Query 030889
Match_columns 169
No_of_seqs 124 out of 1041
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_a Proteasome subunit beta 100.0 5.3E-43 1.8E-47 267.9 17.0 162 1-163 36-198 (219)
2 1j2q_H Proteasome beta subunit 100.0 1.8E-42 6.2E-47 261.8 19.1 162 1-164 35-197 (202)
3 1ryp_K 20S proteasome; multica 100.0 2.2E-41 7.7E-46 255.0 20.5 159 1-159 36-196 (198)
4 1iru_L 20S proteasome; cell cy 100.0 1.6E-41 5.4E-46 257.0 19.1 161 1-163 35-195 (204)
5 1yar_H Proteasome beta subunit 100.0 1.7E-41 5.6E-46 259.3 18.4 161 1-164 43-204 (217)
6 1ryp_L 20S proteasome; multica 100.0 2.6E-41 8.9E-46 257.3 18.5 162 1-163 35-196 (212)
7 1ryp_A 20S proteasome; multica 100.0 1.5E-41 5E-46 263.6 17.0 162 1-163 64-235 (243)
8 1iru_H 20S proteasome; cell cy 100.0 1E-40 3.5E-45 252.7 20.2 162 1-164 35-198 (205)
9 3unf_H Proteasome subunit beta 100.0 1.2E-40 4.2E-45 257.1 20.5 161 1-164 35-195 (234)
10 3nzj_K Proteasome component PR 100.0 8.3E-41 2.8E-45 264.6 18.7 162 1-163 110-271 (287)
11 1iru_B 20S proteasome; cell cy 100.0 5.8E-41 2E-45 258.8 17.3 162 1-164 65-229 (233)
12 1yar_A Proteasome alpha subuni 100.0 1.1E-40 3.9E-45 257.1 18.8 161 1-163 68-232 (233)
13 1ryp_N 20S proteasome; multica 100.0 1.8E-40 6.3E-45 256.0 18.6 163 1-163 43-217 (233)
14 1iru_N 20S proteasome; cell cy 100.0 2.1E-40 7.2E-45 253.4 18.7 162 1-163 43-208 (219)
15 1iru_A 20S proteasome; cell cy 100.0 2.3E-40 7.9E-45 257.3 18.2 162 1-163 70-238 (246)
16 1iru_K 20S proteasome; cell cy 100.0 8.7E-40 3E-44 246.9 20.3 157 1-157 36-193 (201)
17 1ryp_C 20S proteasome; multica 100.0 4.1E-40 1.4E-44 255.6 18.3 164 1-164 66-238 (244)
18 1iru_C 20S proteasome; cell cy 100.0 2.7E-40 9.3E-45 259.0 16.9 163 1-163 66-236 (261)
19 1ryp_F 20S proteasome; multica 100.0 3.1E-40 1E-44 254.7 16.8 161 1-163 63-232 (233)
20 1iru_M 20S proteasome; cell cy 100.0 2E-39 6.7E-44 247.0 20.5 155 1-156 44-207 (213)
21 1ryp_I 20S proteasome; multica 100.0 3.3E-39 1.1E-43 247.3 20.5 159 1-162 35-194 (222)
22 1iru_F 20S proteasome; cell cy 100.0 5.4E-40 1.8E-44 257.5 16.4 163 1-164 64-233 (263)
23 3mi0_A Proteasome subunit alph 100.0 1.2E-39 4E-44 253.4 18.1 164 1-165 54-235 (248)
24 1iru_G 20S proteasome; cell cy 100.0 7E-40 2.4E-44 255.7 16.7 163 1-163 67-235 (254)
25 1ryp_M 20S proteasome; multica 100.0 3.7E-39 1.3E-43 247.0 20.3 155 1-156 44-216 (222)
26 1ryp_D 20S proteasome; multica 100.0 2.6E-39 8.9E-44 250.7 19.1 160 1-163 63-230 (241)
27 1g0u_M Proteasome component PR 100.0 2E-39 6.8E-44 254.7 18.5 163 1-163 76-250 (266)
28 1ryp_E 20S proteasome; multica 100.0 9.7E-40 3.3E-44 253.2 15.5 162 1-163 60-231 (242)
29 1iru_D 20S proteasome; cell cy 100.0 1.6E-39 5.4E-44 252.9 16.3 161 1-164 63-229 (248)
30 3h4p_A Proteasome subunit alph 100.0 2.1E-39 7.1E-44 254.2 16.8 162 1-165 72-238 (264)
31 1q5q_H Proteasome beta-type su 100.0 3.4E-39 1.2E-43 249.2 17.7 163 1-163 35-213 (235)
32 1ryp_G 20S proteasome; multica 100.0 1.1E-38 3.8E-43 247.6 20.1 161 1-162 64-233 (244)
33 1iru_E 20S proteasome; cell cy 100.0 1.9E-39 6.5E-44 251.4 15.5 162 1-164 68-238 (241)
34 3unf_N Proteasome subunit beta 100.0 9.8E-39 3.3E-43 240.8 18.9 159 1-163 35-196 (199)
35 1iru_I 20S proteasome; cell cy 100.0 1.5E-38 5.1E-43 245.5 19.5 159 1-162 35-193 (234)
36 1iru_J 20S proteasome; cell cy 100.0 1.9E-38 6.6E-43 240.2 19.5 154 1-155 43-198 (205)
37 1j2p_A Alpha-ring, proteasome 100.0 1.3E-38 4.4E-43 247.5 18.7 160 1-163 68-232 (246)
38 3nzj_H Proteasome component PU 100.0 2.9E-38 9.8E-43 247.2 20.5 160 1-163 64-224 (261)
39 1ryp_H 20S proteasome; multica 100.0 2.9E-38 1E-42 239.3 19.3 153 1-156 44-196 (205)
40 1ryp_B 20S proteasome; multica 100.0 1.7E-38 5.9E-43 247.3 18.1 163 1-164 65-247 (250)
41 1ryp_J 20S proteasome; multica 100.0 9.1E-38 3.1E-42 236.4 20.5 153 1-155 43-197 (204)
42 1q5q_A Proteasome alpha-type s 100.0 1.8E-38 6.2E-43 248.3 16.9 164 1-165 54-233 (259)
43 1q5r_H Proteasome beta-type su 100.0 3.9E-38 1.3E-42 250.0 17.8 163 1-163 100-278 (294)
44 3nzj_F Proteasome component C1 100.0 6.9E-38 2.4E-42 248.0 18.9 157 1-158 68-233 (288)
45 2jay_A Proteasome; hydrolase; 100.0 1.2E-37 4E-42 247.1 14.2 163 1-163 92-270 (291)
46 1m4y_A ATP-dependent protease 100.0 1.9E-28 6.6E-33 180.5 13.7 132 1-147 35-171 (171)
47 1g3k_A ATP-dependent protease 100.0 2.4E-28 8.3E-33 180.5 14.2 133 1-148 35-173 (174)
48 2z3b_A ATP-dependent protease 100.0 3.4E-28 1.2E-32 180.7 13.7 133 1-148 41-180 (180)
49 1vd2_A Protein kinase C, IOTA 48.4 6.1 0.00021 25.1 1.0 47 110-162 21-69 (89)
50 4eo3_A Bacterioferritin comigr 48.2 18 0.00061 28.1 3.9 74 76-149 102-193 (322)
51 3fpw_A HBPS, extracellular HAE 45.2 42 0.0014 24.3 5.2 37 112-152 62-98 (192)
52 1ojh_A NBLA; degradation prote 42.4 26 0.00087 20.8 3.0 23 113-135 23-45 (65)
53 2q8v_A NBLA protein; phycobili 42.2 26 0.00089 20.6 3.0 23 113-135 28-50 (63)
54 2a2l_A Unknown; structural gen 41.9 27 0.00094 23.9 3.7 35 113-151 10-44 (145)
55 3ub6_A Chemoreceptor TLPB; hom 40.3 55 0.0019 23.0 5.2 50 103-157 36-85 (181)
56 1apy_B Aspartylglucosaminidase 38.0 60 0.0021 22.2 4.9 56 92-152 48-107 (141)
57 1qzv_F Plant photosystem I: su 37.1 68 0.0023 21.7 4.8 24 56-81 50-73 (154)
58 3v5w_G G gamma-I, guanine nucl 34.7 79 0.0027 19.3 4.5 44 15-64 15-58 (77)
59 3fau_A NEDD4-binding protein 2 34.2 63 0.0021 19.4 4.1 39 114-152 7-45 (82)
60 2d9i_A NEDD4-binding protein 2 31.9 79 0.0027 19.6 4.4 40 113-152 14-53 (96)
61 3kol_A Oxidoreductase, glyoxal 29.3 58 0.002 21.0 3.7 21 74-94 131-151 (156)
62 1yx3_A Hypothetical protein DS 28.0 1.4E+02 0.0046 20.3 5.2 35 15-53 63-97 (132)
63 2kwp_A Transcription elongatio 26.2 1.5E+02 0.005 19.8 5.8 45 113-157 16-61 (129)
64 2kxe_A DNA polymerase II small 26.1 51 0.0017 19.6 2.4 25 101-125 20-45 (75)
65 2lrg_A Uncharacterized protein 23.8 85 0.0029 20.4 3.4 31 60-93 21-52 (126)
66 1b66_A 6-pyruvoyl tetrahydropt 23.5 66 0.0023 21.7 3.1 43 12-54 62-114 (140)
67 1eoq_A GAG polyprotein capsid 23.1 1.1E+02 0.0037 19.5 3.7 33 99-131 44-76 (96)
68 4g6x_A Glyoxalase/bleomycin re 22.5 1E+02 0.0035 20.2 4.0 29 63-91 120-148 (155)
69 3cs5_A Phycobilisome degradati 22.4 21 0.00071 20.8 0.2 23 113-135 26-48 (59)
70 1y9i_A Low temperature require 22.2 79 0.0027 22.6 3.3 24 106-129 34-57 (178)
71 4gdv_A L-asparaginase; NTN enz 22.1 2.1E+02 0.0073 22.1 6.0 53 93-151 218-274 (310)
72 3s4o_A Protein tyrosine phosph 22.0 81 0.0028 21.0 3.4 32 95-126 117-148 (167)
73 1rfz_A Hypothetical protein AP 21.4 85 0.0029 22.2 3.3 24 106-129 36-59 (168)
74 3or1_C Sulfite reductase GAMA; 21.3 74 0.0025 20.6 2.8 32 15-50 43-74 (105)
75 2vkc_A NEDD4-binding protein 2 21.1 1.5E+02 0.0052 19.7 4.5 40 113-152 59-98 (135)
76 1ztd_A Hypothetical protein PF 21.0 69 0.0024 21.1 2.5 27 102-128 72-99 (133)
77 1ixs_A Holliday junction DNA h 20.8 63 0.0021 18.7 2.1 30 95-124 26-57 (62)
78 1su0_B NIFU like protein ISCU; 20.7 2E+02 0.007 19.8 5.2 55 77-132 44-99 (159)
79 2gdt_A Leader protein; P65 hom 20.5 81 0.0028 20.5 2.8 20 114-133 21-40 (116)
80 3jtz_A Integrase; four strande 20.3 84 0.0029 19.4 2.8 47 81-132 29-76 (88)
No 1
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.3e-43 Score=267.95 Aligned_cols=162 Identities=22% Similarity=0.382 Sum_probs=155.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|. +|.|||+|++||||||+++||+||
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~-~~~~P~~v~~lvaG~D~~~gp~Ly 114 (219)
T 3h4p_a 36 YKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHS-SRMFPFLTQIIIGGYDLLEGAKLF 114 (219)
T ss_dssp EEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHH-TTTTTCCCCCEEEEEETTTEEEEE
T ss_pred EEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEEEEeCCCCcEEE
Confidence 5789999999999999999999999999999999999999999999999999874 466899999999999965899999
Q ss_pred EEcCCCCeeeeC-eeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecccc
Q 030889 81 YIDYIATLHKVD-KAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRE 159 (169)
Q Consensus 81 ~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 159 (169)
.+||+|++.+++ ++|+|+|+++++++||++|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|
T Consensus 115 ~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~e 194 (219)
T 3h4p_a 115 SLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEE 194 (219)
T ss_dssp EECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHH
T ss_pred EECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 030889 160 SVKD 163 (169)
Q Consensus 160 ~~~~ 163 (169)
|.++
T Consensus 195 i~~~ 198 (219)
T 3h4p_a 195 IEKI 198 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
No 2
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-42 Score=261.84 Aligned_cols=162 Identities=25% Similarity=0.357 Sum_probs=155.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|. +|.|||++++|+|||| ++||+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~-~r~rp~~~~~lvaG~D-~~gp~Ly 112 (202)
T 1j2q_H 35 YQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNS-YRYFPYLVQLLIGGID-SEGKSIY 112 (202)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH-TTTSCCCEEEEEEEEE-TTEEEEE
T ss_pred EEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh-hCCCCceEEEEEEEEe-CCCCEEE
Confidence 5789999999999999999999999999999999999999999999999999864 4568999999999999 5899999
Q ss_pred EEcCCCCeeeeC-eeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecccc
Q 030889 81 YIDYIATLHKVD-KAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRE 159 (169)
Q Consensus 81 ~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 159 (169)
.+||+|++.+++ ++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|
T Consensus 113 ~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~e 192 (202)
T 1j2q_H 113 SIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEE 192 (202)
T ss_dssp EECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHH
T ss_pred EECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred cccCC
Q 030889 160 SVKDT 164 (169)
Q Consensus 160 ~~~~~ 164 (169)
+.++.
