Query 030892
Match_columns 169
No_of_seqs 127 out of 1476
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 09:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.1E-23 7.2E-28 151.1 12.0 161 2-164 104-280 (328)
2 4fcg_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 147.3 11.0 163 1-166 126-306 (328)
3 3rgz_A Protein brassinosteroid 99.8 1.8E-19 6.1E-24 143.4 14.0 78 89-166 631-709 (768)
4 1ozn_A Reticulon 4 receptor; N 99.8 5.1E-19 1.7E-23 125.6 12.2 127 37-164 75-204 (285)
5 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-19 1.8E-23 127.3 12.2 165 1-166 100-296 (313)
6 3rgz_A Protein brassinosteroid 99.8 7E-19 2.4E-23 140.0 14.1 165 2-166 442-685 (768)
7 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-19 1.1E-23 128.4 10.3 165 1-166 75-273 (313)
8 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-18 1.1E-22 121.5 13.1 164 1-166 55-230 (285)
9 2o6q_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 119.2 13.6 160 3-166 38-210 (270)
10 3m19_A Variable lymphocyte rec 99.8 4.4E-18 1.5E-22 118.8 12.6 160 4-166 16-184 (251)
11 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 123.8 10.8 128 37-165 121-252 (306)
12 4ezg_A Putative uncharacterize 99.8 3.1E-18 1.1E-22 115.5 11.1 142 2-166 44-186 (197)
13 3zyj_A Leucine-rich repeat-con 99.8 6.1E-18 2.1E-22 126.8 13.1 134 31-165 124-283 (440)
14 3rfs_A Internalin B, repeat mo 99.8 1.4E-17 5E-22 117.5 14.0 161 2-166 41-210 (272)
15 2z66_A Variable lymphocyte rec 99.8 4.4E-18 1.5E-22 121.8 11.0 131 35-166 94-228 (306)
16 3zyi_A Leucine-rich repeat-con 99.8 9E-18 3.1E-22 126.3 13.2 77 88-165 216-294 (452)
17 3vq2_A TLR4, TOLL-like recepto 99.8 4E-18 1.4E-22 132.2 10.9 128 37-165 419-549 (606)
18 4eco_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 134.5 9.0 136 29-166 193-358 (636)
19 1p9a_G Platelet glycoprotein I 99.8 2E-17 6.7E-22 117.9 13.0 159 2-164 10-198 (290)
20 3zyj_A Leucine-rich repeat-con 99.7 1.7E-17 5.9E-22 124.4 12.4 110 37-149 180-291 (440)
21 3zyi_A Leucine-rich repeat-con 99.7 3E-17 1E-21 123.5 12.9 163 1-166 98-271 (452)
22 3vq2_A TLR4, TOLL-like recepto 99.7 9.8E-18 3.4E-22 130.0 10.0 165 1-166 349-526 (606)
23 1p9a_G Platelet glycoprotein I 99.7 5.5E-17 1.9E-21 115.6 12.8 119 29-150 87-208 (290)
24 1xku_A Decorin; proteoglycan, 99.7 5.7E-17 2E-21 117.2 12.8 109 37-147 140-273 (330)
25 2o6q_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 113.6 13.1 160 3-166 17-186 (270)
26 4eco_A Uncharacterized protein 99.7 6.8E-18 2.3E-22 131.9 8.1 155 1-158 248-423 (636)
27 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4.3E-22 115.6 8.4 124 29-155 91-222 (239)
28 4ecn_A Leucine-rich repeat pro 99.7 9.6E-18 3.3E-22 134.5 8.9 155 1-160 447-641 (876)
29 3v47_A TOLL-like receptor 5B a 99.7 4.1E-17 1.4E-21 122.5 11.5 123 42-165 275-399 (455)
30 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.4E-22 121.3 8.8 134 31-165 64-202 (353)
31 2z62_A TOLL-like receptor 4, v 99.7 6.9E-17 2.4E-21 114.1 11.6 86 37-122 71-158 (276)
32 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.9E-21 111.6 13.8 147 1-151 62-219 (272)
33 2z63_A TOLL-like receptor 4, v 99.7 4.2E-17 1.4E-21 125.5 10.8 164 2-166 347-523 (570)
34 2id5_A Lingo-1, leucine rich r 99.7 8E-17 2.7E-21 121.7 12.2 112 39-150 101-213 (477)
35 1wwl_A Monocyte differentiatio 99.7 5.6E-17 1.9E-21 116.6 10.3 124 37-165 168-300 (312)
36 2ell_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 105.8 10.2 136 2-156 24-165 (168)
37 4g8a_A TOLL-like receptor 4; l 99.7 7.6E-17 2.6E-21 125.1 11.6 133 28-163 61-199 (635)
38 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-16 6.5E-21 108.5 12.0 144 5-150 14-166 (220)
39 2v9t_B SLIT homolog 2 protein 99.7 1.5E-16 5.1E-21 109.1 11.4 141 5-148 14-163 (220)
40 3e6j_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 107.6 13.4 117 31-150 52-172 (229)
41 3m19_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 109.0 13.4 147 2-151 35-193 (251)
42 3t6q_A CD180 antigen; protein- 99.7 1.3E-16 4.6E-21 123.6 12.3 162 2-164 278-452 (606)
43 2z81_A CD282 antigen, TOLL-lik 99.7 3.5E-17 1.2E-21 125.5 8.7 129 37-165 45-176 (549)
44 1xku_A Decorin; proteoglycan, 99.7 2E-16 6.8E-21 114.4 12.2 105 61-166 140-268 (330)
45 4ecn_A Leucine-rich repeat pro 99.7 2.9E-17 9.8E-22 131.8 8.5 134 30-166 436-600 (876)
46 3o53_A Protein LRIM1, AGAP0063 99.7 5.1E-17 1.7E-21 117.0 8.7 135 29-166 130-267 (317)
47 2o6s_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 104.3 14.2 115 32-149 41-160 (208)
48 2id5_A Lingo-1, leucine rich r 99.7 2.8E-16 9.5E-21 118.8 12.7 80 86-166 244-325 (477)
49 2z80_A TOLL-like receptor 2, v 99.7 3E-17 1E-21 119.8 7.1 163 1-166 75-306 (353)
50 3e6j_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 108.5 11.4 131 31-166 31-164 (229)
51 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 111.4 13.4 119 38-165 103-221 (308)
52 3t6q_A CD180 antigen; protein- 99.7 3.4E-16 1.2E-20 121.4 13.3 80 84-163 443-526 (606)
53 4ay9_X Follicle-stimulating ho 99.7 4.3E-17 1.5E-21 118.9 7.8 163 1-165 53-230 (350)
54 3oja_B Anopheles plasmodium-re 99.7 3.4E-16 1.2E-20 121.4 13.0 65 38-103 119-184 (597)
55 2v9t_B SLIT homolog 2 protein 99.7 6.4E-16 2.2E-20 105.9 12.5 136 28-166 20-157 (220)
56 3o6n_A APL1; leucine-rich repe 99.7 5.5E-16 1.9E-20 114.4 13.1 64 38-102 113-177 (390)
57 1h6u_A Internalin H; cell adhe 99.7 5.3E-16 1.8E-20 111.3 12.6 153 2-166 41-200 (308)
58 3v47_A TOLL-like receptor 5B a 99.7 2.5E-16 8.7E-21 118.2 11.4 101 66-166 275-376 (455)
59 1wwl_A Monocyte differentiatio 99.7 1.3E-16 4.6E-21 114.6 9.4 162 1-165 94-278 (312)
60 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-16 5.2E-21 115.2 9.5 81 67-148 194-275 (332)
61 4ezg_A Putative uncharacterize 99.7 5E-16 1.7E-20 104.6 11.4 127 1-148 65-192 (197)
62 1h6t_A Internalin B; cell adhe 99.7 7.2E-16 2.5E-20 109.8 12.6 154 2-166 46-205 (291)
63 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.5E-21 110.0 8.9 161 2-166 31-210 (239)
64 2z63_A TOLL-like receptor 4, v 99.7 4.2E-16 1.4E-20 119.9 11.3 133 31-163 40-175 (570)
65 2z62_A TOLL-like receptor 4, v 99.7 5E-16 1.7E-20 109.7 10.7 127 37-165 95-228 (276)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-16 5.3E-21 114.5 7.7 123 41-166 119-242 (317)
67 3oja_A Leucine-rich immune mol 99.7 3.1E-16 1.1E-20 119.0 9.7 134 30-166 131-267 (487)
68 1xeu_A Internalin C; cellular 99.7 1.7E-15 5.7E-20 106.5 12.6 136 2-148 41-183 (263)
69 3o6n_A APL1; leucine-rich repe 99.7 2.2E-15 7.4E-20 111.2 13.4 119 2-122 45-174 (390)
70 4fmz_A Internalin; leucine ric 99.7 2.1E-15 7.1E-20 109.6 13.0 122 38-166 217-338 (347)
71 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-15 5.2E-20 115.8 12.8 129 34-166 340-473 (520)
72 3j0a_A TOLL-like receptor 5; m 99.7 5.2E-16 1.8E-20 124.7 10.5 153 2-155 24-192 (844)
73 4b8c_D Glucose-repressible alc 99.7 1.2E-16 4E-21 126.5 6.5 127 31-160 213-339 (727)
74 3oja_A Leucine-rich immune mol 99.7 2.6E-16 8.9E-21 119.5 7.9 123 41-166 119-242 (487)
75 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-15 7.1E-20 103.3 11.6 135 28-166 20-158 (220)
76 2ft3_A Biglycan; proteoglycan, 99.6 9.3E-16 3.2E-20 111.0 10.2 74 91-166 194-269 (332)
77 2je0_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 100.6 6.7 122 41-166 16-145 (149)
78 1dce_A Protein (RAB geranylger 99.6 9.6E-17 3.3E-21 123.8 4.4 118 43-166 442-565 (567)
79 2xot_A Amphoterin-induced prot 99.6 1.2E-15 4.3E-20 111.7 10.1 154 5-162 21-188 (361)
80 2ast_B S-phase kinase-associat 99.6 1.2E-16 4E-21 115.7 4.5 165 2-166 93-277 (336)
81 2z81_A CD282 antigen, TOLL-lik 99.6 3.9E-15 1.3E-19 114.1 13.2 160 2-166 310-502 (549)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.6E-15 1.6E-19 114.3 13.0 129 34-166 369-502 (562)
83 3oja_B Anopheles plasmodium-re 99.6 6E-15 2E-19 114.5 13.6 110 38-147 71-181 (597)
84 1ziw_A TOLL-like receptor 3; i 99.6 5.3E-15 1.8E-19 116.1 13.3 159 2-164 25-198 (680)
85 1ziw_A TOLL-like receptor 3; i 99.6 6.3E-15 2.2E-19 115.7 13.5 36 110-146 533-569 (680)
86 2o6s_A Variable lymphocyte rec 99.6 6.5E-15 2.2E-19 99.9 11.8 130 31-166 19-153 (208)
87 4fmz_A Internalin; leucine ric 99.6 1.4E-14 4.6E-19 105.3 13.2 71 1-76 65-142 (347)
88 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.1E-20 97.4 7.5 127 2-146 17-149 (149)
89 2ell_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 97.7 9.2 123 40-166 22-152 (168)
90 1h6t_A Internalin B; cell adhe 99.6 6.2E-15 2.1E-19 105.0 10.8 139 1-149 67-212 (291)
91 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-14 4.3E-19 110.8 13.1 148 1-151 323-482 (520)
92 1w8a_A SLIT protein; signaling 99.6 1E-14 3.6E-19 97.8 11.0 107 43-150 30-139 (192)
93 4glp_A Monocyte differentiatio 99.6 2.8E-15 9.4E-20 107.6 8.5 154 2-156 91-269 (310)
94 3j0a_A TOLL-like receptor 5; m 99.6 4.4E-15 1.5E-19 119.3 10.3 154 6-160 8-171 (844)
95 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4.2E-19 112.8 12.3 119 38-165 83-201 (605)
96 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-15 1.6E-19 98.1 8.6 126 2-149 19-152 (176)
97 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-14 6.1E-19 108.6 12.7 148 1-165 41-195 (457)
98 4g8a_A TOLL-like receptor 4; l 99.6 1.1E-14 3.8E-19 113.0 11.4 129 37-166 440-572 (635)
99 2ast_B S-phase kinase-associat 99.6 3.7E-16 1.3E-20 113.0 2.9 163 2-166 70-252 (336)
100 4glp_A Monocyte differentiatio 99.6 3.1E-15 1.1E-19 107.4 6.9 160 1-166 116-299 (310)
101 1m9s_A Internalin B; cell inva 99.6 2.9E-14 9.9E-19 110.7 12.7 141 1-151 64-211 (605)
102 1o6v_A Internalin A; bacterial 99.6 5.4E-14 1.8E-18 106.1 13.8 119 38-165 261-379 (466)
103 4b8c_D Glucose-repressible alc 99.6 9.9E-16 3.4E-20 121.3 4.0 102 30-133 235-336 (727)
104 3bz5_A Internalin-J, INLJ; leu 99.6 5.5E-14 1.9E-18 105.9 12.9 35 110-147 209-243 (457)
105 1o6v_A Internalin A; bacterial 99.6 8.9E-14 3E-18 104.9 13.9 97 62-165 261-357 (466)
106 3cvr_A Invasion plasmid antige 99.6 2.4E-14 8.2E-19 110.4 10.9 30 90-122 160-189 (571)
107 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.9E-14 1.3E-18 109.2 12.0 148 1-151 352-511 (562)
108 1ds9_A Outer arm dynein; leuci 99.6 2.1E-17 7.2E-22 111.5 -5.5 120 30-154 36-157 (198)
109 3cvr_A Invasion plasmid antige 99.6 9.1E-15 3.1E-19 112.7 8.4 143 2-161 100-254 (571)
110 2wfh_A SLIT homolog 2 protein 99.6 4.9E-14 1.7E-18 94.6 10.6 106 42-149 31-138 (193)
111 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.4E-19 96.0 7.2 124 38-166 15-145 (176)
112 2xot_A Amphoterin-induced prot 99.5 4.9E-14 1.7E-18 103.2 10.4 133 29-166 28-168 (361)
113 1w8a_A SLIT protein; signaling 99.5 5.4E-14 1.8E-18 94.3 9.5 118 45-166 11-131 (192)
114 1dce_A Protein (RAB geranylger 99.5 9.9E-14 3.4E-18 107.1 11.4 108 32-144 454-567 (567)
115 1xeu_A Internalin C; cellular 99.5 1.2E-13 4E-18 97.0 10.8 127 29-166 51-177 (263)
116 2o6r_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 89.6 11.2 107 42-151 28-138 (177)
117 1jl5_A Outer protein YOPM; leu 99.5 2.8E-13 9.4E-18 102.1 12.3 105 31-147 143-247 (454)
118 2wfh_A SLIT homolog 2 protein 99.5 2.1E-13 7.1E-18 91.6 10.3 116 45-166 13-131 (193)
119 1jl5_A Outer protein YOPM; leu 99.5 4.1E-13 1.4E-17 101.2 11.6 112 42-166 131-242 (454)
120 3g06_A SSPH2 (leucine-rich rep 99.5 4.3E-13 1.5E-17 104.5 11.9 107 42-164 181-287 (622)
121 2ca6_A RAN GTPase-activating p 99.5 8.2E-15 2.8E-19 108.1 2.0 84 66-149 159-256 (386)
122 4ay9_X Follicle-stimulating ho 99.5 6.9E-14 2.3E-18 102.0 6.5 141 1-146 103-255 (350)
123 2ca6_A RAN GTPase-activating p 99.5 2.4E-14 8.3E-19 105.5 3.8 125 42-166 159-308 (386)
124 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 86.5 9.6 100 45-148 15-116 (174)
125 2o6r_A Variable lymphocyte rec 99.4 2.7E-12 9.2E-17 84.8 11.3 117 44-166 9-129 (177)
126 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-12 3.9E-17 102.1 8.7 107 41-159 200-306 (622)
127 3g39_A Variable lymphocyte rec 99.4 4.8E-12 1.7E-16 83.2 10.3 99 45-147 12-112 (170)
128 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.2E-19 97.4 -4.5 124 38-166 14-145 (198)
129 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 81.4 9.3 82 42-124 30-113 (170)
130 2r9u_A Variable lymphocyte rec 99.3 2E-11 6.8E-16 80.6 10.1 87 42-130 33-121 (174)
131 3goz_A Leucine-rich repeat-con 99.3 4.4E-13 1.5E-17 98.1 2.3 148 2-150 22-209 (362)
132 3sb4_A Hypothetical leucine ri 99.3 3.2E-11 1.1E-15 87.1 10.1 97 65-166 225-326 (329)
133 3goz_A Leucine-rich repeat-con 99.3 1.4E-12 4.9E-17 95.4 2.5 162 3-166 52-258 (362)
134 1z7x_W Ribonuclease inhibitor; 99.3 1.3E-12 4.5E-17 98.1 2.1 149 1-151 226-412 (461)
135 1z7x_W Ribonuclease inhibitor; 99.2 7.1E-13 2.4E-17 99.6 -0.3 125 41-165 255-402 (461)
