Query 030888
Match_columns 170
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 09:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqe_A SRP54, signal recogniti 98.0 2.2E-06 7.7E-11 65.2 2.2 93 57-151 8-113 (119)
2 1hq1_A Signal recognition part 97.6 9.4E-05 3.2E-09 55.2 5.7 91 58-150 1-103 (105)
3 1mfq_C SRP54, signal recogniti 97.4 0.0001 3.4E-09 57.0 4.0 94 57-150 13-122 (129)
4 1qb2_A SRP54, human signal rec 97.3 0.00014 4.7E-09 54.5 3.7 90 58-147 1-106 (109)
5 3dm5_A SRP54, signal recogniti 97.2 0.00054 1.9E-08 60.5 6.8 101 57-164 326-438 (443)
6 2ffh_A Protein (FFH); SRP54, s 97.2 0.0011 3.7E-08 57.9 7.9 95 58-154 319-420 (425)
7 2j37_W Signal recognition part 96.9 0.00013 4.4E-09 65.0 -0.3 133 32-165 301-451 (504)
8 3kl4_A SRP54, signal recogniti 96.9 0.00071 2.4E-08 59.3 4.1 116 33-150 300-432 (433)
9 2xxa_A Signal recognition part 95.6 0.013 4.6E-07 50.7 5.2 91 58-150 328-430 (433)
10 2v3c_C SRP54, signal recogniti 94.7 0.022 7.6E-07 49.3 3.8 88 57-146 323-422 (432)
11 1dul_A Signal recognition part 94.2 0.1 3.4E-06 36.4 5.6 56 92-149 10-68 (69)
12 1fi6_A EH domain protein REPS1 80.6 9.6 0.00033 24.9 8.4 67 98-166 9-87 (92)
13 1qbj_A Protein (double-strande 76.6 3.4 0.00012 28.5 4.2 52 90-158 5-56 (81)
14 2k9l_A RNA polymerase sigma fa 70.4 3.8 0.00013 27.7 3.2 36 103-140 37-72 (76)
15 1iq3_A Ralbp1-interacting prot 62.7 12 0.00042 25.9 4.6 60 104-165 28-99 (110)
16 1c07_A Protein (epidermal grow 58.4 36 0.0012 22.3 8.1 66 100-166 12-89 (95)
17 2jq6_A EH domain-containing pr 53.7 66 0.0022 23.9 7.8 64 100-166 53-128 (139)
18 1vp7_A Exodeoxyribonuclease VI 53.3 23 0.00079 26.2 4.9 53 86-154 28-85 (100)
19 2isb_A Fumarase, FUM-1; NP_069 52.9 7.5 0.00026 31.8 2.5 23 143-165 47-69 (192)
20 2k9m_A RNA polymerase sigma fa 47.9 16 0.00055 27.1 3.4 17 95-111 54-70 (130)
21 1xmk_A Double-stranded RNA-spe 47.1 28 0.00097 24.1 4.4 48 91-158 7-55 (79)
22 1qgp_A Protein (double strande 40.5 54 0.0018 21.8 4.8 49 93-158 12-60 (77)
23 3f1i_S STAM-1, signal transduc 36.9 52 0.0018 23.5 4.5 47 95-141 5-51 (77)
24 2heo_A Z-DNA binding protein 1 35.0 57 0.0019 20.9 4.1 44 96-158 11-54 (67)
25 2hgk_A Hypothetical protein YQ 34.0 21 0.00072 26.9 2.2 69 88-165 5-74 (117)
26 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 32.0 56 0.0019 26.2 4.5 45 60-104 6-50 (267)
27 2kgr_A Intersectin-1; structur 31.5 1.2E+02 0.0042 20.5 9.3 66 100-167 16-93 (111)
28 3e7l_A Transcriptional regulat 28.4 1.1E+02 0.0038 19.1 5.5 40 92-140 17-56 (63)
29 2wqt_A 2-keto-4-pentenoate hyd 28.0 64 0.0022 25.9 4.2 45 60-104 6-50 (270)
30 3mq9_A Bone marrow stromal ant 28.0 34 0.0012 28.5 2.6 76 77-156 361-451 (471)
31 3pqk_A Biofilm growth-associat 27.6 1.2E+02 0.0041 19.8 4.9 11 147-157 54-64 (102)
32 1juo_A Sorcin; calcium-binding 27.4 1.6E+02 0.0055 20.6 6.6 58 83-140 88-148 (198)
33 2dsy_A Hypothetical protein TT 25.9 56 0.0019 22.3 3.1 33 129-163 42-74 (87)
34 1fc3_A SPO0A; response regulat 24.8 36 0.0012 25.4 2.0 43 120-162 52-103 (120)
35 2lk2_A Homeobox protein TGIF1; 24.0 1.2E+02 0.0042 21.5 4.6 38 114-157 33-72 (89)
36 1tc3_C Protein (TC3 transposas 23.7 45 0.0015 18.0 1.9 22 119-140 24-45 (51)
37 1eh2_A EPS15; calcium binding, 22.3 1.9E+02 0.0066 19.7 9.0 64 101-166 18-92 (106)
38 3ni0_A Bone marrow stromal ant 21.6 1.1E+02 0.0038 22.9 4.1 37 120-156 38-75 (99)
39 3mq7_A Bone marrow stromal ant 21.6 66 0.0022 24.9 2.9 34 120-156 45-79 (121)
40 2lnb_A Z-DNA-binding protein 1 21.4 52 0.0018 23.8 2.2 45 96-159 20-64 (80)
41 3sxm_A Transcriptional regulat 21.2 83 0.0028 21.1 3.2 46 87-138 93-138 (140)
42 2dmn_A Homeobox protein TGIF2L 20.9 1.2E+02 0.0041 20.2 3.9 32 114-151 35-66 (83)
43 1k94_A Grancalcin; penta-EF-ha 20.9 2E+02 0.0067 19.3 6.5 48 93-140 65-115 (165)
44 1gjy_A Sorcin, CP-22, V19; cal 20.4 2E+02 0.007 19.3 6.2 49 92-140 66-117 (167)
No 1
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=97.98 E-value=2.2e-06 Score=65.15 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHHhHHhccccchh---c-cccc------hhhHHHHHHHHHHHHHHHh---ccCCCCcccchhhHHHHH
Q 030888 57 ESFTLLRFADELKKARKLGTLKQYI---V-GRSS------ATTFADTFEKQEAVLRCLG---AFDPNGENLQVSQKQEAA 123 (170)
Q Consensus 57 ~~ftL~~FADelkkARr~Gsfk~fv---~-Grss------eat~~~afeK~EaiiR~L~---~~DptGE~l~asqk~~aA 123 (170)
+.|||+.|.+-|..-+++|++.+.+ - |-+. ..--...|.++|+||...- .-+| +.|..|-|.+.|
T Consensus 8 g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P--~ii~~SR~~RIA 85 (119)
T 2jqe_A 8 GTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNP--KIIDSSRIRRIA 85 (119)
T ss_dssp CSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCG--GGCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhCh--hhcCHHHHHHHH
Confidence 4799999999999999999998875 3 4321 1112357999999994321 1144 477899999999
Q ss_pred hhcCccHHHHHHHHHHhHhHHHHHHHHH
Q 030888 124 KQCNCTIAEVENTLAKFTWAKEAQKKIE 151 (170)
Q Consensus 124 k~CnCTiadVE~~LAKftWaKeA~kKi~ 151 (170)
+-+|+++.||...|..|...+.+-|++.
