Query 030891
Match_columns 169
No_of_seqs 39 out of 41
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kd8_A 2,3-bisphosphoglycerate 99.7 3.5E-17 1.2E-21 145.7 5.0 93 2-109 240-333 (399)
2 2zkt_A 2,3-bisphosphoglycerate 99.2 1.9E-11 6.3E-16 108.3 6.4 94 2-109 243-337 (412)
3 3igz_B Cofactor-independent ph 97.6 1.6E-05 5.3E-10 74.2 2.2 61 40-108 395-456 (561)
4 2i09_A Phosphopentomutase; str 97.6 3.1E-05 1.1E-09 69.5 3.4 87 12-109 231-331 (403)
5 3ot9_A Phosphopentomutase; alk 97.5 0.00011 3.6E-09 65.9 5.9 87 12-109 227-324 (399)
6 1o98_A 2,3-bisphosphoglycerate 96.7 0.0017 5.8E-08 59.6 5.6 99 2-108 325-434 (511)
7 1zed_A Alkaline phosphatase; p 96.2 0.0034 1.2E-07 57.3 4.3 60 40-108 285-347 (484)
8 3tg0_A Apase, alkaline phospha 93.8 0.025 8.5E-07 51.4 2.4 77 40-126 296-381 (449)
9 2w0y_A APH, alkaline phosphata 85.4 0.41 1.4E-05 43.8 2.6 56 40-106 270-332 (473)
10 3m7v_A Phosphopentomutase; str 77.7 0.52 1.8E-05 37.7 0.3 45 65-109 287-333 (413)
11 3q3q_A Alkaline phosphatase; h 76.2 1.1 3.6E-05 41.4 2.0 80 45-129 269-351 (565)
12 3szy_A Phosphonoacetate hydrol 73.8 2.6 8.9E-05 36.9 3.8 67 46-131 192-261 (427)
13 3aon_B V-type sodium ATPase su 73.4 5.3 0.00018 29.6 4.8 55 1-77 1-55 (115)
14 3a52_A Cold-active alkaline ph 71.6 1.8 6.2E-05 38.2 2.3 61 40-107 196-257 (400)
15 3nkq_A Ectonucleotide pyrophos 70.7 3.2 0.00011 39.7 3.9 82 41-128 244-328 (831)
16 2w5v_A Alkaline phosphatase; p 70.3 2.1 7E-05 36.1 2.2 57 45-108 233-290 (375)
17 2g2c_A Putative molybdenum cof 69.4 4.1 0.00014 31.0 3.6 55 1-73 4-76 (167)
18 3iwt_A 178AA long hypothetical 66.4 9.7 0.00033 28.8 5.1 57 3-76 16-91 (178)
19 1k7h_A Alkaline phosphatase; h 65.8 3.6 0.00012 37.4 3.0 61 40-108 284-346 (476)
20 4gtw_A Ectonucleotide pyrophos 63.6 4.7 0.00016 38.1 3.4 80 41-126 244-326 (823)
21 1y5e_A Molybdenum cofactor bio 63.4 11 0.00038 28.6 5.0 55 3-73 14-79 (169)
22 2d00_A V-type ATP synthase sub 62.4 14 0.00048 26.8 5.1 55 2-77 3-57 (109)
23 1ei6_A Phosphonoacetate hydrol 62.3 6.3 0.00022 33.0 3.7 67 45-130 178-247 (406)
24 3gl9_A Response regulator; bet 60.2 19 0.00064 24.0 5.2 54 1-78 1-58 (122)
25 2ov6_A V-type ATP synthase sub 58.1 15 0.0005 26.3 4.5 55 3-78 1-56 (101)
26 2gso_A Phosphodiesterase-nucle 55.7 4.5 0.00015 33.5 1.6 61 42-107 140-203 (393)
27 3o1l_A Formyltetrahydrofolate 54.3 17 0.00059 30.9 5.0 25 5-29 136-160 (302)
28 2gkg_A Response regulator homo 53.6 18 0.00061 23.4 4.1 53 1-77 4-60 (127)
29 1kgs_A DRRD, DNA binding respo 53.2 11 0.00039 27.6 3.4 54 1-78 1-58 (225)
30 3f6p_A Transcriptional regulat 50.3 40 0.0014 22.1 5.5 54 1-78 1-58 (120)
31 2qxy_A Response regulator; reg 49.7 52 0.0018 22.0 6.1 52 2-78 4-59 (142)
32 3lou_A Formyltetrahydrofolate 49.6 26 0.00088 29.5 5.4 26 5-30 126-151 (292)
33 3l8h_A Putative haloacid dehal 49.5 36 0.0012 24.2 5.5 58 2-59 43-119 (179)
34 3n0v_A Formyltetrahydrofolate 47.1 28 0.00095 29.2 5.2 26 5-30 121-146 (286)
35 1mvo_A PHOP response regulator 47.0 34 0.0012 22.6 4.7 54 1-78 2-59 (136)
36 1qwj_A Cytidine monophospho-N- 46.3 95 0.0032 23.6 8.2 74 6-103 48-121 (229)
37 2jba_A Phosphate regulon trans 45.5 39 0.0013 22.0 4.8 54 1-78 1-58 (127)
38 1zgz_A Torcad operon transcrip 44.6 22 0.00074 23.2 3.4 54 1-78 1-58 (122)
39 2lpm_A Two-component response 43.5 26 0.00088 25.4 3.9 44 13-79 23-66 (123)
40 3cg4_A Response regulator rece 42.0 62 0.0021 21.4 5.5 52 3-78 8-63 (142)
41 3i42_A Response regulator rece 41.4 67 0.0023 20.9 5.5 54 1-78 1-59 (127)
42 2zay_A Response regulator rece 39.6 45 0.0015 22.4 4.5 53 2-78 8-64 (147)
43 3kbq_A Protein TA0487; structu 39.2 17 0.00057 28.5 2.5 46 10-73 24-69 (172)
44 2qai_A V-type ATP synthase sub 39.1 28 0.00095 25.6 3.5 60 3-78 1-60 (111)
45 2is8_A Molybdopterin biosynthe 38.8 24 0.00083 26.6 3.3 48 10-73 22-69 (164)
46 2pbq_A Molybdenum cofactor bio 38.8 18 0.00061 27.8 2.5 47 10-73 26-75 (178)
47 3eod_A Protein HNR; response r 38.0 72 0.0025 20.8 5.3 53 2-78 7-63 (130)
48 3dci_A Arylesterase; SGNH_hydr 37.7 1.1E+02 0.0037 22.9 6.8 40 65-105 100-139 (232)
49 1tmy_A CHEY protein, TMY; chem 36.9 21 0.00072 23.1 2.4 55 1-78 1-59 (120)
50 3m6m_D Sensory/regulatory prot 36.9 56 0.0019 22.3 4.7 53 2-78 14-70 (143)
51 4ds3_A Phosphoribosylglycinami 36.0 40 0.0014 27.0 4.3 26 5-30 38-65 (209)
52 2oqr_A Sensory transduction pr 35.9 50 0.0017 24.3 4.6 54 1-78 3-60 (230)
53 3p94_A GDSL-like lipase; serin 35.8 49 0.0017 23.6 4.4 40 65-104 73-112 (204)
54 3obi_A Formyltetrahydrofolate 35.5 44 0.0015 28.0 4.6 25 5-29 120-145 (288)
55 2pjk_A 178AA long hypothetical 35.0 31 0.0011 26.6 3.4 46 12-73 43-88 (178)
56 3cnb_A DNA-binding response re 34.3 64 0.0022 21.3 4.5 52 3-78 9-66 (143)
57 3gt7_A Sensor protein; structu 33.9 96 0.0033 21.3 5.6 52 3-78 8-63 (154)
58 2gwr_A DNA-binding response re 33.5 61 0.0021 24.2 4.8 54 1-78 4-61 (238)
59 3nrb_A Formyltetrahydrofolate 33.5 40 0.0014 28.2 4.1 25 5-29 119-144 (287)
60 1s8n_A Putative antiterminator 33.5 64 0.0022 23.3 4.8 54 1-78 12-70 (205)
61 2vg0_A Short-chain Z-isoprenyl 33.1 43 0.0015 27.3 4.0 96 13-129 38-134 (227)
62 2hi0_A Putative phosphoglycola 32.7 48 0.0016 24.6 4.0 55 2-58 126-182 (240)
63 2rdm_A Response regulator rece 32.6 1E+02 0.0035 20.0 5.5 50 4-77 7-61 (132)
64 3hzh_A Chemotaxis response reg 31.7 43 0.0015 23.2 3.4 53 2-78 36-95 (157)
65 3pzy_A MOG; ssgcid, seattle st 31.4 31 0.001 26.3 2.8 46 10-73 28-73 (164)
66 1mkz_A Molybdenum cofactor bio 31.0 36 0.0012 25.9 3.1 55 3-73 11-76 (172)
67 2qr3_A Two-component system re 30.5 1E+02 0.0036 20.2 5.1 50 4-77 5-58 (140)
68 2rjn_A Response regulator rece 29.5 1.3E+02 0.0044 20.4 5.6 52 3-78 8-63 (154)
69 3cfy_A Putative LUXO repressor 28.6 86 0.0029 21.0 4.5 54 1-78 1-60 (137)
70 1srr_A SPO0F, sporulation resp 28.4 93 0.0032 20.1 4.5 54 1-78 2-59 (124)
71 1ezi_A CMP-N-acetylneuraminic 28.2 1.9E+02 0.0064 21.6 6.9 72 6-100 49-120 (228)
72 3tqr_A Phosphoribosylglycinami 27.9 1.3E+02 0.0044 24.1 6.0 25 5-29 35-61 (215)
73 3cu5_A Two component transcrip 26.8 1.4E+02 0.0047 20.1 5.3 55 1-78 1-61 (141)
74 3hdg_A Uncharacterized protein 26.6 85 0.0029 20.7 4.1 53 2-78 7-63 (137)
75 1jbe_A Chemotaxis protein CHEY 25.6 81 0.0028 20.5 3.8 24 47-78 38-61 (128)
76 4g3h_A Arginase (ROCF); rossma 25.4 57 0.0019 27.6 3.6 49 11-77 188-236 (330)
77 3r0j_A Possible two component 25.3 99 0.0034 23.3 4.7 52 3-78 24-79 (250)
78 4fcu_A 3-deoxy-manno-octuloson 25.3 2.6E+02 0.0087 22.2 8.1 72 6-105 46-119 (253)
79 3p9x_A Phosphoribosylglycinami 25.0 1.5E+02 0.0051 23.8 5.9 25 5-29 33-59 (211)
80 3kcq_A Phosphoribosylglycinami 24.9 87 0.003 25.1 4.5 25 5-29 39-65 (215)
81 2j48_A Two-component sensor ki 24.6 1.3E+02 0.0044 18.6 4.7 52 3-78 2-57 (119)
82 1k66_A Phytochrome response re 24.6 70 0.0024 21.1 3.3 14 65-78 61-74 (149)
83 3h5i_A Response regulator/sens 24.4 1.6E+02 0.0055 19.6 5.4 53 3-78 6-62 (140)
84 3lua_A Response regulator rece 24.4 1.2E+02 0.0041 20.1 4.5 51 3-77 5-61 (140)
85 1meo_A Phosophoribosylglycinam 24.3 90 0.0031 24.7 4.4 24 5-28 31-56 (209)
86 2pl1_A Transcriptional regulat 24.2 61 0.0021 20.8 2.9 51 4-78 2-56 (121)
87 3mmz_A Putative HAD family hyd 23.9 1.4E+02 0.0047 21.7 5.2 47 1-58 54-102 (176)
88 3nas_A Beta-PGM, beta-phosphog 23.7 46 0.0016 24.0 2.4 56 2-58 108-163 (233)
89 2ayx_A Sensor kinase protein R 23.7 1.8E+02 0.006 22.3 5.9 52 3-78 130-185 (254)
90 3kto_A Response regulator rece 23.4 79 0.0027 21.1 3.5 51 4-78 8-62 (136)
91 2b4a_A BH3024; flavodoxin-like 23.3 79 0.0027 21.0 3.4 52 3-78 16-72 (138)
92 3c97_A Signal transduction his 23.0 63 0.0021 21.6 2.9 54 1-78 9-66 (140)
93 3kcn_A Adenylate cyclase homol 22.7 1.8E+02 0.0062 19.6 5.4 14 65-78 47-60 (151)
94 1ys7_A Transcriptional regulat 22.6 1.4E+02 0.0048 21.7 4.9 52 3-78 8-63 (233)
95 3kbb_A Phosphorylated carbohyd 21.8 1.1E+02 0.0037 21.9 4.1 53 2-59 100-158 (216)
96 1p6q_A CHEY2; chemotaxis, sign 21.6 91 0.0031 20.2 3.4 23 48-78 41-63 (129)
97 3gi1_A LBP, laminin-binding pr 21.4 38 0.0013 27.8 1.7 45 6-53 14-58 (286)
98 3n0r_A Response regulator; sig 21.2 2.1E+02 0.0072 22.8 6.1 23 48-78 195-217 (286)
99 1qkk_A DCTD, C4-dicarboxylate 20.6 1.9E+02 0.0066 19.5 5.1 52 3-78 4-59 (155)
100 3cx3_A Lipoprotein; zinc-bindi 20.6 44 0.0015 27.2 1.9 45 6-53 12-56 (284)
101 3rqi_A Response regulator prot 20.3 1.7E+02 0.0059 20.8 5.0 52 3-78 8-63 (184)
102 3m1r_A Formimidoylglutamase; s 20.3 77 0.0026 26.5 3.4 77 11-103 197-278 (322)
103 3da8_A Probable 5'-phosphoribo 20.3 2.4E+02 0.0083 22.5 6.3 53 5-72 42-95 (215)
104 4g9b_A Beta-PGM, beta-phosphog 20.2 99 0.0034 23.3 3.8 57 2-59 111-167 (243)
No 1
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A
Probab=99.66 E-value=3.5e-17 Score=145.71 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030891 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|+|+|+|++.++++|+|+.+||+++.++++||..++ +|++|+.+++++| ++|||||+|++..|.++
T Consensus 240 gl~~~~Ia~~~l~~GLa~~aGm~~~~vpgatg~~dt----~~~~k~~~~i~~l----------~~~d~v~~n~~~~D~~G 305 (399)
T 3kd8_A 240 RMKGACVVGSPWLKGLCRLLRMDVFDVPGATGTVGS----NYRGKIEKAVDLT----------SSHDFVLVNIKATDVAG 305 (399)
T ss_dssp SSCEEEECCCHHHHHHHHHTTCEEECCCC------C----CHHHHHHHHHHHT----------TTCSEEEEEEECC----
T ss_pred CCcceEEecchHHHHHHHhCCCeeeeccCcCCCccc----cHHHHHHHHHHHH----------hhCCEEEEEecCcchhh
Confidence 789999999999999999999999999999999999 9999999999999 77999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030891 82 DDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
|.|+++.|+. ||.+|+.|++|++ .+++
T Consensus 306 H~gd~~~~~~aie~~D~~l~~i~~-l~~~ 333 (399)
T 3kd8_A 306 HDGNYPLKRDVIEDIDRAMEPLKS-IGDH 333 (399)
T ss_dssp --CCHHHHHHHHHHHHHTTGGGGS-CTTT
T ss_pred hccCHHHHHHHHHHHHHHHHHHHc-cCCC
Confidence 9999999999 9999999999998 6643
No 2
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase; phosphonopyruvate decarboxylase, isomerase, structural genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Probab=99.19 E-value=1.9e-11 Score=108.26 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=89.0
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030891 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
+.++++|+..++++|+|+.+||+++..+++++..++ +++.++.++++.| +.|||||+|+...|.++
T Consensus 243 ~~~~~~Va~~~l~~Gigk~~gmd~~~~~g~t~~~~~----~~~~~~~~~~~~l----------~~~d~v~v~~~~~D~~G 308 (412)
T 2zkt_A 243 KVKAAGVIAVALVKGVARAVGFDVYTPEGATGEYNT----NEMAKAKKAVELL----------KDYDFVFLHFKPTDAAG 308 (412)
T ss_dssp TCCEEEECCSHHHHHHHHHTTCEEECCTTCCSSTTC----CHHHHHHHHHHHH----------HHCSEEEEEECHHHHHH
T ss_pred CcCcceEeeccccchhhhhcccceeeccCccCCCCC----CHHHHHHHHHHHh----------cCCCEEEEcCccCChHH
Confidence 678999999999999999999999999999999998 9999999999999 57999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030891 82 DDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
|.|+.+.+.. ||++|+.|++++++.+..