136 3ogk_B Coronatine-insensitive 99.2 1.9E-11 6.4E-16 94.5 5.3 127 40-166 162-323 (592)
137 2ifg_A High affinity nerve gro 99.2 2.9E-10 9.9E-15 82.6 10.3 93 30-123 20-113 (347)
138 2ifg_A High affinity nerve gro 99.1 1.8E-10 6E-15 83.7 8.5 101 46-149 12-115 (347)
139 2p1m_B Transport inhibitor res 99.1 6.2E-12 2.1E-16 97.2 -0.3 16 1-16 65-80 (594)
140 2p1m_B Transport inhibitor res 99.1 3.1E-11 1.1E-15 93.3 3.0 131 1-147 104-245 (594)
141 3ogk_B Coronatine-insensitive 99.1 6E-11 2.1E-15 91.7 4.0 89 35-124 213-304 (592)
142 3sb4_A Hypothetical leucine ri 99.0 2.4E-09 8.3E-14 77.2 10.7 99 41-144 225-328 (329)
143 3un9_A NLR family member X1; l 98.9 1.9E-10 6.5E-15 84.5 1.3 112 40-151 124-253 (372)
144 3un9_A NLR family member X1; l 98.9 2E-10 6.9E-15 84.4 -0.1 137 2-151 72-225 (372)
145 4fdw_A Leucine rich hypothetic 98.8 3.9E-08 1.3E-12 72.9 11.0 50 1-51 179-235 (401)
146 4fdw_A Leucine rich hypothetic 98.6 3.9E-07 1.3E-11 67.6 10.2 130 31-166 168-328 (401)
147 3e4g_A ATP synthase subunit S, 98.5 5.5E-08 1.9E-12 63.8 3.7 85 67-152 62-154 (176)
148 2ra8_A Uncharacterized protein 98.5 1.9E-07 6.6E-12 68.3 6.2 60 88-148 250-318 (362)
149 3e4g_A ATP synthase subunit S, 98.5 1.3E-07 4.3E-12 62.1 4.3 97 33-129 52-155 (176)
150 2ra8_A Uncharacterized protein 98.5 9.2E-08 3.1E-12 70.0 3.8 114 34-150 164-292 (362)
151 1io0_A Tropomodulin; LRR prote 98.4 1.2E-07 4E-12 63.0 2.7 114 35-149 29-163 (185)
152 1io0_A Tropomodulin; LRR prote 98.4 1.8E-07 6.2E-12 62.0 3.6 112 2-124 36-162 (185)
153 3rw6_A Nuclear RNA export fact 98.1 2.8E-06 9.7E-11 59.5 5.0 41 65-105 169-211 (267)
154 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 7.8E-11 59.9 3.8 77 87-165 167-255 (267)
155 4gt6_A Cell surface protein; l 97.7 0.00026 8.9E-09 52.1 9.2 104 37-147 260-367 (394)
156 4h09_A Hypothetical leucine ri 97.6 0.00056 1.9E-08 50.0 10.0 104 37-146 235-342 (379)
157 4fs7_A Uncharacterized protein 97.6 0.00069 2.4E-08 49.9 9.8 118 37-165 271-392 (394)
158 4gt6_A Cell surface protein; l 97.4 0.0014 4.7E-08 48.2 9.7 102 37-146 283-387 (394)
159 4fs7_A Uncharacterized protein 97.4 0.0025 8.5E-08 46.9 10.9 77 85-166 292-371 (394)
160 4h09_A Hypothetical leucine ri 97.2 0.0046 1.6E-07 45.1 10.3 120 39-166 214-338 (379)
161 3rfe_A Platelet glycoprotein I 96.7 0.0045 1.5E-07 38.3 5.6 53 70-125 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0013 4.5E-08 43.8 3.0 110 38-147 37-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0022 7.5E-08 42.7 3.3 111 2-123 41-167 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0094 3.2E-07 36.9 4.8 53 46-102 12-67 (130)
165 2lz0_A Uncharacterized protein 65.4 17 0.00058 20.9 5.1 37 37-75 15-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.1e-23 Score=151.12 Aligned_cols=161 Identities=25% Similarity=0.452 Sum_probs=83.9
Q ss_pred CCCcEEeccCCcCCcccCchHHhhcc-------CCChhccchhhhcccccceeeecCccccccchhhccC---------C
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISV---------L 65 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~---------~ 65 (169)
++|++|++++|. +..+|+.+..+.. .+.+..+|..+..+++|++|++++|+..+.+|..+.. +
T Consensus 104 ~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 456666666665 4466655444211 2334456666666666666666666555555543322 5
Q ss_pred CCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEecc
Q 030892 66 KYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLS 145 (169)
Q Consensus 66 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~ 145 (169)
++|++|++++| .+..+|..++.+++|++|++++|++..+|..++.+++|+.|++++|+..+.+|..+..+++|+.|+++
T Consensus 183 ~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 55555555553 23344555555555555555555555555555555555555555544444444444444444444444
Q ss_pred CCcCCcccCcccCCccchh
Q 030892 146 GCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 146 ~~~~~~~~p~~~~~l~~L~ 164 (169)
+|+....+|.+++.+++|+
T Consensus 262 ~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCC
T ss_pred CCCchhhcchhhhcCCCCC
Confidence 4444444444444444443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.1e-22 Score=147.35 Aligned_cols=163 Identities=25% Similarity=0.342 Sum_probs=139.7
Q ss_pred CCCCcEEeccCCcCCcccCchHHh--------hccCCChhccchhhh---------cccccceeeecCccccccchhhcc
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQV--------LGDRTDIRELSFAIE---------LLFRLVLLTLNGCKNLERLERTIS 63 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~--------~~~~~~l~~lp~~~~---------~l~~L~~l~l~~~~~~~~~~~~~~ 63 (169)
+++|++|++++|. +..+|+.+.. +..|+.+..+|..+. .+++|++|++++| .++.+|..+.
T Consensus 126 l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~ 203 (328)
T 4fcg_A 126 FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIA 203 (328)
T ss_dssp GTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGG
T ss_pred cCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhc
Confidence 4789999999987 6688887766 233455566776554 4999999999995 5568888898
Q ss_pred CCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCcccccCCCCCceE
Q 030892 64 VLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRML 142 (169)
Q Consensus 64 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L 142 (169)
.+++|++|++++|. +..+|..++.+++|++|++++|++.. +|..++.+++|+.|++++|+..+.+|..+.++++|+.|
T Consensus 204 ~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 99999999999965 55678889999999999999987766 78889999999999999999999999989999999999
Q ss_pred eccCCcCCcccCcccCCccchhhh
Q 030892 143 HLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 143 ~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++++|+..+.+|++++.+++++.+
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred eCCCCCchhhccHHHhhccCceEE
Confidence 999999999999999999988765
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.8e-19 Score=143.40 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=52.0
Q ss_pred CCCCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 89 KDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 89 ~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++++++|++++|+++. +|..++.+++|+.|++++|.....+|..++++++|+.||+++|.....+|+.++.++.|++|
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4556666777766664 66667777777777777755555667767777777777777766666677766666666543
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.1e-19 Score=125.60 Aligned_cols=127 Identities=24% Similarity=0.197 Sum_probs=60.3
Q ss_pred hhhcccccceeeecCccccccc-hhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-ccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERL-ERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~ 114 (169)
.+..+++|++|++++|..++.+ +..+..+++|++|++++|......+..+..+++|++|++++|++..++. .+..+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 4555566666666654434433 3344555555555555543322223445555555555555555555443 2444555
Q ss_pred CCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030892 115 NVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 115 L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 164 (169)
|+.|++++| .++.++ ..+..+++|+.|++++|......|..++.+++|+
T Consensus 155 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 155 LTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 555555552 333333 2344445555555555433333344444444443
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.1e-19 Score=127.31 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhcc-------CCChh-ccchhhhcccccceeeecCccccccchhhccCCC-CCCEE
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIR-ELSFAIELLFRLVLLTLNGCKNLERLERTISVLK-YLSTL 71 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~l~~l 71 (169)
+++|++|++++|...+.+|+.+..+.. .+.+. .+|..+..+++|++|++++|.....+|..+..++ +|++|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 356666666666633355655544222 12222 3455555666666666666444334555454444 55555
Q ss_pred eeCCcccc-----------------------cccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCccccc
Q 030892 72 KLSGLLKF-----------------------REFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKS 128 (169)
Q Consensus 72 ~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~ 128 (169)
++++|... ...|..+..+++|++|++++|++...+..+..+++|+.|++++|.....
T Consensus 180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc
Confidence 55554332 2334455556666666666666655444455666677777766544446
Q ss_pred CcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 129 LPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+|..+..+++|+.|++++|.....+|+. +.++.|+.+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 6666667777777777776555556654 556655544
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=7e-19 Score=139.99 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=109.3
Q ss_pred CCCcEEeccCCcCCcccCchHHhhcc-------CCChh-ccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIR-ELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
++|++|++++|...+.+|..+..+.. .+.+. .+|..+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 34555555555433344444433111 12222 45666777777777777776655566776777777777777
Q ss_pred CCcccccccccccCCCCCCcEEEecCcccCC-cccc--------------------------------------------
Q 030892 74 SGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPAS-------------------------------------------- 108 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~-------------------------------------------- 108 (169)
++|.....+|..++.+++|++|++++|++.. +|..
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 7766555677777777778888887776653 4432
Q ss_pred --------------------------cccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccc
Q 030892 109 --------------------------IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVES 162 (169)
Q Consensus 109 --------------------------~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 162 (169)
++.+++|+.+++++|+....+|..++++++|+.|++++|.....+|+.++.++.
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 223456777888876666678888888888888888887777788888888888
Q ss_pred hhhh
Q 030892 163 LEVR 166 (169)
Q Consensus 163 L~~l 166 (169)
|++|
T Consensus 682 L~~L 685 (768)
T 3rgz_A 682 LNIL 685 (768)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7765
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=3.2e-19 Score=128.37 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=115.6
Q ss_pred CCCCcEEeccC-CcCCcccCchHHhhccC-------CChh-ccchhhhcccccceeeecCccccccchhhccCCCCCCEE
Q 030892 1 MKSLKTLVLSG-CLKLKKFPDIVQVLGDR-------TDIR-ELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTL 71 (169)
Q Consensus 1 l~~L~~l~ls~-~~~l~~~p~~~~~~~~~-------~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 71 (169)
+++|++|++++ |...+.+|+.+..+... +.+. .+|..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 57899999996 66555788877663332 2333 578889999999999999976666888889999999999
Q ss_pred eeCCcccccccccccCCCC-CCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCccc-----------------
Q 030892 72 KLSGLLKFREFPEKTSSKD-QLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPST----------------- 132 (169)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~----------------- 132 (169)
++++|.....+|..+..++ +|++|++++|++.. .|..+..+. |+.|++++|......|..
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 9999765557888888887 88999998887774 555554444 555555553322233333
Q ss_pred ------ccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 133 ------TNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 133 ------~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+..+++|++|++++|.....+|.+++.++.|++|
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 4455666666666655544666666666666543
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=3.2e-18 Score=121.45 Aligned_cols=164 Identities=21% Similarity=0.214 Sum_probs=119.3
Q ss_pred CCCCcEEeccCCcCCccc-CchHHh--------hccCCChhcc-chhhhcccccceeeecCccccccchhhccCCCCCCE
Q 030892 1 MKSLKTLVLSGCLKLKKF-PDIVQV--------LGDRTDIREL-SFAIELLFRLVLLTLNGCKNLERLERTISVLKYLST 70 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~-p~~~~~--------~~~~~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 70 (169)
+++|++|++++|. ++.+ |..+.. +..+..++.+ |..+..+++|++|++++|......+..+..+++|++
T Consensus 55 ~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 3567788888775 4443 444433 2223236666 447888999999999996555555666788999999
Q ss_pred EeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCc
Q 030892 71 LKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 71 l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 148 (169)
|++++|. +..++ ..++.+++|++|++++|++..++. .+..+++|+.|++++|......|..+.++++|+.|++++|.
