BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030888
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6FJB0|CLU_CANGA Clustered mitochondria protein homolog OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CLU1 PE=3 SV=1
Length = 1267
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 81 IVGRSSATTFADTFEKQEAVLRCLGAFDPNGENL--QVSQKQEAAKQCNCTIAEVEN--- 135
I+ + ADTF K +R LG F NL + +KQE A + V+N
Sbjct: 677 IISPYNGEHLADTFHKNGVNMRYLGKF----ANLVKEELRKQEEAHEAKLAQVIVDNKEY 732
Query: 136 ------TLAKF-TWAKEAQKKIEKLKEEGKPMPKSMAE 166
L K T KE Q KI KL +EGK +PK + E
Sbjct: 733 EEWEKSYLQKIETMIKERQAKINKLVQEGKEVPKELTE 770
>sp|Q7T3Q2|CRIM1_DANRE Cysteine-rich motor neuron 1 protein OS=Danio rerio GN=crim1 PE=2
SV=1
Length = 1027
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 75 GTLKQYIVGRSSATTFADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVE 134
G++ QY VG + D + LG F+P ENL V+ +C C
Sbjct: 93 GSITQYEVGNCEDENWDDD--------QLLG-FEPCNENL-VTGCNIIDGKCECDSVRTC 142
Query: 135 NTLAKFTWAKEAQKKIEKLKEEGKPMPKSMAEVQF 169
N +F + Q ++K++EE K+ EVQF
Sbjct: 143 NNPFEFASQEACQTALQKIEEERPDCSKARCEVQF 177
>sp|Q09332|UGGG_DROME UDP-glucose:glycoprotein glucosyltransferase OS=Drosophila
melanogaster GN=Ugt PE=1 SV=2
Length = 1548
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 25 FTTRTLQGSWMDSIKGVFTGKKSSSEDGSVSSESFTLLRFADELKKARKLGTLKQYIVGR 84
+ R + + MD++K F GKKS+ G S + T+ FAD L T + GR
Sbjct: 720 LSNRDMTATLMDNLK-YFGGKKSTELIGRASLQFLTIWVFAD-------LETDQ----GR 767
Query: 85 SSATTFADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAK---FT 141
T D + E+V R AF PN E+ S ++ + + + T A
Sbjct: 768 DLLTHALDYVQSGESV-RV--AFIPNTESSSASSRRNLNRLVWAAMQSLPPTQATEQVLK 824
Query: 142 WAKEAQKKIE 151
W K+ ++KIE
Sbjct: 825 WLKKPKEKIE 834
>sp|Q03690|CLU_YEAST Clustered mitochondria protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CLU1 PE=1 SV=1
Length = 1277
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 68 LKKARKLGTLKQYIVGRSSATT----FADTFEKQEAVLRCLGAF------DPNGENLQVS 117
L+K ++ Y+ G S ADT K +R LG + + + +
Sbjct: 670 LQKEVIPSVIQDYLSGNLSTPYNGEHLADTLHKNGINMRYLGKIIELSQKELDSQIVHYE 729
Query: 118 QKQEAAKQCN--------CTIAEVENTLAKFTWAKEAQKKIEKLKEEGKPMPKSMAE 166
Q +A +Q N + ++EN + KE Q KI KL +EGK +PK + E
Sbjct: 730 QNLKAVEQDNKEYEDWEKSYLQKIENMI------KERQAKINKLVQEGKEVPKELTE 780
>sp|Q8CDN9|LRRC9_MOUSE Leucine-rich repeat-containing protein 9 OS=Mus musculus GN=Lrrc9
PE=2 SV=2
Length = 1456
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 12 HNHHLTLSQYRSIFTTRTLQGSWMDSIKGVFTGKKSSSEDGSVSSESFTLLRFADELKKA 71
HNH +TL +R + + L SW KK+ E + + +LL +
Sbjct: 737 HNHVITLEGFRGLMKLKHLDLSWNQL-------KKTGEEINVLCKHTTSLLTLDIQHNPW 789
Query: 72 RKLGTLKQYIVGRSSATTFAD 92
+K TL+ ++GR T D
Sbjct: 790 QKPATLRLSVIGRLKTLTHLD 810
>sp|Q6ZRR7|LRRC9_HUMAN Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9
PE=2 SV=2
Length = 1453
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 12 HNHHLTLSQYRSIFTTRTLQGSWMDSIKGVFTGKKSSSEDGSVSSESFTLLRFADELKKA 71
HNH +TL +R + + L SW KKS +E + + +LL +
Sbjct: 747 HNHVITLEGFRGLMKLKHLDLSWNQL-------KKSGNEINMLCKHTTSLLTLDIQHNPW 799