T Consensus 309 H~~d~~~~~~aie~~D~~lg~ll~al~~~ 337 (412)
T 2zkt_A 309 HDNKPKLKAELIERADRMIGYILDHVDLE 337 (412)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999987763
No 3
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=97.64 E-value=1.6e-05 Score=74.15 Aligned_cols=61 Identities=7% Similarity=0.167 Sum_probs=54.9
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
.-++..++.++++.| +..+|||||+|+..+|.++|.|+.+.+.. ||++|+.||+|++..+.
T Consensus 395 emsa~ev~d~~i~al--------~~~~~DfI~vn~an~DmvGHtGd~~a~~kAIE~vD~~LGrIl~aL~e 456 (561)
T 3igz_B 395 RMQSAAITEAAIEAL--------KSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDS 456 (561)
T ss_dssp TTTHHHHHHHHHHHH--------HHSCCSEEEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--------HhCCCCEEEEecCChhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999 44679999999999999999999999999 99999999999998654
No 4
>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC, PSI, protein structure initiative; 2.00A {Streptococcus mutans} PDB: 3m7v_A
Probab=97.59 E-value=3.1e-05 Score=69.50 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=66.0
Q ss_pred chhhhhhhhhcceeeecC---------cccccC-CCCCCCChhHHHHHHHHHhccccCccccc-Ccc-cEEEEEeccCCC
Q 030891 12 SRLKSFGDKLGFATLQLN---------ELIETS-DSLSGSPIDVVASELLKLLGLQRGKMEEV-SQF-DLVLVHIGAGEK 79 (169)
Q Consensus 12 ~liksfg~~lGf~V~~~~---------~l~g~~-ds~~~~~~~~~a~~al~LLGf~egk~~~~-s~f-DlVFlHI~a~d~ 79 (169)
+.+--..+..|.+|+.+. |++... .+ .+.+..+.++++.| +. ..+ ||||+|+...|.
T Consensus 231 pTvld~L~~aG~~V~~VGKi~Dif~g~GiT~~~~~~---~~~~e~~d~~i~~l--------~~~~~~~dfi~vn~~~~Dm 299 (403)
T 2i09_A 231 PTVLNKLADAGVSTYAVGKINDIFNGSGITNDMGHN---KSNSHGVDTLIKTM--------GLSAFTKGFSFTNLVDFDA 299 (403)
T ss_dssp CCHHHHHHHTTCEEEEETTHHHHTTTTTCSEECCCC---SSHHHHHHHHHHHH--------HCSSCCSEEEEEEECHHHH
T ss_pred CCHHHHHHHCCCeEEEEcchHHeecCCCccccccCC---CCHHHHHHHHHHHH--------HhcCCCCCEEEEEeccCCc
Confidence 344444566677666553 343333 33 25577899999999 33 346 999999999996
Q ss_pred -cCcCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030891 80 -TNDDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 80 -a~hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
++|.|+.+.+.. ||++|+.||+|++..+++
T Consensus 300 ~~GH~~d~~~y~~aIe~vD~~LG~Il~aL~~~ 331 (403)
T 2i09_A 300 LYGHRRNAHGYRDCLHEFDERLPEIIAAMKVD 331 (403)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ccCcCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999 999999999999998864
No 5
>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate, PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A 3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A
Probab=97.53 E-value=0.00011 Score=65.89 Aligned_cols=87 Identities=7% Similarity=0.043 Sum_probs=67.7
Q ss_pred chhhhhhhhhcceeeecC---------cccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCC-cC
Q 030891 12 SRLKSFGDKLGFATLQLN---------ELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TN 81 (169)
Q Consensus 12 ~liksfg~~lGf~V~~~~---------~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~-a~ 81 (169)
+.+--..+..|.+|+.+. |++....+ .+....+.++++.| +...+||||+|+...|. ++
T Consensus 227 pTvld~L~~aG~~v~~VGKi~Dif~g~Git~~~~~---~~~~~~~d~~i~~L--------~~~~~dfv~vn~~~~D~~~G 295 (399)
T 3ot9_A 227 RTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRT---KSNMDGMDKLVDTL--------NMDFTGLSFLNLVDFDALFG 295 (399)
T ss_dssp CCHHHHHHHTTCEEEEETTHHHHTTTTTCSEEECC---SSHHHHHHHHHHHH--------TSCCSEEEEEEECHHHHHTT
T ss_pred CCHHHHHHHcCCeEEEeccHHheecCCCccceecc---CChHHHHHHHHHHH--------HhCCCCEEEEEecCCccccc
Confidence 445555567777777663 33322222 35678899999999 33468999999999999 99
Q ss_pred cCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030891 82 DDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
|.++...... +|++|+.||+|++..++.
T Consensus 296 H~~~~~~Y~~aIe~vD~~IGrIL~~L~e~ 324 (399)
T 3ot9_A 296 HRRDPQGYGEALQEYDARLPEVFAKLKED 324 (399)
T ss_dssp TTTCHHHHHHHHHHHHTTHHHHHHHCCTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999998 999999999999998863
No 6
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=96.72 E-value=0.0017 Score=59.59 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCceeEeecCchhhhhhh---------hhcceeeecC-cccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEE
Q 030891 2 GLKAALITTNSRLKSFGD---------KLGFATLQLN-ELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVL 71 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~---------~lGf~V~~~~-~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVF 71 (169)
|++.+.|+..+....+.- ..|++.+..+ ..++..|....-+.+..+.++++.| +..++||+|
T Consensus 325 Gy~~~~IaetekyahvtfF~nGg~~~~~~G~dr~l~~sp~v~tYDl~p~ms~~ev~d~ai~~L--------~~~kpdfi~ 396 (511)
T 1o98_A 325 GLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEI--------EADKYDAII 396 (511)
T ss_dssp TCCEEEEEEGGGHHHHTTTTTTSCCSCCTTEEEEEECCCSCSSGGGSTTTTHHHHHHHHHHHH--------HTTCCSEEE
T ss_pred CCcEEEEecccccCceeeecCCCcccccCCCcceecccCcccccccCccccHHHHHHHHHHHH--------HccCCcEEE
Confidence 566666765555554433 3455432222 1133333211234567889999998 235699999
Q ss_pred EEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030891 72 VHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 72 lHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
+|....|..+|.++.+.... +|++|+.||++++..+.
T Consensus 397 lnf~~pD~~GH~~~~~~y~~aIe~vD~~lGrll~~Lk~ 434 (511)
T 1o98_A 397 LNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILA 434 (511)
T ss_dssp EEECHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888 99999999999987653
No 7
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET: NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB: 1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Probab=96.23 E-value=0.0034 Score=57.28 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEec--cCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG--AGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~--a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
.|+...++++++++|. +.+|..||||+ ..|.++|+++...+.. ++.+|+.|+.+++..++
T Consensus 285 ~P~L~emt~~ai~~L~---------~~~~Gffl~veg~~iD~~gH~~d~~~~~~~~~~fD~al~~~~~~~~~ 347 (484)
T 1zed_A 285 DPSLMEMTEAALRLLS---------RNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSE 347 (484)
T ss_dssp CCCHHHHHHHHHHHHT---------TCTTCEEEEEEETTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHH---------hcCCcEEEEecccCcchhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999991 34899999999 7889999999999999 99999999999998765
No 8
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli} SCOP: c.76.1.1 PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B 1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A* 1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Probab=93.83 E-value=0.025 Score=51.40 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHhccccCcccccCc-cc--EEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcC--Cccc--
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQ-FD--LVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ--PATE-- 111 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~-fD--lVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~--~gs~-- 111 (169)
.|....+.+++|++| ++ ++ |+||+-+..|.++|+++...+.. ++.+|+.|+.+++..+ |-+.
T Consensus 296 ~PsL~eMT~kAi~~L----------~~~~~GfFl~VEg~~iD~a~H~nd~~~~~~e~~~fD~av~~a~~~~~~~~dTLii 365 (449)
T 3tg0_A 296 VPTLAQMTDKAIELL----------SKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVI 365 (449)
T ss_dssp SCCHHHHHHHHHHHH----------TTCSSCEEEEEEETHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred CCCHHHHHHHHHHHH----------hhCCCcEEEEEeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 468899999999999 43 44 67777788999999999999999 9999999999998765 3222
Q ss_pred -ccceeEEEEEEeecc
Q 030891 112 -VGSRLHLSVVLSYGQ 126 (169)
Q Consensus 112 -i~srlhlsvvlsYG~ 126 (169)
.|-+=|-..+++|+.
T Consensus 366 VTADH~~~~~~~g~~~ 381 (449)
T 3tg0_A 366 VTADHAHASQIVAPDT 381 (449)
T ss_dssp EECSSBCSCEEECTTC
T ss_pred EeCCCCCcccccCCCC
Confidence 233444455666764
No 9
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=85.39 E-value=0.41 Score=43.79 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcc---c---EEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhc
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQF---D---LVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMA 106 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~f---D---lVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a 106 (169)
.|......++||++| ++. + |+||+.+..|.++|+++...... ++.+|+. +.+++.+
T Consensus 270 ~PsL~eMt~kAi~~L----------~k~~~~~~GfFLmVEg~~iD~agH~nd~~~~~~e~~~fD~a-~~a~~~~ 332 (473)
T 2w0y_A 270 QPNLDAMVDAGVDLL----------SSAGDPDKGFFLLVESGRVDHAGHANYPAQVAEQYEATQVA-GQLVEYA 332 (473)
T ss_dssp CCCHHHHHHHHHHHH----------CCSSCSSCCEEEEEEECSHHHHHHHTCTTHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHH----------HhcCCCCCCeEEEeeccccChhhccCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 468889999999999 443 4 89999999999999999999999 9999999 9888865
No 10
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=77.66 E-value=0.52 Score=37.73 Aligned_cols=45 Identities=7% Similarity=-0.002 Sum_probs=37.7
Q ss_pred CcccEEEEEeccCC-CcCcCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030891 65 SQFDLVLVHIGAGE-KTNDDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 65 s~fDlVFlHI~a~d-~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
..+++++.+....+ ...|.++.+...+ ||++|..||+|++.-++.