T Consensus 134 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 134 LYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 9999965 44454 568889999999999999988775 47888999999999865545557788889999999999965
Q ss_pred CCcccCcccCCccchhhh
Q 030892 149 KLKNVPETLGKVESLEVR 166 (169)
Q Consensus 149 ~~~~~p~~~~~l~~L~~l 166 (169)
.....++.++.+++|+++
T Consensus 213 l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYL 230 (285)
T ss_dssp CSCCCHHHHTTCTTCCEE
T ss_pred CCcCCHHHcccCcccCEE
Confidence 544333557888777654
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.1e-18 Score=119.24 Aligned_cols=160 Identities=25% Similarity=0.298 Sum_probs=101.8
Q ss_pred CCcEEeccCCcCCcccCc-hHHhhc-------cCCChhccch-hhhcccccceeeecCccccccch-hhccCCCCCCEEe
Q 030892 3 SLKTLVLSGCLKLKKFPD-IVQVLG-------DRTDIRELSF-AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLK 72 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~p~-~~~~~~-------~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~ 72 (169)
+|++|++++|. ++.+|. .+..+. ..+.++.+|. .|..+++|++|++++|. ++.++ ..+..+++|++|+
T Consensus 38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 57777777766 555543 222211 1234455655 34667788888888753 44443 4456677888888
Q ss_pred eCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCC
Q 030892 73 LSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~ 150 (169)
+++|......+..+..+++|++|++++|++..+|.. +..+++|+.|++++| .++.++ ..+..+++|++|++++|. +
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l 193 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-L 193 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-C
Confidence 887543332335567788888888888888776654 677788888888874 455554 457778888888888854 4
Q ss_pred cccCc-ccCCccchhhh
Q 030892 151 KNVPE-TLGKVESLEVR 166 (169)
Q Consensus 151 ~~~p~-~~~~l~~L~~l 166 (169)
+.+|. .+..+++|+.|
T Consensus 194 ~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKML 210 (270)
T ss_dssp SCCCTTTTTTCTTCCEE
T ss_pred CcCCHHHhccccCCCEE
Confidence 44553 46666666554
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=4.4e-18 Score=118.78 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=104.5
Q ss_pred CcEEeccCCcCCcccCchHHh-----hccCCChhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcc
Q 030892 4 LKTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 4 L~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 77 (169)
.++++++++. ++.+|..+.. .-..+.+..++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 16 ~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 4567777654 6666654332 112334445544 57778888888888854444444556778888888888854
Q ss_pred cccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCcc-cccCCCCCceEeccCCcCCcccC
Q 030892 78 KFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLPS-TTNGLRSLRMLHLSGCSKLKNVP 154 (169)
Q Consensus 78 ~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p 154 (169)
+..++ ..+..+++|++|++++|+++.++.. +..+++|+.|++++| .++.++. .+..+++|++|++++|......+
T Consensus 95 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 95 -LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 33444 5667788888888888888876654 567788888888874 5555554 57778888888888854443333
Q ss_pred cccCCccchhhh
Q 030892 155 ETLGKVESLEVR 166 (169)
Q Consensus 155 ~~~~~l~~L~~l 166 (169)
..+..+++|+++
T Consensus 173 ~~~~~l~~L~~L 184 (251)
T 3m19_A 173 GAFDRLGKLQTI 184 (251)
T ss_dssp TTTTTCTTCCEE
T ss_pred HHHhCCCCCCEE
Confidence 466667666654
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=123.80 Aligned_cols=128 Identities=22% Similarity=0.219 Sum_probs=81.7
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccc-ccccccCCCCCCcEEEecCcccCCc-ccccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFR-EFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~ 114 (169)
.+..+++|++|++++|......+..+..+++|++|++++|.... ..|..+..+++|++|++++|++.++ |..+..+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 45566666666666654444445555666777777777754333 3566677777777777777777765 455667777
Q ss_pred CCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCcc-chhh
Q 030892 115 NVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVE-SLEV 165 (169)
Q Consensus 115 L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~ 165 (169)
|+.|++++| .++.++ ..+..+++|+.|++++|......|..+..++ +|++
T Consensus 201 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 201 LQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred CCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 777777774 344443 4566777777888877666555666666653 5544
No 12
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.1e-18 Score=115.48 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRE 81 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 81 (169)
++|++|++++|. + +++| .+..+++|++|++++| .++.++ .+..+++|++|++++|.....
T Consensus 44 ~~L~~L~l~~n~-i----------------~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~ 103 (197)
T 4ezg_A 44 NSLTYITLANIN-V----------------TDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSD 103 (197)
T ss_dssp HTCCEEEEESSC-C----------------SCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGG
T ss_pred CCccEEeccCCC-c----------------cChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcc
Confidence 456777777665 2 3344 4666778888888886 555444 467788888998888654444
Q ss_pred cccccCCCCCCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCc
Q 030892 82 FPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKV 160 (169)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 160 (169)
.+..+..+++|++|++++|++.. .+..++.+++|+.|++++|..++.++ .+.++++|+.|++++|. +..++ .+..+
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l 180 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDF 180 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGC
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccC
Confidence 56778888888999998888876 56677888889999988866577776 47788888999988854 44555 56667
Q ss_pred cchhhh
Q 030892 161 ESLEVR 166 (169)
Q Consensus 161 ~~L~~l 166 (169)
++|++|
T Consensus 181 ~~L~~L 186 (197)
T 4ezg_A 181 PKLNQL 186 (197)
T ss_dssp SSCCEE
T ss_pred CCCCEE
Confidence 766654
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.1e-18 Score=126.83 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred hhccch-hhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-
Q 030892 31 IRELSF-AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP- 106 (169)
Q Consensus 31 l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~- 106 (169)
++.+|. .+..+++|++|++++|. ++.++ ..+..+++|+.|++++|+.+..++ ..+.++++|++|++++|+++.+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 344443 34455555555555532 22222 234444555555555444444333 23444444444444444444443
Q ss_pred ----------------------cccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030892 107 ----------------------ASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 107 ----------------------~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 164 (169)
..+..+++|+.|++++|......+..+.++++|+.|++++|......+..+..++.|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 3344444555555544322222234455556666666666433222223345555554
Q ss_pred h
Q 030892 165 V 165 (169)
Q Consensus 165 ~ 165 (169)
.
T Consensus 283 ~ 283 (440)
T 3zyj_A 283 R 283 (440)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.4e-17 Score=117.47 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCCcEEeccCCcCCcccCchHHh------hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSG 75 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 75 (169)
++|+.|++++|. ++.++..... .-..+.+..++ .+..+++|++|++++|......+..+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 456666776655 4444431111 00112233333 456667777777777533333333456667777777777
Q ss_pred cccccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcc
Q 030892 76 LLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKN 152 (169)
Q Consensus 76 ~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~ 152 (169)
|.. ..++ ..+..+++|++|++++|++..++.. +..+++|+.|++++| .++.++ ..+..+++|++|++++|.....
T Consensus 119 n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 119 NQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcC-CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 543 3333 4456667777777777777665543 456677777777764 344443 3456667777777777544433
Q ss_pred cCcccCCccchhhh
Q 030892 153 VPETLGKVESLEVR 166 (169)
Q Consensus 153 ~p~~~~~l~~L~~l 166 (169)
.+..++.+++|++|
T Consensus 197 ~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 197 PDGVFDRLTSLQYI 210 (272)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred CHHHHhCCcCCCEE
Confidence 33445666655543
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=4.4e-18 Score=121.83 Aligned_cols=131 Identities=22% Similarity=0.229 Sum_probs=69.4
Q ss_pred chhhhcccccceeeecCccccccch--hhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC--cccccc
Q 030892 35 SFAIELLFRLVLLTLNGCKNLERLE--RTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG--LPASIE 110 (169)
Q Consensus 35 p~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~ 110 (169)
|..+..+++|++|++++| .++.++ ..+..+++|++|++++|......+..+..+++|++|++++|++.+ +|..+.
T Consensus 94 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred hhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 333444444444444442 222222 234455566666666644333334455666666666666666654 455566
Q ss_pred cCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 111 LLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
.+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|++|
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 66667777776643333335556666777777777654433333345555555543
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=9e-18 Score=126.30 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=36.2
Q ss_pred CCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccC-cccCCccchhh
Q 030892 88 SKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESLEV 165 (169)
Q Consensus 88 ~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 165 (169)
.+++|++|++++|++..+ |..+.++++|+.|++++|......+..+.++++|+.|++++|.. ..+| ..+..+++|+.
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC-CccChHHhccccCCCE
Confidence 333444444444444442 33444555555555555332223344455566666666666433 3333 33455555544
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=4e-18 Score=132.21 Aligned_cols=128 Identities=21% Similarity=0.142 Sum_probs=80.2
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccc-cccccCCCCCCcEEEecCcccCCc-ccccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRE-FPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~ 114 (169)
.+..+++|+++++++|......|..+..+++|++|++++|..... +|..++.+++|++|++++|++.+. |..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 455566666666666554444555566666777777776544332 456666777777777777777664 445667777
Q ss_pred CCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCcc-chhh
Q 030892 115 NVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVE-SLEV 165 (169)
Q Consensus 115 L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~ 165 (169)
|+.|++++|+.....|..+.++++|+.|++++|. ++.+|..+..++ +|++
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAF 549 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCE
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcE
Confidence 7777777754444446667777777777777744 456666666554 3544
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.3e-18 Score=134.49 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=114.0
Q ss_pred CChhccchhhhcccccceeeecCcccccc-----------------chhhcc--CCCCCCEEeeCCcccccccccccCCC
Q 030892 29 TDIRELSFAIELLFRLVLLTLNGCKNLER-----------------LERTIS--VLKYLSTLKLSGLLKFREFPEKTSSK 89 (169)
Q Consensus 29 ~~l~~lp~~~~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~ 89 (169)
+.++.+|..+.++++|++|++++|..... +|..+. .+++|++|++++|.....+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 35666888999999999999999764443 888888 89999999999988788889999999
Q ss_pred CCCcEEEecCcc-cCC--cccccccC------CCCCeEecCCCcccccCcc--cccCCCCCceEeccCCcCCcccCcccC
Q 030892 90 DQLLEIHLEGTA-IRG--LPASIELL------SGNVLLNLKDCKNLKSLPS--TTNGLRSLRMLHLSGCSKLKNVPETLG 158 (169)
Q Consensus 90 ~~L~~L~l~~~~-l~~--~~~~~~~l------~~L~~l~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~ 158 (169)
++|++|++++|+ ++. +|..++.+ ++|+.|++++| .++.+|. .++.+++|++|++++|.....+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 875 88877776 89999999985 5558888 88999999999999966554788 777
Q ss_pred Cccchhhh
Q 030892 159 KVESLEVR 166 (169)
Q Consensus 159 ~l~~L~~l 166 (169)
.+++|++|
T Consensus 351 ~l~~L~~L 358 (636)
T 4eco_A 351 SEIKLASL 358 (636)
T ss_dssp EEEEESEE
T ss_pred CCCCCCEE
Confidence 77777665
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2e-17 Score=117.90 Aligned_cols=159 Identities=23% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCCcEEeccCCcCCcccCchHHh-----hccCCChhccc-hhhhcccccceeeecCcc---------------------c
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELS-FAIELLFRLVLLTLNGCK---------------------N 54 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp-~~~~~l~~L~~l~l~~~~---------------------~ 54 (169)
+++++++++++. ++.+|..+.. .-..+.+..++ ..+..+++|++|++++|. .
T Consensus 10 ~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC
T ss_pred CCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCc
Confidence 456666666554 5555543322 01122333333 245555556666655532 2
Q ss_pred cccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCcc-
Q 030892 55 LERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLPS- 131 (169)
Q Consensus 55 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~~- 131 (169)
++.+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|++..+|.. +..+++|+.|++++ +.++.+|.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~ 166 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAG 166 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTT
T ss_pred CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHH
Confidence 23333333444455555555532 22232 3444555555555555555554432 34455555555554 23444442
Q ss_pred cccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030892 132 TTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 164 (169)
.+..+++|+.|++++ +.+..+|..+.....|+
T Consensus 167 ~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 167 LLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCS
T ss_pred HhcCcCCCCEEECCC-CcCCccChhhcccccCC
Confidence 334455555555555 33344555444444443
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=124.39 Aligned_cols=110 Identities=27% Similarity=0.281 Sum_probs=83.1
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc-cccccCCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGN 115 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L 115 (169)
.|..+++|++|++++| .++.+|. +..+++|+.|++++|......+..+..+++|+.|++++|++..++ ..+..+++|
T Consensus 180 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred hhhcccccCeecCCCC-cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 4555666666666663 4444543 556778888888886544444678899999999999999999864 568899999
Q ss_pred CeEecCCCcccccCc-ccccCCCCCceEeccCCcC
Q 030892 116 VLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 116 ~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~ 149 (169)
+.|++++| .++.++ ..+..+++|+.|++++|+.
T Consensus 258 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 99999995 666665 5678899999999999764
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3e-17 Score=123.45 Aligned_cols=163 Identities=19% Similarity=0.169 Sum_probs=125.9
Q ss_pred CCCCcEEeccCCcCCcccC-chHHhhc-------cCCChhccch-hhhcccccceeeecCccccccch-hhccCCCCCCE
Q 030892 1 MKSLKTLVLSGCLKLKKFP-DIVQVLG-------DRTDIRELSF-AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLST 70 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p-~~~~~~~-------~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~ 70 (169)
+++|++|++++|. +..++ ..+..+. ..+.++.+|. .+..+++|++|++++|. ++.++ ..+..+++|+.
T Consensus 98 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 98 LHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMR 175 (452)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccE
Confidence 5789999999987 55544 4443311 2345667776 57789999999999964 44554 46788999999
Q ss_pred EeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcC
Q 030892 71 LKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 71 l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 149 (169)
|++++|+.+..++ ..+..+++|++|++++|++..+|. +..+++|+.|++++|......|..+.++++|+.|++++|..
