Query 030884
Match_columns 170
No_of_seqs 144 out of 337
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pr6_A Trapp-associated protei 100.0 8E-36 2.7E-40 237.0 10.2 111 3-117 11-131 (162)
2 2j3w_A Sedlin, trafficking pro 100.0 3.4E-32 1.2E-36 210.9 10.3 128 2-154 6-140 (142)
3 2j3t_C Trafficking protein par 99.9 6.9E-25 2.4E-29 170.7 10.2 127 1-154 2-138 (145)
4 2j3t_D Trafficking protein par 99.8 3.4E-21 1.2E-25 159.3 5.9 122 6-154 85-210 (219)
5 3cue_C Transport protein parti 99.8 2E-20 6.8E-25 147.7 7.5 134 1-153 2-156 (159)
6 3cue_A Transport protein parti 99.4 6.6E-13 2.2E-17 109.7 11.7 74 63-152 122-217 (219)
7 2j3t_D Trafficking protein par 65.7 1.1 3.7E-05 36.7 -0.4 41 3-43 4-46 (219)
8 2vgl_S AP-2 complex subunit si 43.4 91 0.0031 22.5 10.3 73 1-87 1-73 (142)
9 1w63_Q Adapter-related protein 26.8 1.9E+02 0.0065 21.3 10.5 73 1-87 1-73 (158)
10 2vgl_M AP-2 complex subunit MU 25.6 3.2E+02 0.011 23.4 10.3 71 1-87 1-71 (435)
11 2wx3_A MRNA-decapping enzyme 1 21.4 34 0.0012 21.7 1.1 16 97-113 29-44 (51)
12 2wx4_A DCP1, decapping protein 21.3 27 0.00092 21.8 0.6 15 97-112 27-41 (46)
No 1
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=237.04 Aligned_cols=111 Identities=16% Similarity=0.257 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCeeEEEcCCCcc----cchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEE-ecC
Q 030884 3 ACVAVVGHQNNPLYIQSFTEAD----DALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL-TNT 77 (170)
Q Consensus 3 ~~~aIIG~~d~PLy~~~f~~~~----~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vygyv-T~t 77 (170)
.|+||||++|+|||++.+++.+ ++|++||++|+|||+|||++..+ .+.+ .++|||+|+++|+++||||+ |||
T Consensus 11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~--~s~~-~~~~LglL~~~e~~~VYGy~iTnt 87 (162)
T 3pr6_A 11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEW--HSLD-SKPLLKSIFQLEGVSVFAMLIKQT 87 (162)
T ss_dssp SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCC--CCSS-SSCCCEEEEEETTEEEEEEECTTT
T ss_pred eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhc--cccc-cccccceEeecCCeEEEEEEEcCC
Confidence 4899999999999999998763 56999999999999999999321 1112 35899999999999999997 999
Q ss_pred ceEEEEEEcCC---CCCc--hhhhhhhhhhhhhhhhhhhhccccc
Q 030884 78 KVKFILVTTDL---DVRD--ADVRNEVPCCIYRCRFKPISRAWKK 117 (170)
Q Consensus 78 ~iKfVll~~~~---~~~d--~~Ik~fF~e~V~elYvk~l~NPF~~ 117 (170)
|+|||++++++ +.+| ++||+||++ ||++|+|++||||++
T Consensus 88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~-vh~~Yvk~l~NPFy~ 131 (162)
T 3pr6_A 88 GLKIVIGFEQKSLSGADDEFEAINQIFET-VRKIYIRVKCNPLLV 131 (162)
T ss_dssp CCEEEEEEEGGGCCCCHHHHHHHHHHHHH-HHHHHHHHHTCTTGG
T ss_pred ceEEEEEEccCCcccccchHHHHHHHHHH-HHHHHHHHhcCCCCC
Confidence 99999999874 4678 899999997 999999999999977
No 2
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.97 E-value=3.4e-32 Score=210.89 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=110.9
Q ss_pred EEEEEEEcCCCCeeEEEcCCCcc-----cc--hhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEE
Q 030884 2 IACVAVVGHQNNPLYIQSFTEAD-----DA--LKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL 74 (170)
Q Consensus 2 i~~~aIIG~~d~PLy~~~f~~~~-----~~--l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vygyv 74 (170)
