Query 030882
Match_columns 170
No_of_seqs 109 out of 444
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 8.3E-51 1.8E-55 339.4 15.7 160 4-170 1-163 (274)
2 KOG2641 Predicted seven transm 100.0 1E-45 2.3E-50 319.1 15.4 161 3-170 32-194 (386)
3 KOG3979 FGF receptor activatin 76.4 28 0.0006 29.9 9.2 85 2-94 171-258 (296)
4 PRK11056 hypothetical protein; 63.2 43 0.00092 25.0 6.6 53 12-64 37-89 (120)
5 PF07226 DUF1422: Protein of u 60.4 52 0.0011 24.4 6.6 49 12-60 37-85 (117)
6 PF00558 Vpu: Vpu protein; In 52.0 22 0.00048 24.7 3.3 30 15-46 14-43 (81)
7 PF13850 ERGIC_N: Endoplasmic 51.9 12 0.00026 26.3 2.1 29 10-38 21-49 (96)
8 PF14333 DUF4389: Domain of un 48.7 28 0.0006 23.8 3.4 24 38-61 2-25 (80)
9 PF07146 DUF1389: Protein of u 48.1 24 0.00053 30.5 3.7 34 5-38 3-36 (314)
10 COG2864 FdnI Cytochrome b subu 44.4 1.3E+02 0.0027 24.8 7.1 58 2-62 111-168 (218)
11 PF10277 Frag1: Frag1/DRAM/Sfk 38.1 1.8E+02 0.004 22.3 10.3 92 2-96 118-209 (215)
12 PF04923 Ninjurin: Ninjurin ; 34.7 1.6E+02 0.0034 21.2 5.7 47 3-49 40-86 (104)
13 PRK10764 potassium-tellurite e 33.7 2.8E+02 0.006 23.6 8.0 58 4-61 162-219 (324)
14 COG1914 MntH Mn2+ and Fe2+ tra 31.7 1.9E+02 0.0041 26.0 6.8 53 7-59 293-346 (416)
15 PF07301 DUF1453: Protein of u 30.5 2.5E+02 0.0055 21.6 8.5 69 15-94 7-75 (148)
16 COG5264 VTC1 Vacuolar transpor 30.2 1E+02 0.0022 23.2 4.1 29 4-32 57-85 (126)
17 PF02285 COX8: Cytochrome oxid 27.3 66 0.0014 19.7 2.2 19 18-36 25-43 (44)
18 PF11810 DUF3332: Domain of un 27.2 1.3E+02 0.0028 23.8 4.5 48 18-65 18-69 (176)
19 COG4711 Predicted membrane pro 27.1 3.5E+02 0.0077 22.2 7.1 64 27-92 143-208 (217)
20 PF14126 DUF4293: Domain of un 26.5 2.9E+02 0.0063 21.0 6.6 51 10-64 55-107 (149)
21 cd00930 Cyt_c_Oxidase_VIII Cyt 23.7 1.6E+02 0.0035 17.9 3.5 17 19-36 27-43 (43)
22 PRK00701 manganese transport p 23.4 3.5E+02 0.0075 24.2 7.1 52 6-57 314-366 (439)
23 KOG4580 Component of vacuolar 22.6 1.8E+02 0.004 21.3 4.2 29 4-32 42-70 (112)
24 PF10361 DUF2434: Protein of u 21.7 1.8E+02 0.0038 25.0 4.5 39 10-49 222-260 (296)
25 PF11466 Doppel: Prion-like pr 20.9 48 0.001 18.6 0.7 22 1-22 1-22 (30)
26 PF11390 FdsD: NADH-dependant 20.7 95 0.0021 20.3 2.2 25 22-46 22-46 (61)
27 PF13268 DUF4059: Protein of u 20.5 2.9E+02 0.0062 18.8 7.2 34 6-41 11-44 (72)
28 COG5524 Bacteriorhodopsin [Gen 20.0 1.2E+02 0.0025 26.0 3.1 30 31-61 50-79 (285)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=8.3e-51 Score=339.42 Aligned_cols=160 Identities=32% Similarity=0.535 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Q 030882 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEAL 83 (170)
Q Consensus 4 ~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA~ 83 (170)
|+++|++||+|+++|+.+|+++|.+|++||++|++||+|+||++|+|+||++||+|+++||++ +|+|++||+|||+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~----~~~~~ir~~Yea~ 76 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAA----IYLDFIRDCYEAF 76 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999986 7999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhcC-CccccCCcc--cccCCccccCChhHHHHhhHhhcchhchhHHHHHHHHHHH
Q 030882 84 VIAKFLALLYSYLNISISKNIVPDEIKG-REIHHSFPM--TLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQ 160 (170)
Q Consensus 84 viy~F~~Ll~~ylgg~~~~~~~~~~~~~-~~~~~~~P~--~~~~~~~~~~~~~~l~~~k~~vlQy~ivkpi~~i~~iil~ 160 (170)
++|+|+.|+++|+|||++ ..+.+++ ++.+|+||+ +||+.++++.|++++|+||+||+||+++||++++++++++
T Consensus 77 ~ly~F~~Ll~~y~gg~~~---~~~~l~~~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl~~~i~iil~ 153 (274)
T PF03619_consen 77 VLYSFFSLLLNYLGGEEA---LVEVLSGKPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPLLSIISIILE 153 (274)