T Consensus 287 ~~~~~~~~~~~~~d~~~~~~~~~~~y~~~i~~~D~~vg~~l~~L~en 333 (413)
T 3m7v_A 287 FTKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERLPEIIAAMKVD 333 (413)
T ss_dssp CCSEEEEEEECHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred cccccceecccccchhhhcchhHHHHHHHHHHHHhHHHHHHHhcCCC
Confidence 67789998887766 4578888888888 999999999999986653
No 11
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Probab=76.16 E-value=1.1 Score=41.39 Aligned_cols=80 Identities=6% Similarity=0.069 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcC-C--CcccccChHHHHHHHHHHHHhcCCcccccceeEEEEE
Q 030891 45 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDD-K--GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVV 121 (169)
Q Consensus 45 ~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hd-G--~~~~k~diE~iD~lVg~im~~a~~gs~i~srlhlsvv 121 (169)
.++..+.++|- +-+.-+....||+|+|....|..+|. | ..+....++++|+.|+.+++..+.-- .+.-+.|+
T Consensus 269 ~v~~~A~~~l~--~~~l~~~~~pdll~vy~~~~D~~gH~~Gp~S~e~~~~l~~lD~~lg~Ll~~l~~~~---~~t~vivt 343 (565)
T 3q3q_A 269 MTLAFAAAAIE--NMQLGKQAQTDIISIGLSATDYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDG---IDYVVVLT 343 (565)
T ss_dssp HHHHHHHHHHH--HTTTTSSSSCEEEEEEECHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHHHHHHH--hcccCCCCCCCEEEEEcCCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEEE
Confidence 34555555551 11111235789999999999999996 2 22223239999999999998754210 25556666
Q ss_pred Eeeccccc
Q 030891 122 LSYGQVLE 129 (169)
Q Consensus 122 lsYG~~~~ 129 (169)
=-+|-...
T Consensus 344 SDHG~~~~ 351 (565)
T 3q3q_A 344 ADHGGHDL 351 (565)
T ss_dssp CSCCCCCC
T ss_pred cCCCCCCC
Confidence 66666543
No 12
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=73.85 E-value=2.6 Score=36.95 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcC-CCcc-cccC-hHHHHHHHHHHHHhcCCcccccceeEEEEEE
Q 030891 46 VASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDD-KGKA-VAHD-LEYINALVRVILQMAQPATEVGSRLHLSVVL 122 (169)
Q Consensus 46 ~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hd-G~~~-~k~d-iE~iD~lVg~im~~a~~gs~i~srlhlsvvl 122 (169)
.+..+++++ +..++||+++| ..|.++|. |-.. .-.+ ++.+|++|+.+++. ...+.|+=
T Consensus 192 ~~~~a~~~~--------~~~~p~l~y~~--~~D~~gH~~G~~s~~~~~~~~~~D~~l~~l~~~---------~~~vivts 252 (427)
T 3szy_A 192 VFAAGVKLL--------REFRPDIMYLT--TTDYVQHKYAPGVPEANSFYEMFDRYLAELDGL---------GAAIVVTA 252 (427)
T ss_dssp HHHHHHHHH--------HHTCCSEEEEE--CCCHHHHHCCTTSHHHHHHHHHHHHHHHHHHHT---------TCEEEEEC
T ss_pred HHHHHHHHH--------HhcCCCEEEEc--ccchhhccCCCCcHHHHHHHHHHHHHHHHHHhC---------CCEEEEEc
Confidence 355666666 44678887765 78889986 5322 2233 99999999999986 24566666
Q ss_pred eeccccccC
Q 030891 123 SYGQVLEAD 131 (169)
Q Consensus 123 sYG~~~~~~ 131 (169)
-+|...-..
T Consensus 253 DHGm~~~~~ 261 (427)
T 3szy_A 253 DHGMKPKHK 261 (427)
T ss_dssp SCCCEECBC
T ss_pred CCCccccCc
Confidence 688776553
No 13
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=73.37 E-value=5.3 Score=29.60 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 1 MGmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
|-||-|+|.+...+.|| +.+|++++.+ + + ...+.++++-| + +. ++-.|+++=...
T Consensus 1 m~mKiaVIGD~Dtv~GF-rLaGie~~~v--------~----~-~ee~~~~~~~l------~-~~-digIIlIte~ia 55 (115)
T 3aon_B 1 MTYKIGVVGDKDSVSPF-RLFGFDVQHG--------T----T-KTEIRKTIDEM------A-KN-EYGVIYITEQCA 55 (115)
T ss_dssp CEEEEEEESCHHHHGGG-GGGTCEEECC--------C----S-HHHHHHHHHHH------H-HT-TEEEEEEEHHHH
T ss_pred CceEEEEEECHHHHHHH-HHcCCeEEEe--------C----C-HHHHHHHHHHH------H-hc-CceEEEEeHHHH
Confidence 78999999999999999 6899998654 1 2 23455566555 1 33 888999986543
No 14
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=71.61 E-value=1.8 Score=38.19 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcC
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ 107 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~ 107 (169)
.|......++||++|- ...+-| |+||--+.-|.++|..+...... +..+|+.|+.+++.++
T Consensus 196 ~PsL~emT~kAI~~L~------kn~~GF-FLmVEgg~ID~a~H~nd~~~al~e~~~fD~AV~~al~~~~ 257 (400)
T 3a52_A 196 ANTLSKLTQKSLDLLS------QNEKGF-VLLVEGSLIDWAGHNNDIATAMAEMQGFANAIEVVEQYIR 257 (400)
T ss_dssp SCHHHHHHHHHHHHHT------TCTTCE-EEEEEETHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH------hCCCCe-EEEecCccCchhhhhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777999999991 011111 89999999999999999999988 9999999999999877
No 15
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=70.74 E-value=3.2 Score=39.66 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcc-cc-cC-hHHHHHHHHHHHHhcCCcccccceeE
Q 030891 41 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKA-VA-HD-LEYINALVRVILQMAQPATEVGSRLH 117 (169)
Q Consensus 41 ~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~-~k-~d-iE~iD~lVg~im~~a~~gs~i~srlh 117 (169)
.+++..+.++++.|-.. +..+.+|+++|....|.++|.-... .. .+ |+++|..||.|++.-+. .-...+.-
T Consensus 244 ~~~~~~v~~~~~~l~~~-----~~~~P~f~~ly~~~~D~~gH~~Gp~s~ey~~al~~vD~~IG~Ll~~Lk~-~GL~dnT~ 317 (831)
T 3nkq_A 244 IPHERRILTILQWLSLP-----DNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQ-LKLHRCVN 317 (831)
T ss_dssp SCHHHHHHHHHHHHTSC-----TTTCCSEEEEEEEEEHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH-TTCTTTCE
T ss_pred CCHHHHHHHHHHHHhcc-----cccCCceEEEecCCcchhccccCCCcHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 46778888888888322 2357899999999999888863222 11 22 99999999999998543 22344555
Q ss_pred EEEEEeecccc
Q 030891 118 LSVVLSYGQVL 128 (169)
Q Consensus 118 lsvvlsYG~~~ 128 (169)
+.++=--|-+.
T Consensus 318 VI~TSDHGm~~ 328 (831)
T 3nkq_A 318 VIFVGDHGMED 328 (831)
T ss_dssp EEEEESCCCEE
T ss_pred EEEEcCCCCCC
Confidence 66665566543
No 16
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=70.35 E-value=2.1 Score=36.06 Aligned_cols=57 Identities=5% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030891 45 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 45 ~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
..+.++++.|. + ..+.-|+++.-...|..+|.++...... |+++|..||+|++..+.
T Consensus 233 ~~~~~ai~~i~--~-----~~kpFfl~~~~~~~d~~~h~~~~~~~~~~v~~~D~~vG~il~~L~~ 290 (375)
T 2w5v_A 233 AATDLAIQFLS--K-----DNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKK 290 (375)
T ss_dssp HHHHHHHHHHT--G-----GGCCEEEEEEETTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--h-----CCCceEEEeecCcCChhhcCccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888882 1 1222355555445566677776666455 99999999999997654
No 17
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=69.36 E-value=4.1 Score=31.04 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCCceeEee-------------cCchhhhh----hhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccc
Q 030891 1 MGLKAALIT-------------TNSRLKSF----GDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEE 63 (169)
Q Consensus 1 MGmKAA~Vt-------------~~~liksf----g~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~ 63 (169)
|.||+++|| |.+.|... .+.+|++|.... .++ + +.+...+.+-+++
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~-iv~---D----d~~~I~~~l~~a~--------- 66 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEV-VVP---E----GYDTVVEAIATAL--------- 66 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEE-EEC---S----SHHHHHHHHHHHH---------
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEE-EeC---C----CHHHHHHHHHHHH---------
Confidence 667888775 45667777 778899886542 222 2 4555555555666
Q ss_pred cC-cccEEEEE
Q 030891 64 VS-QFDLVLVH 73 (169)
Q Consensus 64 ~s-~fDlVFlH 73 (169)
+ ++|+|+.=
T Consensus 67 -~~~~DlVitt 76 (167)
T 2g2c_A 67 -KQGARFIITA 76 (167)
T ss_dssp -HTTCSEEEEE
T ss_pred -hCCCCEEEEC
Confidence 4 48999764
No 18
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=66.36 E-value=9.7 Score=28.78 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=36.5
Q ss_pred CceeEeecC------------------chhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHH-HhccccCcccc
Q 030891 3 LKAALITTN------------------SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLK-LLGLQRGKMEE 63 (169)
Q Consensus 3 mKAA~Vt~~------------------~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~-LLGf~egk~~~ 63 (169)
+|.|+||-. +.|...-+.+|++|.... .++ |......+++. ++ .
T Consensus 16 ~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~-iV~--------Dd~~~i~~al~~~~--------a 78 (178)
T 3iwt_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYS-LVP--------DDKIKILKAFTDAL--------S 78 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEE-EEC--------SCHHHHHHHHHHHH--------T
T ss_pred CEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEE-EeC--------CCHHHHHHHHHHHH--------h
Confidence 678888743 578888999999996542 222 33344444444 43 3
Q ss_pred cCcccEEEEEecc
Q 030891 64 VSQFDLVLVHIGA 76 (169)
Q Consensus 64 ~s~fDlVFlHI~a 76 (169)
.+++|+|+.==+.
T Consensus 79 ~~~~DlVittGG~ 91 (178)
T 3iwt_A 79 IDEVDVIISTGGT 91 (178)
T ss_dssp CTTCCEEEEESCC
T ss_pred cCCCCEEEecCCc
Confidence 3678999986443
No 19
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester, extended beta SHEE triad, metal triad; HET: NAG; 1.92A {Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Probab=65.82 E-value=3.6 Score=37.35 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHhccccCcccccCccc-EEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030891 40 GSPIDVVASELLKLLGLQRGKMEEVSQFD-LVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fD-lVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
.|....+.+++|++|- ..+-= |+||.-...|.++|..+...... ++.+|+.|+.+++..++
T Consensus 284 ~PsL~eMT~~ai~~L~--------~~~~GFfl~vE~~~iD~~gH~~d~~~~~~e~~~fD~av~~~~~~~~~ 346 (476)
T 1k7h_A 284 DPTLPEMTKVAIEMLT--------KDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDP 346 (476)
T ss_dssp SCCHHHHHHHHHHHHT--------TCTTCEEEEEEECHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHH--------hCCCceEEEecccccchhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788899999999992 11223 99999999999999999999999 99999999999999886
No 20
>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*
Probab=63.61 E-value=4.7 Score=38.07 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCc---ccccChHHHHHHHHHHHHhcCCcccccceeE
Q 030891 41 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGK---AVAHDLEYINALVRVILQMAQPATEVGSRLH 117 (169)
Q Consensus 41 ~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~---~~k~diE~iD~lVg~im~~a~~gs~i~srlh 117 (169)
.+++..+.++++.|... +....||+++|....|.+.|.-.. +....++++|+.||.+++.-+. .-...+..
T Consensus 244 ~~~~~~~~~~~~~l~~~-----~~~~P~fl~~y~~~pD~~gH~~Gp~s~e~~~~i~~vD~~IG~ll~~L~~-~gl~dnT~ 317 (823)
T 4gtw_A 244 VPFEERILAVLEWLQLP-----SHERPHFYTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKD-LGLDKCLN 317 (823)
T ss_dssp SCHHHHHHHHHHHTTSC-----TTTCCSEEEEEECTTHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHH-TTCTTSCE
T ss_pred CCHHHHHHHHHHHHHhc-----ccCCCeEEEECCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCeE
Confidence 36777888888888432 346789999999999888775211 1122289999999999887432 11334555
Q ss_pred EEEEEeecc
Q 030891 118 LSVVLSYGQ 126 (169)
Q Consensus 118 lsvvlsYG~ 126 (169)
+.++--.|-
T Consensus 318 VI~tSDHGm 326 (823)
T 4gtw_A 318 LILISDHGM 326 (823)
T ss_dssp EEEECSCCC
T ss_pred EEEEcCCCC
Confidence 555444443
No 21
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=63.42 E-value=11 Score=28.62 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=35.8
Q ss_pred CceeEee-----------cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEE
Q 030891 3 LKAALIT-----------TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVL 71 (169)
Q Consensus 3 mKAA~Vt-----------~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVF 71 (169)
+|+++|| |.+.|...-+.+|++|... ..++ + +.+...+.+-+++ +..++|+|+
T Consensus 14 ~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~-~iv~---D----d~~~i~~~l~~~~--------~~~~~DlVi 77 (169)
T 1y5e_A 14 VRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSY-EIVK---D----DKESIQQAVLAGY--------HKEDVDVVL 77 (169)
T ss_dssp CEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEE-EEEC---S----SHHHHHHHHHHHH--------TCTTCSEEE
T ss_pred CEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEE-EEeC---C----CHHHHHHHHHHHH--------hcCCCCEEE
Confidence 5677765 5577888888999998654 2222 2 5556666666666 112789997
Q ss_pred EE
Q 030891 72 VH 73 (169)
Q Consensus 72 lH 73 (169)
.=
T Consensus 78 tt 79 (169)
T 1y5e_A 78 TN 79 (169)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 22
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=62.37 E-value=14 Score=26.84 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=39.6
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
.||-|+|.+...+.|| +.+|++++.+. + ...+.++++-| .+.+++..|+++=...
