BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030884
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 77/99 (77%), Gaps = 7/99 (7%)
Query: 2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
I CVA+VG NNPL+IQ F+ + ++ LKLH+IVHCSLD+++++ + KK ++ +
Sbjct: 4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60
Query: 59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
LGLLYPTE+YKVYGYLTNTK+KFI+V D D++D+D++
Sbjct: 61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein
OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S T ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRS 98
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein
OS=Mus musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T + LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein
OS=Bos taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S + LK H+ VH SLDVV+E+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRS 98
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98
>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein
OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1
Length = 109
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNT 77
LLYPTE+YK++ L N+
Sbjct: 60 LLYPTEDYKMFRKLHNS 76
>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2
Length = 148
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 2 IACVAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFL 59
+ +++ G ++ LY++ + L + ++ SLDV+++ VN+ ++ T N+ FL
Sbjct: 6 LVFLSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGER---TSNDCFL 62
Query: 60 GLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
GLL E+ Y + +NTKVKFIL D V++ ++R
Sbjct: 63 GLLGVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQ 102
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 6 AVVGHQNNPLYIQSFTEADDALKL--------HHIVHCSLDVVDERVNNPKKSGPTLNET 57
A++GH + P++ F + K H+I H +LD+VDE T ++
Sbjct: 9 AIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEH-------ALTTSQM 61
Query: 58 FLGLLYPTENYKVYGYLTNTKVKFILVTT 86
+L ++ + V ++T ++++FI++ T
Sbjct: 62 YLKMVDKFNEWYVSAFVTASRIRFIMLHT 90
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 6 AVVGHQNNPLYIQSFTE-----ADDALKLHH-IVHCSLDVVDERVNNPK----KSGPTLN 55
A+VGH +NP+Y + F + ++D L+ IVH +LD+VDE + KS N
Sbjct: 8 AIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYLKSVDKFN 67
Query: 56 ETFLGLLYP 64
E F+ P
Sbjct: 68 EWFVSAFDP 76
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 7 VVGHQNNPLYIQSFTEADDALK-------LHHIVHCSLDVVDER----VNNPKKSGPTLN 55
+VG +NP+Y + F+ + L+ I H +LD+VDE N KS N
Sbjct: 8 IVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSIDRFN 67
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILV 84
+ F V ++T ++++FI+V
Sbjct: 68 QWF-----------VSAFITASQIRFIIV 85
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 7 VVGHQNNPLYIQSF---TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLY 63
++G +NPLY F + + L +I H SLD+V+E V N +L ++
Sbjct: 8 IIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKS-------NNMYLKIID 60
Query: 64 PTENYKVYGYLTNTKVKFILVTTDLD 89
++ ++T +KF+L+ D
Sbjct: 61 KFNKVQISSFVTAGHIKFLLLHEKKD 86
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF-----TEA-DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F TE+ DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis
familiaris GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 1 MIACVAVVGHQNNPLYIQSF----TEADDALKLH---HIVHCSLDVVDE 42
M A A++G ++NP+Y + D +L H IVH SLD+VD+
Sbjct: 1 MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQ 49
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHH--------IVHCSLDVVDE 42
M A++G ++NP+Y FT A++ I+H SLD+V++
Sbjct: 1 MPQYFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVED 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,674,660
Number of Sequences: 539616
Number of extensions: 2441735
Number of successful extensions: 6304
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6270
Number of HSP's gapped (non-prelim): 28
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)