T Consensus 86 ~GSG~~v~eVn~LLkqf~~m~kmmk~m~ 113 (119)
T 2jqe_A 86 IGSGTSPQEVKELLNYYKTMKNLMKKMK 113 (119)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998887766553
No 2
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=97.60 E-value=9.4e-05 Score=55.18 Aligned_cols=91 Identities=20% Similarity=0.350 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHhHHhccccchhc---cccc--h----hhHHHHHHHHHHHHHHHh---ccCCCCcccchhhHHHHHhh
Q 030888 58 SFTLLRFADELKKARKLGTLKQYIV---GRSS--A----TTFADTFEKQEAVLRCLG---AFDPNGENLQVSQKQEAAKQ 125 (170)
Q Consensus 58 ~ftL~~FADelkkARr~Gsfk~fv~---Grss--e----at~~~afeK~EaiiR~L~---~~DptGE~l~asqk~~aAk~ 125 (170)
.|||+.|-+-|..-+++|++.+.+- |-+. . .--...|.++|+||...- .-+| +.|..|-|.+.|+-
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P--~ii~~SR~~RIA~G 78 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAAG 78 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhCh--hhcCHHHHHHHHcc
Confidence 4999999999999999999988643 4221 1 011346889999993221 1144 47889999999999
Q ss_pred cCccHHHHHHHHHHhHhHHHHHHHH
Q 030888 126 CNCTIAEVENTLAKFTWAKEAQKKI 150 (170)
Q Consensus 126 CnCTiadVE~~LAKftWaKeA~kKi 150 (170)
+|.++.||...|..|.=.+.+-|++
T Consensus 79 SG~~v~eVn~LLkqf~~m~kmmk~m 103 (105)
T 1hq1_A 79 SGMQVQDVNRLLKQFDDMQRMMKKM 103 (105)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998776666554
No 3
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=97.44 E-value=0.0001 Score=57.04 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=68.5
Q ss_pred ccchHHHHHHHHHHhHHhccccchhc---cccc-------hhhHHHHHHHHHHHHHHHh--ccCCC--Cccc--chhhHH
Q 030888 57 ESFTLLRFADELKKARKLGTLKQYIV---GRSS-------ATTFADTFEKQEAVLRCLG--AFDPN--GENL--QVSQKQ 120 (170)
Q Consensus 57 ~~ftL~~FADelkkARr~Gsfk~fv~---Grss-------eat~~~afeK~EaiiR~L~--~~Dpt--GE~l--~asqk~ 120 (170)
+.|||+.|-+-|..-+++|++.+.+- |-+. +.--...|.++|+||...- -.|-+ .+.| ..|-|.
T Consensus 13 g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk~ 92 (129)
T 1mfq_C 13 GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQ 92 (129)
T ss_dssp SSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHHHH
Confidence 57999999999999999999987642 4321 1112456888888884321 11211 2466 689999
Q ss_pred HHHhhcCccHHHHHHHHHHhHhHHHHHHHH
Q 030888 121 EAAKQCNCTIAEVENTLAKFTWAKEAQKKI 150 (170)
Q Consensus 121 ~aAk~CnCTiadVE~~LAKftWaKeA~kKi 150 (170)
++|+-+|.++.||...|..|.=.+.+=|++
T Consensus 93 RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm 122 (129)
T 1mfq_C 93 RVARGSGVSTRDVQELLTQYTKFAQMVKKM 122 (129)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999997666555544
No 4
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=97.35 E-value=0.00014 Score=54.52 Aligned_cols=90 Identities=14% Similarity=0.273 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHhHHhccccchhc---cccc-------hhhHHHHHHHHHHHHHHHhc--c-CCC-Ccccc--hhhHHH
Q 030888 58 SFTLLRFADELKKARKLGTLKQYIV---GRSS-------ATTFADTFEKQEAVLRCLGA--F-DPN-GENLQ--VSQKQE 121 (170)
Q Consensus 58 ~ftL~~FADelkkARr~Gsfk~fv~---Grss-------eat~~~afeK~EaiiR~L~~--~-Dpt-GE~l~--asqk~~ 121 (170)
.|||+.|-+-|..-+++|++.+.+- |-+. ..--...|.++|+||...-. . +.+ .+.|. .|-|.+
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 4999999999999999999987642 4221 11124578889999832211 1 101 24666 789999
Q ss_pred HHhhcCccHHHHHHHHHHhHhHHHHH
Q 030888 122 AAKQCNCTIAEVENTLAKFTWAKEAQ 147 (170)
Q Consensus 122 aAk~CnCTiadVE~~LAKftWaKeA~ 147 (170)
.|+-+|.++.||...|..|.=.+.+-
T Consensus 81 IA~GSG~~v~eVn~LLkqf~~m~kmm 106 (109)
T 1qb2_A 81 VARGSGVSTRDVQELLTQYTKFAQMV 106 (109)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997655543
No 5
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.23 E-value=0.00054 Score=60.50 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=68.5
Q ss_pred ccchHHHHHHHHHHhHHhccccchh---ccccc------hhhHHHHHHHHHHHHHHHh---ccCCCCcccchhhHHHHHh
Q 030888 57 ESFTLLRFADELKKARKLGTLKQYI---VGRSS------ATTFADTFEKQEAVLRCLG---AFDPNGENLQVSQKQEAAK 124 (170)
Q Consensus 57 ~~ftL~~FADelkkARr~Gsfk~fv---~Grss------eat~~~afeK~EaiiR~L~---~~DptGE~l~asqk~~aAk 124 (170)
+.|||+.|-+.|++-+++|++++.+ -|-+. +.--..-|.++|+||...- .-+| +-|..|-|.+.|+
T Consensus 326 ~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p--~~~~~sr~~ria~ 403 (443)
T 3dm5_A 326 GKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNP--EIINYSRIKRIAR 403 (443)
T ss_dssp TCCCHHHHHHHHHHHHTTCC-------------------CCCCHHHHHHHHHHHTTSCHHHHHCG--GGCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCHHHHHHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCc--hhcChHHHHHHHc
Confidence 5799999999999999999999874 23221 1122568889999993221 1355 5778999999999
Q ss_pred hcCccHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCCCcc
Q 030888 125 QCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGKPMPKSM 164 (170)
Q Consensus 125 ~CnCTiadVE~~LAKftWaKeA~kKi~KLkeEGKPlPks~ 164 (170)
-+|.++.||...|..|.=++.+-|++ + |.-||+=|
T Consensus 404 gsg~~~~~v~~ll~~~~~~~~~~~~~---~--~~~~~~~~ 438 (443)
