCGNF 27 (301)
T ss_pred CCCCCCCCCh
Confidence 4699999753
No 349
>PRK09267 flavodoxin FldA; Validated
Probab=20.84 E-value=2.8e+02 Score=18.78 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=4.7
Q ss_pred EEEEecCCC
Q 030881 36 LIVNVASKC 44 (170)
Q Consensus 36 lv~f~~~~C 44 (170)
|+.-..+|+
T Consensus 50 vi~g~pt~~ 58 (169)
T PRK09267 50 LILGIPTWG 58 (169)
T ss_pred EEEEecCcC
Confidence 444445675
No 350
>PRK10976 putative hydrolase; Provisional
Probab=20.71 E-value=3.5e+02 Score=19.79 Aligned_cols=39 Identities=3% Similarity=0.057 Sum_probs=22.9
Q ss_pred HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881 55 SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF 102 (170)
Q Consensus 55 ~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 102 (170)
.+...+++++|+.++-.+-. +...+..+.+ ..+...+++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR--------~~~~~~~~~~-~l~~~~~~I 63 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGR--------HHVDVGQIRD-NLEIKSYMI 63 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCC--------ChHHHHHHHH-hcCCCCeEE
Confidence 34445566678888887653 3445566664 555554433
No 351
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=20.57 E-value=98 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=12.3
Q ss_pred eeEEECCCCcEEEE
Q 030881 136 AKFLVDKNGQVVDR 149 (170)
Q Consensus 136 ~~~lid~~G~i~~~ 149 (170)
.++++|++|+|++.
T Consensus 7 ~i~v~D~~~~i~~~ 20 (110)
T PF08448_consen 7 GIFVIDPDGRIVYA 20 (110)
T ss_dssp EEEEEETTSBEEEE
T ss_pred eeEEECCCCEEEEE
Confidence 55889999999997
No 352
>PHA02762 hypothetical protein; Provisional
Probab=20.54 E-value=1.7e+02 Score=16.17 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=19.0
Q ss_pred eeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~~ 165 (170)
-++=||.+|++.|......+ .++.+.+..
T Consensus 30 vtigide~g~iayisiep~d-kdl~~~i~r 58 (62)
T PHA02762 30 VTIGIDENDKISYISIEPLD-KDLKEGIKR 58 (62)
T ss_pred EEEeECCCCcEEEEEecccc-hHHHHhhhh
Confidence 55789999999999654332 235555443
No 353
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=20.35 E-value=4.7e+02 Score=21.17 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=6.8
Q ss_pred eeEEECCCCcEEE
Q 030881 136 AKFLVDKNGQVVD 148 (170)
Q Consensus 136 ~~~lid~~G~i~~ 148 (170)
+..+||.+|+++.
T Consensus 243 Rl~~vd~~G~~i~ 255 (443)
T PRK10887 243 RVIMVDHLGNLVD 255 (443)
T ss_pred eEEEECCCCcEeC
Confidence 4455566665443
No 354
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=20.33 E-value=2.5e+02 Score=17.95 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=28.5
Q ss_pred ccccc-ceeeCCCCCeecCCC---C--CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC
Q 030881 10 ESIFD-LSVKDARGHEVDLST---Y--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ 64 (170)
Q Consensus 10 ~~~p~-f~l~~~~g~~~~l~~---~--~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~ 64 (170)
...|+ +++.|..|...+-++ . +.|.++|..-.+ ....+.+.++.+.|+.+
T Consensus 32 PRFpdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~-----~~~~~~i~~Ir~~Yk~r 87 (104)
T PF12098_consen 32 PRFPDGLTVLDAYGQWRDRATGRLIRERSKVVIIVHPDT-----PAAEARIEAIREAYKQR 87 (104)
T ss_pred cCCCCCceEEeccceEecCCCCcEeecccEEEEEEeCCC-----hHHHHHHHHHHHHHHHH
Confidence 34554 788888888776333 1 335555554332 34466666666666543
No 355
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=20.26 E-value=93 Score=23.72 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=13.9
Q ss_pred eeEEECCCCcEEEEeCC
Q 030881 136 AKFLVDKNGQVVDRYYP 152 (170)
Q Consensus 136 ~~~lid~~G~i~~~~~~ 152 (170)
+.++|+++|+++.+|..
T Consensus 103 ta~vi~~~G~ii~~YrK 119 (295)
T cd07566 103 SALVVDPEGEVVFNYRK 119 (295)
T ss_pred EEEEEcCCCeEEEEEec
Confidence 78999999998877543
Done!