T Consensus 3 ~mkiaVIgD~dtv~GF-rLaGi~~~~v~------------~-~ee~~~~~~~l-------~~~~digIIlIte~~a 57 (109)
T 2d00_A 3 PVRMAVIADPETAQGF-RLAGLEGYGAS------------S-AEEAQSLLETL-------VERGGYALVAVDEALL 57 (109)
T ss_dssp CCCEEEEECHHHHHHH-HHTTSEEEECS------------S-HHHHHHHHHHH-------HHHCCCSEEEEETTTC
T ss_pred ccEEEEEeCHHHHHHH-HHcCCeEEEeC------------C-HHHHHHHHHHH-------hhCCCeEEEEEeHHHH
Confidence 4899999999999999 68999997541 1 23445555554 2446899999986644
No 23
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas fluorescens} SCOP: c.76.1.4
Probab=62.27 E-value=6.3 Score=33.03 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcc--cccC-hHHHHHHHHHHHHhcCCcccccceeEEEEE
Q 030891 45 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKA--VAHD-LEYINALVRVILQMAQPATEVGSRLHLSVV 121 (169)
Q Consensus 45 ~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~--~k~d-iE~iD~lVg~im~~a~~gs~i~srlhlsvv 121 (169)
..+.++++++ +..+.|| +|+...|..+|.-... .-.+ ++++|+.||.+++. +.-+.++
T Consensus 178 ~~~~~a~~~i--------~~~~p~f--ly~~~~D~~gH~~g~~s~~~~~~l~~lD~~lg~ll~~---------~t~vivt 238 (406)
T 1ei6_A 178 FVFAAGLSLL--------TNERPDF--MYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQ---------GAIVAIT 238 (406)
T ss_dssp HHHHHHHHHH--------HTTCCSE--EEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT---------TCEEEEE
T ss_pred HHHHHHHHHH--------hcCCCeE--EEeCCcchhhccCCCCcHHHHHHHHHHHHHHHHHHhC---------CCEEEEE
Confidence 3556666666 2356777 5677888888763321 2233 99999999999987 4445555
Q ss_pred Eeecccccc
Q 030891 122 LSYGQVLEA 130 (169)
Q Consensus 122 lsYG~~~~~ 130 (169)
=-.|.+...
T Consensus 239 SDHG~~~~~ 247 (406)
T 1ei6_A 239 ADHGMNAKT 247 (406)
T ss_dssp CSCCCEECB
T ss_pred eCCCCccCC
Confidence 456765543
No 24
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=60.24 E-value=19 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=34.8
Q ss_pred CCCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|..|-.+|-+++. ++.+-+..|++|.... + ..++++.+ ...++|+||+-+..
T Consensus 1 m~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~-------~---------~~~al~~l--------~~~~~dlvllD~~~ 56 (122)
T 3gl9_A 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAE-------N---------GQIALEKL--------SEFTPDLIVLXIMM 56 (122)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEES-------S---------HHHHHHHH--------TTBCCSEEEECSCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeC-------C---------HHHHHHHH--------HhcCCCEEEEeccC
Confidence 5566667777664 3444456688885432 1 35677777 33679999998887
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
++
T Consensus 57 p~ 58 (122)
T 3gl9_A 57 PV 58 (122)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 25
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=58.05 E-value=15 Score=26.28 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=38.0
Q ss_pred CceeEeecCchhhhhhhhhcce-eeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~liksfg~~lGf~-V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
||-|+|.+...+.|| +.+|++ |+.+. +. ..+.++++-| .+.++|-.|+++=...+
T Consensus 1 MkiaVIGD~dtv~GF-rLaGi~~v~~v~------------~~-ee~~~~~~~l-------~~~~digIIlite~~a~ 56 (101)
T 2ov6_A 1 MELAVIGKSEFVTGF-RLAGISKVYETP------------DI-PATESAVRSV-------LEDKSVGILVMHNDDIG 56 (101)
T ss_dssp CCEEEEECHHHHHHH-HHHTCCEEEECC------------ST-TTHHHHHHHH-------HHHTSSSEEEEEHHHHT
T ss_pred CEEEEEECHHHHHHH-HHcCCCceEecC------------CH-HHHHHHHHHH-------hhCCCeEEEEEcHHHHH
Confidence 789999999999999 689999 76441 11 1233444444 13468999999976554
No 26
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=55.74 E-value=4.5 Score=33.53 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCc--ccccC-hHHHHHHHHHHHHhcC
Q 030891 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGK--AVAHD-LEYINALVRVILQMAQ 107 (169)
Q Consensus 42 ~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~--~~k~d-iE~iD~lVg~im~~a~ 107 (169)
..+..+.++++.|. + .+..+.+|+++|..+.+...|.-.. ..-.+ ++++|..||.|++..+
T Consensus 140 ~~~~~~~~a~~~l~--~---~~~~~P~fl~~~~~~~d~~~h~~g~~~~~y~~~i~~~D~~ig~ll~~L~ 203 (393)
T 2gso_A 140 RLDTRVDAVRGWLA--T---DGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQ 203 (393)
T ss_dssp CHHHHHHHHHHHHH--C---CGGGCEEEEEEEECHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--c---cCCCCCeEEEEecCCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888872 1 1235679999999988876653111 11123 9999999999998754
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=54.29 E-value=17 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.7
Q ss_pred eeEeecCchhhhhhhhhcceeeecC
Q 030891 5 AALITTNSRLKSFGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~ 29 (169)
+++|||++.++.+|+..|..+++++
T Consensus 136 ~~Visn~~~~~~~A~~~gIp~~~~~ 160 (302)
T 3o1l_A 136 ACVISNHQDLRSMVEWHDIPYYHVP 160 (302)
T ss_dssp EEEEESSSTTHHHHHTTTCCEEECC
T ss_pred EEEEECcHHHHHHHHHcCCCEEEcC
Confidence 5789999999999999999998875
No 28
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=53.60 E-value=18 Score=23.39 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCceeEeecCc----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNS----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.+|-.+|.+++ .++..-+..|+.|..... ..++++++ ...++|+|++-+..
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~~--------~~~~~dlvi~d~~~ 59 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTD----------------GKGSVEQI--------RRDRPDLVVLAVDL 59 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECC----------------HHHHHHHH--------HHHCCSEEEEESBC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecC----------------HHHHHHHH--------HhcCCCEEEEeCCC
Confidence 456777777776 344455557888743221 24556666 23569999998876
Q ss_pred C
Q 030891 77 G 77 (169)
Q Consensus 77 ~ 77 (169)
.
T Consensus 60 ~ 60 (127)
T 2gkg_A 60 S 60 (127)
T ss_dssp G
T ss_pred C
Confidence 5
No 29
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=53.17 E-value=11 Score=27.64 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=33.7
Q ss_pred CCCceeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.||-.+|.+++.+ +.+-...|+.|..... ..++++++ ...+||+|++-+..
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~~--------~~~~~dlvllD~~l 56 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYD----------------GEEGMYMA--------LNEPFDVVILDIML 56 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHSCCSEEEEESCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEECC----------------HHHHHHHH--------hcCCCCEEEEeCCC
Confidence 78898888888754 3344446887743221 24455555 23568999998877
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
++
T Consensus 57 ~~ 58 (225)
T 1kgs_A 57 PV 58 (225)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 30
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=50.29 E-value=40 Score=22.14 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=35.1
Q ss_pred CCCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|+.|-.+|-+++. ++.+-+..|++|.... + ..++++++ ...+||+||+-+..
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~al~~~--------~~~~~dlii~D~~~ 56 (120)
T 3f6p_A 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAH-------D---------GNEAVEMV--------EELQPDLILLDIML 56 (120)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEES-------S---------HHHHHHHH--------HTTCCSEEEEETTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCEEEEEeC-------C---------HHHHHHHH--------hhCCCCEEEEeCCC
Confidence 6667777777764 3334455688774321 1 34667776 34679999999887
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
++
T Consensus 57 p~ 58 (120)
T 3f6p_A 57 PN 58 (120)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 31
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=49.71 E-value=52 Score=21.95 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
.++-.+|.+++. ++..-+..|++|..... ..++++++ ...+||+||+.+ ..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlvi~d~-~~ 58 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKN----------------EQEAFTFL--------RREKIDLVFVDV-FE 58 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESS----------------HHHHHHHH--------TTSCCSEEEEEC-TT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECC----------------HHHHHHHH--------hccCCCEEEEeC-CC
Confidence 456677777654 34444557887753221 35677777 336799999998 65
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 59 ~ 59 (142)
T 2qxy_A 59 G 59 (142)
T ss_dssp T
T ss_pred C
Confidence 3
No 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=49.60 E-value=26 Score=29.52 Aligned_cols=26 Identities=4% Similarity=0.229 Sum_probs=22.9
Q ss_pred eeEeecCchhhhhhhhhcceeeecCc
Q 030891 5 AALITTNSRLKSFGDKLGFATLQLNE 30 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~~ 30 (169)
+++|||++.++.+|+..|..++.++-
T Consensus 126 ~~Visn~~~~~~~A~~~gIp~~~~~~ 151 (292)
T 3lou_A 126 VGIVSNHPDFAPLAAQHGLPFRHFPI 151 (292)
T ss_dssp EEEEESSSTTHHHHHHTTCCEEECCC
T ss_pred EEEEeCcHHHHHHHHHcCCCEEEeCC
Confidence 57899999999999999999987653
No 33
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=49.47 E-value=36 Score=24.19 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=34.2
Q ss_pred CCceeEeecCch-----------------hhhhhhhhc--ceeeecCcccccCCCCCCCChhHHHHHHHHHhccccC
Q 030891 2 GLKAALITTNSR-----------------LKSFGDKLG--FATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRG 59 (169)
Q Consensus 2 GmKAA~Vt~~~l-----------------iksfg~~lG--f~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~eg 59 (169)
|++-+++||.+. +..+.+.+| |+.+-..-..+..+....-+......++++.+|+...
T Consensus 43 g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 119 (179)
T 3l8h_A 43 DWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLA 119 (179)
T ss_dssp TCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCT
T ss_pred CCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHH
Confidence 788899999975 355666788 6654321111111111122445677889999986543
No 34
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=47.15 E-value=28 Score=29.18 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=22.8
Q ss_pred eeEeecCchhhhhhhhhcceeeecCc
Q 030891 5 AALITTNSRLKSFGDKLGFATLQLNE 30 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~~ 30 (169)
.++|||++.++.+|+..|..++.++-
T Consensus 121 ~~Visn~~~~~~~A~~~gIp~~~~~~ 146 (286)
T 3n0v_A 121 VAVVSNHPDLEPLAHWHKIPYYHFAL 146 (286)
T ss_dssp EEEEESSSTTHHHHHHTTCCEEECCC
T ss_pred EEEEeCcHHHHHHHHHcCCCEEEeCC
Confidence 57899999999999999999987653
No 35
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.01 E-value=34 Score=22.64 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|+.|-.+|.+++. ++.+-...|+.|..... ..++++++ ...++|+||+-+..
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~~--------~~~~~dlvl~D~~l 57 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASD----------------GEEALKKA--------ETEKPDLIVLDVML 57 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHHCCSEEEEESSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecC----------------HHHHHHHH--------hhcCCCEEEEecCC
Confidence 6677777877764 33444456787643221 24455555 23568999998887
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 58 ~~ 59 (136)
T 1mvo_A 58 PK 59 (136)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 36
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=46.30 E-value=95 Score=23.57 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=44.8
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCC
Q 030891 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 85 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~ 85 (169)
.++|+...+..+++..|..++.-++-..+... .-......+++.+ .+.|.|++|-+..
T Consensus 48 vv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~----~~~~~v~~al~~~----------~~~d~vlv~~~D~-------- 105 (229)
T 1qwj_A 48 WVSTDHDEIENVAKQFGAQVHRRSSETSKDSS----TSLDAIVEFLNYH----------NEVDIVGNIQATS-------- 105 (229)
T ss_dssp EEEESCHHHHHHHHHTTCEEEECCGGGSSTTC----CHHHHHHHHHTTC----------TTCSEEEEECTTC--------
T ss_pred EEECChHHHHHHHHHcCCEEEeChhhhcCCCC----cHHHHHHHHHHhc----------CCCCEEEEecCCC--------
Confidence 45677788888888889987654432111111 1123345666666 3468888886532
Q ss_pred cccccChHHHHHHHHHHH
Q 030891 86 KAVAHDLEYINALVRVIL 103 (169)
Q Consensus 86 ~~~k~diE~iD~lVg~im 103 (169)
.=++.+.|++++....
T Consensus 106 --Pli~~~~i~~l~~~~~ 121 (229)
T 1qwj_A 106 --PCLHPTDLQKVAEMIR 121 (229)
T ss_dssp --TTCCHHHHHHHHHHHH
T ss_pred --CcCCHHHHHHHHHHHH
Confidence 3345678888887654
No 37
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=45.48 E-value=39 Score=21.96 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=33.8
Q ss_pred CCCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.++-.+|-+++. ++.+-...|+.|.... + ..++++++ ...++|+|++-+..