T Consensus 193 i~~~~ 197 (202)
T 1j2q_H 193 VEQIL 197 (202)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 98764
No 3
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.2e-41 Score=255.03 Aligned_cols=159 Identities=40% Similarity=0.749 Sum_probs=150.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeC-CCCcE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDK-ETGPS 78 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~-~~gp~ 78 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.+++. +||++++|+||||+ +++|+
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~ 115 (198)
T 1ryp_K 36 RQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPE 115 (198)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEE
T ss_pred EEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcE
Confidence 57899999999999999999999999999999999999999999999999998765555 49999999999996 58999
Q ss_pred EEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccc
Q 030889 79 LYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWR 158 (169)
Q Consensus 79 Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 158 (169)
||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++++++-
T Consensus 116 Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 195 (198)
T 1ryp_K 116 LYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDF 195 (198)
T ss_dssp EEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCC
T ss_pred EEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred c
Q 030889 159 E 159 (169)
Q Consensus 159 ~ 159 (169)
|
T Consensus 196 ~ 196 (198)
T 1ryp_K 196 Q 196 (198)
T ss_dssp S
T ss_pred c
Confidence 4
No 4
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.6e-41 Score=257.03 Aligned_cols=161 Identities=20% Similarity=0.332 Sum_probs=153.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+| .+|.+||++++|+|||| ++||+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~-~~r~~~~~v~~lvaG~D-~~gp~Ly 112 (204)
T 1iru_L 35 IEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVY-QYKGMGLSMGTMICGWD-KRGPGLY 112 (204)
T ss_dssp EEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-TTTTSCCCBEEEEEEEC-SSSEEEE
T ss_pred EEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HhCCCCeeEEEEEEEEe-CCCCEEE
Confidence 578999999999999999999999999999999999999999999999999886 44557999999999999 5899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
.+||+|++.++++.|+|+|+++++++||++|+++||++||++++++||..+.+||..++++++|++|+++|+++++++|+
T Consensus 113 ~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei 192 (204)
T 1iru_L 113 YVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNV 192 (204)
T ss_dssp EEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEH
T ss_pred EECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred ccC
Q 030889 161 VKD 163 (169)
Q Consensus 161 ~~~ 163 (169)
.++
T Consensus 193 ~~~ 195 (204)
T 1iru_L 193 ADL 195 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.7e-41 Score=259.32 Aligned_cols=161 Identities=22% Similarity=0.383 Sum_probs=153.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++|+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|. +|.|||++++|+|||| +||+||
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~-~r~rp~~v~~lvaG~D--~gp~Ly 119 (217)
T 1yar_H 43 FQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQ-VKYMPYMVQLLVGGID--TAPHVF 119 (217)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH-TTTSCCCEEEEEEEES--SSEEEE
T ss_pred EEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh-cCCCCceEEEEEEEEC--CCCEEE
Confidence 5789999999999999999999999999999999999999999999999999864 4568999999999999 789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC-CCcEEecccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK-DGAREYAWRE 159 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~-~g~~~~~~~~ 159 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|++ +|+++++++|
T Consensus 120 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~e 199 (217)
T 1yar_H 120 SIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQ 199 (217)
T ss_dssp EECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHH
T ss_pred EECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHH
Confidence 999999999999999999999999999999999999999999999999999999998999999999999 8999999999
Q ss_pred cccCC
Q 030889 160 SVKDT 164 (169)
Q Consensus 160 ~~~~~ 164 (169)
+.++.
T Consensus 200 i~~~~ 204 (217)
T 1yar_H 200 IESRI 204 (217)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 6
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.6e-41 Score=257.28 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=154.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ ..||++++|+||||++++|+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~-~~p~~v~~lvaG~D~~~gp~Ly 113 (212)
T 1ryp_L 35 IEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEGPTIY 113 (212)
T ss_dssp EEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT-TSCCCBEEEEEEEETTTEEEEE
T ss_pred eeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhC-CCCceEEEEEEEEeCCCCCEEE
Confidence 578999999999999999999999999999999999999999999999999987443 3699999999999976799999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
.+||+|++.+++++|+|+|+++++++||++|+++||++||++++++||..+.+||..++++++|++|+++|+++++++|+
T Consensus 114 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei 193 (212)
T 1ryp_L 114 YVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDV 193 (212)
T ss_dssp EEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEH
T ss_pred EEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 030889 161 VKD 163 (169)
Q Consensus 161 ~~~ 163 (169)
.++
T Consensus 194 ~~~ 196 (212)
T 1ryp_L 194 GEL 196 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 7
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.5e-41 Score=263.63 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=153.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh-c--CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATAL-R--KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~-r--~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|+.+|++.+.++++.+++.|+++++++++++.+|+++++++|.++ | .|||+|++||||||+++||
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp 143 (243)
T 1ryp_A 64 FCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP 143 (243)
T ss_dssp EECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEE
T ss_pred EEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCc
Confidence 579999999999999999999999999999999999999999999999999996443 3 4999999999999965899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC-------CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS-------GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD 150 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~ 150 (169)
+||++||+|++.+++++|+|+|+++++++||+.|++ +||+|||++++++||..+.+|| .++++++|++|+++
T Consensus 144 ~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~ 222 (243)
T 1ryp_A 144 SIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD 222 (243)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT
T ss_pred EEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC
Confidence 999999999999999999999999999999999999 9999999999999999999999 79999999999999
Q ss_pred CcEEecccccccC
Q 030889 151 GAREYAWRESVKD 163 (169)
Q Consensus 151 g~~~~~~~~~~~~ 163 (169)
|+++++++|+.++
T Consensus 223 g~~~l~~~ei~~~ 235 (243)
T 1ryp_A 223 KFFTLSAENIEER 235 (243)
T ss_dssp EEEECCHHHHHHH
T ss_pred CeEECCHHHHHHH
Confidence 9999999998765
No 8
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1e-40 Score=252.72 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=153.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ .||++++|+||||+++||+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~--~p~~~~~lvaG~D~~~gp~ly 112 (205)
T 1iru_H 35 TPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR--EDLMAGIIIAGWDPQEGGQVY 112 (205)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT--TTCCEEEEEEEEETTTEEEEE
T ss_pred EEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC--cCccEEEEEEEEeCCCCCEEE
Confidence 578999999999999999999999999999999999999999999999999987433 399999999999965899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEeccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAWR 158 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~~ 158 (169)
.+||+|++.+++++++|+|+++++++||++|+++||+|||++++++||..+.+||..++++++|++|+++| +++++++
T Consensus 113 ~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ 192 (205)
T 1iru_H 113 SVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGD 192 (205)
T ss_dssp EECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGG
T ss_pred EECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 5689999
Q ss_pred ccccCC
Q 030889 159 ESVKDT 164 (169)
Q Consensus 159 ~~~~~~ 164 (169)
|+.++.
T Consensus 193 ei~~~~ 198 (205)
T 1iru_H 193 QIPKFA 198 (205)
T ss_dssp GSCCCC
T ss_pred HhhHHH
Confidence 998865
No 9
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.2e-40 Score=257.08 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=153.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|. ++ +||++++|||||| ++||+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~-~~-~p~~v~llvaG~D-~~gp~Ly 111 (234)
T 3unf_H 35 HFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFR-YQ-GHVGASLVVGGVD-LNGPQLY 111 (234)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH-TT-TCSCEEEEEEEEE-TTEEEEE
T ss_pred EEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHh-cC-CCccEEEEEEEEe-CCCCEEE
Confidence 5789999999999999999999999999999999999999999999999998863 33 7999999999999 5799999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++++++.++
T Consensus 112 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i 191 (234)
T 3unf_H 112 EVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALST 191 (234)
T ss_dssp EECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEEC
T ss_pred EECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 030889 161 VKDT 164 (169)
Q Consensus 161 ~~~~ 164 (169)
.+--
T Consensus 192 ~~~~ 195 (234)
T 3unf_H 192 PTEP 195 (234)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7653
No 10
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.3e-41 Score=264.61 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=155.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++|+|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++| .+|.+||++++||||||+++||+||
T Consensus 110 ~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~-~~r~~p~~v~~lvaG~D~~~gp~Ly 188 (287)
T 3nzj_K 110 IEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVY-QYKGAGLSMGTMICGYTRKEGPTIY 188 (287)
T ss_dssp EEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HTTTSCCCEEEEEEEEETTTEEEEE
T ss_pred EEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhcCCCceEEEEEEEEcCCCCCEEE
Confidence 579999999999999999999999999999999999999999999999999886 4455799999999999977899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
.+||+|++.++++.|+|+|+++++++||+.|+++||+|||++++++||..+.+||+.++++++|++|+++|+++++++|+
T Consensus 189 ~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev 268 (287)
T 3nzj_K 189 YVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDV 268 (287)
T ss_dssp EEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEH
T ss_pred EECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 030889 161 VKD 163 (169)
Q Consensus 161 ~~~ 163 (169)
.++
T Consensus 269 ~~~ 271 (287)
T 3nzj_K 269 GEL 271 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 11
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=5.8e-41 Score=258.76 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=154.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++|||||| ++||
T Consensus 65 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D-~~gp 143 (233)
T 1iru_B 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN-EGRP 143 (233)
T ss_dssp EESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC-SSSE
T ss_pred EEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe-CCCC
Confidence 5799999999999999999999999999999999999999999999999999975543 38999999999999 7899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
+||.+||+|++.+++++|+|+|+++++++||++|+++||+|||++++++||..+.+|| .++++++|++|+++|++++++
T Consensus 144 ~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~ 222 (233)
T 1iru_B 144 YLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTP 222 (233)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCH
T ss_pred eEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCH
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred cccccCC
Q 030889 158 RESVKDT 164 (169)
Q Consensus 158 ~~~~~~~ 164 (169)
+|+.++.