T 3dm5_A 404 GSGTSTKDVKELLDQYRQMKKLFKSM---N--KRQLSRLA 438 (443)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHTC---C--SCCCC---
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH---c--CCCHHHHH
Confidence 99999999999999998666665555 3 23566544
No 6
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=0.0011 Score=57.89 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=72.1
Q ss_pred cchHHHHHHHHHHhHHhccccchhc---cccchh-hHHHHHHHHHHHHHHHh---ccCCCCcccchhhHHHHHhhcCccH
Q 030888 58 SFTLLRFADELKKARKLGTLKQYIV---GRSSAT-TFADTFEKQEAVLRCLG---AFDPNGENLQVSQKQEAAKQCNCTI 130 (170)
Q Consensus 58 ~ftL~~FADelkkARr~Gsfk~fv~---Grssea-t~~~afeK~EaiiR~L~---~~DptGE~l~asqk~~aAk~CnCTi 130 (170)
.|||+.|-+.|+..+++|.|.+.+- |-+... --..-|.++|+||...- .-+ .+.+..|-|.+.|+-+|.++
T Consensus 319 ~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~~~~~~~~~~~~~~~i~~smt~~e~~~--p~~~~~sr~~ria~gsg~~~ 396 (425)
T 2ffh_A 319 ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRLEAIVLSMTPEERKD--PRILNGSRRKRIAKGSGTSV 396 (425)
T ss_dssp CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSCCTTSCHHHHHHHHHHHHTSCHHHHHC--GGGCCHHHHHHHHHHHTSCH
T ss_pred hcCHHHHHHHHHHhhCcCChhhhhccCCCchhhccccHHHHHHHHHHHHcCCHHHhcC--ccccChHHHHHHHccCCCCH
Confidence 7999999999999999999877543 432211 12567999999994321 114 34788999999999999999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHH
Q 030888 131 AEVENTLAKFTWAKEAQKKIEKLK 154 (170)
Q Consensus 131 adVE~~LAKftWaKeA~kKi~KLk 154 (170)
.||...|..|.=++.+-|++.+.+
T Consensus 397 ~~v~~ll~~~~~~~~~~~~~~~~~ 420 (425)
T 2ffh_A 397 QEVNRFIKAFEEMKALMKSLEKKK 420 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999987777766665433
No 7
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.90 E-value=0.00013 Score=64.98 Aligned_cols=133 Identities=16% Similarity=0.266 Sum_probs=88.3
Q ss_pred chhhhhhhcccccCCCCCCCCCCCCccchHHHHHHHHHHhHHhccccchh---ccccch-------hhHHHHHHHHHHHH
Q 030888 32 GSWMDSIKGVFTGKKSSSEDGSVSSESFTLLRFADELKKARKLGTLKQYI---VGRSSA-------TTFADTFEKQEAVL 101 (170)
Q Consensus 32 ~sW~dkiKgvftG~K~~~~~~~~~~~~ftL~~FADelkkARr~Gsfk~fv---~Grsse-------at~~~afeK~Eaii 101 (170)
.+++++|..+.. ...+....-...+.|||+.|-+.|..+.++|++++.+ -|-+.. .--.+-+.+.++||
T Consensus 301 ~~Lie~i~e~~~-~~~~~l~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii 379 (504)
T 2j37_W 301 EGLIDKVNELKL-DDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379 (504)
T ss_dssp TTTHHHHTTTTT-CCCTTTTTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHH
Confidence 466777776621 1111111222345899999999999999999998753 243221 11246788899999
Q ss_pred HHHhcc---CCC-Cccc--chhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHHh--cCCCCCCccc
Q 030888 102 RCLGAF---DPN-GENL--QVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKE--EGKPMPKSMA 165 (170)
Q Consensus 102 R~L~~~---Dpt-GE~l--~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLke--EGKPlPks~~ 165 (170)
+..-.. +.. .+.| ..|-+.+.|+-++.++.||...|..|.=++.+-|++.+++. .|.+|++.++
T Consensus 380 ~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (504)
T 2j37_W 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVS 451 (504)
T ss_dssp TTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHH
T ss_pred HhCCHHHhcCCCCCcccCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhh
Confidence 743221 211 2466 68899999999999999999999999888777776654332 2455776553
No 8
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.87 E-value=0.00071 Score=59.29 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=74.0
Q ss_pred hhhhhhhcccccCCCCCCCCCCCCc--cchHHHHHHHHHHhHHhccccchh---ccccchhh---------HHHHHHHHH
Q 030888 33 SWMDSIKGVFTGKKSSSEDGSVSSE--SFTLLRFADELKKARKLGTLKQYI---VGRSSATT---------FADTFEKQE 98 (170)
Q Consensus 33 sW~dkiKgvftG~K~~~~~~~~~~~--~ftL~~FADelkkARr~Gsfk~fv---~Grsseat---------~~~afeK~E 98 (170)
+-++++..++--.+.......-..+ .|||+.|-+-|++-+++|++++.+ -|-+.... -..-|.+++
T Consensus 300 ~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~ 379 (433)
T 3kl4_A 300 SILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWL 379 (433)
T ss_dssp HHHHHHHHC-------------------CCHHHHHHHHHHHHHCCSSSGGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCccccccchhhhhhhhHHHHHHHH
Confidence 3455555555433322111122335 899999999999999999999875 33221111 123567889
Q ss_pred HHHHHHhc---cCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHH
Q 030888 99 AVLRCLGA---FDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKI 150 (170)
Q Consensus 99 aiiR~L~~---~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi 150 (170)
+||...-. -+| +-|..|-|.+.|+-+|.++.||...|..|.=++.+-|++
T Consensus 380 ~ii~smt~~e~~~p--~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 432 (433)
T 3kl4_A 380 AALNSMTYKELENP--NIIDKSRMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMV 432 (433)
T ss_dssp HHHHSSCSSTTTCG--GGCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHhhCc--hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99955432 345 567899999999999999999999999998766665553