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 9999988888776 468889999999999999988864 67889999999999655555577899999999999999766
Q ss_pred CcccCcccCCccchhhh
Q 030892 150 LKNVPETLGKVESLEVR 166 (169)
Q Consensus 150 ~~~~p~~~~~l~~L~~l 166 (169)
....+..+..+++|+.|
T Consensus 255 ~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 255 SLIERNAFDGLASLVEL 271 (452)
T ss_dssp CEECTTTTTTCTTCCEE
T ss_pred ceECHHHhcCCCCCCEE
Confidence 55566778888877765
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=9.8e-18 Score=130.00 Aligned_cols=165 Identities=18% Similarity=0.067 Sum_probs=104.3
Q ss_pred CCCCcEEeccCCcCCccc---CchHHhhc-------cCCChhccchhhhcccccceeeecCccccccch-hhccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKF---PDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~---p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~ 69 (169)
+++|++|++++|. +..+ |..+..+. ..+.+..+|..+..+++|+.+++++|......+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 3567777777765 3333 44333311 122344556666677777777777754444444 3556677777
Q ss_pred EEeeCCcccccccccccCCCCCCcEEEecCcccCC--cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 70 TLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG--LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 70 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
+|++++|......|..++.+++|++|++++|++.+ +|..++.+++|+.|++++|......|..+.++++|+.|++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 77777765544456667777777777777777765 4666677777777777775444444566777777777777776
Q ss_pred cCCcccCcccCCccchhhh
Q 030892 148 SKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 148 ~~~~~~p~~~~~l~~L~~l 166 (169)
......|..++.+++|++|
T Consensus 508 ~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEE
T ss_pred cCCCcCHHHccCCCcCCEE
Confidence 5555556667776666554
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.5e-17 Score=115.57 Aligned_cols=119 Identities=23% Similarity=0.279 Sum_probs=99.3
Q ss_pred CChhccchhhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc
Q 030892 29 TDIRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP 106 (169)
Q Consensus 29 ~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~ 106 (169)
+.++.+|..+..+++|++|++++| .++.++ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++|+++.+|
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccC
Confidence 455677877888999999999996 455554 668889999999999965 45555 56788999999999999999988
Q ss_pred cc-cccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCC
Q 030892 107 AS-IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 107 ~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 150 (169)
.. +..+++|+.|++++ +.++.+|..+....+|+.+++++|+..
T Consensus 165 ~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCcc
Confidence 65 57899999999998 678899988888899999999997643
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=5.7e-17 Score=117.24 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred hhhcccccceeeecCccccc--cchhhccCCCCCCEEeeCCccccccc----------------------ccccCCCCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLE--RLERTISVLKYLSTLKLSGLLKFREF----------------------PEKTSSKDQL 92 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~----------------------~~~~~~~~~L 92 (169)
.+..+++|+.+++++|.... ..+..+..+++|+++++++|. +..+ +..+..+++|
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 35556666666666543321 223334445555555544432 2222 3344455555
Q ss_pred cEEEecCcccCCcc-cccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 93 LEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 93 ~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
++|++++|++..++ ..+..+++|+.|++++ +.+..+|..+..+++|+.|++++|
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC
Confidence 55555555555433 2344555555555555 244455555555555555555553
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=7.7e-17 Score=113.60 Aligned_cols=160 Identities=24% Similarity=0.288 Sum_probs=122.0
Q ss_pred CCcEEeccCCcCCcccCchHHh----h-ccCCChhccch-hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCC
Q 030892 3 SLKTLVLSGCLKLKKFPDIVQV----L-GDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSG 75 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~p~~~~~----~-~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~ 75 (169)
..+.++++++. ++.+|..+.. + -..+.++.++. .+..+++|++|++++| .++.++. .+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 46789999776 7777764432 1 12445677776 7889999999999995 4555654 457799999999999
Q ss_pred cccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEecCCCcccccCcc-cccCCCCCceEeccCCcCCcc
Q 030892 76 LLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCKNLKSLPS-TTNGLRSLRMLHLSGCSKLKN 152 (169)
Q Consensus 76 ~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~ 152 (169)
|. +..++ ..+..+++|++|++++|++..++. .+..+++|+.|++++| .++.++. .+..+++|+.|++++|.....
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEe
Confidence 65 55555 567889999999999999998764 5789999999999995 6666664 578999999999999654443
Q ss_pred cCcccCCccchhhh
Q 030892 153 VPETLGKVESLEVR 166 (169)
Q Consensus 153 ~p~~~~~l~~L~~l 166 (169)
.+..+..+++|++|
T Consensus 173 ~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 173 PEGAFDKLTELKTL 186 (270)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred ChhHhccCCCcCEE
Confidence 33457778877764
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=6.8e-18 Score=131.87 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=109.7
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc--------cCCChh--ccchhhhcc------cccceeeecCccccccchh--hc
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG--------DRTDIR--ELSFAIELL------FRLVLLTLNGCKNLERLER--TI 62 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~--------~~~~l~--~lp~~~~~l------~~L~~l~l~~~~~~~~~~~--~~ 62 (169)
+++|++|++++|...+.+|+.+..+. .+..++ .+|..+..+ ++|++|++++|.. +.+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhh
Confidence 46788899998887777887766522 222144 477777665 8888888888544 47777 77
Q ss_pred cCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCC-CCeEecCCCcccccCcccccCCC--CC
Q 030892 63 SVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSG-NVLLNLKDCKNLKSLPSTTNGLR--SL 139 (169)
Q Consensus 63 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~-L~~l~l~~~~~l~~~~~~~~~l~--~L 139 (169)
..+++|++|++++|.....+| .++.+++|++|++++|++..+|..++.+++ |+.|++++| .++.+|..+..++ +|
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCcc
Confidence 888888888888865443677 777777888888888877777777777777 888888874 4557776655543 67
Q ss_pred ceEeccCCcCCcccCcccC
Q 030892 140 RMLHLSGCSKLKNVPETLG 158 (169)
Q Consensus 140 ~~L~l~~~~~~~~~p~~~~ 158 (169)
+.|++++|.....+|..+.
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EEEECCSSCTTTTTTCSSC
T ss_pred CEEECcCCcCCCcchhhhc
Confidence 7777777666555665555
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.2e-17 Score=115.62 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=63.1
Q ss_pred CChhccch-hhhcccccceeeecCccccccchhhccCCCCCC---EEeeCCcccccccc-cccCCCCCCc-EEEecCccc
Q 030892 29 TDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLS---TLKLSGLLKFREFP-EKTSSKDQLL-EIHLEGTAI 102 (169)
Q Consensus 29 ~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~---~l~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~l 102 (169)
+.++.++. .|..+++|+++++++| .++.+|. +..+++++ ++++++|..+..++ ..+..+++|+ ++++++|++
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 33444432 3444445555555442 2333443 33444444 55555542344443 3455666666 666666666
Q ss_pred CCcccccccCCCCCeEecCCCcccccCc-ccccCC-CCCceEeccCCcCCcccCc
Q 030892 103 RGLPASIELLSGNVLLNLKDCKNLKSLP-STTNGL-RSLRMLHLSGCSKLKNVPE 155 (169)
Q Consensus 103 ~~~~~~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l-~~L~~L~l~~~~~~~~~p~ 155 (169)
..+|......++|+.+++++|..++.++ ..+.++ ++|+.|++++| .++.+|.
T Consensus 169 ~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~ 222 (239)
T 2xwt_C 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS 222 (239)
T ss_dssp CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC
T ss_pred cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh
Confidence 6655443333566666666643355543 345666 66777777663 3344553
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=9.6e-18 Score=134.50 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=103.1
Q ss_pred CCCCcEEeccCCcCCcc------------------cCchHH--h--------hccCCChhccchhhhcccccceeeecCc
Q 030892 1 MKSLKTLVLSGCLKLKK------------------FPDIVQ--V--------LGDRTDIRELSFAIELLFRLVLLTLNGC 52 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~------------------~p~~~~--~--------~~~~~~l~~lp~~~~~l~~L~~l~l~~~ 52 (169)
+++|++|++++|. +.. +|+.+. . +..+.-...+|..+.++++|+.|++++|
T Consensus 447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 4678888888887 444 676654 3 2233334566777777888888888876
Q ss_pred c-ccc-cchhhccC-------CCCCCEEeeCCccccccccc--ccCCCCCCcEEEecCcccCCcccccccCCCCCeEecC
Q 030892 53 K-NLE-RLERTISV-------LKYLSTLKLSGLLKFREFPE--KTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 121 (169)
Q Consensus 53 ~-~~~-~~~~~~~~-------~~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~ 121 (169)
. ... .+|..+.. +++|+.|++++|.. ..+|. .++.+++|+.|++++|++..+| .++.+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 5 333 45654433 34777888777543 36776 6777777788888777777777 67777777777777
Q ss_pred CCcccccCcccccCCCC-CceEeccCCcCCcccCcccCCc
Q 030892 122 DCKNLKSLPSTTNGLRS-LRMLHLSGCSKLKNVPETLGKV 160 (169)
Q Consensus 122 ~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~p~~~~~l 160 (169)
+| .+..+|..+..+++ |+.|++++|. +..+|..+..+
T Consensus 604 ~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~ 641 (876)
T 4ecn_A 604 YN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAK 641 (876)
T ss_dssp SS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTT
T ss_pred CC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhcc
Confidence 74 44577766777777 7777777754 44666655543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=4.1e-17 Score=122.52 Aligned_cols=123 Identities=20% Similarity=0.133 Sum_probs=64.5
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEec
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNL 120 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l 120 (169)
++|+.+++++|......+..+..+++|++|++++|......+..+..+++|++|++++|++.++ +..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4566666666544444455555566666666666443333344555566666666666665553 344555566666666
Q ss_pred CCCcccccCcccccCCCCCceEeccCCcCCcccC-cccCCccchhh
Q 030892 121 KDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESLEV 165 (169)
Q Consensus 121 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 165 (169)
++|......|..+.++++|++|++++|.. +.+| ..++.+++|++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQK 399 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCE
T ss_pred CCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccE
Confidence 65433233345555566666666666333 3333 23455555544
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=121.26 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=76.3
Q ss_pred hhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccccccc-ccCCCCCCcEEEecCcccCCccc-
Q 030892 31 IRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPE-KTSSKDQLLEIHLEGTAIRGLPA- 107 (169)
Q Consensus 31 l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~- 107 (169)
++.++. .+..+++|++|++++|......+..+..+++|++|++++|. +..++. .++.+++|++|++++|++..+|.
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence 344444 45566666666666643333334445666666666666643 334443 35666666666666666666554
Q ss_pred -ccccCCCCCeEecCCCcccccC-cccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 108 -SIELLSGNVLLNLKDCKNLKSL-PSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 108 -~~~~l~~L~~l~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
.+..+++|+.|++++|+.++.+ +..+.++++|++|++++|......|..++.+++|++
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 4556666666666665444444 345566666666666665444444555655555544
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=6.9e-17 Score=114.09 Aligned_cols=86 Identities=21% Similarity=0.086 Sum_probs=36.7
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC--cccccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG--LPASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~l~~ 114 (169)
.+..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|++|++++|++.. +|..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 34444444555544432222222334444444555444432222112234444445555555444443 3444444445
Q ss_pred CCeEecCC
Q 030892 115 NVLLNLKD 122 (169)
Q Consensus 115 L~~l~l~~ 122 (169)
|+.|++++
T Consensus 151 L~~L~Ls~ 158 (276)
T 2z62_A 151 LEHLDLSS 158 (276)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 55555544
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2e-16 Score=111.59 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=111.6
Q ss_pred CCCCcEEeccCCcCCcccCchHHhh-------ccCCChhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEe
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVL-------GDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLK 72 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~-------~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 72 (169)
+++|++|++++|. +..++. +..+ -..+.++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5789999999987 555542 2221 11345566665 578899999999999654444445578899999999
Q ss_pred eCCcccccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcC
Q 030892 73 LSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 73 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~ 149 (169)
+++|. +..++ ..+..+++|++|++++|+++.++.. ++.+++|+.|++++|. ++.++ ..+..+++|+.|++++|+.
T Consensus 140 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 140 LAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCc
Confidence 99975 44554 5578899999999999999987654 6889999999999954 55554 5678999999999999765
Q ss_pred Cc
Q 030892 150 LK 151 (169)
Q Consensus 150 ~~ 151 (169)
..
T Consensus 218 ~~ 219 (272)
T 3rfs_A 218 DC 219 (272)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=125.48 Aligned_cols=164 Identities=20% Similarity=0.131 Sum_probs=101.1
Q ss_pred CCCcEEeccCCcCCccc---CchHHhhcc-------CCChhccchhhhcccccceeeecCccccccch-hhccCCCCCCE
Q 030892 2 KSLKTLVLSGCLKLKKF---PDIVQVLGD-------RTDIRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLST 70 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~---p~~~~~~~~-------~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~ 70 (169)
++|++|++++|. +... |..+..+.. .+.+..++..+..+++|+.+++++|......+ ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 566667776665 3332 333322111 22333444446666777777777754333333 24566777777
Q ss_pred EeeCCcccccccccccCCCCCCcEEEecCcccC--CcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCc
Q 030892 71 LKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIR--GLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 71 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 148 (169)
|++++|......+..+..+++|++|++++|++. .+|..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 777776554445666777777888888887776 267777777888888887754444446677777888888888765
Q ss_pred CCcccCcccCCccchhhh
Q 030892 149 KLKNVPETLGKVESLEVR 166 (169)
Q Consensus 149 ~~~~~p~~~~~l~~L~~l 166 (169)
.....|..+..+++|+++
T Consensus 506 l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCHHHhhcccCCcEE
Confidence 444444556667666654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=8e-17 Score=121.74 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=45.9
Q ss_pred hcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-ccccCCCCCe
Q 030892 39 ELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVL 117 (169)
Q Consensus 39 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~ 117 (169)
..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|++..++. .+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 344444444444433222223334444444444444432222223344444445555555554444332 2344444444
Q ss_pred EecCCCcccccCcccccCCCCCceEeccCCcCC
Q 030892 118 LNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 118 l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 150 (169)
|++++|......+..+..+++|+.|++++|+..
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 444442221212223444444444444444333
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=5.6e-17 Score=116.59 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=54.3
Q ss_pred hhhcccccceeeecCcccccc--chhhc--cCCCCCCEEeeCCccccc--ccc-cccCCCCCCcEEEecCcccCCcc--c
Q 030892 37 AIELLFRLVLLTLNGCKNLER--LERTI--SVLKYLSTLKLSGLLKFR--EFP-EKTSSKDQLLEIHLEGTAIRGLP--A 107 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~--~~~~~--~~~~~l~~l~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~l~~~~--~ 107 (169)
.+..+++|++|++++|...+. .+..+ ..+++|++|++++|.... .++ ..+..+++|++|++++|++...+ .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 344445555555554432222 12222 344455555555532210 111 12234445555555555554422 2
Q ss_pred ccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 108 SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 108 ~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
.+..+++|+.|++++ +.++.+|..+. ++|+.|++++| .++.+|. +..++.|++
T Consensus 248 ~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGN 300 (312)
T ss_dssp CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEE
T ss_pred hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCE
Confidence 233345555555555 23445554433 55555555553 3333444 555555544
No 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=8.2e-17 Score=105.79 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=93.6
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRE 81 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 81 (169)
++|++|++++|. +. . ..+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....
