Query 030889
Match_columns 169
No_of_seqs 124 out of 1041
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03758 proteasome_beta_type_2 100.0 1.7E-42 3.7E-47 261.6 20.5 155 1-155 36-191 (193)
2 cd03761 proteasome_beta_type_5 100.0 1.3E-41 2.8E-46 255.8 20.5 154 1-156 35-188 (188)
3 cd03759 proteasome_beta_type_3 100.0 2.1E-41 4.6E-46 256.0 19.9 153 1-154 38-191 (195)
4 cd03760 proteasome_beta_type_4 100.0 2.5E-40 5.5E-45 250.4 20.2 156 1-156 37-196 (197)
5 cd03750 proteasome_alpha_type_ 100.0 1.5E-40 3.3E-45 256.7 18.7 162 1-164 61-226 (227)
6 COG0638 PRE1 20S proteasome, a 100.0 1.5E-40 3.3E-45 257.7 18.5 161 1-162 65-227 (236)
7 cd03764 proteasome_beta_archea 100.0 5.2E-40 1.1E-44 247.0 20.7 154 1-156 35-188 (188)
8 cd03757 proteasome_beta_type_1 100.0 3E-40 6.5E-45 252.6 19.4 154 1-155 43-205 (212)
9 PTZ00488 Proteasome subunit be 100.0 3.2E-40 7E-45 257.3 19.1 161 1-163 74-234 (247)
10 TIGR03634 arc_protsome_B prote 100.0 1.4E-39 3E-44 244.0 20.2 150 1-152 36-185 (185)
11 TIGR03690 20S_bact_beta protea 100.0 6.8E-40 1.5E-44 251.8 18.4 164 1-164 37-211 (219)
12 cd03762 proteasome_beta_type_6 100.0 2.1E-39 4.5E-44 243.7 20.2 152 1-154 35-186 (188)
13 cd03763 proteasome_beta_type_7 100.0 4.3E-39 9.3E-44 242.3 20.0 154 1-157 35-188 (189)
14 PTZ00246 proteasome subunit al 100.0 2.3E-39 4.9E-44 253.8 18.8 164 1-164 66-238 (253)
15 cd03765 proteasome_beta_bacter 100.0 6.4E-39 1.4E-43 247.9 19.8 163 1-164 34-214 (236)
16 cd01912 proteasome_beta protea 100.0 1.6E-38 3.4E-43 238.9 20.1 154 1-155 35-188 (189)
17 TIGR03633 arc_protsome_A prote 100.0 1.2E-38 2.6E-43 245.7 20.0 157 1-159 63-224 (224)
18 PRK03996 proteasome subunit al 100.0 1.2E-38 2.7E-43 248.0 18.2 161 1-163 70-235 (241)
19 KOG0176 20S proteasome, regula 100.0 4E-39 8.6E-44 235.6 14.2 160 1-162 68-236 (241)
20 cd03752 proteasome_alpha_type_ 100.0 1.6E-37 3.4E-42 237.8 19.3 147 1-147 64-213 (213)
21 cd03749 proteasome_alpha_type_ 100.0 3.5E-37 7.5E-42 235.6 19.3 147 1-148 59-211 (211)
22 cd03755 proteasome_alpha_type_ 100.0 2.9E-37 6.2E-42 235.4 18.8 144 1-147 61-207 (207)
23 TIGR03691 20S_bact_alpha prote 100.0 2.1E-37 4.5E-42 238.9 17.6 163 1-163 54-227 (228)
24 cd03751 proteasome_alpha_type_ 100.0 5.8E-37 1.3E-41 234.4 19.1 146 1-147 64-212 (212)
25 cd03754 proteasome_alpha_type_ 100.0 9.1E-37 2E-41 233.9 18.6 146 1-147 63-215 (215)
26 cd03756 proteasome_alpha_arche 100.0 2.7E-36 5.9E-41 230.6 19.1 146 1-148 62-210 (211)
27 cd01911 proteasome_alpha prote 100.0 2.5E-36 5.4E-41 230.5 18.3 146 1-147 61-209 (209)
28 cd03753 proteasome_alpha_type_ 100.0 9.1E-36 2E-40 228.0 18.8 145 1-147 61-213 (213)
29 cd01906 proteasome_protease_Hs 100.0 1.6E-35 3.4E-40 220.9 18.9 147 1-147 35-182 (182)
30 PF00227 Proteasome: Proteasom 100.0 2E-35 4.3E-40 221.8 17.8 147 1-147 40-190 (190)
31 KOG0181 20S proteasome, regula 100.0 3E-36 6.5E-41 220.0 12.6 160 1-162 66-228 (233)
32 KOG0183 20S proteasome, regula 100.0 1.2E-35 2.6E-40 219.6 11.5 159 2-163 65-229 (249)
33 KOG0178 20S proteasome, regula 100.0 5.9E-34 1.3E-38 210.2 15.3 163 1-163 66-236 (249)
34 KOG0177 20S proteasome, regula 100.0 3.7E-33 8E-38 202.9 14.9 158 1-158 36-194 (200)
35 KOG0179 20S proteasome, regula 100.0 4.9E-33 1.1E-37 205.1 15.6 153 1-154 64-227 (235)
36 KOG0182 20S proteasome, regula 100.0 4.2E-33 9.1E-38 205.8 15.1 162 1-163 70-238 (246)
37 KOG0175 20S proteasome, regula 100.0 6E-33 1.3E-37 210.1 12.1 160 2-163 107-266 (285)
38 KOG0863 20S proteasome, regula 100.0 1.8E-31 3.9E-36 199.4 14.4 160 1-161 64-230 (264)
39 KOG0174 20S proteasome, regula 100.0 2.4E-31 5.2E-36 194.1 13.8 159 2-162 55-215 (224)
40 KOG0184 20S proteasome, regula 100.0 1.9E-31 4.2E-36 198.2 12.0 159 1-160 68-231 (254)
41 KOG0185 20S proteasome, regula 100.0 1E-29 2.2E-34 190.3 12.3 161 1-162 76-242 (256)
42 KOG0173 20S proteasome, regula 100.0 2.2E-28 4.7E-33 184.9 15.3 154 2-158 73-226 (271)
43 KOG0180 20S proteasome, regula 100.0 3.7E-28 8E-33 174.5 15.2 153 1-154 43-196 (204)
44 PRK05456 ATP-dependent proteas 99.9 2.7E-25 5.8E-30 164.4 14.2 131 1-146 36-171 (172)
45 cd01901 Ntn_hydrolase The Ntn 99.9 1.1E-24 2.4E-29 158.1 16.8 128 1-129 35-163 (164)
46 cd01913 protease_HslV Protease 99.9 1.2E-24 2.6E-29 160.2 14.7 131 1-146 35-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 6.3E-24 1.4E-28 156.4 13.9 131 1-146 35-170 (171)
48 COG5405 HslV ATP-dependent pro 99.0 3.8E-09 8.2E-14 76.0 10.6 131 4-148 43-176 (178)
49 COG3484 Predicted proteasome-t 98.8 1.6E-07 3.4E-12 70.1 12.0 147 7-154 45-205 (255)
50 PF09894 DUF2121: Uncharacteri 94.1 0.24 5.2E-06 37.2 6.5 51 100-150 130-180 (194)
51 KOG3361 Iron binding protein i 90.6 0.41 8.8E-06 33.8 3.6 43 80-122 71-113 (157)
52 COG4079 Uncharacterized protei 85.5 0.94 2E-05 35.4 3.1 129 32-161 36-194 (293)
53 COG3193 GlcG Uncharacterized p 68.0 17 0.00038 26.0 5.1 36 112-151 5-40 (141)
54 PRK09732 hypothetical protein; 66.4 19 0.00042 25.5 5.1 36 113-152 5-40 (134)
55 PF04312 DUF460: Protein of un 63.9 30 0.00064 24.7 5.6 39 66-104 32-70 (138)
56 cd06404 PB1_aPKC PB1 domain is 61.4 13 0.00028 24.1 3.2 46 111-162 16-63 (83)
57 PF08269 Cache_2: Cache domain 60.9 20 0.00043 23.2 4.2 40 113-157 33-72 (95)
58 PF03928 DUF336: Domain of unk 58.7 17 0.00037 25.3 3.8 38 113-154 1-38 (132)
59 PF07499 RuvA_C: RuvA, C-termi 54.9 8.1 0.00018 22.0 1.3 32 95-126 12-44 (47)
60 PF04539 Sigma70_r3: Sigma-70 49.7 42 0.00091 20.7 4.2 30 22-51 3-32 (78)
61 PF04485 NblA: Phycobilisome d 45.0 36 0.00077 20.1 3.0 23 113-135 20-42 (53)
62 PF14748 P5CR_dimer: Pyrroline 42.7 36 0.00077 22.9 3.2 39 95-133 12-54 (107)
63 PF01726 LexA_DNA_bind: LexA D 41.7 64 0.0014 19.7 3.9 22 29-50 15-36 (65)
64 PF11773 PulG: Type II secreto 41.3 57 0.0012 21.1 3.7 42 115-158 34-76 (82)
65 KOG0774 Transcription factor P 40.8 73 0.0016 25.4 4.9 52 9-62 96-147 (334)
66 PF08529 NusA_N: NusA N-termin 40.3 1.2E+02 0.0026 20.8 6.0 51 113-163 13-64 (122)
67 COG1754 Uncharacterized C-term 40.0 29 0.00062 27.9 2.6 72 68-144 77-151 (298)
68 PF14593 PH_3: PH domain; PDB: 38.4 35 0.00076 23.1 2.6 17 75-91 36-52 (104)
69 COG3140 Uncharacterized protei 37.0 69 0.0015 19.1 3.3 35 101-135 14-48 (60)
70 PRK14065 exodeoxyribonuclease 36.8 1.1E+02 0.0024 20.0 4.5 32 100-131 31-62 (86)
71 COG0822 IscU NifU homolog invo 36.2 1.4E+02 0.0031 21.5 5.6 55 77-132 43-98 (150)
72 PF11211 DUF2997: Protein of u 35.3 58 0.0013 18.7 2.8 32 80-111 3-34 (48)
73 cd04513 Glycosylasparaginase G 32.9 2E+02 0.0043 22.9 6.4 58 92-152 186-247 (263)
74 PF14134 DUF4301: Domain of un 32.6 87 0.0019 27.3 4.5 31 60-90 375-405 (513)
75 PF02609 Exonuc_VII_S: Exonucl 32.0 1.1E+02 0.0023 17.7 4.0 30 103-132 8-37 (53)
76 COG4537 ComGC Competence prote 31.8 1.1E+02 0.0023 20.8 3.9 27 19-45 50-77 (107)
77 PF01242 PTPS: 6-pyruvoyl tetr 30.9 80 0.0017 21.5 3.5 45 12-56 43-97 (123)
78 TIGR00436 era GTP-binding prot 30.2 2.6E+02 0.0056 21.7 6.8 89 17-106 151-247 (270)
79 PRK02487 hypothetical protein; 29.6 2.1E+02 0.0045 20.7 5.7 36 111-151 19-54 (163)
80 PF14847 Ras_bdg_2: Ras-bindin 29.4 95 0.0021 21.0 3.5 45 117-163 20-69 (105)
81 PF03701 UPF0181: Uncharacteri 29.3 1.2E+02 0.0026 17.7 3.4 32 102-133 15-46 (51)
82 COG0771 MurD UDP-N-acetylmuram 29.1 56 0.0012 28.1 2.9 60 64-128 346-411 (448)
83 cd01262 PH_PDK1 3-Phosphoinosi 28.9 40 0.00086 22.2 1.6 16 75-90 24-39 (89)
84 cd04702 ASRGL1_like ASRGL1_lik 28.6 2.3E+02 0.005 22.6 6.0 54 92-151 178-235 (261)
85 PF03681 UPF0150: Uncharacteri 27.9 70 0.0015 17.8 2.4 18 115-132 29-46 (48)
86 cd04512 Ntn_Asparaginase_2_lik 27.8 2.5E+02 0.0054 22.2 6.1 55 92-152 175-233 (248)
87 TIGR02261 benz_CoA_red_D benzo 27.7 1.2E+02 0.0027 24.0 4.4 29 68-100 104-135 (262)
88 KOG1930 Focal adhesion protein 27.6 41 0.00089 28.6 1.8 24 103-126 207-230 (483)
89 COG4245 TerY Uncharacterized p 27.2 1.3E+02 0.0028 22.9 4.2 45 119-163 22-68 (207)
90 PRK11325 scaffold protein; Pro 26.9 1.7E+02 0.0036 20.3 4.6 54 78-131 42-96 (127)
91 PF01592 NifU_N: NifU-like N t 26.8 1.9E+02 0.0042 19.8 4.9 64 70-133 29-96 (126)
92 KOG1467 Translation initiation 24.7 1.1E+02 0.0024 26.7 3.8 54 11-65 249-302 (556)
93 PF10632 He_PIG_assoc: He_PIG 24.6 98 0.0021 15.8 2.2 22 65-87 5-26 (29)
94 cd06402 PB1_p62 The PB1 domain 24.2 1.3E+02 0.0028 19.6 3.3 42 115-162 27-70 (87)
95 PF00538 Linker_histone: linke 23.9 1.6E+02 0.0034 18.3 3.7 39 96-134 20-58 (77)
96 TIGR00112 proC pyrroline-5-car 23.2 1.3E+02 0.0029 23.1 3.9 39 95-133 151-193 (245)
97 PF07277 SapC: SapC; InterPro 23.1 3.5E+02 0.0075 20.7 6.6 98 60-165 86-193 (221)
98 PHA01082 putative transcriptio 23.1 1.2E+02 0.0025 21.3 3.0 24 113-136 29-52 (133)
99 PF08383 Maf_N: Maf N-terminal 23.0 79 0.0017 17.0 1.7 12 114-125 22-33 (35)
100 PF08958 DUF1871: Domain of un 22.7 1.4E+02 0.003 19.1 3.2 30 101-130 42-71 (79)
101 cd01784 rasfadin_RA Ubiquitin- 22.2 1.5E+02 0.0032 19.4 3.3 45 112-161 20-65 (87)
102 KOG3652 Uncharacterized conser 22.1 2.2E+02 0.0048 26.1 5.3 94 35-132 210-305 (1215)
103 KOG0330 ATP-dependent RNA heli 22.0 1.2E+02 0.0026 25.9 3.4 124 5-129 100-233 (476)
104 PF01713 Smr: Smr domain; Int 21.9 2.1E+02 0.0046 17.8 4.1 33 114-151 5-37 (83)
105 PF05593 RHS_repeat: RHS Repea 21.8 1.1E+02 0.0023 16.2 2.3 19 79-97 8-26 (38)
106 COG0538 Icd Isocitrate dehydro 21.6 4.2E+02 0.0091 22.5 6.5 71 76-151 137-222 (407)
107 PRK02260 S-ribosylhomocysteina 21.3 3.4E+02 0.0073 19.9 5.7 60 76-135 71-151 (158)
108 PTZ00311 phosphoenolpyruvate c 21.3 52 0.0011 29.0 1.3 73 12-84 80-152 (561)
109 COG1577 ERG12 Mevalonate kinas 21.0 2.9E+02 0.0063 22.5 5.5 45 109-157 114-158 (307)
110 TIGR03192 benz_CoA_bzdQ benzoy 21.0 2.3E+02 0.005 22.9 4.8 33 64-100 128-163 (293)
111 PF11216 DUF3012: Protein of u 20.9 1.5E+02 0.0032 15.6 3.0 28 101-128 4-31 (32)
112 PF11469 Ribonucleas_3_2: Ribo 20.8 78 0.0017 21.6 1.8 28 101-128 60-88 (120)
113 PF01458 UPF0051: Uncharacteri 20.4 2E+02 0.0043 21.9 4.3 48 76-128 182-229 (229)
114 TIGR02259 benz_CoA_red_A benzo 20.3 2.1E+02 0.0045 24.5 4.5 34 68-106 274-310 (432)
115 PF04358 DsrC: DsrC like prote 20.2 2.6E+02 0.0056 19.0 4.3 35 14-52 39-73 (109)
116 PHA02762 hypothetical protein; 20.1 1.9E+02 0.0042 17.1 3.1 24 62-85 25-48 (62)
No 1
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=261.57 Aligned_cols=155 Identities=59% Similarity=1.023 Sum_probs=148.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~L 79 (169)
|+|+++++|++||..+|++.+.+++|.+++.|+++++++++++.+++++++.+|+++|. |||+|++|+||||++++|+|
T Consensus 36 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~L 115 (193)
T cd03758 36 YKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSL 115 (193)
T ss_pred EEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEE
Confidence 68999999999999999999999999999999999999999999999999999755554 69999999999996689999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEe
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREY 155 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 155 (169)
|++||+|++.+++++|+|+|+++++++||++|+++||+|||++++.+||+.+.+||+.++++++|++|+++|++++
T Consensus 116 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 116 YYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred EEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-41 Score=255.84 Aligned_cols=154 Identities=27% Similarity=0.409 Sum_probs=147.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|+.+|++.+.+++|.+++.|+++++++|+++.+|+++++++|. +|..||+|++|+|||| ++||+||
T Consensus 35 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~-~~~~~~~v~~li~G~D-~~g~~L~ 112 (188)
T cd03761 35 IEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQ-YKGMGLSMGTMICGWD-KTGPGLY 112 (188)
T ss_pred EEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEEEEEEe-CCCCEEE
Confidence 6899999999999999999999999999999999999999999999999999974 4557999999999999 6899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEec
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYA 156 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 156 (169)