No 9
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.64 E-value=0.013 Score=50.67 Aligned_cols=91 Identities=20% Similarity=0.370 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHHhHHhccccchhc---cccch-hhH-----HHHHHHHHHHHHHH---hccCCCCcccchhhHHHHHhh
Q 030888 58 SFTLLRFADELKKARKLGTLKQYIV---GRSSA-TTF-----ADTFEKQEAVLRCL---GAFDPNGENLQVSQKQEAAKQ 125 (170)
Q Consensus 58 ~ftL~~FADelkkARr~Gsfk~fv~---Grsse-at~-----~~afeK~EaiiR~L---~~~DptGE~l~asqk~~aAk~ 125 (170)
.||++.|-+-|+.+.++|.|.+.+- |-+.- ..+ .+.+.+.++||... -.-+| +.+..|-+.+.|+-
T Consensus 328 ~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~--~~~~~sr~~ria~g 405 (433)
T 2xxa_A 328 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAAG 405 (433)
T ss_dssp SCCHHHHHHHHHHHHSCSSCHHHHCC---------------CHHHHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhhhhhhccccHHHHHHHHHHHHcCCHHHhcCc--cccCHHHHHHHHcc
Confidence 6999999999999999999977543 32210 011 23467777877511 11133 35678999999999
Q ss_pred cCccHHHHHHHHHHhHhHHHHHHHH
Q 030888 126 CNCTIAEVENTLAKFTWAKEAQKKI 150 (170)
Q Consensus 126 CnCTiadVE~~LAKftWaKeA~kKi 150 (170)
+|.++.||...|..|.=++.+-|++
T Consensus 406 sg~~~~~v~~l~~~~~~~~~~~~~~ 430 (433)
T 2xxa_A 406 SGMQVQDVNRLLKQFDDMQRMMKKM 430 (433)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998666665554
No 10
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.69 E-value=0.022 Score=49.27 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHHHhHHhccccchh---ccccchh---hH---HHHHHHHHHHHH---HHhccCCCCcccchhhHHHHHh
Q 030888 57 ESFTLLRFADELKKARKLGTLKQYI---VGRSSAT---TF---ADTFEKQEAVLR---CLGAFDPNGENLQVSQKQEAAK 124 (170)
Q Consensus 57 ~~ftL~~FADelkkARr~Gsfk~fv---~Grssea---t~---~~afeK~EaiiR---~L~~~DptGE~l~asqk~~aAk 124 (170)
+.||++.|-+.|...+++|++++.+ -|-+... .+ .+-+-+.++||. .--.-+|. .+..|-+.+.|+
T Consensus 323 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~--~i~~sr~~rI~~ 400 (432)
T 2v3c_C 323 GKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPK--IIKASRIRRIAR 400 (432)
T ss_dssp SCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCT--TCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcc--ccCHHHHHHHHh
Confidence 5799999999999999999988743 3422110 01 123444555553 01111244 678899999999
Q ss_pred hcCccHHHHHHHHHHhHhHHHH
Q 030888 125 QCNCTIAEVENTLAKFTWAKEA 146 (170)
Q Consensus 125 ~CnCTiadVE~~LAKftWaKeA 146 (170)
-++.++.||...|..|.=++.+
T Consensus 401 gsg~~~~~v~~ll~~~~~~~~~ 422 (432)
T 2v3c_C 401 GSGTTENDVREVLRYYETTKNA 422 (432)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999755444
No 11
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=94.25 E-value=0.1 Score=36.44 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHh---ccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHH
Q 030888 92 DTFEKQEAVLRCLG---AFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKK 149 (170)
Q Consensus 92 ~afeK~EaiiR~L~---~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kK 149 (170)
.-|.++++||...- .-+ .+.|..|-|.+.|+-+|.++.||...|..|.=.+.+-|+
T Consensus 10 ~~lkr~~aII~SMT~~Er~n--P~ii~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~ 68 (69)
T 1dul_A 10 KVLVRMEAIINSMTMKERAK--PEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKK 68 (69)
T ss_dssp CHHHHHHHHHHTSCHHHHHC--GGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHhC--ccccCHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35788999993221 114 347888999999999999999999999999766555443
No 12
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=80.64 E-value=9.6 Score=24.91 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHhccCCCCc-ccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCccc
Q 030888 98 EAVLRCLGAFDPNGE-NLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMA 165 (170)
Q Consensus 98 EaiiR~L~~~DptGE-~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~ 165 (170)
+.+.+....||..|. .|...+=..+-..++.+..+++.++..+ .+..-++ .+ .....|.|+|.++-
T Consensus 9 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~-~~-~~~~~g~~lp~~lp 86 (92)
T 1fi6_A 9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFH-LV-VARKNGYDLPEKLP 86 (92)
T ss_dssp HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHH-HH-HHHHHSCCCCCCSC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HH-HHHHcCCCCCccCC
Confidence 344556677777554 3666566666666777877888776653 2333332 22 34467999999874
Q ss_pred c
Q 030888 166 E 166 (170)
Q Consensus 166 E 166 (170)
.
T Consensus 87 ~ 87 (92)
T 1fi6_A 87 E 87 (92)
T ss_dssp S
T ss_pred H
Confidence 3
No 13
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.58 E-value=3.4 Score=28.50 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHHhcCC
Q 030888 90 FADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGK 158 (170)
Q Consensus 90 ~~~afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLkeEGK 158 (170)
++-.=+.++.||.+|-. ++.|+.+.+ .+.|+.+|.+-..|. +.|.+|+++|.