T Consensus 24 ~~L~~L~l~~n~-l~----------~----~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 24 AAVRELVLDNCK-SN----------D----GKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp TSCSEEECCSCB-CB----------T----TBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSC
T ss_pred ccCCEEECCCCC-CC----------h----hhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchH
Confidence 467777777776 22 0 1344445667788888888854 4444 5567788888888888654443
Q ss_pred cccccCCCCCCcEEEecCcccCCcc--cccccCCCCCeEecCCCcccccCcc----cccCCCCCceEeccCCcCCcccCc
Q 030892 82 FPEKTSSKDQLLEIHLEGTAIRGLP--ASIELLSGNVLLNLKDCKNLKSLPS----TTNGLRSLRMLHLSGCSKLKNVPE 155 (169)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~l~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~~~~~p~ 155 (169)
+|..+..+++|++|++++|+++.++ ..+..+++|+.|++++| .+..+|. .+..+++|+.|++++| ....+|+
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 5666666788888888888888765 56778888888888874 5555554 6777888888888885 3445554
Q ss_pred c
Q 030892 156 T 156 (169)
Q Consensus 156 ~ 156 (169)
+
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=7.6e-17 Score=125.12 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=97.8
Q ss_pred CCChhccch-hhhcccccceeeecCccccccc-hhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCC
Q 030892 28 RTDIRELSF-AIELLFRLVLLTLNGCKNLERL-ERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRG 104 (169)
Q Consensus 28 ~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 104 (169)
.+.|+.+|+ .|.++++|++|++++| .++.+ +..|..+++|++|++++|. ++.+| ..+.++++|++|++++|+++.
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 345666665 6888889999999985 45555 4467888899999999864 55565 567888999999999998888
Q ss_pred ccc-ccccCCCCCeEecCCCcccc--cCcccccCCCCCceEeccCCcCCcccCcccCCccch
Q 030892 105 LPA-SIELLSGNVLLNLKDCKNLK--SLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESL 163 (169)
Q Consensus 105 ~~~-~~~~l~~L~~l~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 163 (169)
++. .++++++|+.|++++| .++ ..|..+..+++|++|++++|......+..++.+..+
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp STTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 765 4788899999999885 443 346777888899999999865544444555544433
No 38
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=108.53 Aligned_cols=144 Identities=19% Similarity=0.125 Sum_probs=104.7
Q ss_pred cEEeccCCcCCcccCchHHh-----hccCCChhccch--hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcc
Q 030892 5 KTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELSF--AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 5 ~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 77 (169)
++++++++. ++.+|..+.. .-..+.++.++. .|..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 578888766 7777764433 112445566632 47788899999999854333334467888999999999965
Q ss_pred cccccccccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccC-cccccCCCCCceEeccCCcCC
Q 030892 78 KFREFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSL-PSTTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 78 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~ 150 (169)
.....+..+..+++|++|++++|++..+ |..+..+++|+.|++++| .++.+ |..+..+++|+.|++++|+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4433345688889999999999999886 567888899999999985 45444 678888999999999987643
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.5e-16 Score=109.06 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=81.1
Q ss_pred cEEeccCCcCCcccCchHHh-----hccCCChhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccc
Q 030892 5 KTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLK 78 (169)
Q Consensus 5 ~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 78 (169)
+.++++++. ++.+|..+.. .-..+.++.++. .|..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~- 91 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK- 91 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-
Confidence 345555544 5555543221 011233444544 56666677777777654333335566667777777777743
Q ss_pred ccccc-cccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCc
Q 030892 79 FREFP-EKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 79 ~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~ 148 (169)
+..+| ..+..+++|++|++++|++..+ +..+..+++|+.|++++| .++.++ ..+..+++|+.+++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 44454 3456667777777777777664 345666677777777763 444443 346666777777777654
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=3.9e-16 Score=107.56 Aligned_cols=117 Identities=26% Similarity=0.271 Sum_probs=86.2
Q ss_pred hhcc-chhhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc
Q 030892 31 IREL-SFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA 107 (169)
Q Consensus 31 l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~ 107 (169)
+..+ |..+..+++|++|++++|. ++.++ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|++..+|.
T Consensus 52 i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~ 129 (229)
T 3e6j_A 52 ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPR 129 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCc
Confidence 3444 3467778888888888854 45555 445778888888888854 44554 456788888888888888888888
Q ss_pred ccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCC
Q 030892 108 SIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 108 ~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~ 150 (169)
.+..+++|+.|++++ +.++.++ ..+..+++|+.+++++|+..
T Consensus 130 ~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 130 GIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888888888888887 4566665 45777888888888886543
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=3.8e-16 Score=108.96 Aligned_cols=147 Identities=22% Similarity=0.239 Sum_probs=112.2
Q ss_pred CCCcEEeccCCcCCcccC-chHHhhc-------cCCChhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEe
Q 030892 2 KSLKTLVLSGCLKLKKFP-DIVQVLG-------DRTDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLK 72 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p-~~~~~~~-------~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 72 (169)
++++.|++++|. +..++ ..+..+. ..+.++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 468999999888 54443 3333311 1344556655 578899999999999654444445678899999999
Q ss_pred eCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcC
Q 030892 73 LSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 73 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~ 149 (169)
+++|. +..++ ..+..+++|++|++++|++..++. .+..+++|+.|++++| .++.++ ..+..+++|+.+++++|+.
T Consensus 114 L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 114 LGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99964 55565 457889999999999999999876 5889999999999995 555555 5788999999999999765
Q ss_pred Cc
Q 030892 150 LK 151 (169)
Q Consensus 150 ~~ 151 (169)
..
T Consensus 192 ~c 193 (251)
T 3m19_A 192 DC 193 (251)
T ss_dssp CT
T ss_pred eC
Confidence 43
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=1.3e-16 Score=123.64 Aligned_cols=162 Identities=18% Similarity=0.124 Sum_probs=72.0
Q ss_pred CCCcEEeccCCcCCcccCchHHhhcc-------CCChhcc-chhhhcccccceeeecCccccccchh-hccCCCCCCEEe
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIREL-SFAIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLK 72 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~ 72 (169)
++|++|++++|. ++.+|+.+..+.. .+.+..+ |..+..+++|+++++++|.....++. .+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 566777777665 5566654433111 1223333 23455555566666655443333332 244455555555
Q ss_pred eCCccccccc--ccccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCc
Q 030892 73 LSGLLKFREF--PEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 73 l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~ 148 (169)
+++|...... +..+..+++|++|++++|++..+ |..+..+++|+.|++++|......+ ..+.++++|+.|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 5553322211 33444445555555555544442 3334444455555554432222222 124444444444444443
Q ss_pred CCcccCcccCCccchh
Q 030892 149 KLKNVPETLGKVESLE 164 (169)
Q Consensus 149 ~~~~~p~~~~~l~~L~ 164 (169)
.....|..++.+++|+
T Consensus 437 l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQ 452 (606)
T ss_dssp CBTTCTTTTTTCTTCC
T ss_pred cCCcCHHHHhCCCCCC
Confidence 3333333444444433
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=3.5e-17 Score=125.52 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=73.6
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC--cccccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG--LPASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~l~~ 114 (169)
.+..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|++|++++|++.. .|..++++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 45566666666666653333334455666666666666643332222346666666666666666654 3445566666
Q ss_pred CCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 115 NVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 115 L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
|+.|++++|..++.+| ..+.++++|++|++++|......|..++.++.|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 6666666654455554 35666666666666665554445555555554443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2e-16 Score=114.40 Aligned_cols=105 Identities=22% Similarity=0.155 Sum_probs=55.2
Q ss_pred hccCCCCCCEEeeCCccccc--ccccccCCCCCCcEEEecCcccCCcc----------------------cccccCCCCC
Q 030892 61 TISVLKYLSTLKLSGLLKFR--EFPEKTSSKDQLLEIHLEGTAIRGLP----------------------ASIELLSGNV 116 (169)
Q Consensus 61 ~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~----------------------~~~~~l~~L~ 116 (169)
.+..+++|+++++++|.... ..+..+..+++|++|++++|++..+| ..+..+++|+
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 35566777777777754321 23345555666666655555544433 2344455555
Q ss_pred eEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 117 LLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 117 ~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
.|++++|......+..+..+++|+.|++++| .+..+|.++..++.|++|
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence 5555553222222234555566666666663 344556555555555543
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.9e-17 Score=131.78 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=93.8
Q ss_pred ChhccchhhhcccccceeeecCccccc-----------------cchhhcc--CCCCCCEEeeCCcccccccccccCCCC
Q 030892 30 DIRELSFAIELLFRLVLLTLNGCKNLE-----------------RLERTIS--VLKYLSTLKLSGLLKFREFPEKTSSKD 90 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~-----------------~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~ 90 (169)
.++.+|..+.++++|++|++++|.... .+|..+. .+++|++|++++|.....+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 344477778888888888888865444 2777666 788888888888776777777778888
Q ss_pred CCcEEEecCcc-cCC--cccccccCC-------CCCeEecCCCcccccCcc--cccCCCCCceEeccCCcCCcccCcccC
Q 030892 91 QLLEIHLEGTA-IRG--LPASIELLS-------GNVLLNLKDCKNLKSLPS--TTNGLRSLRMLHLSGCSKLKNVPETLG 158 (169)
Q Consensus 91 ~L~~L~l~~~~-l~~--~~~~~~~l~-------~L~~l~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~~ 158 (169)
+|++|++++|+ ++. +|..++.++ +|+.|++++| .+..+|. .+.++++|+.|++++|.. ..+| .++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc-ccch-hhc
Confidence 88888888886 664 666555444 7777777774 4447776 677777777777777543 3666 666
Q ss_pred Cccchhhh
Q 030892 159 KVESLEVR 166 (169)
Q Consensus 159 ~l~~L~~l 166 (169)
.+++|+.|
T Consensus 593 ~L~~L~~L 600 (876)
T 4ecn_A 593 TNVKLTDL 600 (876)
T ss_dssp TTSEESEE
T ss_pred CCCcceEE
Confidence 66666554
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=5.1e-17 Score=117.04 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=102.6
Q ss_pred CChhccch-hhhcccccceeeecCccccccchhhc-cCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc
Q 030892 29 TDIRELSF-AIELLFRLVLLTLNGCKNLERLERTI-SVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP 106 (169)
Q Consensus 29 ~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 106 (169)
+.++.++. .+..+++|++|++++|......+..+ ..+++|++|++++|. +..++. ...+++|++|++++|++.++|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCCcch
Confidence 34445544 67778889999999865544445544 467889999999964 444543 334788999999999998888
Q ss_pred cccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCC-cccCcccCCccchhhh
Q 030892 107 ASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL-KNVPETLGKVESLEVR 166 (169)
Q Consensus 107 ~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~l 166 (169)
..+..+++|+.|++++ +.++.+|..+..+++|+.+++++|+.. ..+|.+++.++.|+.+
T Consensus 208 ~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 208 PEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp GGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred hhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 7788889999999998 467778888888899999999997766 5677778887777664
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=8.4e-16 Score=104.25 Aligned_cols=115 Identities=27% Similarity=0.331 Sum_probs=77.5
Q ss_pred hccch-hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc
Q 030892 32 RELSF-AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS 108 (169)
Q Consensus 32 ~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~ 108 (169)
+.++. .+..+++|++|++++| .++.++. .+..+++|++|++++|. +..++ ..+..+++|++|++++|++..++..
T Consensus 41 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 41 KSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence 34443 3566778888888875 4444443 45667888888888854 44444 4467778888888888888776643
Q ss_pred -cccCCCCCeEecCCCcccccCcc-cccCCCCCceEeccCCcC
Q 030892 109 -IELLSGNVLLNLKDCKNLKSLPS-TTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 109 -~~~l~~L~~l~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~ 149 (169)
+..+++|+.|++++| .++.++. .+..+++|+.|++++|+.
T Consensus 119 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 567788888888874 4555543 467778888888887643
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=118.79 Aligned_cols=80 Identities=21% Similarity=0.184 Sum_probs=43.6
Q ss_pred cCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccC-cccCCccch
Q 030892 86 TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESL 163 (169)
Q Consensus 86 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L 163 (169)
+..+++|++|++++|++..++ ..+..+++|+.|++++|......|..+.++++|+.|++++|. ++.++ ..+..+++|
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNL 322 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCccc
Confidence 444555555555555555543 234555566666666543333334556666777777777743 33344 345666666
Q ss_pred hhh
Q 030892 164 EVR 166 (169)
Q Consensus 164 ~~l 166 (169)
++|
T Consensus 323 ~~L 325 (477)
T 2id5_A 323 ETL 325 (477)
T ss_dssp CEE
T ss_pred CEE
Confidence 554
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=119.79 Aligned_cols=163 Identities=23% Similarity=0.307 Sum_probs=85.7
Q ss_pred CCCCcEEeccCCcCCccc-CchHHhhc-------cCCChhccchh-hhcccccceeeecCccccccchh--hccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKF-PDIVQVLG-------DRTDIRELSFA-IELLFRLVLLTLNGCKNLERLER--TISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~-p~~~~~~~-------~~~~l~~lp~~-~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~l~ 69 (169)
+++|++|++++|. ++.+ |+.+..+. ..+.++.+|.. +..+++|++|++++| .++.++. .+..+++|+
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCC
T ss_pred CCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCc
Confidence 3566677777665 4433 33332211 12334455543 556666666666663 3334443 345566666
Q ss_pred EEeeCCccccccc-ccccCCCCCCcEEEecCcccCCc-cccccc------------------------CCCCCeEecCCC
Q 030892 70 TLKLSGLLKFREF-PEKTSSKDQLLEIHLEGTAIRGL-PASIEL------------------------LSGNVLLNLKDC 123 (169)
Q Consensus 70 ~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~------------------------l~~L~~l~l~~~ 123 (169)
+|++++|..+..+ +..+..+++|++|++++|++... |..+.. +++|+.|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 6666665333333 23455555555555555555442 333444 445555555543
Q ss_pred cccc-------------------------------cCcccccCCCCCceEeccCCcCCcccCcc-cCCccchhhh
Q 030892 124 KNLK-------------------------------SLPSTTNGLRSLRMLHLSGCSKLKNVPET-LGKVESLEVR 166 (169)
Q Consensus 124 ~~l~-------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 166 (169)
.... .+|..+.++++|+.|++++| .++.+|.. ++.+++|+++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEE
Confidence 2111 12334556778888888885 45577765 4777777654
No 50
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2.5e-16 Score=108.53 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=105.9
Q ss_pred hhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc-
Q 030892 31 IRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS- 108 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~- 108 (169)
++.+|..+. ++|++|++++|......+..+..+++|++|++++|. +..++ ..+..+++|++|++++|+++.++..
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 445555332 689999999976555557778889999999999965 56666 5678999999999999999998754
Q ss_pred cccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccC-cccCCccchhhh
Q 030892 109 IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESLEVR 166 (169)
Q Consensus 109 ~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l 166 (169)
+..+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+| ..+..+++|+++
T Consensus 108 ~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 108 FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 67899999999998 577899988999999999999996 455555 457878877765
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.2e-16 Score=111.38 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=53.6
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
+..+++|++|++++| .++.++. +..+++|+.|++++|. +..++. +..+++|++|++++|++..++. +..+++|+.