++|++|||++|+|||++++++.. ++ +.+||++|++||++|++.|. ++++|||.+|+++++++|||+
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~-------~~~~~l~~~~~~~~y~v~~~~ 78 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-------SNNMYLKTVDKFNEWFVSAFV 78 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-------CSCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC-------CCcceeEeeecccceEEEEEE
Confidence 48999999999999999998752 12 44589999999999999985 268999999999999999999
Q ss_pred ecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhccccccccch
Q 030884 75 TNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLL 154 (170)
Q Consensus 75 T~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
|+||+|||++++.+ ++++||++|++ +|++|++.+||||+. +++ || .|.+|+..|+-.+++++
T Consensus 79 T~tg~Kfvl~~d~~--~~~~i~~~~~~-iy~~Y~~~v~NPfy~---------~~~---pI---~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 79 TAGHMRFIMLHDVR--QEDGIKNFFTD-VYDLYIKFAMNPFYE---------PNS---PI---RSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CTTCCEEEEEESSC--CHHHHHHHHHH-HHHHHHHHHHSTTCC---------TTC---CC---CCHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEeCCC--CcHHHHHHHHH-HHHHHHHHhcCCCCC---------CCC---ce---ecHHHHHHHHHHHHHhc
Confidence 99999999999873 69999999997 999999999888854 333 67 78899999888777765
No 3
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.92 E-value=6.9e-25 Score=170.66 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=103.3
Q ss_pred CEEEEEEEcCCCCeeEEEcCCCc-------ccchhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEE
Q 030884 1 MIACVAVVGHQNNPLYIQSFTEA-------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG 72 (170)
Q Consensus 1 Mi~~~aIIG~~d~PLy~~~f~~~-------~~~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vyg 72 (170)
|+.|++|||++|+|||+++++.. +++.++ ++++|+..|++++..|.. +..++..+ ++++++++|
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~-------~~~~~~~~-~t~~ykl~~ 73 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLD-------MKDGFLSF-QTSRYKLHY 73 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSC-------CSSCEEEE-ECSSCEEEE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCC-------CCCceEEE-ecCCEEEEE
Confidence 47899999999999999999753 233444 889999888888887742 34567666 899999999
Q ss_pred EEecCceEEEEEEcCCCCCchhhhhhhhhhhh-hhhhh-hhhcccccCcccccccccCCCCcchhhhhhHHHhhcccccc
Q 030884 73 YLTNTKVKFILVTTDLDVRDADVRNEVPCCIY-RCRFK-PISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNL 150 (170)
Q Consensus 73 yvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~-elYvk-~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
|+|+||+|||++++. ++++||++|++ +| |+|++ +++|||+. ++. || .|.+||..|+-.+
T Consensus 74 ~~T~TgiKFvl~td~---~~~~i~~~l~~-iy~~lYv~~v~kNPfy~---------~~~---pI---~s~~Fd~~v~~~~ 134 (145)
T 2j3t_C 74 YETPTGIKVVMNTDL---GVGPIRDVLHH-IYSALYVEFVVKNPLCP---------LGQ---TV---QSELFRSRLDSYV 134 (145)
T ss_dssp EECTTSCEEEEEECT---TCCCCHHHHHH-HHHTTHHHHTTTCTTSC---------TTS---CC---CCHHHHHHHHHHH
T ss_pred EEcCCCCEEEEEecC---CcchHHHHHHH-HHHHHHHHHHhcCCCCC---------CCC---ce---ecHHHHHHHHHHH
Confidence 999999999999986 68889999997 99 99999 55588854 333 67 7888998888777
Q ss_pred ccch
Q 030884 151 LNLL 154 (170)
Q Consensus 151 ~~~~ 154 (170)
+++.