T Consensus 223 ~ei~~~~ 229 (233)
T 1iru_B 223 TEVKDYL 229 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 12
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.1e-40 Score=257.10 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=153.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|.+++ .|||++++|||||| ++||
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D-~~gp 146 (233)
T 1yar_A 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGID-QIGP 146 (233)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEEC-SSCE
T ss_pred EEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEe-CCCC
Confidence 5789999999999999999999999999999999999999999999999999975543 28999999999999 5899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEec
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYA 156 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~ 156 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.++|. ++++++|++|+++| +++++
T Consensus 147 ~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~ 225 (233)
T 1yar_A 147 RLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYD 225 (233)
T ss_dssp EEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECC
T ss_pred EEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999996 89999999999998 99999
Q ss_pred ccccccC
Q 030889 157 WRESVKD 163 (169)
Q Consensus 157 ~~~~~~~ 163 (169)
++|+.++
T Consensus 226 ~~ei~~~ 232 (233)
T 1yar_A 226 QEEVKKF 232 (233)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999876
No 13
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.8e-40 Score=255.98 Aligned_cols=163 Identities=14% Similarity=0.212 Sum_probs=154.8
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHHhc-CCCceeeEEEEEEeCC
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQF-----RNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKE 74 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~l~~~~r-~rP~~v~~llaG~d~~ 74 (169)
|+|++||+|+++|..+|++.|.++++.+++.|++ +++++++++.+|+++++.+|..+. .|||++++||||||++
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~ 122 (233)
T 1ryp_N 43 IPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122 (233)
T ss_dssp EEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCC
Confidence 5799999999999999999999999999999999 899999999999999999864332 4899999999999965
Q ss_pred CCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC
Q 030889 75 TGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS-----GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK 149 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-----~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~ 149 (169)
++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||+|||++++++||..+.+||..++++++|++|++
T Consensus 123 ~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~ 202 (233)
T 1ryp_N 123 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDK 202 (233)
T ss_dssp SCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEET
T ss_pred CCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEC
Confidence 699999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred C-CcEEecccccccC
Q 030889 150 D-GAREYAWRESVKD 163 (169)
Q Consensus 150 ~-g~~~~~~~~~~~~ 163 (169)
+ |+++++++|+.++
T Consensus 203 ~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 203 NTGLTFKKNLQVENM 217 (233)
T ss_dssp TTEEEEEEEEECCSC
T ss_pred CCCeEEcChHhcccc
Confidence 9 9999999999887
No 14
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.1e-40 Score=253.39 Aligned_cols=162 Identities=19% Similarity=0.301 Sum_probs=153.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHhc-CCCceeeEEEEEEeCCCCcE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQF-RNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~l~~~~r-~rP~~v~~llaG~d~~~gp~ 78 (169)
|+|++||+|+++|..+|++.|.++++.+++.|++ +++++++++.+++++++.+|.++. .|||++++|+||+| +++|+
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D-~~gp~ 121 (219)
T 1iru_N 43 MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA-DGESF 121 (219)
T ss_dssp EEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEE-TTEEE
T ss_pred EEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEE-CCCCE
Confidence 5799999999999999999999999999999998 999999999999999999864332 48999999999999 57999
Q ss_pred EEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEec
Q 030889 79 LYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS--GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYA 156 (169)
Q Consensus 79 Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 156 (169)
||.+||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++++++|++|+++|+++++
T Consensus 122 Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp EEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred EEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 030889 157 WRESVKD 163 (169)
Q Consensus 157 ~~~~~~~ 163 (169)
++|+.+.
T Consensus 202 ~~~i~~~ 208 (219)
T 1iru_N 202 PLSTETN 208 (219)
T ss_dssp EECCCCC
T ss_pred Ceeccch
Confidence 9998764
No 15
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.3e-40 Score=257.28 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=153.1
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh-c--CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATAL-R--KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~-r--~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+|+++++++|.++ + .|||+|++||||||+++||
T Consensus 70 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp 149 (246)
T 1iru_A 70 FKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP 149 (246)
T ss_dssp EESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEE
T ss_pred EEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCe
Confidence 579999999999999999999999999999999999999999999999999876444 3 4899999999999965899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS--GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AR 153 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~ 153 (169)
+||.+||+|++.+++++|+|+|+++++++||++|++ +||+|||++++++||..+.+|| .++++++|++|+++| ++
T Consensus 150 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~ 228 (246)
T 1iru_A 150 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFR 228 (246)
T ss_dssp EEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEE
T ss_pred EEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEE
Confidence 999999999999999999999999999999999999 9999999999999999999999 899999999999998 69
Q ss_pred EecccccccC
Q 030889 154 EYAWRESVKD 163 (169)
Q Consensus 154 ~~~~~~~~~~ 163 (169)
+++++|+.++
T Consensus 229 ~l~~~ei~~~ 238 (246)
T 1iru_A 229 ILTEAEIDAH 238 (246)
T ss_dssp ECCHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9999998765
No 16
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=8.7e-40 Score=246.94 Aligned_cols=157 Identities=48% Similarity=0.874 Sum_probs=147.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~L 79 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+.+..+. +||++++|+||||++++|+|
T Consensus 36 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~L 115 (201)
T 1iru_K 36 FKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPAL 115 (201)
T ss_dssp EECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEE
T ss_pred EEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEE
Confidence 57999999999999999999999999999999999999999999999999876444443 69999999999996589999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
|.+||+|++.++++.|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++++..
T Consensus 116 y~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 193 (201)
T 1iru_K 116 YYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN 193 (201)
T ss_dssp EEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred EEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765
No 17
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=4.1e-40 Score=255.57 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=153.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ .|||++++||||||+++||
T Consensus 66 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp 145 (244)
T 1ryp_C 66 YKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGY 145 (244)
T ss_dssp EESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEE
T ss_pred EEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999975542 3899999999999966899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc--CCC----
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD--KDG---- 151 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~--~~g---- 151 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+ ++|
T Consensus 146 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~ 225 (244)
T 1ryp_C 146 QLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVY 225 (244)
T ss_dssp EEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCE
T ss_pred EEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999955689999999999 886
Q ss_pred cEEecccccccCC
Q 030889 152 AREYAWRESVKDT 164 (169)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (169)
+++++++|+.++.
T Consensus 226 ~~~l~~~ei~~~~ 238 (244)
T 1ryp_C 226 QKIFKPQEIKDIL 238 (244)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEECCHHHHHHHH
Confidence 8999999998753
No 18
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.7e-40 Score=258.96 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=154.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++||||||+++||
T Consensus 66 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp 145 (261)
T 1iru_C 66 YKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF 145 (261)
T ss_dssp EECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEE
T ss_pred EEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCc
Confidence 5799999999999999999999999999999999999999999999999999975542 3899999999999966899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC----c
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS-GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG----A 152 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g----~ 152 (169)
+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||++++++||..+.++|..++++++|++|+++| +
T Consensus 146 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~ 225 (261)
T 1iru_C 146 QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVI 225 (261)
T ss_dssp EEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEE
T ss_pred EEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999987 7
Q ss_pred EEecccccccC
Q 030889 153 REYAWRESVKD 163 (169)
Q Consensus 153 ~~~~~~~~~~~ 163 (169)
++++++||.++
T Consensus 226 ~~l~~~ei~~~ 236 (261)
T 1iru_C 226 RVLKQKEVEQL 236 (261)
T ss_dssp EECCHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99999998765
No 19
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.1e-40 Score=254.73 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=152.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh---cCCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATAL---RKSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~---r~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.++ +.|||+|++|||||| ++||
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D-~~gp 141 (233)
T 1ryp_F 63 IKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYD-KSGA 141 (233)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE-TTEE
T ss_pred EEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEe-CCcC
Confidence 578999999999999999999999999999999999999999999999999997554 238999999999999 5899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC--CC--CHHHHHHHHHHHHHHHHhcc-cccCCCEEEEEEcCC-C
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS--GM--SVEEAVDLVDKCILEIRSRL-VVAPPNFVIKIVDKD-G 151 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~--s~eea~~l~~~~l~~~~~~d-~~~~~~i~i~~i~~~-g 151 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|++ +| |+|||++++++||..+. || ..++++++|++|+++ |
T Consensus 142 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~ 220 (233)
T 1ryp_F 142 HLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP 220 (233)
T ss_dssp EEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE
T ss_pred EEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC
Confidence 999999999999999999999999999999999998 99 99999999999999998 77 578999999999999 7
Q ss_pred cEEecccccccC
Q 030889 152 AREYAWRESVKD 163 (169)
Q Consensus 152 ~~~~~~~~~~~~ 163 (169)
+++++++|+.++
T Consensus 221 ~~~l~~~ei~~~ 232 (233)
T 1ryp_F 221 FTIYDGEAVAKY 232 (233)
T ss_dssp EEEEEGGGGGGG
T ss_pred EEECCHHHHHhh
Confidence 999999999876
No 20
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2e-39 Score=247.00 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=146.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|+++|+|+++|..+|++.|.++++.+++.|+++++++++++.+|+++++.+| ..|.|||++++|+||||++++|+||
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y-~~r~~P~~v~~lvaG~D~~g~p~Ly 122 (213)
T 1iru_M 44 YKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILY-SRRFFPYYVYNIIGGLDEEGKGAVY 122 (213)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HTTTSCCCEEEEEEEECTTSCEEEE
T ss_pred EEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-hhCCCCceEEEEEEEEcCCCCEEEE
Confidence 578999999999999999999999999999999999999999999999999985 4446899999999999966679999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcc---------cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRH---------FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---------~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
.+||+|++.+++++|+|+|+++++++||+. |+++||+|||++++++||..+.++|..++++++|++|+++|
T Consensus 123 ~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 202 (213)
T 1iru_M 123 SFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 202 (213)
T ss_dssp EECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE
T ss_pred EECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC
Confidence 999999999999999999999999999999 88999999999999999999999999999999999999999
Q ss_pred cEEec
Q 030889 152 AREYA 156 (169)
Q Consensus 152 ~~~~~ 156 (169)
+++..