T Consensus 103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177 (308)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence 334444444444442 2222322 3444445555554432 222222 4444555555555555554443 445555555
Q ss_pred EecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 118 LNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 118 l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
|++++ +.++.++. +..+++|++|++++|. +..++ .+..+++|+.
T Consensus 178 L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~ 221 (308)
T 1h6u_A 178 LKADD-NKISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFI 221 (308)
T ss_dssp EECCS-SCCCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCE
T ss_pred EECCC-CccCcChh-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCE
Confidence 55555 23333333 4455556666666533 23333 2444554443
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=3.4e-16 Score=121.41 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=35.4
Q ss_pred cccCCCCCCcEEEecCcccCC--cc--cccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCC
Q 030892 84 EKTSSKDQLLEIHLEGTAIRG--LP--ASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGK 159 (169)
Q Consensus 84 ~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 159 (169)
..++.+++|++|++++|++.+ ++ ..+..+++|+.|++++|......|..+..+++|+.|++++|......|+.+..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 334444444444444444432 11 22344444445554443222223344455555555555554444444444544
Q ss_pred ccch
Q 030892 160 VESL 163 (169)
Q Consensus 160 l~~L 163 (169)
++.|
T Consensus 523 l~~L 526 (606)
T 3t6q_A 523 LKGI 526 (606)
T ss_dssp CCSC
T ss_pred cccc
Confidence 4444
No 53
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=4.3e-17 Score=118.93 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCCCcEEeccCCcCCcccCchHHh---------hccCCChhccch-hhhcccccceeeecCccccccchh-hccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQV---------LGDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLER-TISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~---------~~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~ 69 (169)
+++|++|++++|...+.+|..++. ...++.+..+++ .|..+++|+++++++| .+..++. .+....++.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhh
Confidence 467888888888766666543321 123456667754 6778888999998885 4444443 344455677
Q ss_pred EEeeCCcccccccc-cccCCC-CCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcc-cccCCCCCceEeccC
Q 030892 70 TLKLSGLLKFREFP-EKTSSK-DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPS-TTNGLRSLRMLHLSG 146 (169)
Q Consensus 70 ~l~l~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 146 (169)
.+++.++..+..++ ..+..+ ..++.|++++|++++++.......+++.+++.+++.++.+|. .+.++++|+.|++++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 78877766676665 345554 468889999999998887766778899999988788888885 678899999999999
Q ss_pred CcCCcccCc-ccCCccchhh
Q 030892 147 CSKLKNVPE-TLGKVESLEV 165 (169)
Q Consensus 147 ~~~~~~~p~-~~~~l~~L~~ 165 (169)
| .++.+|. .+.+++.|+.
T Consensus 212 N-~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 212 T-RIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp S-CCCCCCSSSCTTCCEEEC
T ss_pred C-CcCccChhhhccchHhhh
Confidence 5 5667764 4666666543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.4e-16 Score=121.45 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=27.9
Q ss_pred hhcccccceeeecCccccccchhh-ccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccC
Q 030892 38 IELLFRLVLLTLNGCKNLERLERT-ISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIR 103 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 103 (169)
|..+++|++|++++| .++.+|.. +..+++|++|++++|......|..++.+++|++|++++|++.
T Consensus 119 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 119 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred HcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 344455555555543 22233322 244445555555543322222234444444444444444443
No 55
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=6.4e-16 Score=105.88 Aligned_cols=136 Identities=19% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCChhccchhhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc
Q 030892 28 RTDIRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP 106 (169)
Q Consensus 28 ~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 106 (169)
.+.++++|..+. ++++.|++++| .++.++ ..+..+++|++|++++|......|..+.++++|++|++++|+++.+|
T Consensus 20 ~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 20 GKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp TSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 345677776544 68999999995 445554 46788999999999996654444788999999999999999999988
Q ss_pred cc-cccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 107 AS-IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 107 ~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
.. +..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+++
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 65 6789999999999854434446788899999999999965444444567777777654
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=5.5e-16 Score=114.44 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=24.2
Q ss_pred hhcccccceeeecCccccccchhh-ccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCccc
Q 030892 38 IELLFRLVLLTLNGCKNLERLERT-ISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAI 102 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 102 (169)
+..+++|++|++++| .++.+|.. +..+++|++|++++|......+..+..+++|++|++++|++
T Consensus 113 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 113 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 344444444444442 22233322 23344444444444322211123334444444444444433
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.3e-16 Score=111.33 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=116.0
Q ss_pred CCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLS 74 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 74 (169)
++|++|++++|. +..+|. +..+. ..+.+..++. +..+++|++|++++| .++.++ .+..+++|+.|+++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCC-ccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECC
Confidence 578999999886 666764 22211 1345566666 888999999999996 455555 47789999999999
Q ss_pred CcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccC
Q 030892 75 GLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP 154 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p 154 (169)
+|. +..++. +..+++|++|++++|++..++. +..+++|+.|++++| .++.++. +..+++|+.|++++|. +..++
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~ 189 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNK-ISDIS 189 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred CCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCc-cCcCh
Confidence 965 555553 8889999999999999988766 778999999999984 6666666 8889999999999954 45555
Q ss_pred cccCCccchhhh
Q 030892 155 ETLGKVESLEVR 166 (169)
Q Consensus 155 ~~~~~l~~L~~l 166 (169)
. +..++.|++|
T Consensus 190 ~-l~~l~~L~~L 200 (308)
T 1h6u_A 190 P-LASLPNLIEV 200 (308)
T ss_dssp G-GGGCTTCCEE
T ss_pred h-hcCCCCCCEE
Confidence 4 6666666654
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=2.5e-16 Score=118.21 Aligned_cols=101 Identities=18% Similarity=0.023 Sum_probs=79.8
Q ss_pred CCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccCcccccCCCCCceEec
Q 030892 66 KYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHL 144 (169)
Q Consensus 66 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l 144 (169)
++++.+++++|......|..++.+++|++|++++|++.++ |..+..+++|+.|++++|...+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4677777777554444567788899999999999999885 567889999999999996444444678889999999999
Q ss_pred cCCcCCcccCcccCCccchhhh
Q 030892 145 SGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 145 ~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++|......|.+++.+++|++|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCcccccChhhccccccccEE
Confidence 9976655567888888888765
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=114.60 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=117.0
Q ss_pred CCCCcEEeccCCcCCcccCchH--Hhhc-------cCCChhccchhhhcc-----cccceeeecCccccccchhhccCCC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIV--QVLG-------DRTDIRELSFAIELL-----FRLVLLTLNGCKNLERLERTISVLK 66 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~--~~~~-------~~~~l~~lp~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~ 66 (169)
+++|++|++++|...+.+|..+ ..+. ..+.+..+|..+..+ ++|++|++++|......+..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4689999999988555677654 2211 134455666677777 8999999999755555557788899
Q ss_pred CCCEEeeCCcccccc--ccccc--CCCCCCcEEEecCcccCCcc---c-ccccCCCCCeEecCCCcccccCc-ccccCCC
Q 030892 67 YLSTLKLSGLLKFRE--FPEKT--SSKDQLLEIHLEGTAIRGLP---A-SIELLSGNVLLNLKDCKNLKSLP-STTNGLR 137 (169)
Q Consensus 67 ~l~~l~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~l~~~~---~-~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~ 137 (169)
+|++|++++|..... ++..+ +.+++|++|++++|++..++ . .+..+++|+.|++++|......| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999765443 23333 78899999999999998643 2 24577999999999954434343 3466789
Q ss_pred CCceEeccCCcCCcccCcccCCccchhh
Q 030892 138 SLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 138 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
+|++|++++|. ++.+|..+. ++|++
T Consensus 254 ~L~~L~Ls~N~-l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 254 QLNSLNLSFTG-LKQVPKGLP--AKLSV 278 (312)
T ss_dssp TCCEEECTTSC-CSSCCSSCC--SEEEE
T ss_pred CCCEEECCCCc-cChhhhhcc--CCceE
Confidence 99999999954 558887665 44443
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=1.5e-16 Score=115.15 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEecCCCcccccCcccccCCCCCceEecc
Q 030892 67 YLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLS 145 (169)
Q Consensus 67 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~ 145 (169)
+|+.|++++|......+..+..+++|++|++++|++..++. .+..+++|+.|++++ +.++.+|..+..+++|+.|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECC
Confidence 34444444432222222445555666666666666665442 455566666666665 3455566556666666666666
Q ss_pred CCc
Q 030892 146 GCS 148 (169)
Q Consensus 146 ~~~ 148 (169)
+|.
T Consensus 273 ~N~ 275 (332)
T 2ft3_A 273 TNN 275 (332)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=5e-16 Score=104.64 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=103.5
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccc
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFR 80 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 80 (169)
+++|++|++++|. +. .++ .+..+++|++|++++|......+..+..+++|++|++++|....
T Consensus 65 l~~L~~L~l~~n~-~~----------------~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 65 AHNIKDLTINNIH-AT----------------NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CTTCSEEEEESCC-CS----------------CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred CCCCCEEEccCCC-CC----------------cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 4688999999884 32 222 46678899999999976555567778889999999999976555
Q ss_pred ccccccCCCCCCcEEEecCcc-cCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCc
Q 030892 81 EFPEKTSSKDQLLEIHLEGTA-IRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 148 (169)
..+..+..+++|++|++++|+ +..++ .+..+++|+.|++++| .++.++ .+..+++|++|++++|+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 567888999999999999997 88887 6788999999999984 566666 58889999999999964
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=7.2e-16 Score=109.83 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=101.8
Q ss_pred CCCcEEeccCCcCCcccCchHHh------hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSG 75 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 75 (169)
++|++|++++|. +..+|..... .-..+.++.++. +..+++|++|++++| .++.++. +..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTT
T ss_pred CcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCC
Confidence 467888888776 5666542111 011234455555 777888888888885 4455554 67788888888888
Q ss_pred cccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCc
Q 030892 76 LLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPE 155 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 155 (169)
|. +..+ ..+..+++|++|++++|++..+ ..+..+++|+.|++++| .++.++. +..+++|++|++++| .++.++.
T Consensus 122 n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 122 NG-ISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp SC-CCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG
T ss_pred Cc-CCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh
Confidence 54 4444 4566777888888888888776 45677788888888874 5555554 777888888888885 4455553
Q ss_pred ccCCccchhhh
Q 030892 156 TLGKVESLEVR 166 (169)
Q Consensus 156 ~~~~l~~L~~l 166 (169)
+..+++|+.|
T Consensus 196 -l~~l~~L~~L 205 (291)
T 1h6t_A 196 -LAGLKNLDVL 205 (291)
T ss_dssp -GTTCTTCSEE
T ss_pred -hccCCCCCEE
Confidence 6666666543
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.6e-16 Score=110.00 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=113.2
Q ss_pred CCCcEEeccCCcCCcccCch-HHh--------hccCCChhccch-hhhcccccceeeecCccccccch-hhccCCCCCCE
Q 030892 2 KSLKTLVLSGCLKLKKFPDI-VQV--------LGDRTDIRELSF-AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLST 70 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~-~~~--------~~~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~ 70 (169)
++|++|++++|. ++.+|.. +.. +.++..++.++. .|..+++|+++++++|+.++.++ ..+..+++|++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 368889999887 6666553 322 222323667766 67788889999998755666655 45677888999
Q ss_pred EeeCCcccccccccccCCCCCCc---EEEecCc-ccCCccc-ccccCCCCC-eEecCCCcccccCcccccCCCCCceEec
Q 030892 71 LKLSGLLKFREFPEKTSSKDQLL---EIHLEGT-AIRGLPA-SIELLSGNV-LLNLKDCKNLKSLPSTTNGLRSLRMLHL 144 (169)
Q Consensus 71 l~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~-~~~~l~~L~-~l~l~~~~~l~~~~~~~~~l~~L~~L~l 144 (169)
|++++|. +..+|. +..+++|+ +|++++| ++..++. .+..+++|+ .+++++ +.++.+|......++|+.|++
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEEC
T ss_pred EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEc
Confidence 9988854 455665 77777787 8899888 8888765 477888898 999987 456677654333378999999
Q ss_pred cCCcCCcccC-cccCCc-cchhhh
Q 030892 145 SGCSKLKNVP-ETLGKV-ESLEVR 166 (169)
Q Consensus 145 ~~~~~~~~~p-~~~~~l-~~L~~l 166 (169)
++|..++.+| ..++.+ +.|++|
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEE
T ss_pred CCCCCcccCCHHHhhccccCCcEE
Confidence 9865455665 456777 776654
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=119.91 Aligned_cols=133 Identities=22% Similarity=0.138 Sum_probs=82.4
Q ss_pred hhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-c
Q 030892 31 IRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-S 108 (169)
Q Consensus 31 l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~ 108 (169)
++.++. .|..+++|++|++++|......+..+..+++|++|++++|......+..+.++++|++|++++|++..++. .