T ss_pred HHHHHHHHHHHHhCCHHH---HHHHhhcCCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999742 3344444 457899998 3344457889999999999999999999999999999999
Q ss_pred HhCCCCCCCC
Q 030882 161 LLGVLCLTFW 170 (170)
Q Consensus 161 ~~G~yc~~s~ 170 (170)
.+|.||||++
T Consensus 154 ~~g~y~~~~~ 163 (274)
T PF03619_consen 154 AFGVYCEGSF 163 (274)
T ss_pred HHHHhccCCC
Confidence 9999999985
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=1e-45 Score=319.07 Aligned_cols=161 Identities=31% Similarity=0.560 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q 030882 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEA 82 (170)
Q Consensus 3 ~~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA 82 (170)
+|.++..+|+.|+.+++.+|+++|++|++||+||++||+|+||++|+||||+.||+|+..|+.+ +|+|.+||||||
T Consensus 32 ~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~----~~~~~vr~~Yea 107 (386)
T KOG2641|consen 32 LLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVA----FYLDTVRECYEA 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchh----hhHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999953 799999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccchhcCCc--cccCCcccccCCccccCChhHHHHhhHhhcchhchhHHHHHHHHHHH
Q 030882 83 LVIAKFLALLYSYLNISISKNIVPDEIKGRE--IHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQ 160 (170)
Q Consensus 83 ~viy~F~~Ll~~ylgg~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~~~~~l~~~k~~vlQy~ivkpi~~i~~iil~ 160 (170)
||+|+|++||.+|+|||. + +..++++++ .+|++|+||+.|....++++++|+||+||+||+++||++++++++++
T Consensus 108 f~ly~F~sLl~~ylGGe~--~-~v~~l~~~~~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~ 184 (386)
T KOG2641|consen 108 FVLYVFLSLLFHYLGGEQ--N-IVTELEGRLIRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLY 184 (386)
T ss_pred HHHHHHHHHHHHHcCChH--H-HHHHHhccCCcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999973 3 334455543 57999999988856669999999999999999999999999999999
Q ss_pred HhCCCCCCCC
Q 030882 161 LLGVLCLTFW 170 (170)
Q Consensus 161 ~~G~yc~~s~ 170 (170)
++|+|++|+|
T Consensus 185 ~~g~y~~g~~ 194 (386)
T KOG2641|consen 185 AFGVYDDGDF 194 (386)
T ss_pred HhcccccCCc
Confidence 9999999975
No 3
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=76.43 E-value=28 Score=29.88 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH---HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Q 030882 2 NPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAI---IIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKE 78 (170)
Q Consensus 2 ~~~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~I---iRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird 78 (170)
+.|..+..+=++|...=...|..+..-|-++|..|+-|+.. ++....-+.=+..+...+. +.. +|.++-
T Consensus 171 ~lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~kil~~lv~~~~~~s~~~~~~--~~~----~~C~~~-- 242 (296)
T KOG3979|consen 171 KLHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWKILTFLVMVFSFPSGAIFYI--RHN----VYCEPG-- 242 (296)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeehhhHHHHHHHHHHHHHHHHH--Hhh----hhhhhh--
Confidence 35666666656665555778999999999999999888876 3333333333333333333 221 455544
Q ss_pred HHHHHHHHHHHHHHHH
Q 030882 79 CYEALVIAKFLALLYS 94 (170)
Q Consensus 79 ~YEA~viy~F~~Ll~~ 94 (170)
.|+.|+|+.+-.-.++
T Consensus 243 ay~~fAi~ey~sV~~n 258 (296)
T KOG3979|consen 243 AYTLFAILEYSSVFLN 258 (296)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888888887655433
No 4
>PRK11056 hypothetical protein; Provisional