T Consensus 203 ~~~~~ 207 (213)
T 1iru_M 203 IREET 207 (213)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87543
No 21
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.3e-39 Score=247.35 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=150.1
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+| .++ +||++++|+||+| ++||+||
T Consensus 35 ~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~-~~~-~p~~v~~lvaG~D-~~gp~Ly 111 (222)
T 1ryp_I 35 HRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLF-KYQ-GHIGAYLIVAGVD-PTGSHLF 111 (222)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-HTT-TCSCEEEEEEEEE-TTEEEEE
T ss_pred EEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hcC-CCCCeeEEEEEEe-CCCCEEE
Confidence 578999999999999999999999999999999999999999999999999886 333 7999999999999 5899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEecccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYAWRE 159 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~~~~ 159 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++| ++++.+.+
T Consensus 112 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 112 SIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp EECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred EECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999 99887666
Q ss_pred ccc
Q 030889 160 SVK 162 (169)
Q Consensus 160 ~~~ 162 (169)
+.+
T Consensus 192 ~~~ 194 (222)
T 1ryp_I 192 TPN 194 (222)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 22
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.4e-40 Score=257.52 Aligned_cols=163 Identities=21% Similarity=0.280 Sum_probs=154.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++|||||| ++||
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D-~~gp 142 (263)
T 1iru_F 64 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGP 142 (263)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE-TTEE
T ss_pred EEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc-CCCC
Confidence 5799999999999999999999999999999999999999999999999999975542 38999999999999 5899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHhcc-cccCCCEEEEEEcCC-CcE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS--GMSVEEAVDLVDKCILEIRSRL-VVAPPNFVIKIVDKD-GAR 153 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~~l~~~~l~~~~~~d-~~~~~~i~i~~i~~~-g~~ 153 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|++ +||+|||++++++||..+.+|| ..++++++|++|+++ |++
T Consensus 143 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~ 222 (263)
T 1iru_F 143 HIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFT 222 (263)
T ss_dssp EEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeE
Confidence 999999999999999999999999999999999998 9999999999999999999999 478999999999999 799
Q ss_pred EecccccccCC
Q 030889 154 EYAWRESVKDT 164 (169)
Q Consensus 154 ~~~~~~~~~~~ 164 (169)
+++++|+.++.
T Consensus 223 ~l~~~ei~~~~ 233 (263)
T 1iru_F 223 IYDDDDVSPFL 233 (263)
T ss_dssp EECSGGGHHHH
T ss_pred ECCHHHHHHHH
Confidence 99999997653
No 23
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.2e-39 Score=253.38 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=146.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH-HHHh-cCCCceeeEEEEEEeC---C
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNG-IPLTTAAAANFTRGEL-ATAL-RKSPYMVNILLAGYDK---E 74 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~l-~~~~-r~rP~~v~~llaG~d~---~ 74 (169)
|+|++||+|+++|+.+|++.|.+.++.+++.|++.++ ++++++.+++++++.+ |.++ +.|||+|++||||||+ +
T Consensus 54 ~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~ 133 (248)
T 3mi0_A 54 SELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGET 133 (248)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCC
T ss_pred EEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCC
Confidence 5799999999999999999999999999999999999 9999999999999544 3233 3599999999999995 3
Q ss_pred CCcEEEEEcCCCCeee-eCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-------hcccccCCCEEEEE
Q 030889 75 TGPSLYYIDYIATLHK-VDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR-------SRLVVAPPNFVIKI 146 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~-------~~d~~~~~~i~i~~ 146 (169)
+||+||++||+|++.+ ++++|+|+|++.++++||++|+++||+|||++++++||..+. +++ .++++++|++
T Consensus 134 ~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~v 212 (248)
T 3mi0_A 134 KRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAV 212 (248)
T ss_dssp CCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEE
T ss_pred CCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEE
Confidence 8999999999999995 999999999999999999999999999999999999999998 565 7899999999
Q ss_pred EcCCC----cEEecccccccCCC
Q 030889 147 VDKDG----AREYAWRESVKDTP 165 (169)
Q Consensus 147 i~~~g----~~~~~~~~~~~~~~ 165 (169)
|+++| +++++++||.++..
T Consensus 213 v~~~g~~~~f~~l~~~ei~~~l~ 235 (248)
T 3mi0_A 213 LDANRPRRAFRRITGSALQALLV 235 (248)
T ss_dssp EETTSSSCCEEECCHHHHHHTC-
T ss_pred EECCCCcccEEECCHHHHHHHHH
Confidence 99997 99999999988754
No 24
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7e-40 Score=255.70 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=153.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++||||||+++||
T Consensus 67 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp 146 (254)
T 1iru_G 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA 146 (254)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEE
T ss_pred EEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCc
Confidence 5789999999999999999999999999999999999999999999999999975543 3899999999999977899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC--C-cEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD--G-ARE 154 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~--g-~~~ 154 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++ | +++
T Consensus 147 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~ 226 (254)
T 1iru_G 147 QLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEI 226 (254)
T ss_dssp EEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEE
T ss_pred EEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999998888668889999999987 6 999
Q ss_pred ecccccccC
Q 030889 155 YAWRESVKD 163 (169)
Q Consensus 155 ~~~~~~~~~ 163 (169)
++++|+.++
T Consensus 227 l~~~~i~~~ 235 (254)
T 1iru_G 227 VPKDIREEA 235 (254)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999998765
No 25
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.7e-39 Score=247.05 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=146.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNG-IPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~L 79 (169)
|+|+++|+|+++|..+|++.|.++++.+++.|+++++ ++++++.+|+++++.+| ..|.+||++++||||||++++|+|
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly-~~r~~P~~v~~ivaG~D~~g~p~L 122 (222)
T 1ryp_M 44 FDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLY-GKRFFPYYVHTIIAGLDEDGKGAV 122 (222)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH-TTTTSCCCEEEEEEEECTTSCEEE
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-hcCCCCceEEEEEEEEcCCCCeEE
Confidence 5789999999999999999999999999999999999 99999999999999885 445689999999999996667999
Q ss_pred EEEcCCCCeeeeCeeEeccchHHHHHHHhcc-----------------cCCCCCHHHHHHHHHHHHHHHHhcccccCCCE
Q 030889 80 YYIDYIATLHKVDKAAFGYGSYFSLSMMDRH-----------------FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNF 142 (169)
Q Consensus 80 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~-----------------~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i 142 (169)
|.+||+|++.+++++|+|+|+++++++||+. |+++||+|||++++++||..+.+||+.+++++
T Consensus 123 y~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i 202 (222)
T 1ryp_M 123 YSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGL 202 (222)
T ss_dssp EEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEE
T ss_pred EEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcE
Confidence 9999999999999999999999999999998 88999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEec
Q 030889 143 VIKIVDKDGAREYA 156 (169)
Q Consensus 143 ~i~~i~~~g~~~~~ 156 (169)
+|++|+++|+++..
T Consensus 203 ~v~vi~~~g~~~~~ 216 (222)
T 1ryp_M 203 EILIVTKDGVRKEF 216 (222)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999987543
No 26
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.6e-39 Score=250.67 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=150.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC---CCceeeEEEEEEeCC-CC
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK---SPYMVNILLAGYDKE-TG 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~---rP~~v~~llaG~d~~-~g 76 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+|+++++++|.++|. |||+|++||||||++ ++
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~g 142 (241)
T 1ryp_D 63 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDE 142 (241)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCS
T ss_pred EEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999755443 899999999999954 89
Q ss_pred cEEEEEcCCCCeeeeCeeEeccchHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-c
Q 030889 77 PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHF---HSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-A 152 (169)
Q Consensus 77 p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~---~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~ 152 (169)
|+||.+||+|++.+++++|+|+|+++++++||+.| +++||+|||++++++||..+.+ .++++++|++|+++| +
T Consensus 143 p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~ 219 (241)
T 1ryp_D 143 PKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDI 219 (241)
T ss_dssp CEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEE
T ss_pred eeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcE
Confidence 99999999999999999999999999999999999 9999999999999999999985 689999999999985 9
Q ss_pred EEecccccccC
Q 030889 153 REYAWRESVKD 163 (169)
Q Consensus 153 ~~~~~~~~~~~ 163 (169)
++++++|+.++
T Consensus 220 ~~l~~~ei~~~ 230 (241)
T 1ryp_D 220 VALSSEEINQY 230 (241)
T ss_dssp EECCHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99999998765
No 27
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2e-39 Score=254.68 Aligned_cols=163 Identities=14% Similarity=0.212 Sum_probs=154.7
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHHhc-CCCceeeEEEEEEeCC
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQF-----RNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKE 74 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~l~~~~r-~rP~~v~~llaG~d~~ 74 (169)
|+|+++|+|+++|..+|++.|.+++|.+++.|++ +++++++++.+++++++.+|..+. .|||+|++||||||++
T Consensus 76 ~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~ 155 (266)
T 1g0u_M 76 IPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 155 (266)
T ss_dssp EECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT
T ss_pred EEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCC
Confidence 5799999999999999999999999999999998 899999999999999999864332 4899999999999965
Q ss_pred CCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC
Q 030889 75 TGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHS-----GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK 149 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-----~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~ 149 (169)
++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||+|||++++++||..+.+||..++++++|++|++
T Consensus 156 ~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k 235 (266)
T 1g0u_M 156 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDK 235 (266)
T ss_dssp SCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEET
T ss_pred CCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEC
Confidence 699999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred C-CcEEecccccccC
Q 030889 150 D-GAREYAWRESVKD 163 (169)
Q Consensus 150 ~-g~~~~~~~~~~~~ 163 (169)
+ |+++++++|+.++
T Consensus 236 ~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 236 NTGLTFKKNLQVENM 250 (266)
T ss_dssp TTEEEEEEEEECCCC
T ss_pred CCCeEEcCHHHhhhh
Confidence 9 9999999999887
No 28
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=9.7e-40 Score=253.17 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=152.2
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---------CCCceeeEEEEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---------KSPYMVNILLAGY 71 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---------~rP~~v~~llaG~ 71 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++|||||
T Consensus 60 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~ 139 (242)
T 1ryp_E 60 VEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139 (242)
T ss_dssp EEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEE
T ss_pred EEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEE
Confidence 5789999999999999999999999999999999999999999999999998864221 5799999999999
Q ss_pred eCCCCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 72 DKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 72 d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
|+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+| ..++++++|++|+++|
T Consensus 140 D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~ 218 (242)
T 1ryp_E 140 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD 218 (242)
T ss_dssp ETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT
T ss_pred eCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC
Confidence 977899999999999999999999999999999999999999999999999999999999999 5789999999999998
Q ss_pred -cEEecccccccC
Q 030889 152 -AREYAWRESVKD 163 (169)
Q Consensus 152 -~~~~~~~~~~~~ 163 (169)
+++++++|+.++
T Consensus 219 ~~~~~~~~ei~~~ 231 (242)
T 1ryp_E 219 GFKIYDNEKTAEL 231 (242)
T ss_dssp EEEECCHHHHHHH
T ss_pred CeEECCHHHHHHH
Confidence 799999998765
No 29
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.6e-39 Score=252.90 Aligned_cols=161 Identities=18% Similarity=0.252 Sum_probs=152.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.+++ .|||+|++||||||++++|
T Consensus 63 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp 142 (248)
T 1iru_D 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP 142 (248)
T ss_dssp EESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCE
T ss_pred EEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCc
Confidence 5799999999999999999999999999999999999999999999999999976554 2899999999999977899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCC--CHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEE
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGM--SVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-ARE 154 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~ 154 (169)
+||.+||+|++.+++++|+|+|+++++++||++|+++| |+|||++++++||..+.+ .++++++|++|+++| +++
T Consensus 143 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~ 219 (248)
T 1iru_D 143 RLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKI 219 (248)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEEC
T ss_pred EEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999 999999999999999986 479999999999998 999
Q ss_pred ecccccccCC
Q 030889 155 YAWRESVKDT 164 (169)
Q Consensus 155 ~~~~~~~~~~ 164 (169)
++++|+.++.
