Query 030882
Match_columns 170
No_of_seqs 109 out of 444
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 09:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 46.3 4.8 0.00035 22.9 1.7 11 72-82 38-48 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 39.8 6.8 0.0005 22.8 1.7 12 72-83 39-50 (57)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 34.8 10 0.00074 18.4 1.6 17 83-99 8-24 (26)
4 d1zoqc1 a.153.1.1 (C:2065-2111 30.5 16 0.0012 20.1 2.2 28 23-50 3-30 (47)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 23.7 25 0.0018 18.6 2.1 18 83-100 11-28 (37)
6 d1v54m_ f.23.7.1 (M:) Mitochon 15.8 49 0.0036 17.9 2.2 20 16-35 23-42 (43)
7 d1x9na1 a.235.1.1 (A:262-533) 13.1 43 0.0031 24.9 2.0 21 26-47 166-186 (272)
8 d2fug21 c.47.1.21 (2:3-180) NA 9.0 1.5E+02 0.011 20.3 3.8 37 25-61 30-68 (178)
9 d2juza1 a.284.1.1 (A:1-72) Unc 8.5 1.4E+02 0.01 17.7 2.9 24 21-44 35-58 (72)
10 d2otaa1 a.284.1.1 (A:7-68) Hyp 8.0 1.9E+02 0.014 16.6 3.2 21 23-44 31-51 (62)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=46.26 E-value=4.8 Score=22.90 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH
Q 030882 72 FLESVKECYEA 82 (170)
Q Consensus 72 y~~~ird~YEA 82 (170)
|++.+||+||-
T Consensus 38 F~~avREVYe~ 48 (50)
T d1zl8a1 38 FFGAVREVYET 48 (50)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 79999999995
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.84 E-value=6.8 Score=22.83 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 030882 72 FLESVKECYEAL 83 (170)
Q Consensus 72 y~~~ird~YEA~ 83 (170)
|++.+||+||-.
T Consensus 39 F~~avREVYehv 50 (57)
T d1y74a1 39 FCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999953
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=34.81 E-value=10 Score=18.38 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhccc
Q 030882 83 LVIAKFLALLYSYLNIS 99 (170)
Q Consensus 83 ~viy~F~~Ll~~ylgg~ 99 (170)
+..+.||.+++-|+..|
T Consensus 8 w~fw~ffalli~ylqte 24 (26)
T d1rzhh2 8 YSFWIFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45677899999998654
No 4
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.46 E-value=16 Score=20.06 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 030882 23 TQLLSEHFLSWKKPKEQKAIIIIILMAP 50 (170)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~mvP 50 (170)
+-...+-+++=+.|++|.+++-|+=-=|
T Consensus 3 lq~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 3456777888899999999998875433
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=23.68 E-value=25 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhcccc
Q 030882 83 LVIAKFLALLYSYLNISI 100 (170)
Q Consensus 83 ~viy~F~~Ll~~ylgg~~ 100 (170)
++.+.||..|+-|+-.|+
T Consensus 11 y~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455678899999997664
No 6
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.75 E-value=49 Score=17.94 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 030882 16 MLTTHFSTQLLSEHFLSWKK 35 (170)
Q Consensus 16 ~la~~iS~~~I~~Hl~~y~~ 35 (170)
.+++..-.-=|+.|+.+|.+
T Consensus 23 f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 23 FLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHccHHHHHHHHHHhcc
Confidence 34555555558899998865
No 7
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=43 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=15.0
Q ss_pred HHHHhhcCCCchhhHHHHHHHH
Q 030882 26 LSEHFLSWKKPKEQKAIIIIIL 47 (170)
Q Consensus 26 I~~Hl~~y~~P~~Qr~IiRIl~ 47 (170)
|.+-+.+ ..|.|+|+++|++.
T Consensus 166 i~~Ll~~-~~~~E~kyliR~l~ 186 (272)
T d1x9na1 166 IKGLFVA-CRHSEARFIARSLS 186 (272)
T ss_dssp HHHHHHH-CCSTHHHHHHHHHT
T ss_pred HHHHHHh-CCHHHHHHHHHHHH
Confidence 3344444 57899999999874
No 8
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=9.03 E-value=1.5e+02 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHH--HHHHHHHHhh
Q 030882 25 LLSEHFLSWKKPKEQKAIIIIILMAPI--YAIDSYVGLI 61 (170)
Q Consensus 25 ~I~~Hl~~y~~P~~Qr~IiRIl~mvPi--Yai~S~lsl~ 61 (170)
+..|+-..|=.|+.++.|=+.+-|.|. |++.||-+.+
T Consensus 30 ~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f 68 (178)
T d2fug21 30 RRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYY 68 (178)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 334444455555556666666555554 5666655544
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=8.46 E-value=1.4e+02 Score=17.66 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHH
Q 030882 21 FSTQLLSEHFLSWKKPKEQKAIII 44 (170)
Q Consensus 21 iS~~~I~~Hl~~y~~P~~Qr~IiR 44 (170)
+-+-++..|+.|-+-|..||..+-
T Consensus 35 MvLGN~vTniln~~V~~~qR~~iA 58 (72)
T d2juza1 35 IALGNMASNLLTTSVPQTQCEALA 58 (72)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 345567889999999999998764
No 10
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=8.02 E-value=1.9e+02 Score=16.60 Aligned_cols=21 Identities=5% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCchhhHHHHH
Q 030882 23 TQLLSEHFLSWKKPKEQKAIII 44 (170)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiR 44 (170)
+-++..|+.+ ..|..||..+-
T Consensus 31 LGN~vTnii~-~V~~~qR~~iA 51 (62)
T d2otaa1 31 LGNAVTNIIA-QVPESKRVAVV 51 (62)
T ss_dssp HHHHHHHHHT-TSCGGGHHHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHH
Confidence 4456677776 79999998764
Done!