T Consensus 135 ~~~~ 138 (145)
T 2j3t_C 135 RSLP 138 (145)
T ss_dssp TTST
T ss_pred HhCc
Confidence 7654
No 4
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.83 E-value=3.4e-21 Score=159.35 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=95.8
Q ss_pred EEEcCCCCeeEEEcCCCc-cc--chhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceEEE
Q 030884 6 AVVGHQNNPLYIQSFTEA-DD--ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI 82 (170)
Q Consensus 6 aIIG~~d~PLy~~~f~~~-~~--~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iKfV 82 (170)
.|+|++|+|||++.+.+. ++ .+.+..++| |||.|++++|... +...+ ....++++++|||+|+||+|||
T Consensus 85 ~iigk~N~PLyir~f~~~l~sn~~L~lag~lh-SLd~i~~klsp~~------~s~g~-~~~~T~~ykl~~y~T~TgiKFV 156 (219)
T 2j3t_D 85 YLGNPANYPVSIRFGRPRLTSNEKLMLASMFH-SLFAIGSQLSPEQ------GSSGI-EMLETDTFKLHCYQTLTGIKFV 156 (219)
T ss_dssp HTTCGGGCSEEEEEECCCCCHHHHHHHHHHHH-HHHHHHHHTCSSS------SCCSC-SEEEESSCEEEEEECTTSCEEE
T ss_pred eeecCCCCceEEEecCCCCChhHHHHHHHHHH-HHHHHHHHhCCCC------CCCCe-eEEecCceEEEEEEcCCCCEEE
Confidence 578999999999999876 22 244466999 9999999998521 12233 3446899999999999999999
Q ss_pred EEEcCCCCCchhhhhhhhhhhhhhhhhh-hhcccccCcccccccccCCCCcchhhhhhHHHhhccccccccch
Q 030884 83 LVTTDLDVRDADVRNEVPCCIYRCRFKP-ISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLL 154 (170)
Q Consensus 83 ll~~~~~~~d~~Ik~fF~e~V~elYvk~-l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
++++. +++++|++|++ +|++|++. ++|||+. ++. || .|.+|++.|+-.++++.
T Consensus 157 Lltd~---~~~~ir~~l~~-IyelYvd~V~kNPFY~---------~~~---pI---~s~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 157 VLADP---RQAGIDSLLRK-IYEIYSDFALKNPFYS---------LEM---PI---RCELFDQNLKLALEVAE 210 (219)
T ss_dssp EEECT---TCCCHHHHHHH-HHHHHHHHHTTCTTCC---------TTS---CC---CCHHHHHHHHHHHHHHT
T ss_pred EEecC---CchHHHHHHHH-HHHHHHHHhccCCCCC---------CCC---cc---chHHHHHHHHHHHHHhh
Confidence 99986 69999999997 99999996 4487754 333 56 78888888887766544
No 5
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-20 Score=147.70 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=95.2
Q ss_pred CEEEEEEEcCCCCeeEEEcCCCc-------------ccchhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccC
Q 030884 1 MIACVAVVGHQNNPLYIQSFTEA-------------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTE 66 (170)
Q Consensus 1 Mi~~~aIIG~~d~PLy~~~f~~~-------------~~~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e 66 (170)
|+.||.|||++++|||.+++... +++.++ ..++|+..+++++..|.. ..+.| ...+++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~------~~~~f--~~~~T~ 73 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGS------VKNDI--RSISTG 73 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSS------SCCCE--EEEECS
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCC------CCCCe--EEEeeC
Confidence 46899999999999999999531 334666 445555444444443321 13455 567789
Q ss_pred CeEEEEEEecCceEEEEEEcCCCCCchhhhhhhhhhhhh-hhhh-hhhcc-----cccCcccccccccCCCCcchhhhhh
Q 030884 67 NYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYR-CRFK-PISRA-----WKKDNIQNICRESKHHSQVIWVEFS 139 (170)
Q Consensus 67 ~~~VygyvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~e-lYvk-~l~NP-----F~~~~i~np~f~~~~~~~~~~~~~~ 139 (170)
+|++|||+|+||+|||++++. +++++|++|++ +|+ +|++ +++|| |+.---.| ......|| .|
T Consensus 74 ~ykl~~~eT~TgiKFvl~td~---~~~~i~~~l~~-iy~~lYv~yv~kNPl~~~~Fy~~~~~~----~~~~~~pI---~s 142 (159)
T 3cue_C 74 KYRVHTYCTASGLWFVLLSDF---KQQSYTQVLQY-IYSHIYVKYVSNNLLSPYDFAENENEM----RGQGTRKI---TN 142 (159)
T ss_dssp SCBEEEECCSSCCEEEEECCS---SSSCTHHHHHH-HHHHHHHHHHHSCTTSCCSCCCSCTTT----TTSCCCCC---CC
T ss_pred CEEEEEEEeCCCCEEEEEeCC---CcchHHHHHHH-HHHHHHHHHHHhCCCcccccccccccc----ccccCcCc---cc
Confidence 999999999999999999986 68999999997 998 9999 77999 64311111 11223477 78
Q ss_pred HHHhhccccccccc
Q 030884 140 WLIAAGVRLNLLNL 153 (170)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (170)
.+|+..|+--++++
T Consensus 143 ~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 143 RNFISVLESFLAPM 156 (159)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999887666554
No 6
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.6e-13 Score=109.73 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=57.7
Q ss_pred cccCCeEEEEEEecCceEEEEEEcCCC---------------------CCchhhhhhhhhhhhhhhhhhhh-cccccCcc
Q 030884 63 YPTENYKVYGYLTNTKVKFILVTTDLD---------------------VRDADVRNEVPCCIYRCRFKPIS-RAWKKDNI 120 (170)
Q Consensus 63 d~~e~~~VygyvT~t~iKfVll~~~~~---------------------~~d~~Ik~fF~e~V~elYvk~l~-NPF~~~~i 120 (170)
...++|++|||+|+||+|||++|+... ++|++||+||++ |||+|+|.+| |||+.