T Consensus 220 l~~~ei~~~~ 229 (248)
T 1iru_D 220 LNPEEIEKYV 229 (248)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 9999997764
No 30
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-39 Score=254.21 Aligned_cols=162 Identities=17% Similarity=0.283 Sum_probs=152.6
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.|+++++.+++.|+++++++++++.+|+++++++|.+++ .|||+|++|||||| ++||
T Consensus 72 ~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D-~~gp 150 (264)
T 3h4p_A 72 FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID-KNEA 150 (264)
T ss_dssp EEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE-TTEE
T ss_pred EEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe-CCcC
Confidence 5799999999999999999999999999999999999999999999999999875543 28999999999999 6899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC--CcEEe
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD--GAREY 155 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~--g~~~~ 155 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ .++++++|++|+++ +++++
T Consensus 151 ~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l 228 (264)
T 3h4p_A 151 RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKI 228 (264)
T ss_dssp EEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEEC
T ss_pred EEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEEC
Confidence 999999999999999999999999999999999999999999999999999999987 69999999999975 59999
Q ss_pred cccccccCCC
Q 030889 156 AWRESVKDTP 165 (169)
Q Consensus 156 ~~~~~~~~~~ 165 (169)
+++||.++..
T Consensus 229 ~~~ei~~~~~ 238 (264)
T 3h4p_A 229 PVEEIKKLIE 238 (264)
T ss_dssp CTTTTGGGTT
T ss_pred CHHHHHHHHH
Confidence 9999988753
No 31
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-39 Score=249.24 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=151.1
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--CCCceeeEEEEEEeCCCC--
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--KSPYMVNILLAGYDKETG-- 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--~rP~~v~~llaG~d~~~g-- 76 (169)
|+|+++++|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.++. .|||+|++||||||++++
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~ 114 (235)
T 1q5q_H 35 YVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDE 114 (235)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSST
T ss_pred EEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCcc
Confidence 5789999999999999999999999999999999999999999999999999874332 489999999999996557
Q ss_pred ---cEEEEEcCCCCeeee--CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCC--E-----EE
Q 030889 77 ---PSLYYIDYIATLHKV--DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPN--F-----VI 144 (169)
Q Consensus 77 ---p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~--i-----~i 144 (169)
|+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+|||++++++||..+.++|..+++. + +|
T Consensus 115 ~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev 194 (235)
T 1q5q_H 115 SRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTA 194 (235)
T ss_dssp TSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEE
T ss_pred CCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEE
Confidence 999999999999999 99999999999999999999999999999999999999999999877652 3 99
Q ss_pred EEEcCCCcEEecccccccC
Q 030889 145 KIVDKDGAREYAWRESVKD 163 (169)
Q Consensus 145 ~~i~~~g~~~~~~~~~~~~ 163 (169)
++|+++|+++++++|+.++
T Consensus 195 ~vi~~~g~~~l~~~ei~~~ 213 (235)
T 1q5q_H 195 VTITQAGAVHVSEETTSEL 213 (235)
T ss_dssp EEEETTEEEECCHHHHHHH
T ss_pred EEEeCCCeEEeCHHHHHHH
Confidence 9999999999999998764
No 32
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.1e-38 Score=247.58 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=151.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|.+++ .|||++++|||||| ++||
T Consensus 64 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D-~~gp 142 (244)
T 1ryp_G 64 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD-KNGA 142 (244)
T ss_dssp EEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE-TTEE
T ss_pred EEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe-CCcC
Confidence 5789999999999999999999999999999999999999999999999999975432 38999999999999 6899
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC---CC
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRH---FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK---DG 151 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~---~g 151 (169)
+||.+||+|++.+++++|+|+|+++++++||+. |+++||+|||++++++||..+.++|..++++++|++|++ +|
T Consensus 143 ~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g 222 (244)
T 1ryp_G 143 HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG 222 (244)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT
T ss_pred EEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC
Confidence 999999999999999999999999999999998 999999999999999999999999988999999999998 79
Q ss_pred cEEeccccccc
Q 030889 152 AREYAWRESVK 162 (169)
Q Consensus 152 ~~~~~~~~~~~ 162 (169)
++++.++|+.+
T Consensus 223 ~~~~~~~~~~~ 233 (244)
T 1ryp_G 223 LHKFVKGDLLQ 233 (244)
T ss_dssp SEEECCTHHHH
T ss_pred eeeeChHHHHH
Confidence 99988877643
No 33
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.9e-39 Score=251.44 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=152.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--------CCCceeeEEEEEEe
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--------KSPYMVNILLAGYD 72 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--------~rP~~v~~llaG~d 72 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ .|||++++||||||
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D 147 (241)
T 1iru_E 68 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD 147 (241)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE
T ss_pred EEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe
Confidence 5789999999999999999999999999999999999999999999999998853322 47999999999999
Q ss_pred CCCCcEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-
Q 030889 73 KETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG- 151 (169)
Q Consensus 73 ~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g- 151 (169)
++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+| ..++++++|++|+++|
T Consensus 148 -~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 148 -EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp -TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred -CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 5789999999999997
Q ss_pred cEEecccccccCC
Q 030889 152 AREYAWRESVKDT 164 (169)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (169)
+++++++|+.++.
T Consensus 226 ~~~l~~~ei~~~~ 238 (241)
T 1iru_E 226 FHMFTKEELEEVI 238 (241)
T ss_dssp CEECCHHHHHHHH
T ss_pred eEECCHHHHHHHH
Confidence 8999999998764
No 34
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=9.8e-39 Score=240.77 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=148.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|. ++ |||++++||||||++++|+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~-~~-~p~~v~~lvaG~D~~~~p~ly 112 (199)
T 3unf_N 35 SPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYK-YR-EDLLAHLIVAGWDQREGGQVY 112 (199)
T ss_dssp EEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-TT-TTCCCCEEEEEEETTTEEEEE
T ss_pred EEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cC-CCceEEEEEEEEeCCCCcEEE
Confidence 5799999999999999999999999999999999999999999999999999863 33 699999999999966899999
Q ss_pred EEcCCCCeeeeC-eeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEecc
Q 030889 81 YIDYIATLHKVD-KAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAW 157 (169)
Q Consensus 81 ~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~ 157 (169)
. |+|++.++. +.++|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++| ++.+++
T Consensus 113 ~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 113 G--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp E--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred E--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 9 999977665 55579999999999999999999999999999999999999999999999999999998 778999
Q ss_pred cccccC
Q 030889 158 RESVKD 163 (169)
Q Consensus 158 ~~~~~~ 163 (169)
+||++.
T Consensus 191 ~ei~~~ 196 (199)
T 3unf_N 191 DELPKF 196 (199)
T ss_dssp GGSCCC
T ss_pred ccCccc
Confidence 999875
No 35
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.5e-38 Score=245.51 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=149.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|. ++ +||++++|+|||| ++||+||
T Consensus 35 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~-~~-~~~~v~llvaG~D-~~gp~Ly 111 (234)
T 1iru_I 35 HFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFR-YR-GYIGAALVLGGVD-VTGPHLY 111 (234)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH-TT-TCSCEEEEEEEEC-SSCEEEE
T ss_pred EEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-cC-CCCceeEEEEEEc-CCCCEEE
Confidence 5789999999999999999999999999999999999999999999999998863 33 6999999999999 5899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEeccccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRES 160 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~ 160 (169)
.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++|..++++++|++|+++|++++.+.++
T Consensus 112 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~ 191 (234)
T 1iru_I 112 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTV 191 (234)
T ss_dssp EECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEEC
T ss_pred EECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceec
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999998876655
Q ss_pred cc
Q 030889 161 VK 162 (169)
Q Consensus 161 ~~ 162 (169)
.+
T Consensus 192 ~~ 193 (234)
T 1iru_I 192 PN 193 (234)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 36
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.9e-38 Score=240.23 Aligned_cols=154 Identities=17% Similarity=0.263 Sum_probs=144.0
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeC-CCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDK-ETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~-~~gp~L 79 (169)
|+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++.++ ..|..||++++|+||||+ +++|+|
T Consensus 43 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y-~~r~~P~~v~~lvaG~D~~~~~p~L 121 (205)
T 1iru_J 43 FPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLY-EKRFGPYYTEPVIAGLDPKTFKPFI 121 (205)
T ss_dssp EECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHH-TTTTSCCSCCCEEEEECTTSCCEEE
T ss_pred EEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-HhcCCCceEEEEEEEEeCCCCCeEE
Confidence 579999999999999999999999999999999999999999999999999884 344579999999999995 589999
Q ss_pred EEEcCCCCeeee-CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEe
Q 030889 80 YYIDYIATLHKV-DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREY 155 (169)
Q Consensus 80 y~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 155 (169)
|.+||+|++.++ .++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|+++.
T Consensus 122 y~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 198 (205)
T 1iru_J 122 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTR 198 (205)
T ss_dssp EEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEE
T ss_pred EEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEE
Confidence 999999999765 5699999999999999999999999999999999999999999998999999999999997753
No 37
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.3e-38 Score=247.47 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=151.1
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|.+++ .|||++++|||||| +||
T Consensus 68 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp 145 (246)
T 1j2p_A 68 YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVP 145 (246)
T ss_dssp EECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSE
T ss_pred EEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCC
Confidence 5799999999999999999999999999999999999999999999999999975543 28999999999999 799
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc-C-CCcEEe
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD-K-DGAREY 155 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~-~-~g~~~~ 155 (169)
+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.++ ..++++++|++|+ + +|++++
T Consensus 146 ~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l 224 (246)
T 1j2p_A 146 KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEV 224 (246)
T ss_dssp EEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEEC
T ss_pred EEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEEC
Confidence 999999999999999999999999999999999999999999999999999999998 6899999999999 6 489999
Q ss_pred cccccccC
Q 030889 156 AWRESVKD 163 (169)
Q Consensus 156 ~~~~~~~~ 163 (169)
+++|+.++
T Consensus 225 ~~~ei~~~ 232 (246)
T 1j2p_A 225 SPEELKPY 232 (246)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998764
No 38
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.9e-38 Score=247.22 Aligned_cols=160 Identities=17% Similarity=0.195 Sum_probs=149.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.++ .++ +||++++|||||| ++||+||
T Consensus 64 ~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~-~~~-~~~gv~llvaG~D-~~Gp~Ly 140 (261)
T 3nzj_H 64 HRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLF-KYQ-GHIGAYLIVAGVD-PTGSHLF 140 (261)
T ss_dssp EEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-HTT-TCSCEEEEEEEEE-TTEEEEE
T ss_pred EEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHH-Hhc-CcccEEEEEEEEe-CCCCEEE
Confidence 578999999999999999999999999999999999999999999999999875 333 7999999999999 5789999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEecccc
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYAWRE 159 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~~~~ 159 (169)
.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+||..++++++|++|+++| ++++.+-.