T Consensus 5 ~s~~~~~~~~IL~~L~~-~~pg~~~t~---~eLA~~Lgvsr~tV~-------------~~L~~Le~~G~ 56 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEE-LGEGKATTA---HDLSGKLGTPKKEIN-------------RVLYSLAKKGK 56 (81)
T ss_dssp -CHHHHHHHHHHHHHHH-HCTTCCBCH---HHHHHHHTCCHHHHH-------------HHHHHHHHTTS
T ss_pred cccchHHHHHHHHHHHH-cCCCCCcCH---HHHHHHHCcCHHHHH-------------HHHHHHHHCCC
Confidence 33344567889999984 455777766 578899998876665 45667777775
No 14
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=70.36 E-value=3.8 Score=27.65 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.1
Q ss_pred HHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHh
Q 030888 103 CLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKF 140 (170)
Q Consensus 103 ~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKf 140 (170)
-.+.+|..| -|.. .-.+.|..++++..+||.+|...
T Consensus 37 iI~~LD~~G-YL~~-~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 37 LLNYLNEKG-FLSK-SVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHCTTSS-TTCC-CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHhcCCCC-CCCC-CHHHHHHHcCCCHHHHHHHHHHH
Confidence 347899999 6655 45688999999999999999753
No 15
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=62.66 E-value=12 Score=25.93 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=30.1
Q ss_pred HhccCCCCc-ccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCccc
Q 030888 104 LGAFDPNGE-NLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMA 165 (170)
Q Consensus 104 L~~~DptGE-~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~ 165 (170)
...||..|. .|...+=..+-..++.+-.+|+.++..+ .+..-++. + .+...|.|+|.++-
T Consensus 28 F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~-~-~~~~~G~~lP~~LP 99 (110)
T 1iq3_A 28 FRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHL-I-VARKNGYPLPEGLP 99 (110)
T ss_dssp HHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHH-H-HHHHHTCCCCCCSS
T ss_pred HHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH-H-HHHHcCCCCCcccC
Confidence 334444332 3444444444444555555566555433 23333332 2 33457999998864
No 16
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=58.45 E-value=36 Score=22.29 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=36.7
Q ss_pred HHHHHhccCCCCc-ccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCcccc
Q 030888 100 VLRCLGAFDPNGE-NLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMAE 166 (170)
Q Consensus 100 iiR~L~~~DptGE-~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~E 166 (170)
+.+....||..|. .|...+=..+-...+.+-.+|+.++..+ .+..-+ ..+..-...|.|+|.++-.
T Consensus 12 ~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~-~~~~~~~~~g~~lP~~lP~ 89 (95)
T 1c07_A 12 YDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF-HLISQKLIKGIDPPHVLTP 89 (95)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHH-HHHHHHHTSCCCCCSSCCT
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHH-HHHHHHHHcCCCCCCcCCc
Confidence 3344455565443 3555555555556677777777776654 232222 2222222689999998743
No 17
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=53.73 E-value=66 Score=23.90 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHhccC-CCCcccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCcccc
Q 030888 100 VLRCLGAFD-PNGENLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMAE 166 (170)
Q Consensus 100 iiR~L~~~D-ptGE~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~E 166 (170)
+......|| -+| .|...+=..+-...+.+-.+|+.++... .+..-++ +-.++..|.|+|.++-.
T Consensus 53 l~~~F~~fDd~dG-~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~--li~~~~~G~~lP~~LP~ 128 (139)
T 2jq6_A 53 YDEIFYTLSPVNG-KITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANH--LIKVKLEGHELPADLPP 128 (139)
T ss_dssp HHHHHHHSCCSSS-EEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHH--HHHHHHTTSCCCSCCCT
T ss_pred HHHHHHHhCCCCC-eECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HHHHHHcCCCCCcccCc
Confidence 333344445 334 5666666666677888888888887643 2343343 23566789999998754
No 18
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=53.30 E-value=23 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCCcccchhhH-----HHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHH
Q 030888 86 SATTFADTFEKQEAVLRCLGAFDPNGENLQVSQK-----QEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLK 154 (170)
Q Consensus 86 seat~~~afeK~EaiiR~L~~~DptGE~l~asqk-----~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLk 154 (170)
.+.||..|+++-|.|++-|-.=|-+ |..+-+ ...+++|+- +-.+|.+||++|.
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~gel~---LEesl~lyeeG~~L~k~C~~-------------~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGTLP---LEQSLSAYRRGVELARVCQD-------------RLAQAEQQVKVLE 85 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHh
Confidence 4678999999999999999754422 323222 244555643 4556777888884
No 19
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=52.89 E-value=7.5 Score=31.82 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCccc
Q 030888 143 AKEAQKKIEKLKEEGKPMPKSMA 165 (170)
Q Consensus 143 aKeA~kKi~KLkeEGKPlPks~~ 165 (170)
--.||+||.++-++|+|||-.|.
T Consensus 47 RDaAHkRl~e~l~~Ge~lP~dl~ 69 (192)
T 2isb_A 47 RDEAHARALEWMEEGKELPFSFD 69 (192)
T ss_dssp CHHHHHHHHHHHHHTCCCSSCCT
T ss_pred hHHHHHHHHHHHHcCCCCCcCCC
Confidence 34699999999999999997664
No 20
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=47.94 E-value=16 Score=27.12 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhccCCCC
Q 030888 95 EKQEAVLRCLGAFDPNG 111 (170)
Q Consensus 95 eK~EaiiR~L~~~DptG 111 (170)
+.-|+|++.+-.|||.|
T Consensus 54 ~eve~vL~~iQ~~dP~G 70 (130)
T 2k9m_A 54 EELEKVRQKVLRLEPLG 70 (130)
T ss_dssp HHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 34556666666666665
No 21
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=47.08 E-value=28 Score=24.06 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHH-HHHHHHHHhHhHHHHHHHHHHHHhcCC
Q 030888 91 ADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIA-EVENTLAKFTWAKEAQKKIEKLKEEGK 158 (170)
Q Consensus 91 ~~afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTia-dVE~~LAKftWaKeA~kKi~KLkeEGK 158 (170)
.+--+-++.||.||-...|. .-.+.|+.|+-|.. .|.. -+.+|.+||.