Probab=63.20 E-value=43 Score=24.97 Aligned_cols=53 Identities=8% Similarity=0.192 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 030882 12 TVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQ 64 (170)
Q Consensus 12 g~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~ 64 (170)
.+|-++|+++|.|-.+|+..|.+.|+.=-.+..-.+.+-++.-..+.---.|+
T Consensus 37 SiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPe 89 (120)
T PRK11056 37 SIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 35778999999999999999999998755555555555544444444444443
No 5
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=60.39 E-value=52 Score=24.39 Aligned_cols=49 Identities=8% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 030882 12 TVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGL 60 (170)
Q Consensus 12 g~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl 60 (170)
.+|-++|+++|.|-.+|+..|.+.|+.=-.+..-.+.+-+++-..++--
T Consensus 37 SiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vra 85 (117)
T PF07226_consen 37 SIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRA 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999875444444444444333333333
No 6
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=52.03 E-value=22 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 030882 15 VMLTTHFSTQLLSEHFLSWKKPKEQKAIIIII 46 (170)
Q Consensus 15 ~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl 46 (170)
+++.+.+-.|.+ -+..|.+-..||+|-|.+
T Consensus 14 v~~iiaIvvW~i--v~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 14 VALIIAIVVWTI--VYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHHHHHHHHHH--H------------CHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHHHHH
Confidence 344445555665 578899999999887653
No 7
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=51.91 E-value=12 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 030882 10 AATVCVMLTTHFSTQLLSEHFLSWKKPKE 38 (170)
Q Consensus 10 iag~~~~la~~iS~~~I~~Hl~~y~~P~~ 38 (170)
.+|+.++++.++.++++...+.+|-+|+.
T Consensus 21 ~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~ 49 (96)
T PF13850_consen 21 SGGIISIITIVLIVILFISELYSYLSGEI 49 (96)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHcccce
Confidence 57889999999999999999999999854
No 8
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=48.68 E-value=28 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 030882 38 EQKAIIIIILMAPIYAIDSYVGLI 61 (170)
Q Consensus 38 ~Qr~IiRIl~mvPiYai~S~lsl~ 61 (170)
.+....|+++|+|.+-+.+..+..
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~~ 25 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASIV 25 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999998777666554
No 9
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=48.08 E-value=24 Score=30.46 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 030882 5 RVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKE 38 (170)
Q Consensus 5 ~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~ 38 (170)
-++.++||+++++|.+|..+.+..+..+|.+|+.
T Consensus 3 ~I~~iis~~l~~i~~~i~~~~~~~~~~~~~~~k~ 36 (314)
T PF07146_consen 3 PIGLIISLILGGIALAILLFTIIAEIKKYSQPKN 36 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4688999999999999999999999996666644
No 10
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=44.40 E-value=1.3e+02 Score=24.79 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 030882 2 NPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLID 62 (170)
Q Consensus 2 ~~~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~ 62 (170)
|+.|-.++...+.+.+.+.+|-..| .+-|.-|.-++..+|+-.+++..+-.++...+.