T Consensus 122 ~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~-VYelYvd~VmkNPFY~--- 197 (219)
T 3cue_A 122 LCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRK-VYCLYSDYVMKDPSYS--- 197 (219)
T ss_dssp EEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHH-HHHHHHHHHHSCTTCC---
T ss_pred EEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHH-HHHHHHHHHhcCCCCC---
Confidence 446889999999999999999998742 113899999997 9999999554 88854
Q ss_pred cccccccCCCCcchhhhhhHHHhhcccccccc
Q 030884 121 QNICRESKHHSQVIWVEFSWLIAAGVRLNLLN 152 (170)
Q Consensus 121 ~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
++. +| .|-+|+..|+-.+++
T Consensus 198 ------~~~---pI---~S~~Fd~~V~~~~~~ 217 (219)
T 3cue_A 198 ------MEM---PI---RSNLFDEKVKKMVEN 217 (219)
T ss_dssp ------TTS---CC---CCHHHHHHHHHHHHH
T ss_pred ------CCC---cc---ccHHHHHHHHHHHHh
Confidence 333 56 777888877766554
No 7
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=65.69 E-value=1.1 Score=36.65 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCeeEEEcCCCc--ccchhhhHHHHhhhhhhhhh
Q 030884 3 ACVAVVGHQNNPLYIQSFTEA--DDALKLHHIVHCSLDVVDER 43 (170)
Q Consensus 3 ~~~aIIG~~d~PLy~~~f~~~--~~~l~~qfi~haSLDiiEe~ 43 (170)
..+=|++|...-||-++-... +-+..+.+=+-..|+..|++
T Consensus 4 y~~yi~~~~~~liy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 46 (219)
T 2j3t_D 4 FSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDER 46 (219)
T ss_dssp EEEEEECTTSCEEEEEECC----CEEEEECSSCSSEEEECSSS
T ss_pred EEEEEEecCCceEEecccCCCCcceeeeccCCcceeeeeccce
Confidence 458899999999998776532 21222333333444444444
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=43.41 E-value=91 Score=22.53 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=42.7
Q ss_pred CEEEEEEEcCCCCeeEEEcCCCcccchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceE
Q 030884 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (170)
Q Consensus 1 Mi~~~aIIG~~d~PLy~~~f~~~~~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iK 80 (170)
|+.++.|++++++|+..+-+.+.....+-. ..+.+-.+.... +. ...++ -..++ ..+-|....++=
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~-----~~~~f~~~v~~~-~~---~~~~~----~~~~~-~~~vy~~~~~Ly 66 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQK-----LIEEVHAVVTVR-DA---KHTNF----VEFRN-FKIIYRRYAGLY 66 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHH-----HHHHHHHHHHTC-CT---TSCSE----EEETT-EEEEEEEETTEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHH-----HHHHHHHHHhcC-CC---CCCCE----EEECC-EEEEEEEECCEE
Confidence 899999999999999999997432211111 122233333321 00 01112 22334 345678888998
Q ss_pred EEEEEcC
Q 030884 81 FILVTTD 87 (170)
Q Consensus 81 fVll~~~ 87 (170)
|+++.+.