++||+|++.+++++|+|+|+++++++||++|+++||+|||++++.+||+.+.+||+.++++++|++|+++|+++++
T Consensus 113 ~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~~ 188 (188)
T cd03761 113 YVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKIS 188 (188)
T ss_pred EEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998763
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-41 Score=255.99 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=145.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|++||..+|++.+.+++|.+++.|+++++++|+++.+|+++++++| ..|.+||+|++||||||++++|+||
T Consensus 38 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly-~~r~~P~~v~~ii~G~D~~~~p~Ly 116 (195)
T cd03759 38 FRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLY-EKRFGPYFVEPVVAGLDPDGKPFIC 116 (195)
T ss_pred EEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhcCCCceEEEEEEEEcCCCCEEEE
Confidence 689999999999999999999999999999999999999999999999999885 4456899999999999977789999
Q ss_pred EEcCCCCeeeeC-eeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEE
Q 030889 81 YIDYIATLHKVD-KAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 154 (169)
Q Consensus 81 ~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 154 (169)
.+||+|++.++. ++|+|+|++.++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus 117 ~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 191 (195)
T cd03759 117 TMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTT 191 (195)
T ss_pred EEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEE
Confidence 999999998877 99999999999999999999999999999999999999999999999999999999999864
No 4
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-40 Score=250.43 Aligned_cols=156 Identities=21% Similarity=0.366 Sum_probs=146.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHHHhc-CCCceeeEEEEEEeCCCCcE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVS-LYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~l~~~~r-~rP~~v~~llaG~d~~~gp~ 78 (169)
|+|+++++|+++|..+|++.+++++|.+++ .|+++++++++++.+++++++.+|.++. .|||+|++|+||||++++|+
T Consensus 37 ~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~ 116 (197)
T cd03760 37 FKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPF 116 (197)
T ss_pred EEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEE
Confidence 689999999999999999999999999986 5778899999999999999998864432 49999999999999668999
Q ss_pred EEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEec
Q 030889 79 LYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS--GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYA 156 (169)
Q Consensus 79 Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 156 (169)
||.+||+|++.+++++|+|+|+++++++||+.|++ +||+|||++++.+||+.+.+||..++++++|++|+++|+++..
T Consensus 117 Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 117 LGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred EEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999987653
No 5
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-40 Score=256.72 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=153.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++|++|+++|..+|++.+.+.+|.+++.|+++++++++++.++++|++.+|.+++ .|||+|++|++||| ..||
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D-~~g~ 139 (227)
T cd03750 61 EQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWD-EGGP 139 (227)
T ss_pred EEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEe-CCCC
Confidence 5899999999999999999999999999999999999999999999999999875543 39999999999999 5799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC-CcEEec
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD-GAREYA 156 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g~~~~~ 156 (169)
+||.+||+|++.+++++|+|+|+++++++||++|+++||++||++++++||+.+.+|| .++++++|++|+++ |+++++
T Consensus 140 ~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~ 218 (227)
T cd03750 140 YLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLT 218 (227)
T ss_pred EEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999999999987 59999999999996 899999
Q ss_pred ccccccCC
Q 030889 157 WRESVKDT 164 (169)
Q Consensus 157 ~~~~~~~~ 164 (169)
++|+.+++
T Consensus 219 ~~ei~~~~ 226 (227)
T cd03750 219 PAEIKDYL 226 (227)
T ss_pred HHHHHHHh
Confidence 99998865
No 6
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=257.66 Aligned_cols=161 Identities=26% Similarity=0.450 Sum_probs=153.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~L 79 (169)
|+|+|||+|++||+.+|++.+++++|.+++.|++.++++|+++.+++++++.+|.+++. |||+|++|+||+|+ ++|+|
T Consensus 65 ~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~L 143 (236)
T COG0638 65 FKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRL 143 (236)
T ss_pred EEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeE
Confidence 58999999999999999999999999999999999999999999999999999755443 89999999999995 89999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC-CCcEEeccc
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK-DGAREYAWR 158 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~-~g~~~~~~~ 158 (169)
|++||+|++.+++++|+|+|++.++++||+.|+++|+.|||++++.+||+.+.+||..++++++|++|++ +|++++..+
T Consensus 144 y~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~ 223 (236)
T COG0638 144 YSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGE 223 (236)
T ss_pred EEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHH
Confidence 9999999999999999999999999999999999999999999999999999999988999999999999 699999998
Q ss_pred cccc
Q 030889 159 ESVK 162 (169)
Q Consensus 159 ~~~~ 162 (169)
|+..
T Consensus 224 ~~~~ 227 (236)
T COG0638 224 EIKK 227 (236)
T ss_pred HHHH
Confidence 8764
No 7
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-40 Score=247.00 Aligned_cols=154 Identities=26% Similarity=0.478 Sum_probs=147.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++++++|..+|++.+.+.++.+++.|++.++++++++.+++++++.+| .++.|||+|++|+||+| +++|+||
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~P~~~~~lvaG~d-~~~~~ly 112 (188)
T cd03764 35 FQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILN-SSKYFPYIVQLLIGGVD-EEGPHLY 112 (188)
T ss_pred EEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-hcCCCCcEEEEEEEEEe-CCCCEEE
Confidence 579999999999999999999999999999999999999999999999999886 44669999999999999 5899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEec
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYA 156 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 156 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++|+++||++++++||+.+.+||+.++++++|++|+++|+++++
T Consensus 113 ~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 113 SLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred EECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
No 8
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-40 Score=252.65 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=146.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++|++||..+|++.+.+.+|.+++.|+++++++++++.+++++++++| ..|.+||+|++||||||++++|+||
T Consensus 43 ~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly-~~R~~P~~~~~iiaG~D~~~~p~Ly 121 (212)
T cd03757 43 FKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILY-SRRFFPYYVFNILAGIDEEGKGVVY 121 (212)
T ss_pred EEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHH-hhcCCCeEEEEEEEEEcCCCCEEEE
Confidence 589999999999999999999999999999999999999999999999999885 4456899999999999976789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccC---------CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFH---------SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---------~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
++||+|++.+++++|+|+|+++++++||+.|+ ++||+|||++++++||+.+.+||+.++++++|++|+++|
T Consensus 122 ~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 122 SYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred EEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 99999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred cEEe
Q 030889 152 AREY 155 (169)
Q Consensus 152 ~~~~ 155 (169)
+++.
T Consensus 202 ~~~~ 205 (212)
T cd03757 202 IEEE 205 (212)
T ss_pred EEEE
Confidence 8754
No 9
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.2e-40 Score=257.25 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=152.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|+.+|++.+.+++|.+++.|+++++++|+++.+|++|++++| .+|..|+.+++|+|||| ++||+||
T Consensus 74 ~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~-~~R~~~~~v~~iiaG~D-~~gp~Ly 151 (247)
T PTZ00488 74 IEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVW-NYKGMGLSMGTMICGWD-KKGPGLF 151 (247)
T ss_pred EEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-hcCCCCeeEEEEEEEEe-CCCCEEE
Confidence 689999999999999999999999999999999999999999999999999885 44444556668999999 6789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++++++||+.+.+||+.++++++|++|+++|+++++++||
T Consensus 152 ~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei 231 (247)
T PTZ00488 152 YVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDC 231 (247)
T ss_pred EEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 030889 161 VKD 163 (169)
Q Consensus 161 ~~~ 163 (169)
.++
T Consensus 232 ~~~ 234 (247)
T PTZ00488 232 FDL 234 (247)
T ss_pred HHH
Confidence 765
No 10
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.4e-39 Score=244.04 Aligned_cols=150 Identities=28% Similarity=0.469 Sum_probs=144.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++|+++|..+|++.+.++++.+++.|+..++++++++.+++++++.+| .++.|||+|++|+|||| ++||+||
T Consensus 36 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~~~rP~~v~~ivaG~d-~~g~~Ly 113 (185)
T TIGR03634 36 FQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILN-SNRFFPFIVQLLVGGVD-EEGPHLY 113 (185)
T ss_pred EEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEEEEEEe-CCCCEEE
Confidence 579999999999999999999999999999999999999999999999999886 44669999999999999 6789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|+
T Consensus 114 ~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 114 SLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred EECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 11
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=6.8e-40 Score=251.79 Aligned_cols=164 Identities=19% Similarity=0.269 Sum_probs=151.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--CCCceeeEEEEEEeCC-CCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--KSPYMVNILLAGYDKE-TGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--~rP~~v~~llaG~d~~-~gp 77 (169)
|+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.+|++|++++|.++. .|||+|++||||||++ ++|
T Consensus 37 ~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~ 116 (219)
T TIGR03690 37 YPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAG 116 (219)
T ss_pred EEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCc
Confidence 5899999999999999999999999999999999999999999999999999975432 4999999999999954 689
Q ss_pred EEEEEcCCCC-eeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCC-------EEEEEEcC
Q 030889 78 SLYYIDYIAT-LHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPN-------FVIKIVDK 149 (169)
Q Consensus 78 ~Ly~id~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~-------i~i~~i~~ 149 (169)
+||++||+|+ +.+++++|+|+|+++++++||++|+++||.+||++++.+||..+.+||..+++. ++|++|++
T Consensus 117 ~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~ 196 (219)
T TIGR03690 117 RIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITA 196 (219)
T ss_pred EEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEcc
Confidence 9999999995 667789999999999999999999999999999999999999999999867764 39999999
Q ss_pred CCcEEecccccccCC
Q 030889 150 DGAREYAWRESVKDT 164 (169)
Q Consensus 150 ~g~~~~~~~~~~~~~ 164 (169)
+|+++++++||.++.