T Consensus 111 n~GqKl~fw~~~l~~~~l~iTGivm---w~~y~~~~~~i~~~r~s~l~h~~~a~~l~~~~~ 168 (218)
T COG2864 111 NAGQKLLFWTAILAIVLLLITGIVI---WRPYFAPYFSIPLLRLSLLLHAFAAVILIFIII 168 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH---HhhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888877 478899999999999999999988888777653
No 11
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=38.14 E-value=1.8e+02 Score=22.27 Aligned_cols=92 Identities=8% Similarity=-0.044 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Q 030882 2 NPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYE 81 (170)
Q Consensus 2 ~~~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YE 81 (170)
+.|..+..+.-++..+...+...+..+...++++-..-...+|+.+.+-.....-.....+.+... .....+.+..|
T Consensus 118 ~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~---~~~~~~~ai~E 194 (215)
T PF10277_consen 118 TVHYIGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLVISIICFISFIVFFILHNF---YGAYSIFAIFE 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHH
Confidence 468888877777777777777777777776665555666777877666554333333333333221 01346677777
Q ss_pred HHHHHHHHHHHHHHh
Q 030882 82 ALVIAKFLALLYSYL 96 (170)
Q Consensus 82 A~viy~F~~Ll~~yl 96 (170)
=....++..+...+.
T Consensus 195 w~~~~~~~~f~~t~~ 209 (215)
T PF10277_consen 195 WVLVFSNILFFLTFA 209 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555555443
No 12
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=34.73 E-value=1.6e+02 Score=21.25 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 030882 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMA 49 (170)
Q Consensus 3 ~~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mv 49 (170)
++......=+++..+=+++..-++...-.|.++|++|++.-|+--..
T Consensus 40 ~y~~~l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~ 86 (104)
T PF04923_consen 40 FYYFLLTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWA 86 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 34444555555566667778888888889999999988876654433
No 13
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=33.67 E-value=2.8e+02 Score=23.57 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 030882 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (170)
Q Consensus 4 ~~~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (170)
++.+++.-|+...+.+++-.....+-..|=.-|+.+|.-+-|..-+|-.+..+++++-
T Consensus 162 ~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~ 219 (324)
T PRK10764 162 HDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVN 219 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4556655555555555444444444446666788999999999999999999999984
No 14
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=31.68 E-value=1.9e+02 Score=25.98 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q 030882 7 TFMAATVCVMLTTHFSTQLLSEHFLSWK-KPKEQKAIIIIILMAPIYAIDSYVG 59 (170)
Q Consensus 7 ~~~iag~~~~la~~iS~~~I~~Hl~~y~-~P~~Qr~IiRIl~mvPiYai~S~ls 59 (170)
++..||.....+...|...+.+=..+.+ +|+..|.+.|...++|.-.+.-+++
T Consensus 293 ~llasg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g 346 (416)
T COG1914 293 ALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG 346 (416)
T ss_pred HHHHhHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666677778888888888888 5666777899999999888887777
No 15
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=30.54 E-value=2.5e+02 Score=21.60 Aligned_cols=69 Identities=12% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030882 15 VMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYS 94 (170)
Q Consensus 15 ~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA~viy~F~~Ll~~ 94 (170)
..+++++...-++.-.++-.+|..-|+ +.++|+.-.++.+-..+|.... +.-+.-||+++-.+|+...-
T Consensus 7 ~~~~i~m~~~vi~~R~ka~~rP~~~kk----IIlPplfmstG~lmf~~P~~~~-------~~~~~l~A~~~G~lFs~~Li 75 (148)
T PF07301_consen 7 IIIAIVMALLVIFIRMKASKRPVNGKK----IILPPLFMSTGFLMFVFPFFRP-------PWLEVLEAFLVGALFSYPLI 75 (148)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCcch----HHHhHHHHHHHHHHHhCccccc-------hHHHHHHHHHHHHHHHHHHH
Confidence 344555555667778888889985555 5688988888888888886542 45688899999888876544
No 16
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=1e+02 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030882 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLS 32 (170)
Q Consensus 4 ~~~~~~iag~~~~la~~iS~~~I~~Hl~~ 32 (170)
++++.+.|++|+++|+..++|...-|+..