T Consensus 7 ~~~~~~~~~IL~~Lk~~g~~-------ta~eiA~~Lgit~~~aVr~-------------hL~~Le~eGl 55 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVSDS-------SALNLAKNIGLTKARDINA-------------VLIDMERQGD 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCE-------EHHHHHHHHCGGGHHHHHH-------------HHHHHHHTTS
T ss_pred ccchhHHHHHHHHHHHcCCc-------CHHHHHHHcCCCcHHHHHH-------------HHHHHHHCCC
Confidence 34446799999999998853 34688999998877 6654 4556666664
No 22
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=40.52 E-value=54 Score=21.80 Aligned_cols=49 Identities=14% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHHhcCC
Q 030888 93 TFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGK 158 (170)
Q Consensus 93 afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLkeEGK 158 (170)
.-+.+..||.+|...- .|+.+.+ .+.|+.+|.+-..|.. .|.+|+++|.
T Consensus 12 ~~~~~~~IL~~L~~~~-~~~~~t~---~eLA~~Lgvs~~tV~~-------------~L~~L~~~G~ 60 (77)
T 1qgp_A 12 YQDQEQRILKFLEELG-EGKATTA---HDLSGKLGTPKKEINR-------------VLYSLAKKGK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHC-SSSCEEH---HHHHHHHCCCHHHHHH-------------HHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHcC-CCCCcCH---HHHHHHHCcCHHHHHH-------------HHHHHHHCCC
Confidence 3345678988887654 3555555 6789999988776654 4556766664
No 23
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=36.93 E-value=52 Score=23.48 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhH
Q 030888 95 EKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFT 141 (170)
Q Consensus 95 eK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKft 141 (170)
+|...-|+.|...||+|+.-.+..=...-..|+---.-|+.-|.++.
T Consensus 5 ~kmd~~L~~l~~aDP~~~~~D~~el~~LE~~c~~MgplId~kLE~iD 51 (77)
T 3f1i_S 5 DKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDID 51 (77)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999977776766777777766666666666654
No 24
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.00 E-value=57 Score=20.85 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHHhcCC
Q 030888 96 KQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGK 158 (170)
Q Consensus 96 K~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLkeEGK 158 (170)
..+.||..|.. + |..+.. .+.|+.+|.+-..|. +-|+.|+++|-
T Consensus 11 ~~~~IL~~L~~-~--~~~~s~---~eLA~~lglsr~tv~-------------~~l~~L~~~G~ 54 (67)
T 2heo_A 11 LEQKILQVLSD-D--GGPVAI---FQLVKKCQVPKKTLN-------------QVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHHHHH-H--CSCEEH---HHHHHHHCSCHHHHH-------------HHHHHHHHTTS
T ss_pred HHHHHHHHHHH-c--CCCcCH---HHHHHHHCcCHHHHH-------------HHHHHHHHCCc
Confidence 46789999986 3 334544 568999999866554 55667888875
No 25
>2hgk_A Hypothetical protein YQCC; helical bundle, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.29.17.1
Probab=34.02 E-value=21 Score=26.88 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHH-HHHHHHHHHhcCCCCCCccc
Q 030888 88 TTFADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKE-AQKKIEKLKEEGKPMPKSMA 165 (170)
Q Consensus 88 at~~~afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKe-A~kKi~KLkeEGKPlPks~~ 165 (170)
..+...+..-|+.+|.++.-..+ .-....=+...-=| -|+|+=-.|-.= ---||..|-+.|.|||.+|+
T Consensus 5 ~~~~~~L~~LE~~Lr~~~lWq~~--~Ps~eAl~S~ePF~-------vDTm~~~qWLQwIFIPRM~alie~~~pLP~~~a 74 (117)
T 2hgk_A 5 DRVRLQLQALEALLREHQHWRND--EPQPHQFNSTQPFF-------MDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFA 74 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC--CCCGGGTTTCCSSC-------TTTSCTHHHHTTTHHHHHHHHHHTTCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHhCccCCC--CCCHHHHcCCCCcc-------cccCCHHHHHHHHHHHHHHHHHHCCCCCCcccc
Confidence 34667778888888888876522 21121111111122 134444445432 23588899999999999885
No 26
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=31.97 E-value=56 Score=26.17 Aligned_cols=45 Identities=22% Similarity=0.139 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhHHhccccchhccccchhhHHHHHHHHHHHHHHH
Q 030888 60 TLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRCL 104 (170)
Q Consensus 60 tL~~FADelkkARr~Gsfk~fv~Grsseat~~~afeK~EaiiR~L 104 (170)
+++..|+.|-.||+-|.--.=+.++....|+.+|..=|.++++.+
T Consensus 6 ~~~~~A~~L~~A~~~~~~i~~l~~~~~~~~~~dAyaiQ~~~~~~~ 50 (267)
T 2eb4_A 6 THTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQREWVRLK 50 (267)
T ss_dssp HHHHHHHHHHHHHHHTCCBCCHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999876433345555689999999999999765
No 27
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=31.48 E-value=1.2e+02 Score=20.49 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHHHhccCCCCc-ccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCccccc
Q 030888 100 VLRCLGAFDPNGE-NLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMAEV 167 (170)
Q Consensus 100 iiR~L~~~DptGE-~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~Ev 167 (170)
+.+....||.+|. .|...+=..+-...+.+-.+|+.++..+ .|..-+. .+ ....+|.++|.++-.-
T Consensus 16 l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~-~~-~~~~~G~~lp~~lp~~ 93 (111)
T 2kgr_A 16 YRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMH-LI-DVAMSGQPLPPVLPPE 93 (111)
T ss_dssp HHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHH-HH-HHHHTTCCCCSSCCGG
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHH-HH-HHHHCCCCCccccCcc
Confidence 3344445554432 2444444444444455556666655443 2333332 22 2346799999987643
No 28
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.43 E-value=1.1e+02 Score=19.07 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHh
Q 030888 92 DTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKF 140 (170)
Q Consensus 92 ~afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKf 140 (170)
+.||+ +.|.+.|...+ | .+.+||+..|.+-.-+-.-|.||
T Consensus 17 ~~~E~-~~i~~aL~~~~--g------n~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 17 KEFEK-IFIEEKLREYD--Y------DLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHH-HHHHHHHHHTT--T------CHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHhC--C------CHHHHHHHHCcCHHHHHHHHHHh
Confidence 34554 45778888887 4 35688999999877776666555
No 29
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=27.97 E-value=64 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhHHhccccchhccccchhhHHHHHHHHHHHHHHH
Q 030888 60 TLLRFADELKKARKLGTLKQYIVGRSSATTFADTFEKQEAVLRCL 104 (170)
Q Consensus 60 tL~~FADelkkARr~Gsfk~fv~Grsseat~~~afeK~EaiiR~L 104 (170)
+++..|+.|-.||+-|.--.=+.++....|+.+|..=|.++++.+
T Consensus 6 ~~~~~A~~L~~A~~~~~~i~~l~~~~~~~~~~dAYaiQ~~~~~~~ 50 (270)
T 2wqt_A 6 TLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHD 50 (270)
T ss_dssp HHHHHHHHHHHHHHHTCCBCCSHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999876333344445689999999999999765
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.95 E-value=34 Score=28.50 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=44.7
Q ss_pred ccchhcccc-chhhHHHHHHHHHHHHHHHhcc--------------CCCCcccchhhHHHHHhhcCccHHHHHHHHHHhH
Q 030888 77 LKQYIVGRS-SATTFADTFEKQEAVLRCLGAF--------------DPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFT 141 (170)
Q Consensus 77 fk~fv~Grs-seat~~~afeK~EaiiR~L~~~--------------DptGE~l~asqk~~aAk~CnCTiadVE~~LAKft 141 (170)
+.+++.|.. .+..+.++-++.+++|.-+... |-.-.++....+ -|..||-|+--+-+.|-|=.