T Consensus 197 ~g~~~l~~~ei~~~~ 211 (219)
T TIGR03690 197 DGARRVPESELEELA 211 (219)
T ss_pred CceEEcCHHHHHHHH
Confidence 999999999998754
No 12
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-39 Score=243.70 Aligned_cols=152 Identities=21% Similarity=0.317 Sum_probs=145.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++|+++|..+|++.+.++++.+++.|+.+++++++++.+++++++++| .+| |||+|++||||+|+++||+||
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~~-~~~~~~~ii~G~d~~~gp~ly 112 (188)
T cd03762 35 TQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCY-NYK-EMLSAGIIVAGWDEQNGGQVY 112 (188)
T ss_pred EEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHH-hcc-ccceeeEEEEEEcCCCCcEEE
Confidence 579999999999999999999999999999999999999999999999999886 333 799999999999966899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEE
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 154 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 154 (169)
++||+|++.+++++++|+|+++++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus 113 ~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 113 SIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred EECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 13
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-39 Score=242.26 Aligned_cols=154 Identities=22% Similarity=0.281 Sum_probs=146.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++|+++|..+|++.+.+.+|.+++.|+++++++++++.+++++++.+|. ++ .||+|++|+|||| ++||+||
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~-~~-~p~~v~~ivaG~d-~~g~~ly 111 (189)
T cd03763 35 HYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFR-YQ-GHIGAALVLGGVD-YTGPHLY 111 (189)
T ss_pred EEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cC-CccceeEEEEeEc-CCCCEEE
Confidence 6899999999999999999999999999999999999999999999999998863 33 5999999999999 6789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
.+||+|++.+++++|+|+|+++++++||++|+++||++||++++++||+.+.+||+.++++++|++|+++|+++..+
T Consensus 112 ~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 112 SIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred EECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997754
No 14
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.3e-39 Score=253.80 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=154.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++|+|+++|..+|++.+.+.+|.++..|++.++++++++.+++.++..+|.+++ .|||+|++||||||+++||
T Consensus 66 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp 145 (253)
T PTZ00246 66 YKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGY 145 (253)
T ss_pred EEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCc
Confidence 5899999999999999999999999999999999999999999999999998775543 3999999999999976899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC------
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG------ 151 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g------ 151 (169)
+||.+||+|++.+++++|+|+|+++++++||++|+++|++|||++++++||+.+.++|..++++++|++|+++|
T Consensus 146 ~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~ 225 (253)
T PTZ00246 146 QLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPI 225 (253)
T ss_pred EEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred cEEecccccccCC
Q 030889 152 AREYAWRESVKDT 164 (169)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (169)
+++++++||.++.
T Consensus 226 ~~~l~~~ei~~~l 238 (253)
T PTZ00246 226 QKMLSEKEIAELL 238 (253)
T ss_pred eEECCHHHHHHHH
Confidence 8999999998764
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-39 Score=247.87 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=148.1
Q ss_pred Cccc----CcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHH---hc------CCCceeeE
Q 030889 1 MVLD----SHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGI-PLTTAAAANFTRGELATA---LR------KSPYMVNI 66 (169)
Q Consensus 1 ~~I~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~l~~~---~r------~rP~~v~~ 66 (169)
|+|+ +||+|++||..||++.+++.+|.+++.|++++++ +++++.+|+++++.++.. ++ .|||+|++
T Consensus 34 ~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvsl 113 (236)
T cd03765 34 FVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASF 113 (236)
T ss_pred EEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEE
Confidence 4676 8999999999999999999999999999999999 899999999999976532 11 38999999
Q ss_pred EEEEEeCCCCcEEEEEcCCCCeeee----CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCE
Q 030889 67 LLAGYDKETGPSLYYIDYIATLHKV----DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNF 142 (169)
Q Consensus 67 llaG~d~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i 142 (169)
|+||||++.||+||++||+|++.++ +++|+|. +.+++++||++|+++||+|||++++++||..+.+||..+++++
T Consensus 114 IigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~i 192 (236)
T cd03765 114 ILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPL 192 (236)
T ss_pred EEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 9999996689999999999999998 5589996 6999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEecccccccCC
Q 030889 143 VIKIVDKDGAREYAWRESVKDT 164 (169)
Q Consensus 143 ~i~~i~~~g~~~~~~~~~~~~~ 164 (169)
+|++|+++|++....+.+++.=
T Consensus 193 ev~vI~k~G~~~~~~~~~~~~~ 214 (236)
T cd03765 193 DLLVYERDSLQVGHYRRIEEDD 214 (236)
T ss_pred EEEEEECCCeeeeeeEEecCCC
Confidence 9999999999887776666554
No 16
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-38 Score=238.85 Aligned_cols=154 Identities=32% Similarity=0.545 Sum_probs=146.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++++|+++|+.+|++.+.++++.+++.|++.++++++++.+++++++.+|.+++ |||++++|+||+|++++|+||
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~P~~~~~iv~G~d~~~~~~l~ 113 (189)
T cd01912 35 FKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG-FPYYVSLIVGGVDKGGGPFLY 113 (189)
T ss_pred EEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC-CCeEEEEEEEEEcCCCCeEEE
Confidence 6899999999999999999999999999999999999999999999999998864433 899999999999966899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEe
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREY 155 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 155 (169)
.+||+|++.+++++|+|+++++++++||+.|+++||++||++++.+||+.+.+||+.++++++|++|+++|+++.
T Consensus 114 ~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 114 YVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred EECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
No 17
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-38 Score=245.65 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=148.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||..+|++.+.+.++.++..|+++++++++++.+++++++.+|.+++ .|||+|++||||+| +++|
T Consensus 63 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d-~~~~ 141 (224)
T TIGR03633 63 FKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD-DGGP 141 (224)
T ss_pred EEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe-CCcC
Confidence 5799999999999999999999999999999999999999999999999999875543 38999999999999 7899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEe
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREY 155 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~ 155 (169)
+||.+||.|++.+++++|+|+|+++++++||+.|+++|+++||++++++||+.+.+ |+.++++++|++|+++| ++.+
T Consensus 142 ~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~ 220 (224)
T TIGR03633 142 RLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKL 220 (224)
T ss_pred EEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEEC
Confidence 99999999999999999999999999999999999999999999999999999987 88999999999999987 9988
Q ss_pred cccc
Q 030889 156 AWRE 159 (169)
Q Consensus 156 ~~~~ 159 (169)
+++|
T Consensus 221 ~~~~ 224 (224)
T TIGR03633 221 SVEE 224 (224)
T ss_pred CCCC
Confidence 8876
No 18
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.2e-38 Score=248.05 Aligned_cols=161 Identities=20% Similarity=0.321 Sum_probs=151.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||..+|++.++++++.+++.|+++++++++++.+++++++.+|.+++ .|||+|++||||+| ++||
T Consensus 70 ~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d-~~gp 148 (241)
T PRK03996 70 FKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD-DGGP 148 (241)
T ss_pred EEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe-CCcC
Confidence 5799999999999999999999999999999999999999999999999999875543 38999999999999 5789
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEe
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREY 155 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~ 155 (169)
+||.+||+|++.+++++|+|+|++.++++||+.|+++|+++||++++++||+.+.+++ .++++++|++|+++| ++.+
T Consensus 149 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~-~~~~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 149 RLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGK-LDPENVEIAYIDVETKKFRKL 227 (241)
T ss_pred EEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCCcEEEC
Confidence 9999999999999999999999999999999999999999999999999999998764 789999999999986 9999
Q ss_pred cccccccC
Q 030889 156 AWRESVKD 163 (169)
Q Consensus 156 ~~~~~~~~ 163 (169)
+++|+.++
T Consensus 228 ~~~ei~~~ 235 (241)
T PRK03996 228 SVEEIEKY 235 (241)
T ss_pred CHHHHHHH
Confidence 99998765
No 19
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=235.57 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=150.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh------c--CCCceeeEEEEEEe
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATAL------R--KSPYMVNILLAGYD 72 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~------r--~rP~~v~~llaG~d 72 (169)
++|++||+|++||+.+|++.+++++|.++++|++.|+++++++.+.+.++++--++. + +|||||++|+||+|
T Consensus 68 ~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D 147 (241)
T KOG0176|consen 68 VEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD 147 (241)
T ss_pred eehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc
Confidence 579999999999999999999999999999999999999999999999999643331 1 39999999999999
Q ss_pred CCCCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC-C
Q 030889 73 KETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD-G 151 (169)
Q Consensus 73 ~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g 151 (169)
++||+||+.||+|++++|++-|+|+|+.-+++.|++.|+++|+++||+.+++..|+.+++.. ++.+|+++.+|+++ +
T Consensus 148 -~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~ 225 (241)
T KOG0176|consen 148 -ETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGE 225 (241)
T ss_pred -CCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCc
Confidence 89999999999999999999999999999999999999999999999999999999999977 79999999999998 6
Q ss_pred cEEeccccccc
Q 030889 152 AREYAWRESVK 162 (169)
Q Consensus 152 ~~~~~~~~~~~ 162 (169)
++++++||+..
T Consensus 226 f~~~t~EE~~~ 236 (241)
T KOG0176|consen 226 FHIYTPEEVEQ 236 (241)
T ss_pred eEecCHHHHHH
Confidence 99999999754
No 20
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-37 Score=237.76 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=140.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||..+|++.+.+++|.+++.|+++++++|+++.++++|+..+|.+++ .|||+|++|++|||++.||
T Consensus 64 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~ 143 (213)
T cd03752 64 YKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGF 143 (213)
T ss_pred EEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCC
Confidence 5799999999999999999999999999999999999999999999999998875554 3999999999999976899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||.+||+|++.+++++|+|+|+.+++++||+.|+++||+|||++++.+||+.+.+||..++++++|++|
T Consensus 144 ~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 144 QLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 21
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-37 Score=235.58 Aligned_cols=147 Identities=23% Similarity=0.366 Sum_probs=139.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||+.+|++.+.+++|.+++.|+++++++++++.+++++++.+|.+++ .|||+|++||+||| +.||
T Consensus 59 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D-~~gp 137 (211)
T cd03749 59 FKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYD-ESGP 137 (211)
T ss_pred EEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEc-CCCC
Confidence 5899999999999999999999999999999999999999999999999998875543 38999999999999 6799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHhccc-ccCCCEEEEEEc
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFH--SGMSVEEAVDLVDKCILEIRSRLV-VAPPNFVIKIVD 148 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~l~~~~l~~~~~~d~-~~~~~i~i~~i~ 148 (169)
+||++||+|++.+++++|+|+|++.++++||++|+ ++|++|||++++.++|+.+.++|. .+++++||++|+
T Consensus 138 ~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 138 HLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred eEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999 699999999999999999999887 899999999984
No 22
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-37 Score=235.40 Aligned_cols=144 Identities=19% Similarity=0.313 Sum_probs=136.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++|++|++||+.+|++.+.+++|.+++.|+++++++|+++.+++++++.+|.+++ .|||+|++|++|||++++|
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p 140 (207)
T cd03755 61 CMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTP 140 (207)
T ss_pred EEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCe
Confidence 5799999999999999999999999999999999999999999999999999975543 3899999999999976799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||++||+|++.+++++|+|+|+++++++||++|+++||+|||++++++||..+.+ .+++++||+++
T Consensus 141 ~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 141 RLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred EEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999986 68899999985
No 23
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.1e-37 Score=238.89 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=148.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHh--cCCCceeeEEEEEEeC-CCC
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNG-IPLTTAAAANFTRGELATAL--RKSPYMVNILLAGYDK-ETG 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~l~~~~--r~rP~~v~~llaG~d~-~~g 76 (169)
|+|+|||+|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+.+++.++... +.|||+|++|++|||+ +.|
T Consensus 54 ~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~g 133 (228)
T TIGR03691 54 SELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQ 133 (228)
T ss_pred EEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCC
Confidence 6899999999999999999999999999999999998 78999999998888664322 3499999999999985 478
Q ss_pred cEEEEEcCCCCeeeeC-eeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH--hcccccCCCEEEEEEcCCC--
Q 030889 77 PSLYYIDYIATLHKVD-KAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR--SRLVVAPPNFVIKIVDKDG-- 151 (169)
Q Consensus 77 p~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~--~~d~~~~~~i~i~~i~~~g-- 151 (169)
|+||.+||+|++.+++ ++|+|+|++.++++||++|+++||+|||++++.+||+.+. ++|..++.++||++|++++
T Consensus 134 p~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~ 213 (228)
T TIGR03691 134 DQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPR 213 (228)
T ss_pred CEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCc
Confidence 9999999999999976 8999999999999999999999999999999999999995 4667899999999999754
Q ss_pred --cEEecccccccC
Q 030889 152 --AREYAWRESVKD 163 (169)
Q Consensus 152 --~~~~~~~~~~~~ 163 (169)
+++++++||.++
T Consensus 214 ~~f~~l~~~ei~~~ 227 (228)
T TIGR03691 214 RAFRRITGEALERL 227 (228)
T ss_pred cceEECCHHHHHhh
Confidence 999999999764
No 24
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-37 Score=234.41 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=137.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++|++|++||+.+|++.+.+++|.+++.|+++++++++++.++++|++.+|.+++ .|||+|++|+|||| ++||
T Consensus 64 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D-~~gp 142 (212)
T cd03751 64 FNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD-SDGP 142 (212)
T ss_pred eEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe-CCcC
Confidence 6899999999999999999999999999999999999999999999999998875543 39999999999999 6799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||.+||+|++.+++++|+|+|++.++++||++|+++||+|||++++.++|+.+.+.+.....++||+++
T Consensus 143 ~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 143 QLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999866578889999875
No 25
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-37 Score=233.86 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=136.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||+.+|++.+.+++|.++..|+++++++++++.+|+++++++|.+++ .|||+|++|+||+|+++||
T Consensus 63 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp 142 (215)
T cd03754 63 FRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGP 142 (215)
T ss_pred EEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCe
Confidence 5799999999999999999999999999999999999999999999999998664432 2899999999999976899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCC--C--CHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSG--M--SVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~--s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||.+||+|++.+++++|+|+|++.++++||++|+++ | |+|||++++++||..+.+|| ..++++||++|
T Consensus 143 ~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 143 QLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred EEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999999999999999999999985 7 99999999999999999999 46999999985
No 26
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-36 Score=230.61 Aligned_cols=146 Identities=22% Similarity=0.318 Sum_probs=138.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||+.+|++.+.+.++.+++.|+++++++++++.+++++++.+|.+++ .|||+|++|||||| +++|