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~-------~---------~~~a~~~~--------~~~~~dlvi~D~~l 56 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAE-------D---------YDSAVNQL--------NEPWPDLILLAWML 56 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEC-------S---------HHHHHTTC--------SSSCCSEEEEESEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHCCceEEEeC-------C---------HHHHHHHH--------hccCCCEEEEecCC
Confidence 6677777777763 4444455688774322 1 34566666 34579999998876
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 57 ~~ 58 (127)
T 2jba_A 57 PG 58 (127)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 38
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.64 E-value=22 Score=23.16 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.++-.+|-+++. ++..-...|+.|.... + ..++++++ ...++|+||+-+..
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~------------~----~~~~~~~~--------~~~~~dlvi~d~~l 56 (122)
T 1zgz_A 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTA------------S----GAGLREIM--------QNQSVDLILLDINL 56 (122)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEES------------S----HHHHHHHH--------HHSCCSEEEEESCC
T ss_pred CCcEEEEEECCHHHHHHHHHHHHHCCCeEEEec------------C----HHHHHHHH--------hcCCCCEEEEeCCC
Confidence 5667677777763 3444445677763221 1 23456666 23569999999887
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
++
T Consensus 57 ~~ 58 (122)
T 1zgz_A 57 PD 58 (122)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 39
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=43.51 E-value=26 Score=25.36 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=29.0
Q ss_pred hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCC
Q 030891 13 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 79 (169)
Q Consensus 13 liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~ 79 (169)
.++.+-+..|++|+. .-.+ ..+|++++ ...+||+||+-+.+++.
T Consensus 23 ~l~~~L~~~G~~v~~------~a~~---------g~eAl~~~--------~~~~~DlvllDi~mP~~ 66 (123)
T 2lpm_A 23 LIEDTLCELGHEVAA------TASR---------MQEALDIA--------RKGQFDIAIIDVNLDGE 66 (123)
T ss_dssp HHHHHHHHHCCCCCB------CSCC---------HHHHHHHH--------HHCCSSEEEECSSSSSC
T ss_pred HHHHHHHHCCCEEEE------EECC---------HHHHHHHH--------HhCCCCEEEEecCCCCC
Confidence 345556677888731 1111 35677777 44789999999999863
No 40
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.01 E-value=62 Score=21.45 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=31.8
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
++-.+|.+++. ++.+-+..|++|..... ..++++++ ...++|+|++.+...+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlii~d~~l~~ 63 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFHIISADS----------------GGQCIDLL--------KKGFSGVVLLDIMMPG 63 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HTCCCEEEEEESCCSS
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCC----------------HHHHHHHH--------HhcCCCEEEEeCCCCC
Confidence 45566666653 34444556887743221 34666766 3356999999988664
No 41
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.43 E-value=67 Score=20.91 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCC-ceeEeecCc----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030891 1 MGL-KAALITTNS----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 1 MGm-KAA~Vt~~~----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
|.+ |-.+|-+++ .++.+-+..|++|..+.. ..++++++ ...+||+||+-+.
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlii~D~~ 56 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMS----------------GTDALHAM--------STRGYDAVFIDLN 56 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESS----------------HHHHHHHH--------HHSCCSEEEEESB
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECC----------------HHHHHHHH--------HhcCCCEEEEeCC
Confidence 444 444454444 445555667887754321 34566666 3367999999988
Q ss_pred cCC
Q 030891 76 AGE 78 (169)
Q Consensus 76 a~d 78 (169)
..+
T Consensus 57 l~~ 59 (127)
T 3i42_A 57 LPD 59 (127)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 42
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.63 E-value=45 Score=22.43 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
.++-.+|.+++. ++..-+..|++|..... ..++++++ ...+||+||+-+...
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlii~d~~l~ 63 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGN----------------AIEAVPVA--------VKTHPHLIITEANMP 63 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESS----------------HHHHHHHH--------HHHCCSEEEEESCCS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCC----------------HHHHHHHH--------HcCCCCEEEEcCCCC
Confidence 456666766653 34444557888753321 24556666 234699999998866
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 64 ~ 64 (147)
T 2zay_A 64 K 64 (147)
T ss_dssp S
T ss_pred C
Confidence 4
No 43
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=39.21 E-value=17 Score=28.51 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=30.3
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030891 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
|.+.|....+.+|++|....= ++ + +.+...+.+-+++ .++|+||.-
T Consensus 24 N~~~l~~~L~~~G~~v~~~~i-v~---D----d~~~I~~~l~~a~----------~~~DlVitt 69 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFV-VM---D----DLDEIGWAFRVAL----------EVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE-EC---S----CHHHHHHHHHHHH----------HHCSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEE-eC---C----CHHHHHHHHHHHH----------hcCCEEEEc
Confidence 456778888999999865432 22 2 4555555555666 568999975
No 44
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=39.13 E-value=28 Score=25.62 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred CceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
||-|+|.+...+.|| +.+|++.+.+. ...+| ....+.++++-| .+.++|-.|+++=...+
T Consensus 1 MKIaVIGD~Dtv~GF-rLaGi~~~~v~---~~~~t-----~~ee~~~~~~~l-------~~~~digIIlIte~ia~ 60 (111)
T 2qai_A 1 MKIVVMGDSDTVVGF-RLAGVHEAYEY---DESLE-----SVERARNKLREL-------LERDDVGIILITERLAQ 60 (111)
T ss_dssp CEEEEEECHHHHHHH-HHHTCSEEEEC---CSSHH-----HHHHHHHHHHHH-------HTCTTEEEEEEEHHHHH
T ss_pred CEEEEEECHHHHHHH-HHcCCceEEEe---cCCCC-----CHHHHHHHHHHH-------hhCCCeEEEEEcHHHHh
Confidence 789999999999999 68899987431 11111 123456666655 24468999999854443
No 45
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=38.85 E-value=24 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=30.7
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030891 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
|.+.|...-+.+|++|.... .++ + +.+...+.+-+++ +..++|+|+.=
T Consensus 22 n~~~l~~~l~~~G~~v~~~~-iv~---D----d~~~i~~~l~~~~--------~~~~~DlVitt 69 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAYE-LVP---D----EPPMIKKVLRLWA--------DREGLDLILTN 69 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEEE-EEC---S----CHHHHHHHHHHHH--------HTSCCSEEEEE
T ss_pred hHHHHHHHHHHCCCeEeEEE-EcC---C----CHHHHHHHHHHHH--------hcCCCCEEEEc
Confidence 55678888899999886542 222 2 4555556555666 11168999764
No 46
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=38.77 E-value=18 Score=27.83 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=29.2
Q ss_pred cCchhhhhhh---hhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030891 10 TNSRLKSFGD---KLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 10 ~~~liksfg~---~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
|.+.|...-+ .+|++| .. ..++. +.+...+.+-+++ +..++|+|+.=
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-~iv~D-------d~~~I~~~l~~~~--------~~~~~DlVitt 75 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-RVIPD-------ERDLIEKTLIELA--------DEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-EEECS-------CHHHHHHHHHHHH--------HTSCCSEEEEE
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-EEcCC-------CHHHHHHHHHHHH--------hcCCCCEEEEC
Confidence 4456677666 899998 54 34442 5556666555666 11278999764
No 47
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=38.03 E-value=72 Score=20.83 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
++|-.+|.+++. ++.+-+..|+.|.... + ..++++++ ...+||+||+-+...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~a~~~l--------~~~~~dlvi~d~~l~ 62 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAA-------D---------GVDALELL--------GGFTPDLMICDIAMP 62 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEES-------C---------HHHHHHHH--------TTCCCSEEEECCC--
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC-------C---------HHHHHHHH--------hcCCCCEEEEecCCC
Confidence 456667776654 4445556688875421 1 34677777 346799999988765
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 63 ~ 63 (130)
T 3eod_A 63 R 63 (130)
T ss_dssp -
T ss_pred C
Confidence 4
No 48
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=37.68 E-value=1.1e+02 Score=22.89 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=25.0
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccChHHHHHHHHHHHHh
Q 030891 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQM 105 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg~im~~ 105 (169)
+++|+|||.++.-|.....+ .....=.+.+.++|..+...
T Consensus 100 ~p~d~VvI~~GtND~~~~~~-~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 100 MPLDLVIIMLGTNDIKPVHG-GRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp CSCSEEEEECCTTTTSGGGT-SSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEeccCCCccccC-CCHHHHHHHHHHHHHHHHHh
Confidence 56799999999777544321 01111166777777777665
No 49
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.93 E-value=21 Score=23.12 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCCceeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|+++-.+|-+++.+ +..-+..|++|+. ...+ ..++++++ ...++|+||+-+..
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~vv~------~~~~---------~~~a~~~~--------~~~~~dlil~D~~l 57 (120)
T 1tmy_A 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAG------EATN---------GREAVEKY--------KELKPDIVTMDITM 57 (120)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEE------EESS---------HHHHHHHH--------HHHCCSEEEEECSC
T ss_pred CCceEEEEcCcHHHHHHHHHHHhhcCcEEEE------EECC---------HHHHHHHH--------HhcCCCEEEEeCCC
Confidence 78888888877654 3334456777421 1111 34566666 23568999998876
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 58 ~~ 59 (120)
T 1tmy_A 58 PE 59 (120)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 50
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=36.92 E-value=56 Score=22.30 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
+||-.+|-+++. ++.+-...|+.|..+. + +.++++++ ...+||+||+-+...
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~al~~~--------~~~~~dlvl~D~~mp 69 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVN-------G---------AEQVLDAM--------AEEDYDAVIVDLHMP 69 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEES-------S---------HHHHHHHH--------HHSCCSEEEEESCCS
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeC-------C---------HHHHHHHH--------hcCCCCEEEEeCCCC
Confidence 356667766664 3444455677774321 1 24566666 336799999999877
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 70 ~ 70 (143)
T 3m6m_D 70 G 70 (143)
T ss_dssp S
T ss_pred C
Confidence 5
No 51
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=36.02 E-value=40 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.7
Q ss_pred eeEeecCchhhh--hhhhhcceeeecCc
Q 030891 5 AALITTNSRLKS--FGDKLGFATLQLNE 30 (169)
Q Consensus 5 AA~Vt~~~liks--fg~~lGf~V~~~~~ 30 (169)
.++|||.+...+ .|+..|..+++++-
T Consensus 38 ~~Visn~~~a~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 38 VAVFSDKAEAGGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp EEEEESCTTCTHHHHHHHTTCCEEECCG
T ss_pred EEEEECCcccHHHHHHHHcCCCEEEeCc
Confidence 468898877666 79999999988763
No 52
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=35.91 E-value=50 Score=24.26 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCCceeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|-++-.+|.+++.+ +.+-...|++|..... ..++++++ ...++|+||+-+..
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~al~~~--------~~~~~dlvllD~~l 58 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTD----------------GPAALAEF--------DRAGADIVLLDLML 58 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECS----------------HHHHHHHH--------HHHCCSEEEEESSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECC----------------HHHHHHHH--------hccCCCEEEEECCC
Confidence 55677788877743 3344456887743221 23455555 22468888888876
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 59 ~~ 60 (230)
T 2oqr_A 59 PG 60 (230)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 53
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=35.80 E-value=49 Score=23.57 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=24.4
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccChHHHHHHHHHHHH
Q 030891 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 104 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg~im~ 104 (169)
.+.|+|+++++.-|.....+......-.+.+.++|..+..
T Consensus 73 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (204)
T 3p94_A 73 LKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELAKA 112 (204)
T ss_dssp GCEEEEEEECCHHHHTTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 4579999999977755433222222226667777766554
No 54
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=35.47 E-value=44 Score=27.98 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.0
Q ss_pred eeEeecC-chhhhhhhhhcceeeecC
Q 030891 5 AALITTN-SRLKSFGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~-~liksfg~~lGf~V~~~~ 29 (169)
.++|+|+ +.++.+|+..|..++.++
T Consensus 120 ~~Visn~p~~~~~~A~~~gIp~~~~~ 145 (288)
T 3obi_A 120 TAIVSNHPRETFSGFDFGDIPFYHFP 145 (288)
T ss_dssp EEEEESSCGGGSCCTTTTTCCEEECC
T ss_pred EEEEcCCChhHHHHHHHcCCCEEEeC
Confidence 5789999 899999999999998865
No 55
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.02 E-value=31 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=28.6
Q ss_pred chhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030891 12 SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 12 ~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
+.|....+.+|++|.... .+. + +.+...+.+-+++ +...+|+|+.-
T Consensus 43 ~~L~~~l~~~G~~v~~~~-iv~---D----d~~~I~~al~~a~--------~~~~~DlVitt 88 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYS-LVP---D----DKIKILKAFTDAL--------SIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEE-EEC---S----CHHHHHHHHHHHH--------TCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEE-EeC---C----CHHHHHHHHHHHH--------hcCCCCEEEEC
Confidence 457788888999986532 222 2 4555555555677 11238999864
No 56
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.32 E-value=64 Score=21.26 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=30.8
Q ss_pred CceeEeecCch----hhhhhhh-hcce-eeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 3 LKAALITTNSR----LKSFGDK-LGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~-lGf~-V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
++-.+|.+++. ++..-+. .|+. |..... ..++++++ ...++|+||+-+..