Query: 72 RKLGTLKQYIVGRSSATTFAD 92
+K TL+ ++GR T +
Sbjct: 800 QKPATLRLSVIGRLKTLTHLN 820
>sp|A7FMM5|OTC_YERP3 Ornithine carbamoyltransferase OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=argI PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 55 SSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
+E LL A ELKK +K G +Q +VG++ A FEK RC + A+D
Sbjct: 17 PAEIIALLDLATELKKDKKSGCEQQKLVGKNIAL----IFEKDSTRTRCSFEVAAYD 69
>sp|Q66F14|OTC_YERPS Ornithine carbamoyltransferase OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=argI PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 55 SSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
+E LL A ELKK +K G +Q +VG++ A FEK RC + A+D
Sbjct: 17 PAEIIALLDLATELKKDKKSGCEQQKLVGKNIAL----IFEKDSTRTRCSFEVAAYD 69
>sp|A4TQQ1|OTC_YERPP Ornithine carbamoyltransferase OS=Yersinia pestis (strain Pestoides
F) GN=argI PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 55 SSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
+E LL A ELKK +K G +Q +VG++ A FEK RC + A+D
Sbjct: 17 PAEIIALLDLATELKKDKKSGCEQQKLVGKNIAL----IFEKDSTRTRCSFEVAAYD 69
>sp|Q1CM06|OTC_YERPN Ornithine carbamoyltransferase OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=argI PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 55 SSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
+E LL A ELKK +K G +Q +VG++ A FEK RC + A+D
Sbjct: 17 PAEIIALLDLATELKKDKKSGCEQQKLVGKNIAL----IFEKDSTRTRCSFEVAAYD 69
>sp|Q8ZBG8|OTC_YERPE Ornithine carbamoyltransferase OS=Yersinia pestis GN=argI PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 55 SSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
+E LL A ELKK +K G +Q +VG++ A FEK RC + A+D
Sbjct: 17 PAEIIALLDLATELKKDKKSGCEQQKLVGKNIAL----IFEKDSTRTRCSFEVAAYD 69
>sp|Q8ZK35|OTCC_SALTY Ornithine carbamoyltransferase, catabolic OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=arcB PE=3 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 61 LLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
L+ A ELK A+K G KQ ++G++ A FEK RC + AFD
Sbjct: 24 LIDLAIELKAAKKAGCEKQTLIGKNIAL----IFEKTSTRTRCAFEVAAFD 70
>sp|Q8Z127|OTCC_SALTI Ornithine carbamoyltransferase, catabolic OS=Salmonella typhi
GN=arcB PE=3 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 61 LLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRC---LGAFD 108
L+ A ELK A+K G KQ ++G++ A FEK RC + AFD
Sbjct: 24 LIDLAIELKAAKKAGCEKQTLIGKNIAL----IFEKTSTRTRCAFEVAAFD 70
>sp|Q8VW55|OTCC_OENOE Ornithine carbamoyltransferase, catabolic OS=Oenococcus oeni
GN=arcB PE=3 SV=1
Length = 351
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 38 IKGVFTGKKSSSEDGSVSSESFTLLRFADELKKARKLGTLKQYIVGRSSATTFADT 93
+ VF G+ +E E L+ FA LK +KLG +Y+ G++ A F T
Sbjct: 14 VNSVFQGRSLLAEKDFTPMELEYLIDFALHLKALKKLGISHRYLEGKNIALLFEKT 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,020,266
Number of Sequences: 539616
Number of extensions: 1926167
Number of successful extensions: 6577
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6568
Number of HSP's gapped (non-prelim): 32
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)