T Consensus 62 ~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D-~~~~ 140 (211)
T cd03756 62 YKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD-DGGP 140 (211)
T ss_pred EEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe-CCCC
Confidence 5799999999999999999999999999999999999999999999999998875543 38999999999999 6899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD 148 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~ 148 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++|+++||++++++||..+.++|. ++++++|++|+
T Consensus 141 ~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 141 RLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred EEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999998884 99999999986
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.5e-36 Score=230.49 Aligned_cols=146 Identities=24% Similarity=0.374 Sum_probs=138.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|+++++|++||..+|++.+.+.++.++..|+++++++++++.+|+++++.+|.+++ .|||+|++||+|||++++|
T Consensus 61 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~ 140 (209)
T cd01911 61 FKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGP 140 (209)
T ss_pred EEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCc
Confidence 5799999999999999999999999999999999999999999999999998875543 3899999999999976799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||.+||.|++.+++++++|+|+.+++++||+.|+++|+++||++++++||+.+.+||+ ++++++|+++
T Consensus 141 ~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 141 QLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred EEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998 9999999875
No 28
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-36 Score=228.03 Aligned_cols=145 Identities=25% Similarity=0.332 Sum_probs=136.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--------CCCceeeEEEEEEe
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--------KSPYMVNILLAGYD 72 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--------~rP~~v~~llaG~d 72 (169)
|+|+++++|++||+.+|++.+.+.+|.+++.|+++++++++++.+++++++.+|.+.+ .|||+|++||||||
T Consensus 61 ~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D 140 (213)
T cd03753 61 MEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD 140 (213)
T ss_pred EEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc
Confidence 5789999999999999999999999999999999999999999999999998875432 38999999999999
Q ss_pred CCCCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 73 KETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 73 ~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
++||+||.+||+|++.+++++|+|++++.++++|+++|+++|++|||++++++||+.+.+++ .++++++|++|
T Consensus 141 -~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 141 -ENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred -CCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999998776 79999999985
No 29
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.6e-35 Score=220.95 Aligned_cols=147 Identities=27% Similarity=0.446 Sum_probs=139.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc-CCCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r-~rP~~v~~llaG~d~~~gp~L 79 (169)
|+|+++++|+++|..+|++.+.+.++.++..|+++++++++++.+++++++++|..++ .|||++++|+||+|++++|+|
T Consensus 35 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~L 114 (182)
T cd01906 35 FKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQL 114 (182)
T ss_pred EEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEE
Confidence 5799999999999999999999999999999999999999999999999999975443 289999999999996689999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
|.+||+|++.+++++|+|+|+++++++||+.|+++||.+||++++++||+.+.++|..++++++|++|
T Consensus 115 y~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 115 YSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred EEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999889999999875
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2e-35 Score=221.82 Aligned_cols=147 Identities=25% Similarity=0.456 Sum_probs=137.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh---cCCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATAL---RKSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~---r~rP~~v~~llaG~d~~~gp 77 (169)
|+|++|+++++||..+|++.+.++++.++..|++.++.+++++.+++.+++.++..+ +.||+++++|+||||++++|
T Consensus 40 ~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~ 119 (190)
T PF00227_consen 40 FKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGP 119 (190)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEE
T ss_pred eeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeecccccc
Confidence 579999999999999999999999999999999999999999977777777666433 34999999999999976779
Q ss_pred EEEEEcCCCCeeee-CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 78 SLYYIDYIATLHKV-DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 78 ~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
+||.+||+|++.++ +++|+|+|+++++++||+.|+++||++||++++++||+.+.++|+.++++++|++|
T Consensus 120 ~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 120 QLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred ceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999 69999999999999999999999999999999999999999999999999999987
No 31
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=220.00 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=153.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~~gp 77 (169)
++|.++|+|..||+.+|++.+++..|+.++.|...|+++|++..|.+.++..+|.++++ ||||+++++|||| +++|
T Consensus 66 ~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~-~~~p 144 (233)
T KOG0181|consen 66 EKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD-EGGP 144 (233)
T ss_pred hhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC-CCce
Confidence 47899999999999999999999999999999999999999999999999999988764 9999999999999 7899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
.||++||+|+++.|+++|+|.+...++++||++|+.+|.+++++..++-.|+...+-. .+.++|||+++...+|+++++
T Consensus 145 ~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~lt~ 223 (233)
T KOG0181|consen 145 LLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRLTP 223 (233)
T ss_pred eEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccc-cccCceEEEEecCCceeecCH
Confidence 9999999999999999999999999999999999999999999999999999999876 799999999999999999999
Q ss_pred ccccc
Q 030889 158 RESVK 162 (169)
Q Consensus 158 ~~~~~ 162 (169)
.||.+
T Consensus 224 ~eI~d 228 (233)
T KOG0181|consen 224 AEIED 228 (233)
T ss_pred HHHHH
Confidence 99975
No 32
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=219.62 Aligned_cols=159 Identities=16% Similarity=0.260 Sum_probs=149.7
Q ss_pred cccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCCCCcE
Q 030889 2 VLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 2 ~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~~gp~ 78 (169)
.+++|++|+++|+.||++.|++++|.+|+.|+++.+.|++++.++++|+.+.|.++++ ||||++.||+|+|+++.|+
T Consensus 65 ~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~ 144 (249)
T KOG0183|consen 65 MLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPR 144 (249)
T ss_pred eecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCee
Confidence 3789999999999999999999999999999999999999999999999988877764 9999999999999999999
Q ss_pred EEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCC--CCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEe
Q 030889 79 LYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSG--MSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREY 155 (169)
Q Consensus 79 Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~ 155 (169)
||++||+|.+.+|++.|+|.+++.+..+|||.|..+ .+..++++|+.++|..+... .+++++++++++++ ++.+
T Consensus 145 lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l 221 (249)
T KOG0183|consen 145 LYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKML 221 (249)
T ss_pred eEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeec
Confidence 999999999999999999999999999999999876 78899999999999999874 58899999999987 9999
Q ss_pred cccccccC
Q 030889 156 AWRESVKD 163 (169)
Q Consensus 156 ~~~~~~~~ 163 (169)
+.++|..+
T Consensus 222 ~~~~I~~~ 229 (249)
T KOG0183|consen 222 ESEEIDDI 229 (249)
T ss_pred CHHHHHHH
Confidence 99998765
No 33
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-34 Score=210.23 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=152.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~~gp 77 (169)
++|+|+|+|+++|+++|+..|++++|..++.|.++|++++|.+.|++.+++..|-+++. ||||||+|.+|||...|.
T Consensus 66 Y~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gy 145 (249)
T KOG0178|consen 66 YKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGY 145 (249)
T ss_pred hhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcce
Confidence 58999999999999999999999999999999999999999999999999998866653 999999999999987889
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCC-CHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC----c
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGM-SVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG----A 152 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~-s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g----~ 152 (169)
+||+.||||++-.|++.++|.++..++..|+..|+++. +++||+.++++.|....+.+.++.+.+||+.|+++. +
T Consensus 146 qLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~ 225 (249)
T KOG0178|consen 146 QLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVL 225 (249)
T ss_pred EEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEE
Confidence 99999999999999999999999999999999999875 599999999999999999998999999999999863 6
Q ss_pred EEecccccccC
Q 030889 153 REYAWRESVKD 163 (169)
Q Consensus 153 ~~~~~~~~~~~ 163 (169)
++++++||..|
T Consensus 226 ~i~~~~ev~kl 236 (249)
T KOG0178|consen 226 KILKKDEVLKL 236 (249)
T ss_pred EecCHHHHHHH
Confidence 78888888765
No 34
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-33 Score=202.86 Aligned_cols=158 Identities=58% Similarity=0.974 Sum_probs=151.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~L 79 (169)
++|++++.|+++|..+|+.++.+++.+.++.|+.++|.+++|+.+|+++++.+....|+ +||.|++|+||+|++.||.|
T Consensus 36 ~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L 115 (200)
T KOG0177|consen 36 HRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPEL 115 (200)
T ss_pred EEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCce
Confidence 36899999999999999999999999999999999999999999999999999877785 89999999999999999999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccc
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWR 158 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 158 (169)
|++|..|+..+.++++-|.++.++.++|+++|+|+||.|||+++..+|+..+.+|-..+-+++.|.+|+|+|++.++.-
T Consensus 116 ~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i 194 (200)
T KOG0177|consen 116 YYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDI 194 (200)
T ss_pred eeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999977653
No 35
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-33 Score=205.11 Aligned_cols=153 Identities=23% Similarity=0.331 Sum_probs=145.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+++|+++++.+|++||+..|...++..+..|+.+++..|++..+|++|++.|| .+|++||.+..+++|+|+++++.+|
T Consensus 64 ~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY-~kRFFPYYv~~ilaGiDeeGKG~Vy 142 (235)
T KOG0179|consen 64 FKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILY-SKRFFPYYVFNILAGIDEEGKGAVY 142 (235)
T ss_pred eeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHh-hcccccceeeeeeecccccCceeEE
Confidence 689999999999999999999999999999999999999999999999999985 7788999999999999988999999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccC-----------CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFH-----------SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK 149 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-----------~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~ 149 (169)
++||.|++.+..+.|.|+++..++|+|+.... +.+|+|+|++|+++++..|.+||+.++++++|+++++
T Consensus 143 SyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk 222 (235)
T KOG0179|consen 143 SYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITK 222 (235)
T ss_pred eecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEec
Confidence 99999999999999999999999999998643 4589999999999999999999999999999999999
Q ss_pred CCcEE
Q 030889 150 DGARE 154 (169)
Q Consensus 150 ~g~~~ 154 (169)
+|++.
T Consensus 223 ~gV~~ 227 (235)
T KOG0179|consen 223 DGVEV 227 (235)
T ss_pred CCEEE
Confidence 99764
No 36
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=205.85 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=153.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~~gp 77 (169)
|+|+.+|+|+++|..+|++..++++|.++.++++.||.+||++.||+++++..|.++++ ||+||.+++.|+|++.||
T Consensus 70 f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP 149 (246)
T KOG0182|consen 70 FRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGP 149 (246)
T ss_pred EEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCc
Confidence 68999999999999999999999999999999999999999999999999998877664 999999999999999999
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCC--CCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSG--MSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AR 153 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~ 153 (169)
.+|.+||.|.++.++++|.|.....+..+||++|+++ +|.+|+++++..||..+...| .....+||.+++++. ++
T Consensus 150 ~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~D-fk~se~EVgvv~~~~p~f~ 228 (246)
T KOG0182|consen 150 SVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGID-FKSSELEVGVVTVDNPEFR 228 (246)
T ss_pred ceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcc-cCCcceEEEEEEcCCccee
Confidence 9999999999999999999999999999999999987 789999999999999999988 688899999999974 99
Q ss_pred EecccccccC
Q 030889 154 EYAWRESVKD 163 (169)
Q Consensus 154 ~~~~~~~~~~ 163 (169)
+|+.+||.+.
T Consensus 229 ~Ls~~eie~h 238 (246)
T KOG0182|consen 229 ILSAEEIEEH 238 (246)
T ss_pred eccHHHHHHH
Confidence 9999998753
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=210.08 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=154.5
Q ss_pred cccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEE
Q 030889 2 VLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYY 81 (169)
Q Consensus 2 ~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~ 81 (169)
+||+++.-+++|-.||+|++-+.+.++|..|++++++.|+|...+++|+++++ ++|..-|.+..+|+||| +.||.||+
T Consensus 107 eIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y-~YkGmGLsmGtMi~G~D-k~GP~lyY 184 (285)
T KOG0175|consen 107 EINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVY-QYKGMGLSMGTMIAGWD-KKGPGLYY 184 (285)
T ss_pred eechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHh-hccCcchhheeeEeecc-CCCCceEE
Confidence 68999999999999999999999999999999999999999999999999885 66667899999999999 89999999
Q ss_pred EcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecccccc
Q 030889 82 IDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESV 161 (169)
Q Consensus 82 id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~ 161 (169)
+|..|+..+.+-.++|+|+.+++++|+..|++||+.|||.+|++++|..|..||.++|+.+.++.|+++||..++..++.
T Consensus 185 VDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~ 264 (285)
T KOG0175|consen 185 VDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVS 264 (285)
T ss_pred EcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 030889 162 KD 163 (169)
Q Consensus 162 ~~ 163 (169)
+|
T Consensus 265 ~L 266 (285)
T KOG0175|consen 265 EL 266 (285)
T ss_pred HH
Confidence 76
No 38
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-31 Score=199.40 Aligned_cols=160 Identities=22% Similarity=0.292 Sum_probs=148.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++|++++++|+++|++.|.+++|.+|..+++.|++++++.-+...|.+..|..++ .|||||.++++|+| +.||
T Consensus 64 ~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD-e~G~ 142 (264)
T KOG0863|consen 64 FKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD-ESGP 142 (264)
T ss_pred EecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec-CCCc
Confidence 6899999999999999999999999999999999999999999999999888875543 39999999999999 7999
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHh-cccccCCCEEEEEEcCC-CcE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFH--SGMSVEEAVDLVDKCILEIRS-RLVVAPPNFVIKIVDKD-GAR 153 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~l~~~~l~~~~~-~d~~~~~~i~i~~i~~~-g~~ 153 (169)
|||.++|+|.+.++++.++|+.++.++++||++.. .+++.||.+..++.||+.... .+.+++.|++|+++.|| .|.
T Consensus 143 hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~ 222 (264)
T KOG0863|consen 143 HLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFT 222 (264)
T ss_pred eeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceE
Confidence 99999999999999999999999999999999876 689999999999999999988 44689999999999998 599
Q ss_pred Eecccccc
Q 030889 154 EYAWRESV 161 (169)
Q Consensus 154 ~~~~~~~~ 161 (169)
+++.+++.
T Consensus 223 ~~d~~~~~ 230 (264)
T KOG0863|consen 223 ILDQKDVA 230 (264)
T ss_pred eecHHHHH
Confidence 99988776
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=194.14 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=147.0
Q ss_pred cccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEE
Q 030889 2 VLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYY 81 (169)
Q Consensus 2 ~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~ 81 (169)
+|+|+|+||.||..||.|.+.+.++.++..|..++++++++...|+.++++.| ++| .-|..++|+||||++.|.++|.