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 119 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc
Confidence 344433 56677777777777754333334456667777777777754333233567777777777777777777654 4
Q ss_pred cccCCCCCeEecCCCcccc-cCcccccCCCCCceEeccCCcCCcccCcccCCccch
Q 030892 109 IELLSGNVLLNLKDCKNLK-SLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESL 163 (169)
Q Consensus 109 ~~~l~~L~~l~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 163 (169)
++.+++|+.|++++|.... .+|..++++++|++|++++|......|..++.++.|
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 6677777777777743332 356667777777777777754443334445444444
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=5e-16 Score=109.68 Aligned_cols=127 Identities=22% Similarity=0.203 Sum_probs=62.7
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccc-ccccccCCCCCCcEEEecCcccCCcc-cccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFR-EFPEKTSSKDQLLEIHLEGTAIRGLP-ASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~ 114 (169)
.+..+++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|++..++ ..+..+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 45556666666666543322222235555666666666643222 13555555666666666666665543 33444444
Q ss_pred CC----eEecCCCcccccCcccccCCCCCceEeccCCcCCcccCc-ccCCccchhh
Q 030892 115 NV----LLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPE-TLGKVESLEV 165 (169)
Q Consensus 115 L~----~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~ 165 (169)
++ .+++++ +.++.++.......+|+.|++++|. ++.+|. .++.+++|++
T Consensus 175 L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 175 MPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCE
T ss_pred ccccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccE
Confidence 44 555555 3344443333333356666666643 333433 3455555543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=1.5e-16 Score=114.52 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=92.4
Q ss_pred ccccceeeecCccccccchhhccCCCCCCEEeeCCccccccccccc-CCCCCCcEEEecCcccCCcccccccCCCCCeEe
Q 030892 41 LFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKT-SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLN 119 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~ 119 (169)
+++|+.+++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++|+++.++... .+++|+.|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEE
Confidence 4567888888754444344466778899999999965444334444 46788999999999988876443 488999999
Q ss_pred cCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 120 LKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 120 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+++ +.++.+|..+..+++|+.|++++| .+..+|..+..++.|+.+
T Consensus 198 Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 198 LSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp CCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEE
T ss_pred CCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEE
Confidence 998 567777766888999999999995 556788888888877765
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=3.1e-16 Score=119.03 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=101.2
Q ss_pred Chhcc-chhhhcccccceeeecCccccccchhhcc-CCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc
Q 030892 30 DIREL-SFAIELLFRLVLLTLNGCKNLERLERTIS-VLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA 107 (169)
Q Consensus 30 ~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 107 (169)
.+..+ |..+..+++|+.|++++|......|..+. .+++|++|++++|. +..++. ...+++|++|++++|+++.+|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCCCCCCCH
Confidence 34444 33677888899999988766555666664 68889999998865 444443 3358889999999999988887
Q ss_pred ccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCC-cccCcccCCccchhhh
Q 030892 108 SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL-KNVPETLGKVESLEVR 166 (169)
Q Consensus 108 ~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~l 166 (169)
.+..+++|+.|++++ +.+..+|..+..+++|+.+++++|+.. ..+|.+++.++.|+.+
T Consensus 209 ~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 209 EFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp GGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred hHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 788889999999998 566678887888889999999997665 4667777777777654
No 68
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.7e-15 Score=106.48 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCCcEEeccCCcCCcccCchHHhh-------ccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVL-------GDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLS 74 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~-------~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 74 (169)
++|++|++++|. ++.+|. +..+ -..+.++.++. +..+++|+.|++++| .++.++. +.. ++|+.|+++
T Consensus 41 ~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQSLAG-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNG-IPS-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT-CCC-SSCCEEECC
T ss_pred CcCcEEECcCCC-cccchH-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCc-ccc-CcccEEEcc
Confidence 567888888775 555552 2111 01233444444 556666666666663 3444443 222 566666666
Q ss_pred CcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCc
Q 030892 75 GLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 148 (169)
+|. +..++ .+..+++|++|++++|++++++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.
T Consensus 115 ~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 115 NNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 643 33332 4556666666666666666654 4556666666666663 34433 445566666666666643
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=2.2e-15 Score=111.24 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCcEEeccCCcCCcccCchHHh-hc-------cCCChhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEe
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV-LG-------DRTDIRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLK 72 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-~~-------~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 72 (169)
++++.+++++|. ++.+|..+.. +. ..+.++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 567777777665 6656554322 11 1223334433 455555566666655433322333445555566666
Q ss_pred eCCcccccccccc-cCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCC
Q 030892 73 LSGLLKFREFPEK-TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKD 122 (169)
Q Consensus 73 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~ 122 (169)
+++| .+..+|.. +..+++|++|++++|++..++ ..+..+++|+.|++++
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 6553 23344432 355555666666655555543 3355555566666555
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=2.1e-15 Score=109.62 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=88.2
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
+..+++|+.+++++| .++.++. +..+++|++|++++|. +..+ +.+..+++|++|++++|++.+++ .+..+++|+.
T Consensus 217 ~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~ 291 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNS 291 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCE
Confidence 667778888888875 4444444 6678888888888864 4434 45777888889999888888774 4677888999
Q ss_pred EecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 118 LNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 118 l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
|++++|......+..+..+++|+.|++++|.... ++. ++.++.|+++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSA 338 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEE
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhcccee
Confidence 9998865555556778888899999999876444 433 6666666554
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=115.83 Aligned_cols=129 Identities=20% Similarity=0.255 Sum_probs=74.0
Q ss_pred cchhhhcccccceeeecCccccc--cchhhccCCCCCCEEeeCCccccccccc-ccCCCCCCcEEEecCcccCC-ccccc
Q 030892 34 LSFAIELLFRLVLLTLNGCKNLE--RLERTISVLKYLSTLKLSGLLKFREFPE-KTSSKDQLLEIHLEGTAIRG-LPASI 109 (169)
Q Consensus 34 lp~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~ 109 (169)
+|..+..+++|++|++++|.... .+|..+..+++|++|++++|.....+|. .+..+++|++|++++|++.. .|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 44556666667777776653332 3445556666777777766543332553 35556666666666666644 33332
Q ss_pred ccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcc-cCCccchhhh
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPET-LGKVESLEVR 166 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 166 (169)
. ++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|.. +..++.|+++
T Consensus 420 ~--~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 420 P--PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp C--TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred c--ccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 2 5666666666 345566665556666666666664 33455554 5555555543
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=124.70 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=83.7
Q ss_pred CCCcEEeccCCcCCccc-CchHHh--------hccCCChhcc-chhhhcccccceeeecCccccccchhhccCCCCCCEE
Q 030892 2 KSLKTLVLSGCLKLKKF-PDIVQV--------LGDRTDIREL-SFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTL 71 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~-p~~~~~--------~~~~~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 71 (169)
++|++|++++|. ++.+ |..+.. +..+..+..+ |..|.++++|++|++++|......|..+..+++|++|
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 567788888776 3333 333332 1222223344 3456666677777776654444445666666677777
Q ss_pred eeCCcccccccccc--cCCCCCCcEEEecCcccCCcc--cccccCCCCCeEecCCCcccccCcccccCC--CCCceEecc
Q 030892 72 KLSGLLKFREFPEK--TSSKDQLLEIHLEGTAIRGLP--ASIELLSGNVLLNLKDCKNLKSLPSTTNGL--RSLRMLHLS 145 (169)
Q Consensus 72 ~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l--~~L~~L~l~ 145 (169)
++++|.....++.. ++.+++|++|++++|.+..++ ..++++++|+.|++++|......+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 77665443333332 666666777777776666532 346666777777766643333334444433 455555555
Q ss_pred CCcCCcccCc
Q 030892 146 GCSKLKNVPE 155 (169)
Q Consensus 146 ~~~~~~~~p~ 155 (169)
+|......|.
T Consensus 183 ~n~l~~~~~~ 192 (844)
T 3j0a_A 183 ANSLYSRVSV 192 (844)
T ss_dssp CSBSCCCCCC
T ss_pred CCcccccccc
Confidence 5444443443
No 73
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.2e-16 Score=126.53 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=103.1
Q ss_pred hhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc
Q 030892 31 IRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 110 (169)
+...+..+..+++|+.|++++| .+..+|..+..+++|++|++++|. +..+|..++.+++|++|++++|+++.+|..++
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 3344567889999999999995 456788777789999999999965 55889889999999999999999999999999
Q ss_pred cCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCc
Q 030892 111 LLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKV 160 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 160 (169)
.+++|+.|++++ +.++.+|..++.+++|+.|++++|.....+|..+..+
T Consensus 291 ~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 291 SCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999998 4778999889999999999999987766677665443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.6e-16 Score=119.46 Aligned_cols=123 Identities=15% Similarity=0.003 Sum_probs=93.7
Q ss_pred ccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccC-CCCCCcEEEecCcccCCcccccccCCCCCeEe
Q 030892 41 LFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTS-SKDQLLEIHLEGTAIRGLPASIELLSGNVLLN 119 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~ 119 (169)
+++|+.|++++|......|..+..+++|++|++++|......|..+. .+++|++|++++|.++.++.. ..+++|+.|+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~ 197 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLD 197 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEE
Confidence 46778888888655555566677788999999999765554565554 688899999999988877543 3588999999
Q ss_pred cCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 120 LKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 120 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+++ +.+..+|..+..+++|+.|++++| .+..+|..++.++.|+.+
T Consensus 198 Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 198 LSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHF 242 (487)
T ss_dssp CCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEE
T ss_pred CCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEE
Confidence 998 466677766888999999999995 455688888877777654
No 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=103.34 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=106.2
Q ss_pred CCChhccchhhhcccccceeeecCccccccc-h-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCC
Q 030892 28 RTDIRELSFAIELLFRLVLLTLNGCKNLERL-E-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRG 104 (169)
Q Consensus 28 ~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~-~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 104 (169)
.+.++++|..+. ..+++|++++| .++.+ + ..+..+++|++|++++|. +..++ ..+..+++|++|++++|++..
T Consensus 20 ~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 20 NQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCc
Confidence 355677887543 35789999996 45554 3 346789999999999965 55554 589999999999999999999
Q ss_pred ccc-ccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 105 LPA-SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 105 ~~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++. .+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|+++
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 765 58899999999999954444446789999999999999966655557888888888765
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=9.3e-16 Score=111.01 Aligned_cols=74 Identities=28% Similarity=0.370 Sum_probs=46.6
Q ss_pred CCcEEEecCcccCCcc-cccccCCCCCeEecCCCcccccC-cccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 91 QLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCKNLKSL-PSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+|++|++++|++..++ ..+..+++|+.|++++| .++.+ +..+..+++|+.|++++| .+..+|.+++.++.|++|
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVV 269 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEE
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEE
Confidence 4555555555555543 44666677777777764 34433 346777778888888874 455777777777776654
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.9e-16 Score=100.60 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=88.9
Q ss_pred ccccceeeecCcccc-ccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCeE
Q 030892 41 LFRLVLLTLNGCKNL-ERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLL 118 (169)
Q Consensus 41 l~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l 118 (169)
.++++.+++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|++.. +|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888886544 3677767778888888888864 4444 667778888888888888887 67767778888888
Q ss_pred ecCCCcccccCc--ccccCCCCCceEeccCCcCCcccCc----ccCCccchhhh
Q 030892 119 NLKDCKNLKSLP--STTNGLRSLRMLHLSGCSKLKNVPE----TLGKVESLEVR 166 (169)
Q Consensus 119 ~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~l 166 (169)
++++| .++.++ ..+..+++|++|++++|. +..+|. .++.+++|+.|
T Consensus 94 ~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence 88884 455554 667888888888888864 444443 56666666654
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=9.6e-17 Score=123.78 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=89.4
Q ss_pred ccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCC
Q 030892 43 RLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 122 (169)
Q Consensus 43 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~ 122 (169)
.|+.|++++| .++.+|. +..+++|+.|++++|. +..+|..++.+++|+.|++++|+++.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 4667888874 5566776 7788899999998854 5578888888999999999999988888 788889999999988
Q ss_pred CcccccC--cccccCCCCCceEeccCCcCCcccCccc----CCccchhhh
Q 030892 123 CKNLKSL--PSTTNGLRSLRMLHLSGCSKLKNVPETL----GKVESLEVR 166 (169)
Q Consensus 123 ~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~l 166 (169)
| .++.+ |..+..+++|+.|++++|+ +..+|+.. ..+++|++|
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 4 55555 7888889999999999854 44444433 235555544
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=111.65 Aligned_cols=154 Identities=21% Similarity=0.149 Sum_probs=107.2
Q ss_pred cEEeccCCcCCcccCchHHh-----hccCCChhccch-hhh-cccccceeeecCccccccchhhccCCCCCCEEeeCCcc
Q 030892 5 KTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELSF-AIE-LLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 5 ~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp~-~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 77 (169)
+.++++++. ++.+|..+.. .-..+.++.++. .+. .+++|++|++++|......+..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 456677554 6666654433 112345666665 354 78899999999854433334567888999999999965
Q ss_pred cccccc-cccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccCccc-c---cCCCCCceEeccCCcCCc
Q 030892 78 KFREFP-EKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSLPST-T---NGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 78 ~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~~~~-~---~~l~~L~~L~l~~~~~~~ 151 (169)
+..++ ..+..+++|++|++++|++..+ +..+..+++|+.|++++ +.++.+|.. + ..+++|+.|++++| .++
T Consensus 100 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred -CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 55554 5688899999999999999886 46788899999999998 567777754 3 56889999999985 455
Q ss_pred ccC-cccCCccc
Q 030892 152 NVP-ETLGKVES 162 (169)
Q Consensus 152 ~~p-~~~~~l~~ 162 (169)
.+| ..+..++.
T Consensus 177 ~l~~~~~~~l~~ 188 (361)
T 2xot_A 177 KLPLTDLQKLPA 188 (361)
T ss_dssp CCCHHHHHHSCH
T ss_pred ccCHHHhhhccH
Confidence 555 34444443
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-16 Score=115.69 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=91.5
Q ss_pred CCCcEEeccCCcCCcc-cCchHHhhcc-------CCChh-ccchhhhcccccceeeecCcccccc--chhhccCCCCCCE
Q 030892 2 KSLKTLVLSGCLKLKK-FPDIVQVLGD-------RTDIR-ELSFAIELLFRLVLLTLNGCKNLER--LERTISVLKYLST 70 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~-~p~~~~~~~~-------~~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~ 70 (169)
++|++|++++|..... +|..+..+.. .+.+. ..+..+..+++|++|++++|..++. ++..+..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5667777776652222 3433332111 01122 2344566677777777777644442 4444556777777
Q ss_pred EeeCCcccccc--cccccCCCC-CCcEEEecCc--ccC--CcccccccCCCCCeEecCCCcccc-cCcccccCCCCCceE
Q 030892 71 LKLSGLLKFRE--FPEKTSSKD-QLLEIHLEGT--AIR--GLPASIELLSGNVLLNLKDCKNLK-SLPSTTNGLRSLRML 142 (169)
Q Consensus 71 l~l~~~~~~~~--~~~~~~~~~-~L~~L~l~~~--~l~--~~~~~~~~l~~L~~l~l~~~~~l~-~~~~~~~~l~~L~~L 142 (169)
|++++|..+.. ++..+..++ +|++|++++| .++ .++..+..+++|+.|++++|..++ ..+..+..+++|++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 77777633432 345556666 7777777777 343 255556667777777777765333 344556667777777
Q ss_pred eccCCcCCc-ccCcccCCccchhhh
Q 030892 143 HLSGCSKLK-NVPETLGKVESLEVR 166 (169)
Q Consensus 143 ~l~~~~~~~-~~p~~~~~l~~L~~l 166 (169)
++++|..+. .....++.+++|++|
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 777764322 111235555555543
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=3.9e-15 Score=114.14 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=94.4
Q ss_pred CCCcEEeccCCcCCcccCchHHh-hcc-------CCChhc-cch---hhhcccccceeeecCccccccch---hhccCCC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV-LGD-------RTDIRE-LSF---AIELLFRLVLLTLNGCKNLERLE---RTISVLK 66 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-~~~-------~~~l~~-lp~---~~~~l~~L~~l~l~~~~~~~~~~---~~~~~~~ 66 (169)
++|++|++++|. ++.+|..+.. +.. .+.+.. +|. .+..+++|++|++++| .++.++ ..+..++
T Consensus 310 ~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCC
Confidence 356777777665 5666665532 111 112221 221 2455666777777764 333332 2355667
Q ss_pred CCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccc------------------ccCCCCCeEecCCCccccc
Q 030892 67 YLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI------------------ELLSGNVLLNLKDCKNLKS 128 (169)
Q Consensus 67 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~------------------~~l~~L~~l~l~~~~~l~~ 128 (169)
+|++|++++| .+..+|..+..+++|++|++++|++..+|..+ ..+++|+.|++++| .++.