T Consensus 141 ~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~ 220 (261)
T 3nzj_H 141 SIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 220 (261)
T ss_dssp EECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred EECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 77777655
Q ss_pred cccC
Q 030889 160 SVKD 163 (169)
Q Consensus 160 ~~~~ 163 (169)
+.+-
T Consensus 221 ~~~~ 224 (261)
T 3nzj_H 221 TPNV 224 (261)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5543
No 39
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.9e-38 Score=239.28 Aligned_cols=153 Identities=22% Similarity=0.317 Sum_probs=144.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeCCCCcEEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLY 80 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~~~gp~Ly 80 (169)
|+|++|++|+++|..+|++.+.++++.+++.|++++++ ++++.+++++++.+|.+ |.+ |++++|+||||+++||+||
T Consensus 44 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~-~~~-~~~~~lvaG~D~~~gp~Ly 120 (205)
T 1ryp_H 44 TRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYEN-KDN-LTAGIIVAGYDDKNKGEVY 120 (205)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHT-TTT-CCEEEEEEEEETTTEEEEE
T ss_pred EEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh-hcC-ceEEEEEEEEecCCCcEEE
Confidence 57899999999999999999999999999999999999 99999999999998744 434 9999999999966899999
Q ss_pred EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEec
Q 030889 81 YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYA 156 (169)
Q Consensus 81 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 156 (169)
.+||+|++.++++.|+|+|+++++++||++|+++||+|||++++++||..+.+||..++++++|++|+++|+++..
T Consensus 121 ~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 121 TIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp EECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred EECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999989999999999999977544
No 40
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.7e-38 Score=247.27 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=151.4
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCC
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSL-YQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETG 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~g 76 (169)
|+|++||+|++||..+|++.+.++++.+++. |+..++.+++++.+++.++++++..++ .|||+|++||||||+++|
T Consensus 65 ~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~g 144 (250)
T 1ryp_B 65 SLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144 (250)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTE
T ss_pred EEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCC
Confidence 5789999999999999999999999999999 999999999999999999998875443 389999999999996579
Q ss_pred cEEEEEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCC------
Q 030889 77 PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKD------ 150 (169)
Q Consensus 77 p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~------ 150 (169)
|+||.+||+|++.+++++|+|+|+++++++||+.|+++||+|||++++++||..+.+++ .++++++|++|+++
T Consensus 145 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~ 223 (250)
T 1ryp_B 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLG 223 (250)
T ss_dssp EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTS
T ss_pred cEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999886 58999999999986
Q ss_pred ----------CcEEecccccccCC
Q 030889 151 ----------GAREYAWRESVKDT 164 (169)
Q Consensus 151 ----------g~~~~~~~~~~~~~ 164 (169)
++++++++||.++.
T Consensus 224 ~~~~~~~~~~~~~~l~~~ei~~~l 247 (250)
T 1ryp_B 224 YTGIPTDKGPRFRKLTSQEINDRL 247 (250)
T ss_dssp EESCSSCCCCSEEECCHHHHHHHH
T ss_pred ccccccCCCCCeEECCHHHHHHHH
Confidence 28999999998754
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=9.1e-38 Score=236.36 Aligned_cols=153 Identities=18% Similarity=0.298 Sum_probs=142.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCceeeEEEEEEeC-CCCcEE
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDK-ETGPSL 79 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v~~llaG~d~-~~gp~L 79 (169)
|+|+ |++|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++.++ ..|..||++++|+||||+ +++|+|
T Consensus 43 ~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y-~~~~~P~~v~~lvaG~D~~~~gp~L 120 (204)
T 1ryp_J 43 FHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLY-ERRFGPYFVGPVVAGINSKSGKPFI 120 (204)
T ss_dssp EEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-TTTTSCCCEEEEEEEECTTTCCEEE
T ss_pred EEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HhcCCCceEEEEEEEEeCCCCceEE
Confidence 5789 9999999999999999999999999999999999999999999999885 344469999999999995 589999
Q ss_pred EEEcCCCCeeee-CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEe
Q 030889 80 YYIDYIATLHKV-DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREY 155 (169)
Q Consensus 80 y~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~ 155 (169)
|.+||+|++.++ .++|+|+|+++++++||+.|+++||+|||++++++||..+.++|..++++++|++|+++|+++.
T Consensus 121 y~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 197 (204)
T 1ryp_J 121 AGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKR 197 (204)
T ss_dssp EEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEE
T ss_pred EEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEE
Confidence 999999999765 6799999999999999999999999999999999999999999998999999999999997753
No 42
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.8e-38 Score=248.32 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=148.9
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH-H-HHhcCCCceeeEEEEEEe--C-C
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNG-IPLTTAAAANFTRGEL-A-TALRKSPYMVNILLAGYD--K-E 74 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~l-~-~~~r~rP~~v~~llaG~d--~-~ 74 (169)
|+|++||+|+++|..+|++.|.++++.+++.|++.++ ++++++.+++++++.+ | +..+.|||+|++|||||| + +
T Consensus 54 ~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~ 133 (259)
T 1q5q_A 54 SELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSP 133 (259)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCC
T ss_pred EEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCC
Confidence 5799999999999999999999999999999999988 4999999999999953 2 223559999999999999 4 6
Q ss_pred CCcEEEEEcCCCCee-eeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-----hcccccCCCEEEEEEc
Q 030889 75 TGPSLYYIDYIATLH-KVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR-----SRLVVAPPNFVIKIVD 148 (169)
Q Consensus 75 ~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~-----~~d~~~~~~i~i~~i~ 148 (169)
+||+||.+||+|++. +++++|+|+|++.++++||++|+++||++||++++++||..+. +||. ++++++|++|+
T Consensus 134 ~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~ 212 (259)
T 1q5q_A 134 KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLD 212 (259)
T ss_dssp CCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEE
T ss_pred CCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEE
Confidence 899999999999999 7899999999999999999999999999999999999999998 8997 99999999999
Q ss_pred CC----CcEEecccccccCCC
Q 030889 149 KD----GAREYAWRESVKDTP 165 (169)
Q Consensus 149 ~~----g~~~~~~~~~~~~~~ 165 (169)
++ ++++++++|+.++..
T Consensus 213 ~~~~~~~~~~l~~~ei~~~~~ 233 (259)
T 1q5q_A 213 QSRPRRAFRRIAGTALEQLVP 233 (259)
T ss_dssp TTSSSCCEEECCHHHHHTTSC
T ss_pred CCCCcCCeEECCHHHHHHHHH
Confidence 98 799999999988754
No 43
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=3.9e-38 Score=250.05 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=151.5
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--CCCceeeEEEEEEeCCCC--
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--KSPYMVNILLAGYDKETG-- 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--~rP~~v~~llaG~d~~~g-- 76 (169)
|+|+++|+|+++|..+|++.|+++++.+++.|+++++++++++.++++|++++|.++. .|||+|++||||||++++
T Consensus 100 ~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~ 179 (294)
T 1q5r_H 100 YVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDE 179 (294)
T ss_dssp EEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCT
T ss_pred EEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcC
Confidence 5789999999999999999999999999999999999999999999999999975432 389999999999996557
Q ss_pred ---cEEEEEcCCCCeeee--CeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCC--E-----EE
Q 030889 77 ---PSLYYIDYIATLHKV--DKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPN--F-----VI 144 (169)
Q Consensus 77 ---p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~--i-----~i 144 (169)
|+||++||+|+++++ +++|+|+|+++++++||+.|+++||+|||++++++||..+.++|..+++. + +|
T Consensus 180 ~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev 259 (294)
T 1q5r_H 180 SRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTA 259 (294)
T ss_dssp TSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEE
T ss_pred CCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEE
Confidence 999999999999999 89999999999999999999999999999999999999999999877653 6 99
Q ss_pred EEEcCCCcEEecccccccC
Q 030889 145 KIVDKDGAREYAWRESVKD 163 (169)
Q Consensus 145 ~~i~~~g~~~~~~~~~~~~ 163 (169)
++|+++|+++++++|+.++
T Consensus 260 ~vI~~~g~~~l~~~ei~~~ 278 (294)
T 1q5r_H 260 VTITQAGAVHVSEETTSEL 278 (294)
T ss_dssp EEEETTEEEECCHHHHHHH
T ss_pred EEEECCCEEEcCHHHHHHH
Confidence 9999999999999998764
No 44
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=6.9e-38 Score=247.98 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=145.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc---CCCceeeEEEEEEeCCCCc
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR---KSPYMVNILLAGYDKETGP 77 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r---~rP~~v~~llaG~d~~~gp 77 (169)
|+|++||+|+++|+.+|++.|++++|.+++.|+++++++++++.+|+++++++|.+++ .|||+|++|||||| .+||
T Consensus 68 ~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D-~~Gp 146 (288)
T 3nzj_F 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD-KNGA 146 (288)
T ss_dssp EEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE-TTEE
T ss_pred EEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEe-CCCC
Confidence 5799999999999999999999999999999999999999999999999999975543 38999999999999 5889
Q ss_pred EEEEEcCCCCeeeeCeeEeccchHHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcC-C--C
Q 030889 78 SLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRH---FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDK-D--G 151 (169)
Q Consensus 78 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~-~--g 151 (169)
+||.+||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||..+.++|..++++++|++|++ + |
T Consensus 147 ~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~ 226 (288)
T 3nzj_F 147 HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG 226 (288)
T ss_dssp EEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTT
T ss_pred EEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCc
Confidence 999999999999999999999999999999999 999999999999999999999999988888999999999 3 5
Q ss_pred cEEeccc
Q 030889 152 AREYAWR 158 (169)
Q Consensus 152 ~~~~~~~ 158 (169)
.++.-++
T Consensus 227 ~~~~vp~ 233 (288)
T 3nzj_F 227 LHKFVKG 233 (288)
T ss_dssp CCEECCH
T ss_pred eEEECCH
Confidence 5444433
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.2e-37 Score=247.12 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=142.3
Q ss_pred CcccCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--CCCceeeEEEEEEeCCCC--
Q 030889 1 MVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR--KSPYMVNILLAGYDKETG-- 76 (169)
Q Consensus 1 ~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r--~rP~~v~~llaG~d~~~g-- 76 (169)
|+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.++. .|||+|++||||||++++
T Consensus 92 ~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~ 171 (291)
T 2jay_A 92 YITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDP 171 (291)
T ss_dssp EEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCS
T ss_pred EEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcC
Confidence 5789999999999999999999999999999999999999999999999999874332 279999999999996556
Q ss_pred ---cEEEEEcCCCCee--eeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCC--E-----EE
Q 030889 77 ---PSLYYIDYIATLH--KVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPN--F-----VI 144 (169)
Q Consensus 77 ---p~Ly~id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~--i-----~i 144 (169)
|+||++||+|+++ +++++|+|+|+++++++||+.|+++||+|||++++++||..+.++|..+++. + +|
T Consensus 172 ~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v 251 (291)