T Consensus 57 ~~~g~~~a~vftivaif~~~ya~~lY~kR 85 (126)
T COG5264 57 DRLGMISAYVFTIVAIFCGFYALMLYLKR 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999888854
No 17
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=27.28 E-value=66 Score=19.73 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhcCCCc
Q 030882 18 TTHFSTQLLSEHFLSWKKP 36 (170)
Q Consensus 18 a~~iS~~~I~~Hl~~y~~P 36 (170)
++..-.-=|+.|+.+|.+.
T Consensus 25 ~~L~PagWVLshL~~YKk~ 43 (44)
T PF02285_consen 25 TFLGPAGWVLSHLESYKKR 43 (44)
T ss_dssp HHHHHHHHHHHTHHHHHT-
T ss_pred HHHhhHHHHHHHHHHhhcc
Confidence 4444444578999999765
No 18
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=27.21 E-value=1.3e+02 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHH----HHHHHHHHHHHHHHhhcccc
Q 030882 18 TTHFSTQLLSEHFLSWKKPKEQKAIIII----ILMAPIYAIDSYVGLIDFQG 65 (170)
Q Consensus 18 a~~iS~~~I~~Hl~~y~~P~~Qr~IiRI----l~mvPiYai~S~lsl~~~~~ 65 (170)
|-.+.-+-+.+-+.+++.-....+-.|= ++++|+|+|..+.=++..+.
T Consensus 18 sgC~Gsfalt~kl~~~N~~~vdnKf~r~lvf~~~i~PVYgi~~~aD~lVfNs 69 (176)
T PF11810_consen 18 SGCMGSFALTNKLYKWNKGVVDNKFVRELVFLFLISPVYGIAGLADLLVFNS 69 (176)
T ss_pred ccccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheeeee
Confidence 3334445666777777743333332222 66799999999988876654
No 19
>COG4711 Predicted membrane protein [Function unknown]
Probab=27.06 E-value=3.5e+02 Score=22.15 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHhhcCCCchhhHHH--HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030882 27 SEHFLSWKKPKEQKAI--IIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALL 92 (170)
Q Consensus 27 ~~Hl~~y~~P~~Qr~I--iRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA~viy~F~~Ll 92 (170)
..|.+|-.||++|... .|+..-.++|-+.|..+..-.-.-.. .=.+.++..-+|-++-+++.-+
T Consensus 143 ~a~f~~~~~~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~--~~~~~~t~~i~At~vl~~favI 208 (217)
T COG4711 143 TAKFGNDKKREEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTR--FDFTTVTQAIKATLVLGLFAVI 208 (217)
T ss_pred HhhcCCCcccccccceeeeehHHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHccHHHH
Confidence 5689999998887766 79999999998888877652211000 0123467778888887777643
No 20
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=26.48 E-value=2.9e+02 Score=20.97 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH--HHHHHHHHHHHHHHHhhccc
Q 030882 10 AATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIII--IILMAPIYAIDSYVGLIDFQ 64 (170)
Q Consensus 10 iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiR--Il~mvPiYai~S~lsl~~~~ 64 (170)
..++...++.++|+..|+. |.|-..|....+ +++++-.|+...+.+.-.++
T Consensus 55 ~l~il~~l~~~lal~aIFl----yKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~ 107 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFL----YKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSG 107 (149)
T ss_pred HHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566788888888875 577778999877 67777777777777766544
No 21
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=23.69 E-value=1.6e+02 Score=17.93 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhcCCCc
Q 030882 19 THFSTQLLSEHFLSWKKP 36 (170)
Q Consensus 19 ~~iS~~~I~~Hl~~y~~P 36 (170)
+..+-| |+.||.+|.+.