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~----------------~~~a~~~l--------~~~~~dlii~d~~l 64 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN----------------PFDAGDLL--------HTVKPDVVMLDLMM 64 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS----------------HHHHHHHH--------HHTCCSEEEEETTC
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECC----------------HHHHHHHH--------HhcCCCEEEEeccc
Confidence 45566666653 3334444 6777 533221 34556666 33569999999886
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 65 ~~ 66 (143)
T 3cnb_A 65 VG 66 (143)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 57
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.87 E-value=96 Score=21.25 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=33.1
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
+|-.+|-+++. ++.+-+..|+.|..+. + ..++++++ ...+||+||+-+...+
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~al~~l--------~~~~~dlii~D~~l~~ 63 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVR-------N---------GREAVRFL--------SLTRPDLIISDVLMPE 63 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEES-------S---------HHHHHHHH--------TTCCCSEEEEESCCSS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeC-------C---------HHHHHHHH--------HhCCCCEEEEeCCCCC
Confidence 34566666654 4444556688774432 1 35677777 3467999999988764
No 58
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=33.55 E-value=61 Score=24.21 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCceeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.+|-.+|.+++.+ +.+-...|++|...... .++++++ ...++|+|++-+..
T Consensus 4 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~----------------~~al~~l--------~~~~~dlvilD~~l 59 (238)
T 2gwr_A 4 MRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDG----------------TQALTAV--------RELRPDLVLLDLML 59 (238)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCG----------------GGHHHHH--------HHHCCSEEEEESSC
T ss_pred ccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCH----------------HHHHHHH--------HhCCCCEEEEeCCC
Confidence 44677788887743 34444568887543321 2334444 22457888888876
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
++
T Consensus 60 ~~ 61 (238)
T 2gwr_A 60 PG 61 (238)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 59
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=33.47 E-value=40 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=22.1
Q ss_pred eeEeecCch-hhhhhhhhcceeeecC
Q 030891 5 AALITTNSR-LKSFGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~l-iksfg~~lGf~V~~~~ 29 (169)
+++|||++. ++.+|+..|..++.++
T Consensus 119 ~~Visn~~~a~~~~A~~~gIp~~~~~ 144 (287)
T 3nrb_A 119 VGIISNHPREALSVSLVGDIPFHYLP 144 (287)
T ss_dssp EEEEESSCGGGCCCCCCTTSCEEECC
T ss_pred EEEEeCChHHHHHHHHHcCCCEEEEe
Confidence 578999999 9999999999998765
No 60
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=33.45 E-value=64 Score=23.35 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCCceeEeecCch----hhhhhhhhcceee-ecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030891 1 MGLKAALITTNSR----LKSFGDKLGFATL-QLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 1 MGmKAA~Vt~~~l----iksfg~~lGf~V~-~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
|.+|-.+|-+.+. ++.+-...|+.|+ ... + ..++++++ ...+||+||+-+.
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~-------~---------~~~al~~~--------~~~~~dlvi~D~~ 67 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAG-------D---------GQEAVELA--------ELHKPDLVIMDVK 67 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEES-------S---------HHHHHHHH--------HHHCCSEEEEESS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeC-------C---------HHHHHHHH--------hhcCCCEEEEeCC
Confidence 4556667777764 3334445688774 222 1 24455555 2356999999998
Q ss_pred cCC
Q 030891 76 AGE 78 (169)
Q Consensus 76 a~d 78 (169)
.++
T Consensus 68 ~p~ 70 (205)
T 1s8n_A 68 MPR 70 (205)
T ss_dssp CSS
T ss_pred CCC
Confidence 775
No 61
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=33.06 E-value=43 Score=27.35 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=52.6
Q ss_pred hhhhhhhhhcceeeecCcc-cccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC
Q 030891 13 RLKSFGDKLGFATLQLNEL-IETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD 91 (169)
Q Consensus 13 liksfg~~lGf~V~~~~~l-~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d 91 (169)
.+...|..+|-.++++=.+ ++.-.- +.+.+ +.+.+|+--.=.+.++ .+++.-+-+|+ +
T Consensus 38 ~i~~~c~~~GI~~lTlYaFSteN~kR----p~~Ev-~~Lm~l~~~~l~~~~~-~~~~vrv~~iG---------------~ 96 (227)
T 2vg0_A 38 EMLRWCHEAGIELATVYLLSTENLQR----DPDEL-AALIEIITDVVEEICA-PANHWSVRTVG---------------D 96 (227)
T ss_dssp HHHHHHHHHTCSEEEEEEEETGGGGS----CHHHH-HHHHHHHHHHHHHHTC-TTTCCEEEEES---------------C
T ss_pred HHHHHHHHcCCCEEEEEeecccccCC----CHHHH-HHHHHHHHHHHHHHhc-cccCeEEEecC---------------C
Confidence 4556789999999999888 655433 22222 3333333100000011 14555555665 2
Q ss_pred hHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccc
Q 030891 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLE 129 (169)
Q Consensus 92 iE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~ 129 (169)
++.+..-+...++.+..-+.-..+++|.+-++||.=.|
T Consensus 97 ~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~e 134 (227)
T 2vg0_A 97 LGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRRE 134 (227)
T ss_dssp GGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHH
Confidence 33444444444444444455667899999999996443
No 62
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=32.69 E-value=48 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCceeEeecCch--hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhcccc
Q 030891 2 GLKAALITTNSR--LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58 (169)
Q Consensus 2 GmKAA~Vt~~~l--iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~e 58 (169)
|+|-+++||.+. +..+-+.+|+. .++......+....-+.-....++++.||+.-
T Consensus 126 g~~~~i~t~~~~~~~~~~l~~~~l~--~f~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~ 182 (240)
T 2hi0_A 126 GVKLAVVSNKPNEAVQVLVEELFPG--SFDFALGEKSGIRRKPAPDMTSECVKVLGVPR 182 (240)
T ss_dssp TCEEEEEEEEEHHHHHHHHHHHSTT--TCSEEEEECTTSCCTTSSHHHHHHHHHHTCCG
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCc--ceeEEEecCCCCCCCCCHHHHHHHHHHcCCCH
Confidence 678899999865 56666677754 22222222221112234456678889998654
No 63
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=32.55 E-value=1e+02 Score=19.97 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=30.6
Q ss_pred ceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccC-cccEEEEEeccC
Q 030891 4 KAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS-QFDLVLVHIGAG 77 (169)
Q Consensus 4 KAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s-~fDlVFlHI~a~ 77 (169)
+-.+|.+++. ++..-...|+.|..+.. ..++++++ ... ++|+||+-+...
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~~dlvi~d~~l~ 61 (132)
T 2rdm_A 7 TILLADDEAILLLDFESTLTDAGFLVTAVSS----------------GAKAIEML--------KSGAAIDGVVTDIRFC 61 (132)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HTTCCCCEEEEESCCS
T ss_pred eEEEEcCcHHHHHHHHHHHHHcCCEEEEECC----------------HHHHHHHH--------HcCCCCCEEEEeeeCC
Confidence 4566666663 44444567888753221 34566666 223 799999988765
No 64
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.72 E-value=43 Score=23.17 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCceeEeecCch----hhhhhhhhcceee-ecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccC--cccEEEEEe
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATL-QLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS--QFDLVLVHI 74 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~-~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s--~fDlVFlHI 74 (169)
.+|-.+|-+++. ++.+-+..|+.|+ .... ..++++++ ... +||+||+-+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~----------------~~~al~~l--------~~~~~~~dliilD~ 91 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAAD----------------GEEAVIKY--------KNHYPNIDIVTLXI 91 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESS----------------HHHHHHHH--------HHHGGGCCEEEECS
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECC----------------HHHHHHHH--------HhcCCCCCEEEEec
Confidence 456667776654 3444455688774 2221 34555665 223 789999998
Q ss_pred ccCC
Q 030891 75 GAGE 78 (169)
Q Consensus 75 ~a~d 78 (169)
...+
T Consensus 92 ~l~~ 95 (157)
T 3hzh_A 92 TMPK 95 (157)
T ss_dssp SCSS
T ss_pred cCCC
Confidence 8764
No 65
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.40 E-value=31 Score=26.30 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=27.7
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030891 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
|.+.|....+.+|++|.... .+. |.+...+.+.+++ + .++|+|+.-
T Consensus 28 n~~~l~~~l~~~G~~v~~~~-iv~--------Dd~~i~~al~~a~--------~-~~~DlVitt 73 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPE-VVA--------DGSPVGEALRKAI--------D-DDVDVILTS 73 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCE-EEC--------SSHHHHHHHHHHH--------H-TTCSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE-EeC--------CHHHHHHHHHHHH--------h-CCCCEEEEC
Confidence 44667888888999985432 222 3344444444555 1 268999864
No 66
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=31.02 E-value=36 Score=25.92 Aligned_cols=55 Identities=11% Similarity=0.271 Sum_probs=34.9
Q ss_pred CceeEee-----------cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEE
Q 030891 3 LKAALIT-----------TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVL 71 (169)
Q Consensus 3 mKAA~Vt-----------~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVF 71 (169)
+|+++|| |.+.|...-+.+|++|... ..++ + +.+...+.+-+++ +...+|+|+
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~-~iv~---D----d~~~i~~~l~~a~--------~~~~~DlVi 74 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDK-AIVK---E----NRYAIRAQVSAWI--------ASDDVQVVL 74 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEE-EEEC---S----CHHHHHHHHHHHH--------HSSSCCEEE
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEE-EEeC---C----CHHHHHHHHHHHH--------hcCCCCEEE
Confidence 5677775 5577888888999998653 2222 2 4555555555566 111489997
Q ss_pred EE
Q 030891 72 VH 73 (169)
Q Consensus 72 lH 73 (169)
.=
T Consensus 75 tt 76 (172)
T 1mkz_A 75 IT 76 (172)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 67
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.48 E-value=1e+02 Score=20.16 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=30.4
Q ss_pred ceeEeecCc----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 4 KAALITTNS----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 4 KAA~Vt~~~----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
|-.+|.+++ .++.+-+..|+.|..... ..++++++ ...++|+||+-+...
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlvi~d~~~~ 58 (140)
T 2qr3_A 5 TIIIVDDNKGVLTAVQLLLKNHFSKVITLSS----------------PVSLSTVL--------REENPEVVLLDMNFT 58 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTSSEEEEECC----------------HHHHHHHH--------HHSCEEEEEEETTTT
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCcEEEEeCC----------------HHHHHHHH--------HcCCCCEEEEeCCcC
Confidence 445555554 345555566888753321 34566666 235699999998765
No 68
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.53 E-value=1.3e+02 Score=20.36 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=31.8
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
++-.+|.+++. ++..-+..|+.|..... ..++++++ ...+||+||+-+...+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlvi~d~~l~~ 63 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTS----------------PLDALEAL--------KGTSVQLVISDMRMPE 63 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESC----------------HHHHHHHH--------TTSCCSEEEEESSCSS
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC----------------HHHHHHHH--------hcCCCCEEEEecCCCC
Confidence 45566666654 33344456787743221 34667777 3356999999988664
No 69
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.65 E-value=86 Score=21.05 Aligned_cols=54 Identities=15% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCCc--eeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030891 1 MGLK--AALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 1 MGmK--AA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
|+|+ -.+|-+++.+ +.+-...|+.|.... + ..++++++ ...++|+||+-+
T Consensus 1 m~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~a~~~l--------~~~~~dlvllD~ 56 (137)
T 3cfy_A 1 MSLRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVE-------T---------GRDAIQFI--------ERSKPQLIILDL 56 (137)
T ss_dssp --CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEES-------S---------HHHHHHHH--------HHHCCSEEEECS
T ss_pred CCccceEEEEeCCHHHHHHHHHHHHhcCceEEEeC-------C---------HHHHHHHH--------HhcCCCEEEEec
Confidence 5664 4566666543 333344567664321 1 34556666 235789999988
Q ss_pred ccCC
Q 030891 75 GAGE 78 (169)
Q Consensus 75 ~a~d 78 (169)
...+
T Consensus 57 ~l~~ 60 (137)
T 3cfy_A 57 KLPD 60 (137)
T ss_dssp BCSS
T ss_pred CCCC
Confidence 8764
No 70
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.35 E-value=93 Score=20.08 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCceeEeecCchh----hhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRL----KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~li----ksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.++-.+|-+++.+ +..-+..|+.|.... + ..++++++ ...++|+||+-+..
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~-------~---------~~~a~~~~--------~~~~~dlvl~D~~l 57 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAA-------N---------GLQALDIV--------TKERPDLVLLDMKI 57 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEES-------S---------HHHHHHHH--------HHHCCSEEEEESCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeC-------C---------HHHHHHHH--------hccCCCEEEEecCC
Confidence 34566666666543 333445577764322 1 24556666 23568999999887
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 58 ~~ 59 (124)
T 1srr_A 58 PG 59 (124)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 71
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=28.23 E-value=1.9e+02 Score=21.60 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=40.3
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCC
Q 030891 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 85 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~ 85 (169)
.++|+...+..+++..|..++.-+.-..+... ........+++.++ .+.|.|++|-+..
T Consensus 49 vvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----g~~~sv~~~l~~~~---------~~~d~vlv~~~D~-------- 107 (228)
T 1ezi_A 49 IVSTDGGLIAEEAKNFGVEVVLRPAELASDTA----SSISGVIHALETIG---------SNSGTVTLLQPTS-------- 107 (228)
T ss_dssp EEEESCHHHHHHHHHTTCEEEECCC------C----HHHHHHHHHHHHHT---------CCSEEEEECCTTC--------
T ss_pred EEECCCHHHHHHHHHcCCEEEeCchHHcCCCC----ChHHHHHHHHHHhC---------CCCCEEEEEcCCC--------
Confidence 46777777888888889887644331111111 22344556666662 2458888887632
Q ss_pred cccccChHHHHHHHH
Q 030891 86 KAVAHDLEYINALVR 100 (169)
Q Consensus 86 ~~~k~diE~iD~lVg 100 (169)
.=.+-+.|++++.