T 2jay_A 172 QSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTA 251 (291)
T ss_dssp TTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEE
T ss_pred CCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEE
Confidence 9999999999999 8999999999999999999999999999999999999999999999876653 2 69
Q ss_pred EEEcCCCcEEecccccccC
Q 030889 145 KIVDKDGAREYAWRESVKD 163 (169)
Q Consensus 145 ~~i~~~g~~~~~~~~~~~~ 163 (169)
++|+++|+++++++|+.++
T Consensus 252 ~vi~~dg~~~l~~~ei~~~ 270 (291)
T 2jay_A 252 VIIDADGAVDVPESRIAEL 270 (291)
T ss_dssp EEEETTEEEECCHHHHHHH
T ss_pred EEEECCCeEEcCHHHHHHH
Confidence 9999999999999998765
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.96 E-value=1.9e-28 Score=180.47 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=116.2
Q ss_pred Ccc-cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcE
Q 030889 1 MVL-DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~ 78 (169)
|+| ++|++|+++|..+|++.+.++++.+++.|+.+ .++.++++.+ .++ +.+. |||++++|++ | +|+
T Consensus 35 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~-~~~-~~~~~~~~~~~~lv~--D---~p~ 102 (171)
T 1m4y_A 35 RKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELAK-DWR-TDRVLRRLEALLLVA--D---KEN 102 (171)
T ss_dssp EEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHH-HHH-HCTTGGGCCCEEEEE--C---SSC
T ss_pred EEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHH-HHH-HhCCCCceEEEEEEE--c---CCE
Confidence 578 99999999999999999999999999988754 2666766654 443 3343 7899999888 5 899
Q ss_pred EEEEcCCCCeeeeC--eeEeccchHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEE
Q 030889 79 LYYIDYIATLHKVD--KAAFGYGSYFSLSMMDRHFH-SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIV 147 (169)
Q Consensus 79 Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i 147 (169)
||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||. ++++++||+.+.+||..++++++|.++
T Consensus 103 Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 103 IFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp EEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred EEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 99999999999987 99999999999999999999 99996 678999999999999999999999864
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.96 E-value=2.4e-28 Score=180.45 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=117.1
Q ss_pred Ccc-cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcE
Q 030889 1 MVL-DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~ 78 (169)
|+| ++|++|+++|..+|++.|.++++.+++.|+. +....+..+++.++ +.|. ||+ +.+++|+| +|+
T Consensus 35 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~-~~~~~r~~--~~~l~g~d---~p~ 102 (174)
T 1g3k_A 35 RRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWR-TDRALRKL--EAMLIVAD---EKE 102 (174)
T ss_dssp EEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHH-HSTTGGGC--CCEEEEEC---SSC
T ss_pred EEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHH-hccCcCcc--eEEEEEEC---CCE
Confidence 578 9999999999999999999999999999875 44556667777664 4444 675 56778887 799
Q ss_pred EEEEcCCCCeeeeC---eeEeccchHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc
Q 030889 79 LYYIDYIATLHKVD---KAAFGYGSYFSLSMMDRHFH-SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD 148 (169)
Q Consensus 79 Ly~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~ 148 (169)
||.+||+|++.+++ +.|+|+|+++++++||++|+ ++||.+ +++++||+.+.+||+.++++++|++|+
T Consensus 103 Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 103 SLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp EEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred EEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 99999999999988 99999999999999999999 999954 799999999999999999999999986
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.96 E-value=3.4e-28 Score=180.66 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=115.5
Q ss_pred Ccc-cCcEEEEEeCChhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcC-CCceeeEEEEEEeCCCCcE
Q 030889 1 MVL-DSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRK-SPYMVNILLAGYDKETGPS 78 (169)
Q Consensus 1 ~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~-rP~~v~~llaG~d~~~gp~ 78 (169)
|+| ++|++|+++|..+|++.|.++++.+++.|+ + +.++.++ .+++.++ +.+. |||++++|+| | +|+
T Consensus 41 ~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~-~~~~~rp~~~~~lva--d---~p~ 108 (180)
T 2z3b_A 41 RKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWR-SDKVLRKLEAMLIVM--N---QDT 108 (180)
T ss_dssp EEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHH-HCTTGGGCCCCEEEE--C---SSC
T ss_pred EEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHH-hhhCcCcceEEEEEE--c---CCe
Confidence 578 999999999999999999999999999987 3 3344444 3555553 3333 8999999999 4 699
Q ss_pred EEEEcCCCCeee--eCeeEeccchHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEc
Q 030889 79 LYYIDYIATLHK--VDKAAFGYGSYFSLSMMDRHFHS---GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVD 148 (169)
Q Consensus 79 Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~---~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~ 148 (169)
||.+||+|++.+ +++.|+|+|+++++++||+.|++ +||.|| ++++||+.+.+||+.++++++|.+|+
T Consensus 109 ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 109 LLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp EEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred EEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 999999999998 59999999999999999999998 999999 47899999999999999999999983
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.41 E-value=6.1 Score=25.09 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=35.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC--cEEeccccccc
Q 030889 110 HFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG--AREYAWRESVK 162 (169)
Q Consensus 110 ~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g--~~~~~~~~~~~ 162 (169)
...++++.++..+.+++.++. ..+..+.+.+++.+| +.+.+.+|+.+
T Consensus 21 ~v~~~i~~~~L~~kv~~~~~~------~~~~~f~lky~DEeGD~itisSd~EL~e 69 (89)
T 1vd2_A 21 HFEPSISFEGLCNEVRDMCSF------DNEQLFTMKWIDEEGDPCTVSSQLELEE 69 (89)
T ss_dssp EECTTCCHHHHHHHHHHHTTC------CSSCCEEEEECCSSSCCEECCSHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCC------CCCCeEEEEEECCCCCcccccCHHHHHH
Confidence 345688999999888886642 246789999999987 77777777643
No 50
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=48.18 E-value=18 Score=28.14 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCCeee-eCeeEeccchHHHHHHHhcccCCCCCHHHHHH----------------HHHHHHHHHHhc-ccc
Q 030889 76 GPSLYYIDYIATLHK-VDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVD----------------LVDKCILEIRSR-LVV 137 (169)
Q Consensus 76 gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~----------------l~~~~l~~~~~~-d~~ 137 (169)
-|..|.||+.|.+.. +.-+-.+.....+...|++.-..+|+..|+++ .+.++|..+..- ...
T Consensus 102 ~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~APS~~ 181 (322)
T 4eo3_A 102 VRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCM 181 (322)
T ss_dssp CCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTSCCGG
T ss_pred ccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHhCcCcC
Confidence 367899999998874 44455666777777877776544444444443 344445444331 113
Q ss_pred cCCCEEEEEEcC
Q 030889 138 APPNFVIKIVDK 149 (169)
Q Consensus 138 ~~~~i~i~~i~~ 149 (169)
+...+++.+|+.
T Consensus 182 N~Qpwrfivv~d 193 (322)
T 4eo3_A 182 NNQPWRFVVVDE 193 (322)
T ss_dssp GCCCCEEEEECC
T ss_pred CCcCeEEEEEeC
Confidence 444688888875
No 51
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=45.18 E-value=42 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 112 HSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 112 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
.+.+|+++|.+++..++..+.++ +..+-|.+++..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCC
Confidence 36799999999999999999865 45899999998873
No 52
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=42.43 E-value=26 Score=20.82 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRL 135 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d 135 (169)
.+||.|+|.++..+.++..+-+|
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998877655
No 53
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=42.21 E-value=26 Score=20.64 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRL 135 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d 135 (169)
.+||.|+|.++..+.++..+-+|
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999998887655
No 54
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=41.91 E-value=27 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
+.+|.++|.+++..+...+.++ +..+-|.+++..|
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G 44 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGG 44 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCC
Confidence 4589999999999999999764 5589999999887
No 55
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=40.31 E-value=55 Score=22.97 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCcEEecc
Q 030889 103 SLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAW 157 (169)
Q Consensus 103 ~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 157 (169)
+.+.++..+. .++.+||.+.+++.|...... .++--+.+++.+|....-+
T Consensus 36 a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g----~~~gY~fv~d~~g~~l~hP 85 (181)
T 3ub6_A 36 LEQGIHEYYK-SFDNDTARKMALDYFKRINDD----KGMIYMVVVDKNGVVLFDP 85 (181)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHT----CSSCEEEEECTTCBEEECT
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCccC----CCCCEEEEEeCCCCEEEeC
Confidence 3344444333 389999999999999888642 2224678888888665543
No 56
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=38.00 E-value=60 Score=22.24 Aligned_cols=56 Identities=16% Similarity=0.011 Sum_probs=34.9
Q ss_pred CeeEeccchHHHHHHHhc----ccCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 92 DKAAFGYGSYFSLSMMDR----HFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 92 ~~~a~G~g~~~~~~~Le~----~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
-+.++|.|...++..+-. ..+..++++||.+-+++-+.... ....--+..++++|-
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~-----~~~~ggvIa~d~~G~ 107 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHF-----PEFFGAVICANVTGS 107 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTSC
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CCCcEEEEEEeCCCC
Confidence 467899888766555443 23468999999887765443321 122345666777763
No 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=37.10 E-value=68 Score=21.73 Aligned_cols=24 Identities=0% Similarity=-0.112 Sum_probs=19.5
Q ss_pred HhcCCCceeeEEEEEEeCCCCcEEEE
Q 030889 56 ALRKSPYMVNILLAGYDKETGPSLYY 81 (169)
Q Consensus 56 ~~r~rP~~v~~llaG~d~~~gp~Ly~ 81 (169)
+.|+.-|+-+-|++|-| +-|||..
T Consensus 50 K~RFdkYgkSGLLCG~D--GLPHLIt 73 (154)
T 1qzv_F 50 XXXXXXXXXXXXXXXXX--XXXXXXX 73 (154)
T ss_pred hcccccccccccccccc--ccccccc
Confidence 34667899999999998 7888864
No 58
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=34.66 E-value=79 Score=19.32 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCcee
Q 030889 15 PGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMV 64 (169)
Q Consensus 15 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~~r~rP~~v 64 (169)
.+-.+.+++.+|.++.. .-+.+...+.-|-++...+.+..||-+
T Consensus 15 i~q~rk~VeQLr~Ea~i------~RikVSqaaadL~~yc~~~~~~DpLl~ 58 (77)
T 3v5w_G 15 IAQARKLVEQLKMEANI------DRIKVSKAAADLMAYCEAHAKEDPLLT 58 (77)
T ss_dssp HHHHHHHHHHHHHHHSS------CCCCHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred HHHHHHHHHHHHHHhcc------chhhHHHHHHHHHHHHHhcCCCCCCcC
Confidence 35566677777776643 346788888878777654434477744
No 59
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=34.20 E-value=63 Score=19.44 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 114 GMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 114 ~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
+|+.+||+..+.+.|..+..+-....+.-.+.+|+=.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 689999999999988877541001133446788886554
No 60
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=31.88 E-value=79 Score=19.61 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
-+|+.+||+..+.+.|..+...-....+.-.+.+|+=.|.
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 3689999999999999887531000133446888886554
No 61
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=29.35 E-value=58 Score=20.97 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCCcEEEEEcCCCCeeeeCee
Q 030889 74 ETGPSLYYIDYIATLHKVDKA 94 (169)
Q Consensus 74 ~~gp~Ly~id~~G~~~~~~~~ 94 (169)
..+-.+|..||.|..++....
