Query 030882
Match_columns 170
No_of_seqs 109 out of 444
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 41.3 18 0.00061 21.5 2.2 26 23-48 3-28 (47)
2 1kbh_B CREB-binding protein, n 37.0 28 0.00094 21.7 2.7 25 23-47 10-34 (59)
3 1zl8_A LIN-7; heterodimer, alp 33.6 25 0.00087 21.4 2.1 12 72-83 41-52 (53)
4 4htp_A DNA ligase 4; helical d 25.3 38 0.0013 26.6 2.4 22 26-47 170-191 (240)
5 1v54_M VIIIB, IX, cytochrome C 21.4 66 0.0023 19.1 2.3 21 17-37 24-44 (46)
6 2y69_M Cytochrome C oxidase po 16.4 1.3E+02 0.0043 19.4 3.0 21 17-37 48-68 (70)
7 1z65_A PRPLP, prion-like prote 15.4 51 0.0017 17.7 0.7 21 1-21 1-21 (30)
8 3l2p_A DNA ligase 3; DNA ligas 11.6 1.3E+02 0.0044 26.8 2.7 22 26-47 142-163 (579)
9 3dl8_E Protein-export membrane 11.4 1.9E+02 0.0066 19.9 3.0 22 4-25 52-73 (107)
10 1pi7_A VPU protein, U ORF prot 10.8 1.8E+02 0.0061 16.2 2.2 23 15-39 13-35 (36)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=41.29 E-value=18 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHH
Q 030882 23 TQLLSEHFLSWKKPKEQKAIIIIILM 48 (170)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~m 48 (170)
+-.+.+-+++=+.|+.|-++++||=-
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILks 28 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKS 28 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34567788888999999999999843
No 2
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=37.01 E-value=28 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHH
Q 030882 23 TQLLSEHFLSWKKPKEQKAIIIIIL 47 (170)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~ 47 (170)
+-.+.+-+++=+.|+.|-+|+.||=
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILk 34 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILK 34 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567888999999999999999984
No 3
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=33.59 E-value=25 Score=21.41 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 030882 72 FLESVKECYEAL 83 (170)
Q Consensus 72 y~~~ird~YEA~ 83 (170)
|++.+||+||-.
T Consensus 41 F~~aVREVYEhv 52 (53)
T 1zl8_A 41 FFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 799999999953
No 4
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=25.31 E-value=38 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=16.6
Q ss_pred HHHHhhcCCCchhhHHHHHHHH
Q 030882 26 LSEHFLSWKKPKEQKAIIIIIL 47 (170)
Q Consensus 26 I~~Hl~~y~~P~~Qr~IiRIl~ 47 (170)
+.+.+..=..|.|||+++||+.
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 3445555578999999999984
No 5
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=21.35 E-value=66 Score=19.05 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhcCCCch
Q 030882 17 LTTHFSTQLLSEHFLSWKKPK 37 (170)
Q Consensus 17 la~~iS~~~I~~Hl~~y~~P~ 37 (170)
.++.+---=++.|+.+|.+.+
T Consensus 24 ~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 24 LSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHhhHHHHHHHHHHhcccc
Confidence 344444455789999998873
No 6
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=16.42 E-value=1.3e+02 Score=19.40 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhcCCCch
Q 030882 17 LTTHFSTQLLSEHFLSWKKPK 37 (170)
Q Consensus 17 la~~iS~~~I~~Hl~~y~~P~ 37 (170)
+++.+---=|+.|+.+|.+.+
T Consensus 48 ~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 48 LSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHhhHHHHHHHHHHhcccc
Confidence 344444445789999998873
No 7
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=15.38 E-value=51 Score=17.69 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=13.5
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 030882 1 MNPARVTFMAATVCVMLTTHF 21 (170)
Q Consensus 1 ~~~~~~~~~iag~~~~la~~i 21 (170)
|.-|--+|.+|-+|+++..-+
T Consensus 1 MrkhLG~~wlai~c~LLfs~L 21 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHL 21 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHT
T ss_pred CcchhhhhHHHHHHHHHHhhH
Confidence 444566788888887765433
No 8
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=11.60 E-value=1.3e+02 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHhhcCCCchhhHHHHHHHH
Q 030882 26 LSEHFLSWKKPKEQKAIIIIIL 47 (170)
Q Consensus 26 I~~Hl~~y~~P~~Qr~IiRIl~ 47 (170)
+.+.+..=..|.|||+++||+.
T Consensus 142 ~l~~l~~~~~~~E~k~l~R~i~ 163 (579)
T 3l2p_A 142 ALQDIASRCTANDLKCIIRLIK 163 (579)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666688999999999984
No 9
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.37 E-value=1.9e+02 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030882 4 ARVTFMAATVCVMLTTHFSTQL 25 (170)
Q Consensus 4 ~~~~~~iag~~~~la~~iS~~~ 25 (170)
.++++++|.+|.+++++++...
T Consensus 52 ~K~T~ilailF~v~sl~L~~l~ 73 (107)
T 3dl8_E 52 TKATYWLGALFLVLALLLSVIP 73 (107)
T ss_dssp THHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999888887543
No 10
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=10.85 E-value=1.8e+02 Score=16.17 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhh
Q 030882 15 VMLTTHFSTQLLSEHFLSWKKPKEQ 39 (170)
Q Consensus 15 ~~la~~iS~~~I~~Hl~~y~~P~~Q 39 (170)
+++-+.+-.|.+. +..|.+-..|
T Consensus 13 valIiaIVVWtiv--~ieYrk~~kQ 35 (36)
T 1pi7_A 13 VAIIIAIVVWSIV--IIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhc
Confidence 4444445556554 4444444444
Done!