T Consensus 108 --P~~~~~~i~~l~~ 120 (228)
T 1ezi_A 108 --PLRTGAHIREAFS 120 (228)
T ss_dssp --TTCCHHHHHHHHT
T ss_pred --CcCCHHHHHHHHH
Confidence 2233456666654
No 72
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=27.92 E-value=1.3e+02 Score=24.10 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.1
Q ss_pred eeEeecCchhhh--hhhhhcceeeecC
Q 030891 5 AALITTNSRLKS--FGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~liks--fg~~lGf~V~~~~ 29 (169)
.++|||.+...+ .|+..|..|++++
T Consensus 35 ~~Vis~~~~a~~~~~A~~~gIp~~~~~ 61 (215)
T 3tqr_A 35 RAVISNRADAYGLKRAQQADIPTHIIP 61 (215)
T ss_dssp EEEEESCTTCHHHHHHHHTTCCEEECC
T ss_pred EEEEeCCcchHHHHHHHHcCCCEEEeC
Confidence 468898887755 6999999998865
No 73
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.82 E-value=1.4e+02 Score=20.07 Aligned_cols=55 Identities=9% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCceeEeecCchhh-hhhhhh-----cceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030891 1 MGLKAALITTNSRLK-SFGDKL-----GFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 1 MGmKAA~Vt~~~lik-sfg~~l-----Gf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
|.+|-.+|-+++... .+...| |+.++ +... ...++++++ ...++|+||+=+
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~------~~~~---------~~~~al~~~--------~~~~~dlvllD~ 57 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQI------DQAD---------DGINAIQIA--------LKHPPNVLLTDV 57 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEE------EEES---------SHHHHHHHH--------TTSCCSEEEEES
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHccCCcEEe------eecc---------cHHHHHHHH--------hcCCCCEEEEeC
Confidence 556777777777544 344444 44442 1111 135666666 335799999988
Q ss_pred ccCC
Q 030891 75 GAGE 78 (169)
Q Consensus 75 ~a~d 78 (169)
..++
T Consensus 58 ~lp~ 61 (141)
T 3cu5_A 58 RMPR 61 (141)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 74
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.64 E-value=85 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 2 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 2 GmKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
.||-.+|.+++. ++.+-+..|+.|..+.. ..++++++ ...+||+||+-+...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----------------~~~a~~~l--------~~~~~dlvi~d~~l~ 62 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGD----------------GEEGERLF--------GLHAPDVIITDIRMP 62 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESS----------------HHHHHHHH--------HHHCCSEEEECSSCS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECC----------------HHHHHHHH--------hccCCCEEEEeCCCC
Confidence 356777777764 33333445666633221 34566666 335799999988766
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 63 ~ 63 (137)
T 3hdg_A 63 K 63 (137)
T ss_dssp S
T ss_pred C
Confidence 4
No 75
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.61 E-value=81 Score=20.45 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=17.2
Q ss_pred HHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 47 ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 47 a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
..++++++ ...++|+|++-+..++
T Consensus 38 ~~~a~~~~--------~~~~~dlvi~D~~l~~ 61 (128)
T 1jbe_A 38 GVDALNKL--------QAGGYGFVISDWNMPN 61 (128)
T ss_dssp HHHHHHHH--------TTCCCCEEEEESCCSS
T ss_pred HHHHHHHH--------HhcCCCEEEEeCCCCC
Confidence 35566766 3357999999988764
No 76
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=25.43 E-value=57 Score=27.62 Aligned_cols=49 Identities=8% Similarity=0.201 Sum_probs=38.5
Q ss_pred CchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030891 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 11 ~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
.+.-.-+.+.+|+++++.+++ .. .....++++++.+ ++.|-|+||+..+
T Consensus 188 ~~~e~~~~~~~gi~~~~~~ei-~~-------g~~~v~~~~~~~l----------~~~~~vylS~DiD 236 (330)
T 4g3h_A 188 EQSERDVIRELQIPLFSVDAI-RE-------NMQEVVQKTKESL----------KAVDIIYLSLDLD 236 (330)
T ss_dssp CHHHHHHHHHHTCCEECHHHH-HH-------CHHHHHHHHHHHH----------TTCSEEEEEEEGG
T ss_pred CHHHHHHHHHcCCeEEEHHHh-hc-------CHHHHHHHHHHHh----------cCCCeEEEEEecC
Confidence 344566788999999999998 43 5677889999988 5568899998754
No 77
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.30 E-value=99 Score=23.29 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=31.2
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
+|-.+|-+++. ++.+-...|++|..... ..++++++ ...+||+||+-+...+
T Consensus 24 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~al~~~--------~~~~~dlvllD~~lp~ 79 (250)
T 3r0j_A 24 ARVLVVDDEANIVELLSVSLKFQGFEVYTATN----------------GAQALDRA--------RETRPDAVILDVXMPG 79 (250)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHHCCSEEEEESCCSS
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECC----------------HHHHHHHH--------HhCCCCEEEEeCCCCC
Confidence 45666666654 33344556787743221 24556665 3356899999887765
No 78
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=25.27 E-value=2.6e+02 Score=22.20 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=47.8
Q ss_pred eEeecCchhhhhhhhhcceeeecC-c-ccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcC
Q 030891 6 ALITTNSRLKSFGDKLGFATLQLN-E-LIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDD 83 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~-~-l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hd 83 (169)
.++|+...|..+++..|..++... + ..| .+ -...+++.++. .+.|.|++|-+..
T Consensus 46 vVvt~~~~i~~~~~~~g~~v~~~~~~~~~G---------t~-~i~~a~~~~~~--------~~~d~vlv~~gD~------ 101 (253)
T 4fcu_A 46 CVATDDERIAEICRAEGVDVVLTSADHPSG---------TD-RLSEVARIKGW--------DADDIIVNVQGDE------ 101 (253)
T ss_dssp EEEESCHHHHHHHHTTTCCEEECCTTCCCH---------HH-HHHHHHHHHTC--------CTTCEEEECCTTC------
T ss_pred EEECCHHHHHHHHHHcCCeEEEeCCCCCCh---------HH-HHHHHHHhcCc--------CCCCEEEEEeCCc------
Confidence 467888889999999999886432 1 111 12 34566777721 2468888887744
Q ss_pred CCcccccChHHHHHHHHHHHHh
Q 030891 84 KGKAVAHDLEYINALVRVILQM 105 (169)
Q Consensus 84 G~~~~k~diE~iD~lVg~im~~ 105 (169)
.=++-+.|++++....+.
T Consensus 102 ----Pli~~~~i~~li~~~~~~ 119 (253)
T 4fcu_A 102 ----PLLPAQLVQQVAKLLVDK 119 (253)
T ss_dssp ----TTCCHHHHHHHHHHHHHC
T ss_pred ----ccCCHHHHHHHHHHHHhC
Confidence 345568899999876654
No 79
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=25.04 E-value=1.5e+02 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.3
Q ss_pred eeEeecCc--hhhhhhhhhcceeeecC
Q 030891 5 AALITTNS--RLKSFGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~--liksfg~~lGf~V~~~~ 29 (169)
.++|||.+ .++-.|+..|..|+.++
T Consensus 33 ~~Visn~~~a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 33 ALLITDKPGAKVVERVKVHEIPVCALD 59 (211)
T ss_dssp EEEEESCSSSHHHHHHHTTTCCEEECC
T ss_pred EEEEECCCCcHHHHHHHHcCCCEEEeC
Confidence 46788864 56778999999987654
No 80
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.91 E-value=87 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=19.6
Q ss_pred eeEeecCchhhh--hhhhhcceeeecC
Q 030891 5 AALITTNSRLKS--FGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~liks--fg~~lGf~V~~~~ 29 (169)
.++|||.+...+ .|+..|..|+.++
T Consensus 39 ~~Vis~~~~a~~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 39 SCVISNNAEARGLLIAQSYGIPTFVVK 65 (215)
T ss_dssp EEEEESCTTCTHHHHHHHTTCCEEECC
T ss_pred EEEEeCCcchHHHHHHHHcCCCEEEeC
Confidence 468898877655 7999999998764
No 81
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.63 E-value=1.3e+02 Score=18.58 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=30.3
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
++-.+|.+++. ++..-+..|+.|..... ..++++.+ ...+||+|++.+...+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~----------------~~~~~~~l--------~~~~~dlii~d~~~~~ 57 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVD----------------GSTALDQL--------DLLQPIVILMAWPPPD 57 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESC----------------HHHHHHHH--------HHHCCSEEEEECSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecC----------------HHHHHHHH--------HhcCCCEEEEecCCCC
Confidence 45556666653 33444456887744321 24455555 2356899999887653
No 82
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.59 E-value=70 Score=21.14 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=11.5
Q ss_pred CcccEEEEEeccCC
Q 030891 65 SQFDLVLVHIGAGE 78 (169)
Q Consensus 65 s~fDlVFlHI~a~d 78 (169)
..||+||+.+...+
T Consensus 61 ~~~dlvi~D~~l~~ 74 (149)
T 1k66_A 61 PRPAVILLDLNLPG 74 (149)
T ss_dssp CCCSEEEECSCCSS
T ss_pred CCCcEEEEECCCCC
Confidence 57999999988764
No 83
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=24.42 E-value=1.6e+02 Score=19.57 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=31.8
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
+|-.+|-+++. ++.+-+..|++|..... ..++++++ . ...+||+||+-+...+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--~-----~~~~~dlvi~D~~l~~ 62 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALT----------------GEAAVEKV--S-----GGWYPDLILMDIELGE 62 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--H-----TTCCCSEEEEESSCSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecC----------------hHHHHHHH--h-----cCCCCCEEEEeccCCC
Confidence 35566666653 44455566888754321 24556666 0 1157999999988753
No 84
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.38 E-value=1.2e+02 Score=20.09 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=32.2
Q ss_pred CceeEeecCch----hhhhhhh-hcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCccccc-CcccEEEEEecc
Q 030891 3 LKAALITTNSR----LKSFGDK-LGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEV-SQFDLVLVHIGA 76 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~-lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~-s~fDlVFlHI~a 76 (169)
+|-.+|-+++. ++.+-+. .|++|..... ..++++++ .. .+||+||+-+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~----------------~~~a~~~l--------~~~~~~dlvi~D~~l 60 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVEN----------------LKKFYSIF--------KDLDSITLIIMDIAF 60 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECS----------------HHHHHTTT--------TTCCCCSEEEECSCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECC----------------HHHHHHHH--------hcCCCCcEEEEeCCC
Confidence 45666666654 3344444 7888854332 35677777 34 679999998876
Q ss_pred C
Q 030891 77 G 77 (169)
Q Consensus 77 ~ 77 (169)
.
T Consensus 61 ~ 61 (140)
T 3lua_A 61 P 61 (140)
T ss_dssp S
T ss_pred C
Confidence 5
No 85
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=24.33 E-value=90 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=17.8
Q ss_pred eeEeecCchhhhh--hhhhcceeeec
Q 030891 5 AALITTNSRLKSF--GDKLGFATLQL 28 (169)
Q Consensus 5 AA~Vt~~~liksf--g~~lGf~V~~~ 28 (169)
+++||+.+...+. |+..|..|+.+
T Consensus 31 ~~Vvs~~~~~~~~~~A~~~gIp~~~~ 56 (209)
T 1meo_A 31 DIVISNKAAVAGLDKAERAGIPTRVI 56 (209)
T ss_dssp EEEEESSTTCHHHHHHHHTTCCEEEC
T ss_pred EEEEeCCCChHHHHHHHHcCCCEEEE
Confidence 4678888765554 99999998743
No 86
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=24.19 E-value=61 Score=20.78 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=29.3
Q ss_pred ceeEeecCc----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 4 KAALITTNS----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 4 KAA~Vt~~~----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
|-.+|-+++ .++.+-...|+.|.... + ..++++++ ...++|+|++-+..++
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~-------~---------~~~a~~~~--------~~~~~dlil~D~~l~~ 56 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAE-------D---------AKEADYYL--------NEHIPDIAIVDLGLPD 56 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-------S---------HHHHHHHH--------HHSCCSEEEECSCCSS
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeC-------C---------HHHHHHHH--------hccCCCEEEEecCCCC
Confidence 444555555 33444455677764321 1 24556666 2356899999887664
No 87
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=23.87 E-value=1.4e+02 Score=21.68 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCceeEeecCch--hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhcccc
Q 030891 1 MGLKAALITTNSR--LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58 (169)
Q Consensus 1 MGmKAA~Vt~~~l--iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~e 58 (169)
.|++-+++|+.+. +..+.+.+|++++.-. .+--....++++.+|+..
T Consensus 54 ~g~~~~i~T~~~~~~~~~~~~~lgi~~~~~~-----------~~k~~~l~~~~~~~~~~~ 102 (176)
T 3mmz_A 54 SGLTMLILSTEQNPVVAARARKLKIPVLHGI-----------DRKDLALKQWCEEQGIAP 102 (176)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHTCCEEESC-----------SCHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEECcChHHHHHHHHHcCCeeEeCC-----------CChHHHHHHHHHHcCCCH
Confidence 3788899998764 8889999999843221 144456677788886543
No 88
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=23.72 E-value=46 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhcccc
Q 030891 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~e 58 (169)
|++-+++||.+.+..+-+.+|+.-+ ++......+....-+.-....++++.||...