T Consensus 55 ~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y-~~r-e~L~AgliVAGwD~~~gGqVY~ 132 (224)
T KOG0174|consen 55 PITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICY-NYR-EMLSAGLIVAGWDEKEGGQVYS 132 (224)
T ss_pred eccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH-hCH-HhhhcceEEeecccccCceEEE
Confidence 68999999999999999999999999999999999999999999999999775 444 3589999999999999999999
Q ss_pred EcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcE--Eecccc
Q 030889 82 IDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAR--EYAWRE 159 (169)
Q Consensus 82 id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~--~~~~~~ 159 (169)
+-.-|++.+.++..-|+||.+++++++..|+++||+||+++++++|+..+++||..+++.|++.+|+++|++ ++..++
T Consensus 133 iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~ 212 (224)
T KOG0174|consen 133 IPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDK 212 (224)
T ss_pred eecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCc
Confidence 988889999999999999999999999999999999999999999999999999999999999999999965 455555
Q ss_pred ccc
Q 030889 160 SVK 162 (169)
Q Consensus 160 ~~~ 162 (169)
++.
T Consensus 213 ~~~ 215 (224)
T KOG0174|consen 213 LGQ 215 (224)
T ss_pred ccc
Confidence 543
No 40
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=198.23 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=142.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~~gp 77 (169)
|.|++||+|+++|+.+|.+.+.+++|.++..|+.+|+.++|.+.++.++++++|.++.. |||||+.++++|| ++||
T Consensus 68 ~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd-~~g~ 146 (254)
T KOG0184|consen 68 FSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYD-DEGP 146 (254)
T ss_pred EeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEe-CCCc
Confidence 57899999999999999999999999999999999999999999999999999977653 9999999999999 8999
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC--CcEEe
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD--GAREY 155 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~--g~~~~ 155 (169)
|||.+||+|..+.++++|+|.|.+.+++.|||+--.+|+.+|+++.+.++|+.+++..--..-.|||.|+..+ |.++.
T Consensus 147 ~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~ 226 (254)
T KOG0184|consen 147 QLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEK 226 (254)
T ss_pred eEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcccc
Confidence 9999999999999999999999999999999999999999999999999999997643223336888999863 65544
Q ss_pred ccccc
Q 030889 156 AWRES 160 (169)
Q Consensus 156 ~~~~~ 160 (169)
-+.|+
T Consensus 227 vp~el 231 (254)
T KOG0184|consen 227 VPSEL 231 (254)
T ss_pred CcHHH
Confidence 44444
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-29 Score=190.34 Aligned_cols=161 Identities=22% Similarity=0.343 Sum_probs=149.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhcC--CCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQ-FRNGIPLTTAAAANFTRGELATALRK--SPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~l~~~~r~--rP~~v~~llaG~d~~~gp 77 (169)
|+++||+.+|+||..+|+|.+.+.+.....+.. +..++.+.|+.++++|.+.+| ++|+ .|++..+++||+|.++.|
T Consensus 76 ~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY-~rRsKmnPlwntlvVgGv~~~g~~ 154 (256)
T KOG0185|consen 76 FKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLY-ARRSKMNPLWNTLVVGGVDNTGEP 154 (256)
T ss_pred EEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHH-HhhhccCchhhheeEeeecCCCCe
Confidence 689999999999999999999999998876543 556689999999999999995 6665 899999999999977999
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFH---SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 154 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 154 (169)
+|.++|..|..++.+..|+|.|.+.+.++|++.|. ++++.+||.+++.+||+...+||+.+.++++|++|+++|+++
T Consensus 155 ~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i 234 (256)
T KOG0185|consen 155 FLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTI 234 (256)
T ss_pred eEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEe
Confidence 99999999999999999999999999999999998 579999999999999999999999999999999999999999
Q ss_pred eccccccc
Q 030889 155 YAWRESVK 162 (169)
Q Consensus 155 ~~~~~~~~ 162 (169)
-.+..+..
T Consensus 235 ~~p~qv~~ 242 (256)
T KOG0185|consen 235 SKPYQVKT 242 (256)
T ss_pred cCceeeee
Confidence 88887764
No 42
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-28 Score=184.93 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=143.1
Q ss_pred cccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEE
Q 030889 2 VLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYY 81 (169)
Q Consensus 2 ~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~ 81 (169)
.|.++|+||.+|..+|...+.+.+-.++..|+++.++.+.+-.+-+++.+.|+++ + --.++.+|++|+| ..|||||.
T Consensus 73 ~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrY-q-G~IgA~LiiGGvD-~TGpHLy~ 149 (271)
T KOG0173|consen 73 FIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRY-Q-GHIGAALILGGVD-PTGPHLYS 149 (271)
T ss_pred hcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHh-c-CcccceeEEcccc-CCCCceEE
Confidence 4789999999999999999999999999999999999999988989999988633 3 3689999999999 79999999
Q ss_pred EcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccc
Q 030889 82 IDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWR 158 (169)
Q Consensus 82 id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 158 (169)
+.|.|+....+|++.|+|+..++++||.+|++||++|||++|+.+|+...+..|..+|+|+++|+|++.+++.+.+-
T Consensus 150 i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~ 226 (271)
T KOG0173|consen 150 IHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNY 226 (271)
T ss_pred EcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777665443
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-28 Score=174.52 Aligned_cols=153 Identities=18% Similarity=0.278 Sum_probs=146.1
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+|++++|.+|+..|+|.+.++++...+.|+++.++.|-|+.+++++|..+| .+|+-||.+..++||+|++++|++.
T Consensus 43 ~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lY-ekRfgpYf~~PvVAGl~~~~kPfIc 121 (204)
T KOG0180|consen 43 FKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLY-EKRFGPYFTEPVVAGLDDDNKPFIC 121 (204)
T ss_pred eecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHH-HhhcCCcccceeEeccCCCCCeeEe
Confidence 689999999999999999999999999999999999999999999999999885 6677899999999999999999999
Q ss_pred EEcCCCCee-eeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEE
Q 030889 81 YIDYIATLH-KVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 154 (169)
Q Consensus 81 ~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 154 (169)
..|..|... ..++++.|.+++..++.+|..|+|+|..||..+.+.++|..+.+||+.+|+...+.+|+||.+.+
T Consensus 122 ~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~ 196 (204)
T KOG0180|consen 122 GMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVTK 196 (204)
T ss_pred ecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhh
Confidence 999999876 57999999999999999999999999999999999999999999999999999999999997653
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.93 E-value=2.7e-25 Score=164.45 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=113.6
Q ss_pred Ccc-cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcE
Q 030889 1 MVL-DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~ 78 (169)
++| +++++|++||..+|+|.|.+.++.+++.|+. +. ++.+++.+..+.. .+. +|+.+++|++ |+ |+
T Consensus 36 ~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~~--~~~~~~l~~~~lv~--d~---~~ 103 (172)
T PRK05456 36 RRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWRT--DRYLRRLEAMLIVA--DK---EH 103 (172)
T ss_pred EEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHHh--ccCCCccEEEEEEE--cC---Cc
Confidence 478 9999999999999999999999999999883 22 4677766655322 233 6888999994 52 69
Q ss_pred EEEEcCCCCeeee--CeeEeccchHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEE
Q 030889 79 LYYIDYIATLHKV--DKAAFGYGSYFSLSMMDRHFH-SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKI 146 (169)
Q Consensus 79 Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~ 146 (169)
||.+||.|++.+. ++.|+|+|+.+++++||++|+ ++| ||++++++|++.+.+||..++++|+|-.
T Consensus 104 ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 104 SLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred EEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999776 899999999999999999999 999 9999999999999999999999998865
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.93 E-value=1.1e-24 Score=158.06 Aligned_cols=128 Identities=26% Similarity=0.372 Sum_probs=120.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
++++++++++++|..+|++.+.++++.+++.|++.+++++++..+++.+++.++..++.||+++++|+||+|+ ++|+||
T Consensus 35 ~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~ 113 (164)
T cd01901 35 GKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLY 113 (164)
T ss_pred EEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEE
Confidence 3678899999999999999999999999999999999999999999999998874433489999999999994 899999
Q ss_pred EEcCCCCeeee-CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 030889 81 YIDYIATLHKV-DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCIL 129 (169)
Q Consensus 81 ~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~ 129 (169)
.+||+|++.+. +++++|.++..+.++|++.|+++|+++|+++++.+||.
T Consensus 114 ~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 114 YIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred EECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999985
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.93 E-value=1.2e-24 Score=160.17 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=111.0
Q ss_pred CcccC-cEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCce-eeEEEEEEeCCCCcE
Q 030889 1 MVLDS-HKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYM-VNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~-v~~llaG~d~~~gp~ 78 (169)
++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+++.+..++. ++.+|+. +.++++++| +
T Consensus 35 ~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~--~~~~~~l~a~~iv~~~~-----~ 102 (171)
T cd01913 35 RRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRT--DRYLRRLEAMLIVADKE-----H 102 (171)
T ss_pred EEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHh--ccCcCceEEEEEEeCCC-----c
Confidence 47888 999999999999999999999999999988774 44555555332 2345554 666665444 8
Q ss_pred EEEEcCCCCeeee--CeeEeccchHHHHHHHhcccCCC-CCHHHHHHHHHHHHHHHHhcccccCCCEEEEE
Q 030889 79 LYYIDYIATLHKV--DKAAFGYGSYFSLSMMDRHFHSG-MSVEEAVDLVDKCILEIRSRLVVAPPNFVIKI 146 (169)
Q Consensus 79 Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~ 146 (169)
||.+||.|++.+. ++.++|+|+.+++++||..|+++ || +.+++.+|++.|.+||+.++++|+|-.
T Consensus 103 ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 103 TLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred EEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 9999999999998 49999999999999999999995 99 569999999999999999999999865
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.92 E-value=6.3e-24 Score=156.35 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=110.4
Q ss_pred Ccc-cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcE
Q 030889 1 MVL-DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~ 78 (169)
++| +++++|+++|..+|+|.|.++++.+++.|+.+. .+.+++.++++. .++. +.+.+.++++|+| +
T Consensus 35 ~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~--~~~~~~~l~a~~iv~~~~-----~ 102 (171)
T TIGR03692 35 RRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWR--TDRYLRRLEAMLIVADKE-----T 102 (171)
T ss_pred EEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHh--hcccccccEEEEEEEcCC-----C
Confidence 478 599999999999999999999999999988633 467777777631 2233 3345777776443 8
Q ss_pred EEEEcCCCCeeee--CeeEeccchHHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEE
Q 030889 79 LYYIDYIATLHKV--DKAAFGYGSYFSLSMMDRHF-HSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKI 146 (169)
Q Consensus 79 Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~ 146 (169)
||.+||.|++.++ ++.++|+|+.+++++||..| +++|+ |++++.++++.|.+||+.++++|+|-.
T Consensus 103 ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 103 SLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred EEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 9999999999996 69999999999999999999 47777 999999999999999999999999865
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.8e-09 Score=75.98 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=101.8
Q ss_pred cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEEEc
Q 030889 4 DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYID 83 (169)
Q Consensus 4 ~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~id 83 (169)
+.+++.|++|.++|++.|.+.+..+++.|.-+--+ ..-++++-++.-.+ + |.+..-++++--+ .++-+.
T Consensus 43 ~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aavelaKdwr~Dk~--l--r~LEAmllVad~~-----~il~is 111 (178)
T COG5405 43 NGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AAVELAKDWRTDKY--L--RKLEAMLLVADKT-----HILIIT 111 (178)
T ss_pred CCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HHHHHHHhhhhhhH--H--HHHhhheeEeCCC-----cEEEEe
Confidence 45899999999999999999999999987622111 23344554444321 1 4577777777333 688899
Q ss_pred CCCCeee--eCeeEeccchHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc
Q 030889 84 YIATLHK--VDKAAFGYGSYFSLSMMDRHFHS-GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD 148 (169)
Q Consensus 84 ~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~ 148 (169)
..|.+.+ .+..|+|||..++++-.+..+.. ++| |.+++.++|..+.+-+++++++|.|-.+.
T Consensus 112 G~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 112 GNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred cCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 9998885 45999999999999999998864 665 77899999999999999999999987765
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-07 Score=70.14 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=116.0
Q ss_pred EEEEEeCChhHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHh-cC--------CCceeeEEEEEEeCCCC
Q 030889 7 KLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATAL-RK--------SPYMVNILLAGYDKETG 76 (169)
Q Consensus 7 i~~~~sG~~aD~~~l~~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~l~~~~-r~--------rP~~v~~llaG~d~~~g 76 (169)
++++.+|..|-.|.+++.+.+..+...-. .-..+++-+.+.++......-. |. --|.|++|++|.=..+-
T Consensus 45 lvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~p 124 (255)
T COG3484 45 LVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEP 124 (255)
T ss_pred EEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCC
Confidence 56788999999999999998877522111 1123466667777776554221 21 45789999999984445
Q ss_pred cEEEEEcCCCCeee----eCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 77 PSLYYIDYIATLHK----VDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 77 p~Ly~id~~G~~~~----~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
|.||.|-|.|++++ -++.-+|... +-+++|++.+..++++|||.+.++-++......+...|-.+++.+..+|-+
T Consensus 125 p~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~ 203 (255)
T COG3484 125 PRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSF 203 (255)
T ss_pred ceeEEEccCCCeeecCCCCceeEccccc-cCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccce
Confidence 78999999999997 4799999654 779999999999999999999999999999999988888999999998865
Q ss_pred EE
Q 030889 153 RE 154 (169)
Q Consensus 153 ~~ 154 (169)
..