T Consensus 361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 361 VINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA--QAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH--HhhhcchhHHHHHHHHHHHH
Confidence 344566753 3556666666666666333221 211123322222 26679999998888887643
Q ss_pred hHHHHHHHHHHHHhc
Q 030888 142 WAKEAQKKIEKLKEE 156 (170)
Q Consensus 142 WaKeA~kKi~KLkeE 156 (170)
-++++||++|..|
T Consensus 439 --~~~~~~~~~~~~~ 451 (471)
T 3mq9_A 439 --AQGQKKVEELEGE 451 (471)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3477899988765
No 31
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.58 E-value=1.2e+02 Score=19.80 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC
Q 030888 147 QKKIEKLKEEG 157 (170)
Q Consensus 147 ~kKi~KLkeEG 157 (170)
.+.+.+|++.|
T Consensus 54 s~~L~~L~~~G 64 (102)
T 3pqk_A 54 SQQLGVLRESG 64 (102)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 44566666665
No 32
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=27.42 E-value=1.6e+02 Score=20.62 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=38.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHhccCCCCc-ccchhhHHHHHhhcC--ccHHHHHHHHHHh
Q 030888 83 GRSSATTFADTFEKQEAVLRCLGAFDPNGE-NLQVSQKQEAAKQCN--CTIAEVENTLAKF 140 (170)
Q Consensus 83 Grsseat~~~afeK~EaiiR~L~~~DptGE-~l~asqk~~aAk~Cn--CTiadVE~~LAKf 140 (170)
|.-+-..|...+...+.+.+....+|..|. .|...+=..+-..++ .+-.+|+.++..+
T Consensus 88 g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~ 148 (198)
T 1juo_A 88 GTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148 (198)
T ss_dssp SCEEHHHHHHHHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred CeECHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344455666777777788888888987765 466666556655555 5667777777665
No 33
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=25.93 E-value=56 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCCCc
Q 030888 129 TIAEVENTLAKFTWAKEAQKKIEKLKEEGKPMPKS 163 (170)
Q Consensus 129 TiadVE~~LAKftWaKeA~kKi~KLkeEGKPlPks 163 (170)
.-..+|++++.-.-|-+.+ ++-+.++|.|+|.-
T Consensus 42 ~G~T~eEA~~~a~eAl~~~--le~~~e~g~~iP~p 74 (87)
T 2dsy_A 42 TGKSLKECEANLQAALEDW--LLFLLSRGETPPPL 74 (87)
T ss_dssp EESSHHHHHHHHHHHHHHH--HHHHHHTTCCCCCB
T ss_pred eeCCHHHHHHHHHHHHHHH--HHHHHHCCCCCCCC
Confidence 3345777777665555554 77899999999864
No 34
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=24.76 E-value=36 Score=25.42 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=31.6
Q ss_pred HHHHhhcCccHHHHHHHHH---HhHhHHHHHHHHHHHH------hcCCCCCC
Q 030888 120 QEAAKQCNCTIAEVENTLA---KFTWAKEAQKKIEKLK------EEGKPMPK 162 (170)
Q Consensus 120 ~~aAk~CnCTiadVE~~LA---KftWaKeA~kKi~KLk------eEGKPlPk 162 (170)
-.+|+++++|...||.+|. ...|.+--...++++- +.|||-+.
T Consensus 52 p~IA~k~~TT~s~VEraIR~aIe~aw~~g~~~~l~~ifg~t~~~~~~kPTns 103 (120)
T 1fc3_A 52 PDIAKKYNTTASRVERAIRHAIEVAWSRGNLESISSLFGYTVSVSKAKPTNS 103 (120)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHSSCTTTTHHHHCHHHHTCSSCCCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCcccCCCCCCHH
Confidence 5789999999999999986 4678774444466664 36776543
No 35
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=23.98 E-value=1.2e+02 Score=21.53 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=29.3
Q ss_pred cchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHH--HHhcC
Q 030888 114 LQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEK--LKEEG 157 (170)
Q Consensus 114 l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~K--LkeEG 157 (170)
....+|.+.|..+|-|..+|.+ |-.-+.+|+.+ +.++|
T Consensus 33 Ps~~ek~~LA~~tgLt~~QV~~------WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 33 PSEQEKALLSQQTHLSTLQVCN------WFINARRRLLPDMLRKDG 72 (89)
T ss_dssp CCHHHHHHHHHHSSSCHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHCcCHHHHHH------HHHHHHHHhhhHHHHhcC
Confidence 3478999999999999999998 76666666644 44544
No 36
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.65 E-value=45 Score=17.96 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=18.3
Q ss_pred HHHHHhhcCccHHHHHHHHHHh
Q 030888 119 KQEAAKQCNCTIAEVENTLAKF 140 (170)
Q Consensus 119 k~~aAk~CnCTiadVE~~LAKf 140 (170)
..++|+.+|+...-|.+.|.+|
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHCcCHHHHHHHHhhH
Confidence 4579999999999898877665
No 37
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=22.28 E-value=1.9e+02 Score=19.74 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=34.7
Q ss_pred HHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHh-----------HhHHHHHHHHHHHHhcCCCCCCcccc
Q 030888 101 LRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKF-----------TWAKEAQKKIEKLKEEGKPMPKSMAE 166 (170)
Q Consensus 101 iR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKf-----------tWaKeA~kKi~KLkeEGKPlPks~~E 166 (170)
......||+..-.|...+=..+-..++.+-.+|++++... .+..-++. + .+...|.|+|.++-.