T Consensus 108 g~~~~i~t~~~~~~~~l~~~gl~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~ 163 (233)
T 3nas_A 108 NIKIGLASSSRNAPKILRRLAIIDD-FHAIVDPTTLAKGKPDPDIFLTAAAMLDVSP 163 (233)
T ss_dssp TCEEEECCSCTTHHHHHHHTTCTTT-CSEECCC---------CCHHHHHHHHHTSCG
T ss_pred CCcEEEEcCchhHHHHHHHcCcHhh-cCEEeeHhhCCCCCCChHHHHHHHHHcCCCH
Confidence 6788999999888888888886311 1111111111101122345678889998654
No 89
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=23.68 E-value=1.8e+02 Score=22.33 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=31.3
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
+|-.+|-+++. ++.+-+..|++|..... ..++++++ ...+||+||+-+.+.+
T Consensus 130 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~----------------~~eal~~l--------~~~~~dlvl~D~~mp~ 185 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSLGYQCKTAND----------------GVDALNVL--------SKNHIDIVLSDVNMPN 185 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTSEEEEECC----------------SHHHHHHH--------HHSCCSEEEEEESSCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECC----------------HHHHHHHH--------HhCCCCEEEEcCCCCC
Confidence 44556666653 33444556887743321 13556665 2356999999998875
No 90
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.44 E-value=79 Score=21.06 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=31.7
Q ss_pred ceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 4 KAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 4 KAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
|-.+|-+++. ++.+-+..|++|..... ..++++++ ...+||+||+-+...+
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dlvi~D~~l~~ 62 (136)
T 3kto_A 8 IIYLVDHQKDARAALSKLLSPLDVTIQCFAS----------------AESFMRQQ--------ISDDAIGMIIEAHLED 62 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSSEEEEESS----------------HHHHTTSC--------CCTTEEEEEEETTGGG
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC----------------HHHHHHHH--------hccCCCEEEEeCcCCC
Confidence 4556666653 44444556888754322 34566666 3467999999887654
No 91
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.27 E-value=79 Score=20.96 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=30.5
Q ss_pred CceeEeecCc----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCccccc-CcccEEEEEeccC
Q 030891 3 LKAALITTNS----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEV-SQFDLVLVHIGAG 77 (169)
Q Consensus 3 mKAA~Vt~~~----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~-s~fDlVFlHI~a~ 77 (169)
++-.+|-+++ .++.+-...|+.|..... ..++++++ .. .++|+||+-+...
T Consensus 16 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~al~~l--------~~~~~~dlvilD~~l~ 71 (138)
T 2b4a_A 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPS----------------GSAFFQHR--------SQLSTCDLLIVSDQLV 71 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHTG--------GGGGSCSEEEEETTCT
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCCEEEEeCC----------------HHHHHHHH--------HhCCCCCEEEEeCCCC
Confidence 3445555555 334444556777633221 35666776 33 5699999988876
Q ss_pred C
Q 030891 78 E 78 (169)
Q Consensus 78 d 78 (169)
+
T Consensus 72 ~ 72 (138)
T 2b4a_A 72 D 72 (138)
T ss_dssp T
T ss_pred C
Confidence 4
No 92
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=22.96 E-value=63 Score=21.62 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=31.3
Q ss_pred CCCceeEeecCchhh----hhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030891 1 MGLKAALITTNSRLK----SFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 1 MGmKAA~Vt~~~lik----sfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
|.++-.+|-+++... .+-...|+.|... . ...++++++ ...++|+||+-+..
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~-------~---------~~~~al~~l--------~~~~~dlvllD~~l 64 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVV-------T---------NGLQALQAY--------QNRQFDVIIMDIQM 64 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEE-------S---------SHHHHHHHH--------HHSCCSEEEECTTC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEE-------C---------CHHHHHHHH--------hcCCCCEEEEeCCC
Confidence 345666666665432 3334456666432 1 135566666 33579999998877
Q ss_pred CC
Q 030891 77 GE 78 (169)
Q Consensus 77 ~d 78 (169)
.+
T Consensus 65 p~ 66 (140)
T 3c97_A 65 PV 66 (140)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 93
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=22.71 E-value=1.8e+02 Score=19.57 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=11.6
Q ss_pred CcccEEEEEeccCC
Q 030891 65 SQFDLVLVHIGAGE 78 (169)
Q Consensus 65 s~fDlVFlHI~a~d 78 (169)
.+||+||+-+...+
T Consensus 47 ~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 47 DPFSVIMVDMRMPG 60 (151)
T ss_dssp CCCSEEEEESCCSS
T ss_pred CCCCEEEEeCCCCC
Confidence 45899999998765
No 94
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.57 E-value=1.4e+02 Score=21.74 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=30.2
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
||-.+|.+++. ++.+-...|++|..... ..++++++ ...++|+||+-+..++
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~~--------~~~~~dlvllD~~l~~ 63 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVD----------------GAEALRSA--------TENRPDAIVLDINMPV 63 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHSCCSEEEEESSCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECC----------------HHHHHHHH--------HhCCCCEEEEeCCCCC
Confidence 56667777763 33344456887743221 23455555 2356888888887654
No 95
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=21.83 E-value=1.1e+02 Score=21.92 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCceeEeecCch--hhhhhhhhcc----eeeecCcccccCCCCCCCChhHHHHHHHHHhccccC
Q 030891 2 GLKAALITTNSR--LKSFGDKLGF----ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRG 59 (169)
Q Consensus 2 GmKAA~Vt~~~l--iksfg~~lGf----~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~eg 59 (169)
|++-+++||++. +..+-+.+|+ +.+-..+-++. .-+.-..-.++++.||+.-.
T Consensus 100 g~~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~~~~~-----~KP~p~~~~~a~~~lg~~p~ 158 (216)
T 3kbb_A 100 RIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKN-----GKPDPEIYLLVLERLNVVPE 158 (216)
T ss_dssp TCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSS-----CTTSTHHHHHHHHHHTCCGG
T ss_pred CCCcccccCCcHHHHHHHHHhcCCCccccccccccccCC-----CcccHHHHHHHHHhhCCCcc
Confidence 778899999874 4555666674 33333333332 22444567889999986553
No 96
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=21.61 E-value=91 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 48 SELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 48 ~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
.++++++ ...++|+||+-+...+
T Consensus 41 ~~a~~~~--------~~~~~dlvl~D~~l~~ 63 (129)
T 1p6q_A 41 EQGMKIM--------AQNPHHLVISDFNMPK 63 (129)
T ss_dssp HHHHHHH--------HTSCCSEEEECSSSCS
T ss_pred HHHHHHH--------HcCCCCEEEEeCCCCC
Confidence 4566666 3357999999887664
No 97
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=21.37 E-value=38 Score=27.78 Aligned_cols=45 Identities=4% Similarity=0.130 Sum_probs=33.1
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHH
Q 030891 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKL 53 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~L 53 (169)
-+||....+..|.+.+|-+.+++. ++....+ ...|+.+++-+.++
T Consensus 14 ~Vvas~~pl~~~v~~I~Gd~v~V~-lv~~g~d--PH~yeptp~d~~~l 58 (286)
T 3gi1_A 14 SVVTSFYPMYAMTKEVSGDLNDVR-MIQSGAG--IHSFEPSVNDVAAI 58 (286)
T ss_dssp EEEESSHHHHHHHHHHHTTSSEEE-EC-------CCSCCCCHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHhCCeeEEE-EcCCCCC--CccccCCHHHHHHH
Confidence 479999999999999999999999 8643322 35777777776655
No 98
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=21.15 E-value=2.1e+02 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred HHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 48 SELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 48 ~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
.+|++++ ...+||+|++-+.++|
T Consensus 195 ~eAl~~~--------~~~~~dlvl~D~~MPd 217 (286)
T 3n0r_A 195 GEALEAV--------TRRTPGLVLADIQLAD 217 (286)
T ss_dssp HHHHHHH--------HHCCCSEEEEESCCTT
T ss_pred HHHHHHH--------HhCCCCEEEEcCCCCC
Confidence 4666666 3467999999999884
No 99
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.61 E-value=1.9e+02 Score=19.46 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=31.9
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
++-.+|.+++. ++..-...|+.|..... ..++++++ ....+|+||+-+...+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~----------------~~~a~~~l--------~~~~~dliild~~l~~ 59 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS----------------ATEALAGL--------SADFAGIVISDIRMPG 59 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC----------------HHHHHHTC--------CTTCCSEEEEESCCSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC----------------HHHHHHHH--------HhCCCCEEEEeCCCCC
Confidence 45556666653 33444556887743221 35667776 3367999999987654
No 100
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.56 E-value=44 Score=27.19 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=34.1
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHH
Q 030891 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKL 53 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~L 53 (169)
-+||..+.+..|.+.+|-+.+++. ++....+ ...|+-+++-+.++
T Consensus 12 ~Vvas~~pl~~~v~~I~Gd~v~V~-l~~~g~d--PH~yeptp~d~~~l 56 (284)
T 3cx3_A 12 KIVTSFYPIYAMVKEVSGDLNDVR-MIQSSSG--IHSFEPSANDIAAI 56 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTSSEEE-ECCCCSC--TTTCCCCHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHcCCceEEE-EcCCCCC--CccccCCHHHHHHH
Confidence 489999999999999999988888 8654322 24777777666544
No 101
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.33 E-value=1.7e+02 Score=20.80 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=32.2
Q ss_pred CceeEeecCch----hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030891 3 LKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 3 mKAA~Vt~~~l----iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
+|-.+|-+++. ++.+-...|+.|.... + ..++++++ ...+||+||+-+..++
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~-------~---------~~~al~~~--------~~~~~dlvl~D~~lp~ 63 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAH-------N---------KDEALKLA--------GAEKFEFITVXLHLGN 63 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEC-------S---------HHHHHHHH--------TTSCCSEEEECSEETT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeC-------C---------HHHHHHHH--------hhCCCCEEEEeccCCC
Confidence 45566666654 3344445688774322 1 34667777 3467999999888765
No 102
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=20.30 E-value=77 Score=26.53 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=49.7
Q ss_pred CchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCC----cCcCCCc
Q 030891 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK----TNDDKGK 86 (169)
Q Consensus 11 ~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~----a~hdG~~ 86 (169)
.+....+.+.+|+++++.+++... ..+..++++++.++ ...|-|+||+..+=- +-.-|..
T Consensus 197 ~~~e~~~~~~~g~~~~~~~ei~~~-------g~~~v~~~~~~~~~---------~~~~~vylSiDiDvLDpa~aPgtgtp 260 (322)
T 3m1r_A 197 SQAYEAYAKKHNVNIHTMDMIREK-------GLIPTIKEILPVVQ---------DKTDFIFISVDMDVLDQSHAPGCPAI 260 (322)
T ss_dssp CHHHHHHHHHTTCEEEEHHHHHHH-------CHHHHHHHHHHHHH---------TTCSEEEEEEEGGGBCTTTCTTSSSC
T ss_pred CHHHHHHHHHCCCEEEEHHHHhhc-------CHHHHHHHHHHHhh---------ccCCeEEEEEeecccChhhCCCCCCC
Confidence 455567788999999999988653 56778888888884 345789999875422 1222222
Q ss_pred -ccccChHHHHHHHHHHH
Q 030891 87 -AVAHDLEYINALVRVIL 103 (169)
Q Consensus 87 -~~k~diE~iD~lVg~im 103 (169)
..-.....+=.++..+.
T Consensus 261 ~pgGlt~~e~~~il~~l~ 278 (322)
T 3m1r_A 261 GPGGLYTDELLEAVKYIA 278 (322)
T ss_dssp CSSCBCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 23344555555665554
No 103
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=20.29 E-value=2.4e+02 Score=22.45 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=31.8
Q ss_pred eeEeecCc-hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEE
Q 030891 5 AALITTNS-RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLV 72 (169)
Q Consensus 5 AA~Vt~~~-liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFl 72 (169)
.++|||.+ ..+-.|+..|..+++++ .... . +-..--.++++.| +.-+.|++++
T Consensus 42 ~~Vis~~~a~~~~~A~~~gIp~~~~~-~~~~-~-----~r~~~d~~~~~~l--------~~~~~Dlivl 95 (215)
T 3da8_A 42 VAVGVDRECRAAEIAAEASVPVFTVR-LADH-P-----SRDAWDVAITAAT--------AAHEPDLVVS 95 (215)
T ss_dssp EEEEESSCCHHHHHHHHTTCCEEECC-GGGS-S-----SHHHHHHHHHHHH--------HTTCCSEEEE
T ss_pred EEEEeCCchHHHHHHHHcCCCEEEeC-cccc-c-----chhhhhHHHHHHH--------HhhCCCEEEE
Confidence 46778776 34567999999999983 3211 1 1111123455666 3456799887
No 104
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=20.19 E-value=99 Score=23.25 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=34.5
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccC
Q 030891 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRG 59 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~eg 59 (169)
|++-|++|+++....+-+.+|+.-+ ++......+....-+.-..-.++++.||..-.
T Consensus 111 g~~i~i~t~~~~~~~~l~~~gl~~~-fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~ 167 (243)
T 4g9b_A 111 QISVGLASVSLNAPTILAALELREF-FTFCADASQLKNSKPDPEIFLAACAGLGVPPQ 167 (243)
T ss_dssp TCEEEECCCCTTHHHHHHHTTCGGG-CSEECCGGGCSSCTTSTHHHHHHHHHHTSCGG
T ss_pred cccceecccccchhhhhhhhhhccc-cccccccccccCCCCcHHHHHHHHHHcCCChH
Confidence 6788999998888777777885321 11122211211122445667889999987554
Done!