T Consensus 204 ~v 205 (255)
T COG3484 204 SV 205 (255)
T ss_pred ee
Confidence 53
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=94.09 E-value=0.24 Score=37.19 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=44.8
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC
Q 030889 100 SYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD 150 (169)
Q Consensus 100 ~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 150 (169)
.+.+...|+++|++.|+++++.++..++|..+...-..-++.+++...++.
T Consensus 130 K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 467888999999999999999999999999998877777888998888764
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=90.57 E-value=0.41 Score=33.84 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=39.7
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHH
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVD 122 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 122 (169)
..+|-+|.....+|-..|.|+..+.+.+-..|-.++|.|||..
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 3688899999999999999999999999999999999999876
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.53 E-value=0.94 Score=35.37 Aligned_cols=129 Identities=11% Similarity=0.119 Sum_probs=79.3
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH---h--cC--CCceeeEEEEEEeCCC-----CcEEEE-------EcCCCCeee--
Q 030889 32 YQFRNGIPLTTAAAANFTRGELATA---L--RK--SPYMVNILLAGYDKET-----GPSLYY-------IDYIATLHK-- 90 (169)
Q Consensus 32 ~~~~~~~~~~~~~la~~l~~~l~~~---~--r~--rP~~v~~llaG~d~~~-----gp~Ly~-------id~~G~~~~-- 90 (169)
.++-.|+--|-++|+++... +.-. + |. |-..-+++++-+...+ .-++|. ++..|+-..
T Consensus 36 ekLYsGeIkteEEL~r~aee-l~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~ 114 (293)
T COG4079 36 EKLYSGEIKTEEELARKAEE-LGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTST 114 (293)
T ss_pred HHhhcCccccHHHHHHHHHH-cCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEee
Confidence 34446666677888887776 3111 0 11 4444555555554211 113333 333443221
Q ss_pred -----eCeeEec--cchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC--CcEEecccccc
Q 030889 91 -----VDKAAFG--YGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD--GAREYAWRESV 161 (169)
Q Consensus 91 -----~~~~a~G--~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~--g~~~~~~~~~~ 161 (169)
....+.| .-.+.+..+|.+.|.+.++++++.++..++|..+...-..-+..+++..+++. .+.++-+.+|.
T Consensus 115 ~~g~g~aiIv~Gnk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie 194 (293)
T COG4079 115 SQGKGSAIIVFGNKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIE 194 (293)
T ss_pred ecCCCceEEEECcHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHH
Confidence 1233444 23466788899999999999999999999999998766677888999988864 35554444443
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=67.98 E-value=17 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 112 HSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 112 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
++.+|+|+|.+++..++..+.+ .+..+.+.+++..|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCC
Confidence 4679999999999999999864 38899999999987
No 54
>PRK09732 hypothetical protein; Provisional
Probab=66.37 E-value=19 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
+.||++.|.+++..++..+.+ .+..+.|++++..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~----~g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQK----NNWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHH----hCCCEEEEEEcCCCC
Confidence 569999999999999999975 366899999999883
No 55
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=63.90 E-value=30 Score=24.73 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=26.4
Q ss_pred EEEEEEeCCCCcEEEEEcCCCCeeeeCeeEeccchHHHH
Q 030889 66 ILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSL 104 (169)
Q Consensus 66 ~llaG~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~ 104 (169)
.++.|+||-..--+-.+|..|.+......=.-+.+..+.
T Consensus 32 ~lIVGiDPG~ttgiAildL~G~~l~l~S~R~~~~~evi~ 70 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIAILDLDGELLDLKSSRNMSRSEVIE 70 (138)
T ss_pred CEEEEECCCceeEEEEEecCCcEEEEEeecCCCHHHHHH
Confidence 588999986667788999999987654433333333333
No 56
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=61.38 E-value=13 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=35.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEeccccccc
Q 030889 111 FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAWRESVK 162 (169)
Q Consensus 111 ~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~~~~~~ 162 (169)
..+.+|.|+..+-+++..... .+..+.+.|++.+| +.+-+++|+.+
T Consensus 16 ~d~~~s~e~L~~~v~~~c~~~------~~q~ft~kw~DEEGDp~tiSS~~EL~E 63 (83)
T cd06404 16 IDPSISLEELCNEVRDMCRFH------NDQPFTLKWIDEEGDPCTISSQMELEE 63 (83)
T ss_pred cCCCcCHHHHHHHHHHHhCCC------CCCcEEEEEECCCCCceeecCHHHHHH
Confidence 445788888888877766542 46689999999987 88888887653
No 57
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=60.87 E-value=20 Score=23.24 Aligned_cols=40 Identities=23% Similarity=0.108 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
-.+|.+||.+.+++.|..... ++.=-+++.+.+|+...-+
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp 72 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHP 72 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEES
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcC
Confidence 459999999999999988753 3344788889999766554
No 58
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=58.66 E-value=17 Score=25.31 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEE
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 154 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~ 154 (169)
|.+|.++|.+++..++..+.++ +.++-|++++..|...
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLL 38 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EE
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEE
Confidence 3478999999999999999864 4468999999988443
No 59
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=54.86 E-value=8.1 Score=21.98 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=22.7
Q ss_pred EeccchHHHHHHHhccc-CCCCCHHHHHHHHHH
Q 030889 95 AFGYGSYFSLSMMDRHF-HSGMSVEEAVDLVDK 126 (169)
Q Consensus 95 a~G~g~~~~~~~Le~~~-~~~~s~eea~~l~~~ 126 (169)
+.|.....+...+++.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35777888888888877 788998887766554
No 60
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=49.67 E-value=42 Score=20.69 Aligned_cols=30 Identities=13% Similarity=-0.096 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 030889 22 TEFIQKNVSLYQFRNGIPLTTAAAANFTRG 51 (169)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 51 (169)
++.+++-........|+.|+.+.+|..+.-
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 344555556667788999999999977653
No 61
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=44.99 E-value=36 Score=20.15 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRL 135 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d 135 (169)
.+||.|+|.++..+.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998877654
No 62
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=42.75 E-value=36 Score=22.90 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=27.9
Q ss_pred EeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHh
Q 030889 95 AFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRS 133 (169)
Q Consensus 95 a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~ 133 (169)
.+|++..++.-+++.. .+.+++.++|.+++.+.+..+..
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ 54 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAK 54 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3577766666666654 45899999999999999988765
No 63
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=41.66 E-value=64 Score=19.66 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH
Q 030889 29 VSLYQFRNGIPLTTAAAANFTR 50 (169)
Q Consensus 29 ~~~~~~~~~~~~~~~~la~~l~ 50 (169)
+..|...+|.+||+.++++.+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3455566899999999887664
No 64
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=41.29 E-value=57 Score=21.12 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC-CcEEeccc
Q 030889 115 MSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD-GAREYAWR 158 (169)
Q Consensus 115 ~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~-g~~~~~~~ 158 (169)
+-.+|+..++..|+...- |-++-++++|.+...+ +..++...
T Consensus 34 l~qqEvLnvA~MAvQT~Q--~~L~lNGv~V~v~~~~~~i~V~~~~ 76 (82)
T PF11773_consen 34 LQQQEVLNVAQMAVQTGQ--DHLSLNGVEVQVERTQKGIIVYEGG 76 (82)
T ss_pred HHHHHHHHHHHHHHHhCc--ceEEEcCeEEEEEEcCCeEEEEeCC
Confidence 566899999999998774 3378889999999876 56655443
No 65
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=40.80 E-value=73 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.000 Sum_probs=31.1
Q ss_pred EEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 030889 9 IAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPY 62 (169)
Q Consensus 9 ~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~ 62 (169)
-+..|..+|.+.-+..+|.........|.+ ..+.++..+.++|+.+.|.||.
T Consensus 96 ~Asgg~hsdYR~kL~qiR~iy~~Elekyeq--aCneftthV~nlL~eQsr~RPi 147 (334)
T KOG0774|consen 96 AASGGDHSDYRAKLLQIRQIYHNELEKYEQ--ACNEFTTHVMNLLREQSRTRPI 147 (334)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCCC
Confidence 355677889988888888765443333333 2345555566656555555665
No 66
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=40.32 E-value=1.2e+02 Score=20.81 Aligned_cols=51 Identities=18% Similarity=0.377 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEecccccccC
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYAWRESVKD 163 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~~~~~~~~ 163 (169)
.+++.+..++.+.++|..+..+..-...+++|-+=.+.| ++.+..-++.+.
T Consensus 13 k~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g~i~v~~~~~VV~d 64 (122)
T PF08529_consen 13 KGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTGEIKVYRKKEVVED 64 (122)
T ss_dssp CTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTTEEEEEEEEEEETT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCeEEEEEEeeecCC
Confidence 689999999999999999998775455677776666556 665555554433
No 67
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=39.98 E-value=29 Score=27.92 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=44.5
Q ss_pred EEEEeCCCCc-EEEEEcCCCCeeeeCeeEeccc-hHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhcccccCCCEEE
Q 030889 68 LAGYDKETGP-SLYYIDYIATLHKVDKAAFGYG-SYFSLSMMDRHFHS-GMSVEEAVDLVDKCILEIRSRLVVAPPNFVI 144 (169)
Q Consensus 68 laG~d~~~gp-~Ly~id~~G~~~~~~~~a~G~g-~~~~~~~Le~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i 144 (169)
+.|.|+.+|- -....-..|-+... ..|.. -....+-|-+.|.+ ++|+|+|+.|..-=-....+-| ++..|..
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~hp~--sge~I~a 151 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGKHPD--SGEEISA 151 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchhhCCCCC--CCcEEEe
Confidence 3467765554 44466677765543 45555 55556667777875 7999999998765544444322 4555554
No 68
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=38.35 E-value=35 Score=23.07 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.6
Q ss_pred CCcEEEEEcCCCCeeee
Q 030889 75 TGPSLYYIDYIATLHKV 91 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~~~ 91 (169)
++|+|+++||.+...+.
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 67999999999987663
No 69
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.99 E-value=69 Score=19.10 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcc
Q 030889 101 YFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRL 135 (169)
Q Consensus 101 ~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d 135 (169)
+.+-.-+++....+||--||+.++...|+.-...+
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhccc
Confidence 34455566667789999999999999999887544
No 70
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=36.77 E-value=1.1e+02 Score=19.97 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.9
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 030889 100 SYFSLSMMDRHFHSGMSVEEAVDLVDKCILEI 131 (169)
Q Consensus 100 ~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~ 131 (169)
-..+..+|++.-.|++|+++.+++=.+++...
T Consensus 31 lerakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45678888998899999999988766665544
No 71
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=36.20 E-value=1.4e+02 Score=21.50 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=42.4
Q ss_pred cEEE-EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 030889 77 PSLY-YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 77 p~Ly-~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~ 132 (169)
..|| .+| .|......+-..|.+...+-+-+=..+-.+.|.+||.++.......+.
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455 456 677777889999988888888777778889999999999955555554
No 72
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=35.29 E-value=58 Score=18.71 Aligned_cols=32 Identities=6% Similarity=0.014 Sum_probs=24.5
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhccc
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHF 111 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 111 (169)
|.|+|+|.+...--...|+....+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988877778877777777666643
No 73
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=32.86 E-value=2e+02 Score=22.89 Aligned_cols=58 Identities=22% Similarity=0.103 Sum_probs=40.5
Q ss_pred CeeEeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 92 DKAAFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 92 ~~~a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
-+.++|.|..+++..+-.. .+.+++++||.+.+.+-+..... ..+...-+..|+++|-
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 4568999988887766543 34689999999888777654432 2345567788888873
No 74
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=32.61 E-value=87 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=21.0
Q ss_pred CCceeeEEEEEEeCCCCcEEEEEcCCCCeee
Q 030889 60 SPYMVNILLAGYDKETGPSLYYIDYIATLHK 90 (169)
Q Consensus 60 rP~~v~~llaG~d~~~gp~Ly~id~~G~~~~ 90 (169)
||+.|.-+|=-.-+.+|.=.+..++.|+.+-
T Consensus 375 RPiRVCGMVkNeGEPGGGPFwv~~~dG~~SL 405 (513)
T PF14134_consen 375 RPIRVCGMVKNEGEPGGGPFWVKNEDGTVSL 405 (513)
T ss_pred CCceeeeccccCCCCCCCCeEEECCCCCEee
Confidence 9999876665554344545667889997653
No 75
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.01 E-value=1.1e+02 Score=17.72 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=20.8
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 030889 103 SLSMMDRHFHSGMSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 103 ~~~~Le~~~~~~~s~eea~~l~~~~l~~~~ 132 (169)
...++++.-++++|+++++.+-.+++....
T Consensus 8 Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 8 LEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 445556666789999999998888877654
No 76
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=31.79 E-value=1.1e+02 Score=20.78 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCHHHH
Q 030889 19 VQFTEFIQKNVSLYQFRNGI-PLTTAAA 45 (169)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 45 (169)
..+++.++.+++.|++.+++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 56788899999999999887 6665544
No 77
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=30.94 E-value=80 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=28.5
Q ss_pred eCChhHHHHHHHHHHHHHHHHHH--Hh----C---C-CCCHHHHHHHHHHHHHHH
Q 030889 12 SGEPGDRVQFTEFIQKNVSLYQF--RN----G---I-PLTTAAAANFTRGELATA 56 (169)
Q Consensus 12 sG~~aD~~~l~~~~~~~~~~~~~--~~----~---~-~~~~~~la~~l~~~l~~~ 56 (169)
.|..-|+..+.+.++..+..+-. -+ . . .+|++.+|.++...+...
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~ 97 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEK 97 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHH
Confidence 47777999888888875543322 22 0 1 289999999999988643
No 78
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=30.24 E-value=2.6e+02 Score=21.73 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC----CCCHH-HHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcEEEEEcCCCCee-
Q 030889 17 DRVQFTEFIQKNVSLYQFRNGI----PLTTA-AAANFTRGELATALRK-SPYMVNILLAGYDKETGPSLYYIDYIATLH- 89 (169)
Q Consensus 17 D~~~l~~~~~~~~~~~~~~~~~----~~~~~-~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~Ly~id~~G~~~- 89 (169)
....+.+.+...+......|.. +.+.+ .++..++..+...++. -||.+.+.+-.|+....+.+ .++..=.+.