T Consensus 27 L~p~gW-VLshL~~YKk~ 43 (43)
T cd00930 27 LLPAGW-VLSHLENYKKR 43 (43)
T ss_pred HhhHHH-HHHHHHHhccC
Confidence 334444 78999999763
No 22
>PRK00701 manganese transport protein MntH; Reviewed
Probab=23.40 E-value=3.5e+02 Score=24.23 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh-hHHHHHHHHHHHHHHHHHH
Q 030882 6 VTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKE-QKAIIIIILMAPIYAIDSY 57 (170)
Q Consensus 6 ~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~-Qr~IiRIl~mvPiYai~S~ 57 (170)
++++.||..+.++...+..-+.+=..+.+.|.. +|.+.|++..+|.-.+..+
T Consensus 314 iGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~ 366 (439)
T PRK00701 314 IALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILL 366 (439)
T ss_pred HHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777667776666666644 7777888888887665443
No 23
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=1.8e+02 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030882 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLS 32 (170)
Q Consensus 4 ~~~~~~iag~~~~la~~iS~~~I~~Hl~~ 32 (170)
++++-..|++++++|+..++|....|+..
T Consensus 42 ~~~g~~~a~v~t~vaif~~~ya~~lYlwR 70 (112)
T KOG4580|consen 42 DRLGILSAYVYTLVAIFCGFYALFLYLWR 70 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999988887743
No 24
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=21.68 E-value=1.8e+02 Score=25.04 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 030882 10 AATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMA 49 (170)
Q Consensus 10 iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mv 49 (170)
+||+|..++.++..+ -+.|-.++.+|+.|-...|+++++
T Consensus 222 aa~~~l~~~wl~i~~-SL~hSi~~Yk~r~rg~~~~~~~~i 260 (296)
T PF10361_consen 222 AASFFLVICWLIIVY-SLRHSIYHYKPRNRGRFNRIIFLI 260 (296)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhheeccCCccchhhhHHHH
Confidence 455555554444433 367888888888877777776663
No 25
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=20.94 E-value=48 Score=18.63 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 030882 1 MNPARVTFMAATVCVMLTTHFS 22 (170)
Q Consensus 1 ~~~~~~~~~iag~~~~la~~iS 22 (170)
|.-|--+|.+|-+|+++..-+|
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~Ls 22 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSHLS 22 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHhh
Confidence 4456667888888887654443
No 26
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=20.67 E-value=95 Score=20.27 Aligned_cols=25 Identities=12% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHH
Q 030882 22 STQLLSEHFLSWKKPKEQKAIIIII 46 (170)
Q Consensus 22 S~~~I~~Hl~~y~~P~~Qr~IiRIl 46 (170)
..-.|-.|++.+..|+-++.++-.+
T Consensus 22 a~~~va~Hi~kFW~PrMR~~l~~~~ 46 (61)
T PF11390_consen 22 AVEGVANHIKKFWEPRMRRQLIAYV 46 (61)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446789999999999988887543
No 27
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.54 E-value=2.9e+02 Score=18.76 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Q 030882 6 VTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKA 41 (170)
Q Consensus 6 ~~~~iag~~~~la~~iS~~~I~~Hl~~y~~P~~Qr~ 41 (170)
-+++++.+.+++ +-.+|..++-.++-.|+..+|+
T Consensus 11 qgL~ls~i~V~~--~~~~wi~~Ra~~~~DKT~~eRQ 44 (72)
T PF13268_consen 11 QGLLLSSILVLL--VSGIWILWRALRKKDKTAKERQ 44 (72)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcCCCcHHHHH
Confidence 356666665544 4578999999999999965443
No 28
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=20.01 E-value=1.2e+02 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=24.6
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 030882 31 LSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (170)
Q Consensus 31 ~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (170)
..-..|+ -|+.-+...++|+.|..+++++-
T Consensus 50 ~~~~~p~-~r~~~~~~~~ip~~s~lAY~tMa 79 (285)
T COG5524 50 MFRKGPP-DRYAYAPAAIIPLFSGLAYFTMA 79 (285)
T ss_pred cccCCCC-ccchhHHHHHHHHHHHHHHHHHH
Confidence 3334444 78899999999999999999987
Done!