T Consensus 131 ~~g~~~~~~DPdG~~iel~~~ 151 (156)
T 3kol_A 131 PTGRGVYFYDPDGFMIEIRCD 151 (156)
T ss_dssp -CCEEEEEECTTSCEEEEEEC
T ss_pred CCccEEEEECCCCCEEEEEec
Confidence 345689999999999886443
No 62
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=27.99 E-value=1.4e+02 Score=20.26 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 030889 15 PGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGEL 53 (169)
Q Consensus 15 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l 53 (169)
+.|--.+++.+| .|-.+|+..|+++.|++.+...+
T Consensus 63 Te~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 63 TEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 344455666665 44456788899999999885433
No 63
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=26.20 E-value=1.5e+02 Score=19.76 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC-cEEecc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG-AREYAW 157 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g-~~~~~~ 157 (169)
.+++.+..++.+..||..+..+..-...+++|.+=.+.| ++.+..
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~~~v~~~ 61 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCeEEEEEE
Confidence 579999999999999999988764455677776655556 554444
No 64
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=26.08 E-value=51 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHhcccCC-CCCHHHHHHHHH
Q 030889 101 YFSLSMMDRHFHS-GMSVEEAVDLVD 125 (169)
Q Consensus 101 ~~~~~~Le~~~~~-~~s~eea~~l~~ 125 (169)
..++-+|..+|++ ++|+-|.++.++
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAk 45 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAK 45 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHH
Confidence 3566778888888 899999998765
No 65
>2lrg_A Uncharacterized protein; unknown function; NMR {Bacteroides vulgatus} PDB: 3u6g_A*
Probab=23.79 E-value=85 Score=20.41 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCceeeEEEEEEeCCCCcE-EEEEcCCCCeeeeCe
Q 030889 60 SPYMVNILLAGYDKETGPS-LYYIDYIATLHKVDK 93 (169)
Q Consensus 60 rP~~v~~llaG~d~~~gp~-Ly~id~~G~~~~~~~ 93 (169)
..|.+++++++.+ .+||. || |..|.+....+
T Consensus 21 d~Fe~~~~fGa~n-~~GpakLY--~e~GeYlGdSy 52 (126)
T 2lrg_A 21 DSFEVSVSIGGAD-KGGPAKLY--NDKGEYIGDSY 52 (126)
T ss_dssp GGEEEEEEEECEE-TTEECCEE--CTTSCEEESEE
T ss_pred cceEEEEEEeecc-CCCCceee--cCCCcEechhh
Confidence 6789999999999 67774 55 67777776544
No 66
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=23.46 E-value=66 Score=21.74 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=30.0
Q ss_pred eCChhHHHHHHHHHHHHH---HHHHHHh-------CCCCCHHHHHHHHHHHHH
Q 030889 12 SGEPGDRVQFTEFIQKNV---SLYQFRN-------GIPLTTAAAANFTRGELA 54 (169)
Q Consensus 12 sG~~aD~~~l~~~~~~~~---~~~~~~~-------~~~~~~~~la~~l~~~l~ 54 (169)
.|+.-|+..+.+.++..+ ..|++-+ ...||.+.+|.+|.+.+.
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~ 114 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQ 114 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHH
Confidence 466678888888777622 1233323 347899999999999885
No 67
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=23.07 E-value=1.1e+02 Score=19.54 Aligned_cols=33 Identities=6% Similarity=-0.155 Sum_probs=27.3
Q ss_pred chHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 030889 99 GSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEI 131 (169)
Q Consensus 99 g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~ 131 (169)
+...++.+|+..+.+.-|++|.++-++.|....
T Consensus 44 ANPdCk~iLkal~g~~~tl~em~~yi~~~~d~g 76 (96)
T 1eoq_A 44 SQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTA 76 (96)
T ss_dssp SCHHHHHHHHHCCSCCCSHHHHHHHHHHHSCCC
T ss_pred cCHHHHHHHHccCCCCCCHHHHHHHHHHHHhhC
Confidence 345689999999999999999999999886443
No 68
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=22.47 E-value=1e+02 Score=20.19 Aligned_cols=29 Identities=14% Similarity=-0.044 Sum_probs=19.0
Q ss_pred eeeEEEEEEeCCCCcEEEEEcCCCCeeee
Q 030889 63 MVNILLAGYDKETGPSLYYIDYIATLHKV 91 (169)
Q Consensus 63 ~v~~llaG~d~~~gp~Ly~id~~G~~~~~ 91 (169)
|+.++-.-.+...|-..|..||.|+.++.
T Consensus 120 Gv~~~~~p~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 120 GVRFTQEPTDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp TCCEEEEEEECSSCEEEEEECSSSCEEEE
T ss_pred CcEEeeCCEEcCCeEEEEEECCCCCEEEE
Confidence 34444333454456678889999998874
No 69
>3cs5_A Phycobilisome degradation protein NBLA; photosynthesis, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning; 2.20A {Synechococcus SP}
Probab=22.35 E-value=21 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRL 135 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d 135 (169)
.+||.|+|.++..+.++..+-+|
T Consensus 26 ~~ls~EQaqe~Lve~~rQmmike 48 (59)
T 3cs5_A 26 RDISREDLEDLFIEVVRQKMAHE 48 (59)
T ss_dssp SSSCTGGGTHHHHTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998877655
No 70
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=22.24 E-value=79 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.473 Sum_probs=19.0
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHH
Q 030889 106 MMDRHFHSGMSVEEAVDLVDKCIL 129 (169)
Q Consensus 106 ~Le~~~~~~~s~eea~~l~~~~l~ 129 (169)
.|++.|.|+++.+++.+-+.+.|.
T Consensus 34 ~Lq~~y~p~l~~e~~~e~v~~vL~ 57 (178)
T 1y9i_A 34 FLQQKYHPGLELDICRQNVEHVLR 57 (178)
T ss_dssp HHHTTTSTTCCHHHHHHHHHHHHT
T ss_pred HhcCccCCCcCHHHHHHHHHHHhC
Confidence 567778999999999887666653
No 71
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=22.09 E-value=2.1e+02 Score=22.15 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=34.5
Q ss_pred eeEeccchHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCC
Q 030889 93 KAAFGYGSYFSLSMMDRH----FHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 151 (169)
Q Consensus 93 ~~a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g 151 (169)
..++|.|..+++..+-.. .+.+++++||.+.+++-+..-.. +..=+-.|+++|
T Consensus 218 vs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~~~~~~------g~gG~Iavd~~G 274 (310)
T 4gdv_A 218 VSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVK------GLGGLIVVSKTG 274 (310)
T ss_dssp EEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC------CCEEEEEEETTS
T ss_pred EEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcC------CcEEEEEEeCCC
Confidence 568999998888765542 34689999999877765544332 223344556555
No 72
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=22.02 E-value=81 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=18.1
Q ss_pred EeccchHHHHHHHhcccCCCCCHHHHHHHHHH
Q 030889 95 AFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDK 126 (169)
Q Consensus 95 a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 126 (169)
..|.+.....-.+--.+..+++.++|++.+++
T Consensus 117 ~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~ 148 (167)
T 3s4o_A 117 VAGLGRAPILVALALVEYGNVSALDAIALIRE 148 (167)
T ss_dssp SSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34544433332222223458999999888765
No 73
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=21.35 E-value=85 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=18.3
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHH
Q 030889 106 MMDRHFHSGMSVEEAVDLVDKCIL 129 (169)
Q Consensus 106 ~Le~~~~~~~s~eea~~l~~~~l~ 129 (169)
.|++.|.|+++.+++.+-+.+.|.
T Consensus 36 ~Lq~~y~p~l~~e~~~e~v~~vL~ 59 (168)
T 1rfz_A 36 YLQSKYHPDLTMEECIENVNRVIS 59 (168)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHHHT
T ss_pred HhcCccCCCcCHHHHHHHHHHHHC
Confidence 367778999999999886665553
No 74
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=21.29 E-value=74 Score=20.61 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 030889 15 PGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTR 50 (169)
Q Consensus 15 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~ 50 (169)
+.+=-.+++.+|. |-..|+..|+++.+++.+.
T Consensus 43 Te~HW~vI~flR~----yY~e~~~~P~iR~l~K~~~ 74 (105)
T 3or1_C 43 SADHQKIIDFLQD----YYKANGIAPMVRILSKNTG 74 (105)
T ss_dssp CHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHC
T ss_pred CHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHC
Confidence 3344456666664 4456788899999998875
No 75
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=21.07 E-value=1.5e+02 Score=19.67 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEcCCCc
Q 030889 113 SGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGA 152 (169)
Q Consensus 113 ~~~s~eea~~l~~~~l~~~~~~d~~~~~~i~i~~i~~~g~ 152 (169)
-+|+.+||+..+.+.|..+...-....+.-.|.||+-.|.
T Consensus 59 HGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~ 98 (135)
T 2vkc_A 59 HGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 98 (135)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc
Confidence 3689999999999998877431001123346888886553
No 76
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=21.04 E-value=69 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHHHHhcccCC-CCCHHHHHHHHHHHH
Q 030889 102 FSLSMMDRHFHS-GMSVEEAVDLVDKCI 128 (169)
Q Consensus 102 ~~~~~Le~~~~~-~~s~eea~~l~~~~l 128 (169)
.+..++-..|-. .+|.|||++++.+-|
T Consensus 72 ~aEA~iAyAWleG~is~eEaveilk~nl 99 (133)
T 1ztd_A 72 YAEALIAKAWLMGLISEREAVEIIKKNL 99 (133)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcC
Confidence 445555555543 589999999876544
No 77
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.79 E-value=63 Score=18.66 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=15.6
Q ss_pred EeccchHHHHHHHhccc--CCCCCHHHHHHHH
Q 030889 95 AFGYGSYFSLSMMDRHF--HSGMSVEEAVDLV 124 (169)
Q Consensus 95 a~G~g~~~~~~~Le~~~--~~~~s~eea~~l~ 124 (169)
+.|.....+...+++.. .++++.++.++.+
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~A 57 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEA 57 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 44666666666655543 2345555544443
No 78
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=20.72 E-value=2e+02 Score=19.76 Aligned_cols=55 Identities=25% Similarity=0.126 Sum_probs=39.5
Q ss_pred cEEE-EEcCCCCeeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 030889 77 PSLY-YIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 77 p~Ly-~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~ 132 (169)
-.|| .+| .|.+....|...|.+...+-+-+=..+-.+.|.+||.++...-.....
T Consensus 44 i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~ 99 (159)
T 1su0_B 44 ISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQ 99 (159)
T ss_dssp EEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 3455 456 477778888888877777766655556678999999999887554443
No 79
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=20.52 E-value=81 Score=20.52 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 030889 114 GMSVEEAVDLVDKCILEIRS 133 (169)
Q Consensus 114 ~~s~eea~~l~~~~l~~~~~ 133 (169)
+++.|||++.++..|+....
T Consensus 21 ~~~~EeALe~ar~~L~~g~~ 40 (116)
T 2gdt_A 21 GDSVEEALSEAREHLKNGTC 40 (116)
T ss_dssp CSSHHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHhhcCCc
Confidence 78999999999999987643
No 80
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.28 E-value=84 Score=19.39 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=29.8
Q ss_pred EEcCCCC-eeeeCeeEeccchHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 030889 81 YIDYIAT-LHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIR 132 (169)
Q Consensus 81 ~id~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~ 132 (169)
.+.|+|+ .+.+.+...|....... .--|++|++||.+.+.++...+.
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~L-----G~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIAL-----GAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEE-----EETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEe-----ECCCCCCHHHHHHHHHHHHHHHH
Confidence 5789986 34455554443211100 01278999999999999988775
Done!