T Consensus 151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~-~i~~~i~v~~ 229 (270)
T TIGR00436 151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLL-KIHALISVER 229 (270)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeE-EEEEEEEECc
Confidence 3456666665554322211221 12222 3455666655433433 89999999999985443444 244332222
Q ss_pred -eeCeeEeccchHHHHHH
Q 030889 90 -KVDKAAFGYGSYFSLSM 106 (169)
Q Consensus 90 -~~~~~a~G~g~~~~~~~ 106 (169)
..+...+|.+.+.++.+
T Consensus 230 ~s~k~iiig~~g~~ik~i 247 (270)
T TIGR00436 230 ESQKKIIIGKNGSMIKAI 247 (270)
T ss_pred CCceeEEEcCCcHHHHHH
Confidence 36799999988766543
No 79
>PRK02487 hypothetical protein; Provisional
Probab=29.57 E-value=2.1e+02 Score=20.72 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 111 FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 111 ~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
-.+.+|.++|.+++..+...+.++ +.++-|+++. .|
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G 54 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NG 54 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CC
Confidence 347899999999999999999643 5688898885 66
No 80
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=29.39 E-value=95 Score=21.02 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC-----CCcEEecccccccC
Q 030889 117 VEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK-----DGAREYAWRESVKD 163 (169)
Q Consensus 117 ~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~-----~g~~~~~~~~~~~~ 163 (169)
+-.|.++.+++|+..-.++ ...++.+++.+. +.++.|++.|+..|
T Consensus 20 c~~a~eI~~rvLKKfg~~~--~~~~~~~~v~d~~~~~~~~~~~LsD~EL~~I 69 (105)
T PF14847_consen 20 CFNAQEIKRRVLKKFGLPE--HPRNYCFYVLDGESPDPSNCRPLSDVELVTI 69 (105)
T ss_dssp --HHHHHHHHHHHHHTSS----CCCEEEEEE-S-----SSEEEE-SSHHHHH
T ss_pred CCCHHHHHHHHHHHcCCcc--ccccceEEEecccccccccceECcHHHHHHH
Confidence 3457888889999887665 566899999987 46999998887654
No 81
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=29.29 E-value=1.2e+02 Score=17.74 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 030889 102 FSLSMMDRHFHSGMSVEEAVDLVDKCILEIRS 133 (169)
Q Consensus 102 ~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~ 133 (169)
.+-.-++++...+||--||+.++.+-|+....
T Consensus 15 ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 15 QAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34444555666799999999999999987754
No 82
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=29.15 E-value=56 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=42.3
Q ss_pred eeEEEEEEeCCCCcEEEEEcCCCCee---eeCeeEeccchHHHHHHHhcc---cCCCCCHHHHHHHHHHHH
Q 030889 64 VNILLAGYDKETGPSLYYIDYIATLH---KVDKAAFGYGSYFSLSMMDRH---FHSGMSVEEAVDLVDKCI 128 (169)
Q Consensus 64 v~~llaG~d~~~gp~Ly~id~~G~~~---~~~~~a~G~g~~~~~~~Le~~---~~~~~s~eea~~l~~~~l 128 (169)
+-+|++|.| +++. +++..... .-....+|.....+...|++. +...-++|+|++.+++..
T Consensus 346 v~lI~GG~~-Kg~d----f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDD-KGAD----FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCC-CCCC----hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 667888888 4444 33433333 345889999999999999887 556678888888776644
No 83
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.94 E-value=40 Score=22.21 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=12.9
Q ss_pred CCcEEEEEcCCCCeee
Q 030889 75 TGPSLYYIDYIATLHK 90 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~~ 90 (169)
++|+|+++||.--..+
T Consensus 24 d~PrL~yvdp~~~~~K 39 (89)
T cd01262 24 NGPRLIYVDPVKKVVK 39 (89)
T ss_pred cCceEEEEcCCcCeEE
Confidence 5999999999965554
No 84
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=28.59 E-value=2.3e+02 Score=22.57 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=38.1
Q ss_pred CeeEeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 92 DKAAFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 92 ~~~a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
-..++|.|..+++..+-.. .+.+++++||.+.+++-+.... +...-+..|+++|
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G 235 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSG 235 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCC
Confidence 4778999998888776653 3468899999998777665432 3344666677776
No 85
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=27.87 E-value=70 Score=17.81 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 030889 115 MSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 115 ~s~eea~~l~~~~l~~~~ 132 (169)
=|++||++.++++|....
T Consensus 29 ~t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 29 DTLEEALENAKEALELWL 46 (48)
T ss_dssp SSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 378888888888887653
No 86
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=27.79 E-value=2.5e+02 Score=22.18 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=39.0
Q ss_pred CeeEeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 92 DKAAFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 92 ~~~a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
-+.++|.|...++..+-.. .+.+++++||.+.+++-+... .+...-+..++++|-
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 4778899998888776653 346789999988777666543 233456778888874
No 87
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=27.73 E-value=1.2e+02 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=22.8
Q ss_pred EEEEeCCCCcEEEEEcCCCCeeee---CeeEeccch
Q 030889 68 LAGYDKETGPSLYYIDYIATLHKV---DKAAFGYGS 100 (169)
Q Consensus 68 laG~d~~~gp~Ly~id~~G~~~~~---~~~a~G~g~ 100 (169)
++|.|. .+..+|..|.+..+ +.||.|.|+
T Consensus 104 IGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~ 135 (262)
T TIGR02261 104 IGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ 135 (262)
T ss_pred eCCCce----EEEEEcCCCcEeeEEecCcccccccH
Confidence 577773 57888999987764 788889887
No 88
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=27.64 E-value=41 Score=28.59 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHH
Q 030889 103 SLSMMDRHFHSGMSVEEAVDLVDK 126 (169)
Q Consensus 103 ~~~~Le~~~~~~~s~eea~~l~~~ 126 (169)
++.-=+-.||+++|.|+||.|.++
T Consensus 207 V~DTSKyWYKP~isREQAIalLrd 230 (483)
T KOG1930|consen 207 VKDTSKYWYKPNISREQAIALLRD 230 (483)
T ss_pred eecccccccCCCCCHHHHHHHhhc
Confidence 333334457899999999998765
No 89
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=27.23 E-value=1.3e+02 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEecccccccC
Q 030889 119 EAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAWRESVKD 163 (169)
Q Consensus 119 ea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~~~~~~~ 163 (169)
||++..+..|......|.+.-...++.+||-+| ..+.+..++.+.
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 677777888888878888888999999999885 334444444443
No 90
>PRK11325 scaffold protein; Provisional
Probab=26.90 E-value=1.7e+02 Score=20.32 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=39.2
Q ss_pred EEE-EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 030889 78 SLY-YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEI 131 (169)
Q Consensus 78 ~Ly-~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~ 131 (169)
.|| .+|+.|.+.+..|.+.|.....+-.-+=..+-.+.|++||..+..+.+...
T Consensus 42 ~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 42 KLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 444 566667777888888887777766666666667889999999877655443
No 91
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=26.83 E-value=1.9e+02 Score=19.83 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=43.2
Q ss_pred EEeCCCCcEE---EEEcCC-CCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHh
Q 030889 70 GYDKETGPSL---YYIDYI-ATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRS 133 (169)
Q Consensus 70 G~d~~~gp~L---y~id~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~ 133 (169)
+.++.-|-.+ ..+|.. |.+.+-.|.+.|..-..+-.-+=..+-.+.|++||.++..+-+.....
T Consensus 29 ~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 29 AGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred ecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 3444445444 368888 677788899888776666655555555678999998877666655543
No 92
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=1.1e+02 Score=26.71 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=36.9
Q ss_pred EeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceee
Q 030889 11 ASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVN 65 (169)
Q Consensus 11 ~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~ 65 (169)
.+|..+=+-.+++.++..++.|..-.+..++ ..|...|+.++-+-.++|||.++
T Consensus 249 I~GsnaRCIa~L~afqevi~Dy~TP~~ktls-rdLt~~i~~qv~~L~~cRPLs~S 302 (556)
T KOG1467|consen 249 ISGSNARCIAMLQAFQEVIKDYTTPPEKTLS-RDLTAAISPQVSFLTQCRPLSIS 302 (556)
T ss_pred cCCccHHHHHHHHHHHHHHHhccCCCccccc-hhhHhhhhhHHHHHhhcCCccch
Confidence 4677888888889898888888765555443 34555566555322356899776
No 93
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=24.62 E-value=98 Score=15.84 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=16.2
Q ss_pred eEEEEEEeCCCCcEEEEEcCCCC
Q 030889 65 NILLAGYDKETGPSLYYIDYIAT 87 (169)
Q Consensus 65 ~~llaG~d~~~gp~Ly~id~~G~ 87 (169)
+..+-|.- -+.|+||.|-.+|.
T Consensus 5 ~~~v~G~r-Pg~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGAR-PGSPFLFTIPATGE 26 (29)
T ss_pred cCcEEccc-CCCcEEEEeeccCc
Confidence 33456666 48899999988885
No 94
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=24.18 E-value=1.3e+02 Score=19.64 Aligned_cols=42 Identities=24% Similarity=0.151 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEeccccccc
Q 030889 115 MSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAWRESVK 162 (169)
Q Consensus 115 ~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~~~~~~ 162 (169)
.+.++..+.+.+.+.. ..+.++.|.+.+.+| +.+-+.+|...
T Consensus 27 ~s~~~L~~~V~~~f~~------l~~~~ftlky~DeeGDlvtIssdeEL~~ 70 (87)
T cd06402 27 TSYEYLVEKVAAVFPS------LRGKNFQLFWKDEEGDLVAFSSDEELVM 70 (87)
T ss_pred cCHHHHHHHHHHHccc------cCCCcEEEEEECCCCCEEeecCHHHHHH
Confidence 5666666666655532 245799999999988 88888877653
No 95
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=23.90 E-value=1.6e+02 Score=18.31 Aligned_cols=39 Identities=3% Similarity=-0.001 Sum_probs=31.3
Q ss_pred eccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 030889 96 FGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSR 134 (169)
Q Consensus 96 ~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~ 134 (169)
.|+-...+..+++..|.-+.+....-..+..+|+.+.+.
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~ 58 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEK 58 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHC
Confidence 466778899999999976777666778899999988764
No 96
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=23.23 E-value=1.3e+02 Score=23.14 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=30.3
Q ss_pred EeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHh
Q 030889 95 AFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRS 133 (169)
Q Consensus 95 a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~ 133 (169)
.+|+|-.+..-+++.. -+.+++.++|.+++.+.+..+.+
T Consensus 151 lsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~ 193 (245)
T TIGR00112 151 LSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAAK 193 (245)
T ss_pred hccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3678877777666654 34799999999999999986654
No 97
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=23.12 E-value=3.5e+02 Score=20.71 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=58.2
Q ss_pred CCceeeEEEEEEeCCCCcEEEEEcCCC-Ceee----eCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhc
Q 030889 60 SPYMVNILLAGYDKETGPSLYYIDYIA-TLHK----VDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSR 134 (169)
Q Consensus 60 rP~~v~~llaG~d~~~gp~Ly~id~~G-~~~~----~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~ 134 (169)
-||.. ..-.+..+..+-++|..- .+.+ --+-.-|.-+.+.+.+++-. -..++........++...+.
T Consensus 86 yPF~l----~~~~~~~~~~~v~iD~~s~~v~~~~G~~LFd~~G~~T~~l~~~~~~L----~~~~~~~~~T~~f~~~L~~~ 157 (221)
T PF07277_consen 86 YPFIL----AASGEEEDQLVVCIDEDSPLVSEDEGEPLFDEDGEPTEYLQQVLNFL----QQYQQGRQQTQAFIKALAEL 157 (221)
T ss_pred CCcEE----eccCCCCCceEEEEECCCCCcCCCCCccCcCCCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHc
Confidence 58877 111213344444555542 2211 22446677777766665552 13455667777788888888
Q ss_pred ccccCCCEEEEEEc-----CCCcEEecccccccCCC
Q 030889 135 LVVAPPNFVIKIVD-----KDGAREYAWRESVKDTP 165 (169)
Q Consensus 135 d~~~~~~i~i~~i~-----~~g~~~~~~~~~~~~~~ 165 (169)
+......++|..-+ -.|+..++++-+++|.+
T Consensus 158 ~Ll~~~~l~v~~~~g~~~~l~G~~~Vde~kL~~L~d 193 (221)
T PF07277_consen 158 GLLEPWTLTVTLDDGEKHNLNGFYTVDEEKLNALSD 193 (221)
T ss_pred CCCcccEEEEEeCCCCeeeccCceEECHHHHhcCCH
Confidence 88888787776632 25777777777777654
No 98
>PHA01082 putative transcription regulator
Probab=23.07 E-value=1.2e+02 Score=21.31 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLV 136 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~ 136 (169)
=++|.|||-++..+..+.+.+.|.
T Consensus 29 CgLsveeaa~LCfKsVrtVk~WD~ 52 (133)
T PHA01082 29 CGLSVEEAAKLCFKTVSEVKQWDA 52 (133)
T ss_pred cCccHHHHHHHHHHhHHHHhhccC
Confidence 379999999999999999988873
No 99
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=22.97 E-value=79 Score=16.95 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHH
Q 030889 114 GMSVEEAVDLVD 125 (169)
Q Consensus 114 ~~s~eea~~l~~ 125 (169)
++|.|||++..+
T Consensus 22 ~LtpEDAvEaLi 33 (35)
T PF08383_consen 22 GLTPEDAVEALI 33 (35)
T ss_pred CCCHHHHHHHHh
Confidence 589999998654
No 100
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=22.73 E-value=1.4e+02 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 030889 101 YFSLSMMDRHFHSGMSVEEAVDLVDKCILE 130 (169)
Q Consensus 101 ~~~~~~Le~~~~~~~s~eea~~l~~~~l~~ 130 (169)
..++.+.+..|...++.++.+++|.+.|..