T Consensus 67 fv~~~~~ 73 (142)
T 2vgl_S 67 FCICVDV 73 (142)
T ss_dssp EEEEECT
T ss_pred EEEEeCC
Confidence 8888865
No 9
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=26.84 E-value=1.9e+02 Score=21.29 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=41.8
Q ss_pred CEEEEEEEcCCCCeeEEEcCCCcccchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceE
Q 030884 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (170)
Q Consensus 1 Mi~~~aIIG~~d~PLy~~~f~~~~~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iK 80 (170)
|+.++-|++++.+|+..+-+.+.....+.++. +-+-.+..... . ...+++ ..++ ..+-|+...++=
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~-----~~~~~~i~~~~-~---~~~~~i----~~~~-~~~vy~~~~~Ly 66 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMV-----RELMQVVLARK-P---KMCSFL----EWRD-LKVVYKRYASLY 66 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHH-----HHHHHHHHTSC-S---SSCSEE----EETT-EEEEEEEETTEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHH-----HHHHHHHhccC-C---CCCCeE----EECC-EEEEEEEECCEE
Confidence 89999999999999999999764221111111 11112222110 0 011222 2334 345678888998
Q ss_pred EEEEEcC
Q 030884 81 FILVTTD 87 (170)
Q Consensus 81 fVll~~~ 87 (170)
|+++.+.
T Consensus 67 fv~~~~~ 73 (158)
T 1w63_Q 67 FCCAIEG 73 (158)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 8888875
No 10
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=25.55 E-value=3.2e+02 Score=23.36 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=45.4
Q ss_pred CEEEEEEEcCCCCeeEEEcCCCcccchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceE
Q 030884 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (170)
Q Consensus 1 Mi~~~aIIG~~d~PLy~~~f~~~~~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iK 80 (170)
||.++-|++++.++++.+.|...-. . ..++.+...+...... . ...+...++ .-+-|+...++=
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~-------~~~~~f~~~v~~~~~~----~---~~~ii~~~~-~~~vy~~~~~Ly 64 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG-R-------NAVDAFRVNVIHARQQ----V---RSPVTNIAR-TSFFHVKRSNIW 64 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC-H-------HHHHHHHHHTTTCSSC----C---CCSEEEETT-EEEEEEEETTEE
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC-h-------hHHHHHHHHHhccccC----C---CCCEEEECC-EEEEEEEECCEE
Confidence 8889999999999999999975311 1 2245566555432110 0 111222344 356678888999
Q ss_pred EEEEEcC
Q 030884 81 FILVTTD 87 (170)
Q Consensus 81 fVll~~~ 87 (170)
|+++.+.
T Consensus 65 fv~~~~~ 71 (435)
T 2vgl_M 65 LAAVTKQ 71 (435)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9999875
No 11
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=21.36 E-value=34 Score=21.73 Aligned_cols=16 Identities=0% Similarity=0.139 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhhhhhhc
Q 030884 97 NEVPCCIYRCRFKPISR 113 (170)
Q Consensus 97 ~fF~e~V~elYvk~l~N 113 (170)
.|-+. +||+|++.+..
T Consensus 29 ~Fl~~-IHeAYl~sl~~ 44 (51)
T 2wx3_A 29 SFLST-LHEVYLQVLTK 44 (51)
T ss_dssp HHHHH-HHHHHHHTTC-
T ss_pred HHHHH-HHHHHHHHHHH
Confidence 46775 99999986643
No 12
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=21.33 E-value=27 Score=21.77 Aligned_cols=15 Identities=7% Similarity=-0.049 Sum_probs=9.8
Q ss_pred hhhhhhhhhhhhhhhh
Q 030884 97 NEVPCCIYRCRFKPIS 112 (170)
Q Consensus 97 ~fF~e~V~elYvk~l~ 112 (170)
.|-++ +||+|++.+.
T Consensus 27 ~Fl~~-iHeAYl~sl~ 41 (46)
T 2wx4_A 27 EFANK-LHKAYLNGCS 41 (46)
T ss_dssp THHHH-HHHHHHC---
T ss_pred HHHHH-HHHHHHHHHH
Confidence 56775 9999998654
Done!