T Consensus 18 ~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~-~-~~~~~g~~lP~~LP~ 92 (106)
T 1eh2_A 18 DAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFL-V-YCALEKEPVPMSLPP 92 (106)
T ss_dssp HHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHH-H-HHHHHTCCCCSSCCT
T ss_pred HHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH-H-HHHHcCCCCCCCCCc
Confidence 3444555652124555555555556666666666665432 23333332 2 444579999998753
No 38
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.59 E-value=1.1e+02 Score=22.95 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=29.1
Q ss_pred HHHHhhcCccHHHHHHHHHHh-HhHHHHHHHHHHHHhc
Q 030888 120 QEAAKQCNCTIAEVENTLAKF-TWAKEAQKKIEKLKEE 156 (170)
Q Consensus 120 ~~aAk~CnCTiadVE~~LAKf-tWaKeA~kKi~KLkeE 156 (170)
..-|.-||=|+-.+-+.|-|= +|..+.++++++|..|
T Consensus 38 eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgE 75 (99)
T 3ni0_A 38 ETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENE 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345678999999999998764 6777778888888766
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.58 E-value=66 Score=24.90 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHhhcCccHHHHHHHHHHh-HhHHHHHHHHHHHHhc
Q 030888 120 QEAAKQCNCTIAEVENTLAKF-TWAKEAQKKIEKLKEE 156 (170)
Q Consensus 120 ~~aAk~CnCTiadVE~~LAKf-tWaKeA~kKi~KLkeE 156 (170)
..-|.-||=|+-.+-..|-+= .|. |+++++|+.|
T Consensus 45 eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgE 79 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDAEKAQG---QKKVEELEGE 79 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344678999999999999873 332 6677777655
No 40
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.44 E-value=52 Score=23.81 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHHHHHhcCCC
Q 030888 96 KQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGKP 159 (170)
Q Consensus 96 K~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~KLkeEGKP 159 (170)
.-+.||..|.-- |+.+.+ .++|+.|+-.=-+|+ |-|.+||+|||-
T Consensus 20 ~eekVLe~Lkea---G~Plka---geIae~~GvdKKeVd-------------Kaik~LKkEgkI 64 (80)
T 2lnb_A 20 LEQRILQVLTEA---GSPVKL---AQLVKECQAPKRELN-------------QVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHH---TSCEEH---HHHHHHHTSCHHHHH-------------HHHHHHHHTTSE
T ss_pred HHHHHHHHHHHc---CCCCCH---HHHHHHHCCCHHHHH-------------HHHHHHHHcCCc
Confidence 356677777643 567777 467888887765554 556789999984
No 41
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=21.22 E-value=83 Score=21.08 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcccchhhHHHHHhhcCccHHHHHHHHH
Q 030888 87 ATTFADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAEVENTLA 138 (170)
Q Consensus 87 eat~~~afeK~EaiiR~L~~~DptGE~l~asqk~~aAk~CnCTiadVE~~LA 138 (170)
......+.+-|.+|+.+|..-||.+ ...-...|..-+...+...|.
T Consensus 93 ~~~~~~~~~eH~~I~~Ai~~~D~~~------A~~~~~~Hl~~~~~~~~~~l~ 138 (140)
T 3sxm_A 93 NERYVVSNREHKELIERIISGDKEG------AIEKLKEHLKNVEAETIKNLY 138 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHHHHHTTT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 4456778899999999999999552 344455566555555544443
No 42
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=20.92 E-value=1.2e+02 Score=20.20 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=25.9
Q ss_pred cchhhHHHHHhhcCccHHHHHHHHHHhHhHHHHHHHHH
Q 030888 114 LQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIE 151 (170)
Q Consensus 114 l~asqk~~aAk~CnCTiadVE~~LAKftWaKeA~kKi~ 151 (170)
+...+|.+.|..||.|..+|.+ |-.-+..|+.
T Consensus 35 Ps~~~r~~LA~~~gLs~~qV~~------WFqNrR~r~k 66 (83)
T 2dmn_A 35 PSEEEKQMLSEKTNLSLLQISN------WFINARRRIL 66 (83)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHH------HHHHHHHHTH
T ss_pred CCHHHHHHHHHHHCcCHHHhhH------HhhhhHhhhc
Confidence 4488999999999999999997 7666655543
No 43
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=20.90 E-value=2e+02 Score=19.29 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhccCCCCc-ccchhhHHHHHhhcC--ccHHHHHHHHHHh
Q 030888 93 TFEKQEAVLRCLGAFDPNGE-NLQVSQKQEAAKQCN--CTIAEVENTLAKF 140 (170)
Q Consensus 93 afeK~EaiiR~L~~~DptGE-~l~asqk~~aAk~Cn--CTiadVE~~LAKf 140 (170)
.+...+.+.+....+|..|. .|...+=..+-..++ .+-.+++.++..+
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33333445555556665543 344444444444444 3445555555544
No 44
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=20.39 E-value=2e+02 Score=19.31 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhccCCCCc-ccchhhHHHHHhhcC--ccHHHHHHHHHHh
Q 030888 92 DTFEKQEAVLRCLGAFDPNGE-NLQVSQKQEAAKQCN--CTIAEVENTLAKF 140 (170)
Q Consensus 92 ~afeK~EaiiR~L~~~DptGE-~l~asqk~~aAk~Cn--CTiadVE~~LAKf 140 (170)
..+...+.+.+....+|..|. .|...+=..+-..++ .+-.+++.++..|
T Consensus 66 ~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 66 ELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117 (167)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 333333455555566665543 344544444444443 4455666655544
Done!