T Consensus 42 ~~Iq~If~~SF~e~~~~e~C~~iA~klL~i 71 (79)
T PF08958_consen 42 KKIQSIFEFSFGEWLPIEECEEIAEKLLAI 71 (79)
T ss_dssp HHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHhH
Confidence 445566666666777888888888777753
No 101
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=22.24 E-value=1.5e+02 Score=19.44 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEecccccc
Q 030889 112 HSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYAWRESV 161 (169)
Q Consensus 112 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~~~~~~ 161 (169)
...|+..|.+++.++=++.. .+..++-+..+...| .++++..|-+
T Consensus 20 sS~~tt~eVI~~LL~KFkv~-----~~p~~FALy~vh~~Ge~rkL~d~E~P 65 (87)
T cd01784 20 NSTMTTPQVLKLLLNKFKIE-----NSAEEFALYIVHTSGEKRKLKATDYP 65 (87)
T ss_pred ecCCCHHHHHHHHHHhcccc-----CCHHHeEEEEEeeCCCEEECCCcCCC
Confidence 35688888888887777665 357788898888877 5788877754
No 102
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.08 E-value=2.2e+02 Score=26.08 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=54.0
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEEEcCCCC--eeeeCeeEeccchHHHHHHHhcccC
Q 030889 35 RNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIAT--LHKVDKAAFGYGSYFSLSMMDRHFH 112 (169)
Q Consensus 35 ~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~id~~G~--~~~~~~~a~G~g~~~~~~~Le~~~~ 112 (169)
..|+++....|.++.+.++| -.+-.-|-|-.+++.+= -+||-||+.|..|- +.++...|.- --.....+-+.++
T Consensus 210 ksgEeIl~a~LS~FY~ll~Q-~Lq~kdyvchpmLasl~-ln~p~LFccdLkGId~llP~Fi~ALd--~il~dre~~rkfk 285 (1215)
T KOG3652|consen 210 KSGEEILNAQLSNFYALLFQ-CLQEKDYVCHPMLASLF-LNGPNLFCCDLKGIDSLLPHFIFALD--IILIDREKLRKFK 285 (1215)
T ss_pred cCcccccHHHHHHHHHHHHH-HHhhcccccchhheeee-ecCCceeeecCCchhHhhHHHHHHHH--hhhccHHHhhhcc
Confidence 46788999999999988775 33223455555555554 46888999999993 4444433321 0111111111222
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 030889 113 SGMSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~ 132 (169)
.-.+.-|..+-.+++|..+.
T Consensus 286 S~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 286 SISNETELRRACINALLSLI 305 (1215)
T ss_pred ccCCHHHHHHHHHHHHHHhc
Confidence 22346666666666666654
No 103
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.98 E-value=1.2e+02 Score=25.88 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=69.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCC-------CC
Q 030889 5 SHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGI-PLTTAAAANFTRGELATALRKSPYMVNILLAGYDKE-------TG 76 (169)
Q Consensus 5 ~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~-------~g 76 (169)
|-|+.+=+|..--.-+++=.+...+++-+.-+.- -.|.++||..|+.....-.+.-.+-|..|+||.|-. ..
T Consensus 100 dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kk 179 (476)
T KOG0330|consen 100 DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKK 179 (476)
T ss_pred cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcC
Confidence 4466777777766677776666666543332332 235689999999977422244667799999999842 57
Q ss_pred cEEEEEcCCCCeeeeCeeEeccchHHHH-HHHhcccC-CCCCHHHHHHHHHHHHH
Q 030889 77 PSLYYIDYIATLHKVDKAAFGYGSYFSL-SMMDRHFH-SGMSVEEAVDLVDKCIL 129 (169)
Q Consensus 77 p~Ly~id~~G~~~~~~~~a~G~g~~~~~-~~Le~~~~-~~~s~eea~~l~~~~l~ 129 (169)
|++. +-..|..++.---.-|..-..++ =+|++.-+ -||+.++-++-+++.+-
T Consensus 180 Phil-VaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 180 PHIL-VATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred CCEE-EeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 8873 34445554432222222222111 11111111 25666666666655543
No 104
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.91 E-value=2.1e+02 Score=17.75 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 114 GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 114 ~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
+|+.+||+..+.+.|..+..+. .-.+.+|+=.|
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~~-----~~~~~II~G~G 37 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQRG-----IRELRIITGKG 37 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHTT-----HSEEEEE--ST
T ss_pred CCcHHHHHHHHHHHHHHHHHcC-----CCEEEEEeccC
Confidence 5899999999999999886543 24555666433
No 105
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=21.78 E-value=1.1e+02 Score=16.20 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=8.9
Q ss_pred EEEEcCCCCeeeeCeeEec
Q 030889 79 LYYIDYIATLHKVDKAAFG 97 (169)
Q Consensus 79 Ly~id~~G~~~~~~~~a~G 97 (169)
+-.+||.|....+.+-+.|
T Consensus 8 ~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 8 TSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred EEEEcCCCCEEEEEECCCC
Confidence 3344555555544444443
No 106
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=21.62 E-value=4.2e+02 Score=22.46 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCeee-eCeeEeccchHHHHHHHhcccC------C--------CCCHHHHHHHHHHHHHHHHhcccccCC
Q 030889 76 GPSLYYIDYIATLHK-VDKAAFGYGSYFSLSMMDRHFH------S--------GMSVEEAVDLVDKCILEIRSRLVVAPP 140 (169)
Q Consensus 76 gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~------~--------~~s~eea~~l~~~~l~~~~~~d~~~~~ 140 (169)
.|-+..-..+|..+. -.+.+-+.++..+..+|++... | ..|.++.+++++.||+.+.+++
T Consensus 137 ~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~----- 211 (407)
T COG0538 137 VDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVKKIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENK----- 211 (407)
T ss_pred CCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccceEecCCCCceEEEecCchhhHHHHHHHHHHHHHcC-----
Confidence 455555666776554 4666677788888888888664 1 3799999999999999998654
Q ss_pred CEEEEEEcCCC
Q 030889 141 NFVIKIVDKDG 151 (169)
Q Consensus 141 ~i~i~~i~~~g 151 (169)
...|..++|..
T Consensus 212 r~~VtlvhKgn 222 (407)
T COG0538 212 RKSVTLVHKGN 222 (407)
T ss_pred CceEEEEecCe
Confidence 45667777654
No 107
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=21.31 E-value=3.4e+02 Score=19.89 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCCeeeeCeeEec-cchHHHHHHHhcccC--------------------CCCCHHHHHHHHHHHHHHHHhc
Q 030889 76 GPSLYYIDYIATLHKVDKAAFG-YGSYFSLSMMDRHFH--------------------SGMSVEEAVDLVDKCILEIRSR 134 (169)
Q Consensus 76 gp~Ly~id~~G~~~~~~~~a~G-~g~~~~~~~Le~~~~--------------------~~~s~eea~~l~~~~l~~~~~~ 134 (169)
+-.+..+-|=|....+.-...| ..++.+..++++.++ .+.|++.|.+.+++.|......
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4457777788877777777777 666666666665442 3588999999999999776544
Q ss_pred c
Q 030889 135 L 135 (169)
Q Consensus 135 d 135 (169)
+
T Consensus 151 ~ 151 (158)
T PRK02260 151 N 151 (158)
T ss_pred C
Confidence 3
No 108
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=21.26 E-value=52 Score=29.04 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=46.6
Q ss_pred eCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEEEEcC
Q 030889 12 SGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDY 84 (169)
Q Consensus 12 sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly~id~ 84 (169)
+|..+.-+++++.-..+-..++-.-+.+++++.+.....+.+.|..+.+.+.+.=.++|+|++....+-.+-+
T Consensus 80 TGRSpkDKfIV~~~~~~d~i~Wg~vN~p~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~~~l~vRvit~ 152 (561)
T PTZ00311 80 TGRSPKDKRIVKEDSSEDDIWWGKVNIPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPKYRLKVRVITT 152 (561)
T ss_pred cCCCCCceEEeCCCCcccccccCccCccCCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcccceeEEEEec
Confidence 4555555555544333333333445778999998888888774333457899999999999865544444433
No 109
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=21.01 E-value=2.9e+02 Score=22.49 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=37.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 109 RHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 109 ~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
..+..+++.++..+++.++-..+. -++..+++.+++-.|+..+..
T Consensus 114 ~~~g~~ls~~~l~~la~~~e~~vq----G~~Sg~D~a~~~~gg~v~~~~ 158 (307)
T COG1577 114 AYFGVELSPEELAKLANKVELIVQ----GKASGIDIATITYGGLVAFKK 158 (307)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHc----CCCCcccceEEEeCCEEEEec
Confidence 346689999999999999998886 367789999999998766665
No 110
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.98 E-value=2.3e+02 Score=22.94 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=24.8
Q ss_pred eeEEEEEEeCCCCcEEEEEcCCCCeeee---CeeEeccch
Q 030889 64 VNILLAGYDKETGPSLYYIDYIATLHKV---DKAAFGYGS 100 (169)
Q Consensus 64 v~~llaG~d~~~gp~Ly~id~~G~~~~~---~~~a~G~g~ 100 (169)
.-+=++|.|. .+..+|..|.+..+ +.||.|.|+
T Consensus 128 tIIDIGGQDs----K~I~~d~~G~v~dF~MNdkCAAGTGr 163 (293)
T TIGR03192 128 TILDMGGQDC----KAIHCDEKGKVTNFLMNDKCAAGTGR 163 (293)
T ss_pred EEEEeCCCce----EEEEEcCCCcEeeeeecCcccccccH
Confidence 4444688883 57888999987764 688889887
No 111
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=20.89 E-value=1.5e+02 Score=15.60 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 030889 101 YFSLSMMDRHFHSGMSVEEAVDLVDKCI 128 (169)
Q Consensus 101 ~~~~~~Le~~~~~~~s~eea~~l~~~~l 128 (169)
+.=-.-|+..-+.+.|..||...++-|+
T Consensus 4 e~WC~~m~~kpK~dWtanea~~fAKhCv 31 (32)
T PF11216_consen 4 EAWCEDMKEKPKGDWTANEAADFAKHCV 31 (32)
T ss_pred HHHHHHHhhCCcccCcHhHHHHHHHhhc
Confidence 3334455666677899999999998775
No 112
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=20.79 E-value=78 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=17.9
Q ss_pred HHHHHHHhcccCC-CCCHHHHHHHHHHHH
Q 030889 101 YFSLSMMDRHFHS-GMSVEEAVDLVDKCI 128 (169)
Q Consensus 101 ~~~~~~Le~~~~~-~~s~eea~~l~~~~l 128 (169)
..+..++-..|-. .+|.|||++++.+-|
T Consensus 60 d~aEA~iAyAWLeg~it~eEaveil~~nl 88 (120)
T PF11469_consen 60 DIAEALIAYAWLEGKITIEEAVEILKANL 88 (120)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHhcC
Confidence 3555555555543 589999999887665
No 113
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=20.39 E-value=2e+02 Score=21.88 Aligned_cols=48 Identities=25% Similarity=0.176 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 030889 76 GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 128 (169)
Q Consensus 76 gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l 128 (169)
.|.|-... ..+.-...+++|.=.....-+|.. .+++++||.+|+.+++
T Consensus 182 ~P~LeI~~--~dV~a~H~AtvG~idee~LFYL~S---RGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPELEIDE--DDVKASHGATVGQIDEEQLFYLMS---RGLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEEE-S--SSEEEEEEEEEEES-HHHHHHHHC---TT--HHHHHHHHHHHH
T ss_pred EEhHhccc--CCcEEEEeeEeecCCHHHHHHHHH---cCCCHHHHHHHHHhhC
Confidence 45554432 233345678888777777777766 7899999999998875
No 114
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.33 E-value=2.1e+02 Score=24.54 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEEeCCCCcEEEEEcCCCCeeee---CeeEeccchHHHHHH
Q 030889 68 LAGYDKETGPSLYYIDYIATLHKV---DKAAFGYGSYFSLSM 106 (169)
Q Consensus 68 laG~d~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~ 106 (169)
|+|.|. .+..+|..|.+..+ +.||.|.|+ +....
T Consensus 274 IGGQDs----K~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~m 310 (432)
T TIGR02259 274 IGGQDT----KGIQIDDHGIVENFQMNDRCAAGCGR-YLGYI 310 (432)
T ss_pred eCCCce----EEEEEcCCCcEeeeeecCcccccchH-HHHHH
Confidence 577773 58889999987754 688889887 43333
No 115
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=20.22 E-value=2.6e+02 Score=19.02 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 030889 14 EPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGE 52 (169)
Q Consensus 14 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 52 (169)
++.+--.+++.+|. |-.+++..|+++.+++.+...
T Consensus 39 Ltd~HW~vI~flR~----~y~~~~~~P~~R~l~K~~~~~ 73 (109)
T PF04358_consen 39 LTDEHWEVIRFLRD----YYQEYGVSPAIRMLIKALGED 73 (109)
T ss_dssp --HHHHHHHHHHHH----HHHHHSS---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHhhh
Confidence 33444456666654 445577888999999888775
No 116
>PHA02762 hypothetical protein; Provisional
Probab=20.06 E-value=1.9e+02 Score=17.10 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=16.8
Q ss_pred ceeeEEEEEEeCCCCcEEEEEcCC
Q 030889 62 YMVNILLAGYDKETGPSLYYIDYI 85 (169)
Q Consensus 62 ~~v~~llaG~d~~~gp~Ly~id~~ 85 (169)
-|-.++-.|+|+++...-.++.|.
T Consensus 25 eg~afvtigide~g~iayisiep~ 48 (62)
T PHA02762 25 EGEAFVTIGIDENDKISYISIEPL 48 (62)
T ss_pred cccEEEEEeECCCCcEEEEEeccc
Confidence 367788899996655555567664
Done!