T Consensus 388 ~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ 465 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKT 465 (549)
T ss_dssp TCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSS
T ss_pred CCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCc
Confidence 7777777774 34456666666666666666666665544321 25677888888874 5667
Q ss_pred CcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 129 LPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+|. ...+++|+.|++++|......|..++.+++|+++
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 776 3567888888888865555455567777776654
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=4.6e-15 Score=114.32 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=81.7
Q ss_pred cchhhhcccccceeeecCccccc--cchhhccCCCCCCEEeeCCccccccccc-ccCCCCCCcEEEecCcccCC-ccccc
Q 030892 34 LSFAIELLFRLVLLTLNGCKNLE--RLERTISVLKYLSTLKLSGLLKFREFPE-KTSSKDQLLEIHLEGTAIRG-LPASI 109 (169)
Q Consensus 34 lp~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~ 109 (169)
+|..+..+++|++|++++|.... .+|..+..+++|+.|++++|.....+|. .+..+++|++|++++|++++ .|..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 45566677777777777753322 3344566677777777777554433553 46667777777777777754 33332
Q ss_pred ccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcc-cCCccchhhh
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPET-LGKVESLEVR 166 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 166 (169)
. ++|+.|++++ +.++.+|..+.++++|+.|++++| .++.+|.. +..++.|+++
T Consensus 449 ~--~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 449 P--PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp C--TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred c--CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 2 5777777777 366677766667777777777774 44466655 6666666544
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=6e-15 Score=114.51 Aligned_cols=110 Identities=17% Similarity=0.083 Sum_probs=50.1
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCC
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNV 116 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~ 116 (169)
+..+++|++|++++|......+..+..+++|++|++++|......|..++.+++|++|++++|++..+|.. ++.+++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34445555555555332222223444455555555555332222223345555555555555555554433 34455555
Q ss_pred eEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 117 LLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 117 ~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
.|++++|......|..+..+++|+.|++++|
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 5555553222222334455555555555553
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=5.3e-15 Score=116.15 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=102.3
Q ss_pred CCCcEEeccCCcCCcccCch-HHhhcc-------CCChhcc-chhhhcccccceeeecCccccccchh-hccCCCCCCEE
Q 030892 2 KSLKTLVLSGCLKLKKFPDI-VQVLGD-------RTDIREL-SFAIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTL 71 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~-~~~~~~-------~~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l 71 (169)
+++++|++++|. ++.+|.. +..+.. .+.+..+ |..+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEE
Confidence 467888888776 5555543 333211 2334444 446777888888888875 4445554 57778888888
Q ss_pred eeCCcccccccc-cccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecCCCcccccC-cccc--cCCCCCceEeccC
Q 030892 72 KLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDCKNLKSL-PSTT--NGLRSLRMLHLSG 146 (169)
Q Consensus 72 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~~~~~l~~~-~~~~--~~l~~L~~L~l~~ 146 (169)
++++|.. ..++ ..++.+++|++|++++|++... +..++.+++|+.|++++| .++.+ +..+ ..+++|+.|++++
T Consensus 103 ~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCC
Confidence 8888643 4443 5677888888888888877764 455677888888888874 34443 3333 2457788888888
Q ss_pred CcCCcccCcccCCccchh
Q 030892 147 CSKLKNVPETLGKVESLE 164 (169)
Q Consensus 147 ~~~~~~~p~~~~~l~~L~ 164 (169)
|......|..++.++.|+
T Consensus 181 n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CCCCCBCTTGGGGSSEEC
T ss_pred CcccccChhhhhhhhhhh
Confidence 655544555565555543
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=6.3e-15 Score=115.72 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=15.8
Q ss_pred ccCCCCCeEecCCCcccccCcc-cccCCCCCceEeccC
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPS-TTNGLRSLRMLHLSG 146 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 146 (169)
.++++|+.|++++ +.++.+|. .+.++++|+.|++++
T Consensus 533 ~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 533 KGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC
Confidence 3444444444444 23333332 344444555555544
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=6.5e-15 Score=99.86 Aligned_cols=130 Identities=24% Similarity=0.311 Sum_probs=99.5
Q ss_pred hhccchhhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc
Q 030892 31 IRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS 108 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~ 108 (169)
++++|..+ .+++++|++++|. ++.++ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|++..++..
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34555433 3589999999964 44554 456789999999999964 55565 5578899999999999999997754
Q ss_pred -cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCc-ccCCccchhhh
Q 030892 109 -IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPE-TLGKVESLEVR 166 (169)
Q Consensus 109 -~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l 166 (169)
+..+++|+.|++++| .++.++ ..+..+++|++|++++|.. +.++. .++.+++|+++
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEE
T ss_pred HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEE
Confidence 688999999999985 566665 4578899999999999654 45554 47777777664
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=1.4e-14 Score=105.30 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
+++|++|++++|. ++.+|. +..+. ..+.++.++ .+..+++|+++++++| .+..++. +..+++|+.+++
T Consensus 65 ~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEEC
Confidence 3556666666664 444443 22110 012223332 3455555555555553 2333332 334444444444
Q ss_pred CCc
Q 030892 74 SGL 76 (169)
Q Consensus 74 ~~~ 76 (169)
++|
T Consensus 140 ~~n 142 (347)
T 4fmz_A 140 GAN 142 (347)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.8e-15 Score=97.44 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRE 81 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 81 (169)
++|++|++++|. +. . ..+|..+..+++|++|++++| .++.+ ..+..+++|++|++++|.....
T Consensus 17 ~~l~~L~l~~n~-l~----------~----~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNSR-SN----------E----GKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTCB-CB----------T----TBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCCc-CC----------h----hHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccch
Confidence 468889999887 32 0 144555677889999999996 55555 6678899999999999765444
Q ss_pred cccccCCCCCCcEEEecCcccCCcc--cccccCCCCCeEecCCCcccccCcc----cccCCCCCceEeccC
Q 030892 82 FPEKTSSKDQLLEIHLEGTAIRGLP--ASIELLSGNVLLNLKDCKNLKSLPS----TTNGLRSLRMLHLSG 146 (169)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~l~l~~~~~l~~~~~----~~~~l~~L~~L~l~~ 146 (169)
+|..+..+++|++|++++|++.+++ ..++.+++|+.|++++| .+..++. .+..+++|+.|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777999999999999999865 77899999999999995 5666554 688899999999863
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.8e-15 Score=97.74 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=101.2
Q ss_pred cccccceeeecCcccc-ccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCe
Q 030892 40 LLFRLVLLTLNGCKNL-ERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVL 117 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~ 117 (169)
..++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|++.. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999997544 3778777889999999999976 5555 788889999999999999998 7777778999999
Q ss_pred EecCCCcccccCc--ccccCCCCCceEeccCCcCCcccCc----ccCCccchhhh
Q 030892 118 LNLKDCKNLKSLP--STTNGLRSLRMLHLSGCSKLKNVPE----TLGKVESLEVR 166 (169)
Q Consensus 118 l~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~l 166 (169)
|++++| .++.++ ..+..+++|++|++++|. +..+|. .+..++.|++|
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence 999995 677765 678899999999999964 455555 67888887765
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=6.2e-15 Score=105.01 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=109.4
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
+++|++|++++|. ++.++. +..+. ..+.++.++. +..+++|++|++++| .+..++ .+..+++|+.|++
T Consensus 67 l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l 141 (291)
T 1h6t_A 67 LPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYL 141 (291)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEc
Confidence 5789999999987 666665 32211 1334455554 888999999999996 455554 4778999999999
Q ss_pred CCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcC
Q 030892 74 SGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 149 (169)
++|. +..+ ..+..+++|++|++++|++..++. +..+++|+.|++++ +.++.++. +..+++|+.|++++|+.
T Consensus 142 ~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 142 GNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK-NHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC-CcCCCChh-hccCCCCCEEECcCCcc
Confidence 9965 4444 577889999999999999998776 88999999999998 46777765 88999999999999654
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=110.79 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=116.3
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhcc-------CCChh---ccchhhhcccccceeeecCccccccchhh-ccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIR---ELSFAIELLFRLVLLTLNGCKNLERLERT-ISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~---~lp~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~l~ 69 (169)
+++|++|++++|...+.+|..+..+.. .+.+. .+|..+..+++|++|++++|.....+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 478999999999855546655544211 23333 45567889999999999997655547754 67789999
Q ss_pred EEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCccc-ccCCCCCceEeccCCc
Q 030892 70 TLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPST-TNGLRSLRMLHLSGCS 148 (169)
Q Consensus 70 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 148 (169)
.|++++|.....+|..+. ++|++|++++|+++.+|..+..+++|+.|++++| .++.+|.. +..+++|+.+++++|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 999999876555565543 6899999999999999998889999999999994 67788875 8899999999999977
Q ss_pred CCc
Q 030892 149 KLK 151 (169)
Q Consensus 149 ~~~ 151 (169)
...
T Consensus 480 ~~c 482 (520)
T 2z7x_B 480 WDC 482 (520)
T ss_dssp BCC
T ss_pred Ccc
Confidence 554
No 92
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=1e-14 Score=97.82 Aligned_cols=107 Identities=22% Similarity=0.174 Sum_probs=76.0
Q ss_pred ccceeeecCccccccchh--hccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEe
Q 030892 43 RLVLLTLNGCKNLERLER--TISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLN 119 (169)
Q Consensus 43 ~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~ 119 (169)
++++|++++| .++.++. .+..+++|++|++++|......|..+..+++|++|++++|+++.++. .+..+++|+.|+
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 6778888875 4444443 36678888888888865444446777888888888888888877554 467788888888
Q ss_pred cCCCcccccCcccccCCCCCceEeccCCcCC
Q 030892 120 LKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 120 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 150 (169)
+++|+.....|..+..+++|++|++++|+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8875444445667777888888888886543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=107.61 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=75.7
Q ss_pred CCCcEEeccCCcCCcccCchH--Hhhcc-------CCChhc----cc-hhhhcccccceeeecCccccccchhhccCCCC
Q 030892 2 KSLKTLVLSGCLKLKKFPDIV--QVLGD-------RTDIRE----LS-FAIELLFRLVLLTLNGCKNLERLERTISVLKY 67 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~--~~~~~-------~~~l~~----lp-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 67 (169)
++|++|++++|...+..|..+ ..+.. .+.+.. ++ ..+..+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 357778887776444555443 11111 111221 11 12345667777777765443344455566677
Q ss_pred CCEEeeCCcccccc--cc--cccCCCCCCcEEEecCcccCCcccc----cccCCCCCeEecCCCcccccCcccccCC---
Q 030892 68 LSTLKLSGLLKFRE--FP--EKTSSKDQLLEIHLEGTAIRGLPAS----IELLSGNVLLNLKDCKNLKSLPSTTNGL--- 136 (169)
Q Consensus 68 l~~l~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~l~~~~~~----~~~l~~L~~l~l~~~~~l~~~~~~~~~l--- 136 (169)
|++|++++|..... ++ ..++.+++|++|++++|+++.++.. +..+++|+.|++++|......|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777543321 11 2224555666666666665544331 3445566666666533222224433333
Q ss_pred CCCceEeccCCcCCcccCcc
Q 030892 137 RSLRMLHLSGCSKLKNVPET 156 (169)
Q Consensus 137 ~~L~~L~l~~~~~~~~~p~~ 156 (169)
++|++|++++| .++.+|..
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~~ 269 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPKG 269 (310)
T ss_dssp TTCCCEECCSS-CCCSCCSC
T ss_pred CcCCEEECCCC-CCCchhhh
Confidence 45555555553 23344443
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=119.32 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=113.9
Q ss_pred EEeccCCcCCcccCchHHhhc----cCCChhcc-chhhhcccccceeeecCccccccc-hhhccCCCCCCEEeeCCcccc
Q 030892 6 TLVLSGCLKLKKFPDIVQVLG----DRTDIREL-SFAIELLFRLVLLTLNGCKNLERL-ERTISVLKYLSTLKLSGLLKF 79 (169)
Q Consensus 6 ~l~ls~~~~l~~~p~~~~~~~----~~~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~ 79 (169)
..+.+++. ++.+|.....+. ..+.++.+ |..|.++++|++|++++|.....+ |..+..+++|++|++++|...
T Consensus 8 ~~dcs~~~-L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 8 IAFYRFCN-LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEEESCCC-SSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEEccCCC-CCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 46666555 788887222211 23456665 457889999999999998666666 667888999999999997655
Q ss_pred cccccccCCCCCCcEEEecCcccCC-cccc--cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCc
Q 030892 80 REFPEKTSSKDQLLEIHLEGTAIRG-LPAS--IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPE 155 (169)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~ 155 (169)
...|..++++++|++|++++|++.+ .+.. ++++++|+.|++++|......+ ..++++++|++|++++|......+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 5557889999999999999998886 4543 7889999999999854433333 4688999999999999766555666
Q ss_pred ccCCc
Q 030892 156 TLGKV 160 (169)
Q Consensus 156 ~~~~l 160 (169)
.++.+
T Consensus 167 ~l~~l 171 (844)
T 3j0a_A 167 ELEPL 171 (844)
T ss_dssp GGHHH
T ss_pred Hcccc
Confidence 66554
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.2e-14 Score=112.80 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=61.9
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
+..+++|+.|++++| .+..++ .+..+++|+.|++++|. +..+ +.+..+++|+.|++++|++..+ ..+..+++|+.
T Consensus 83 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSE
T ss_pred hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCE
Confidence 555666666666664 333333 35556666666666643 2222 2355555666666666665555 34455566666
Q ss_pred EecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 118 LNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 118 l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
|++++| .+..++. +..+++|+.|++++|. +..+| .+..+++|+.
T Consensus 158 L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 158 LSLEDN-QISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDV 201 (605)
T ss_dssp EECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSE
T ss_pred EECcCC-cCCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCE
Confidence 666653 3333333 5555666666666642 23332 3444444443
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=4.7e-15 Score=98.13 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcc-cccceeeecCccccccchhhccCCCCCCEEeeCCccccc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELL-FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFR 80 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 80 (169)
++|++|++++|. ++.+| . +..+ ++|++|++++| .++.+ ..+..+++|++|++++|. +.
T Consensus 19 ~~L~~L~l~~n~-l~~i~----------------~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~ 77 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVIE----------------N-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-IC 77 (176)
T ss_dssp TSCEEEECTTSC-CCSCC----------------C-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CC
T ss_pred CCceEEEeeCCC-CchhH----------------H-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-cc
Confidence 467777777775 33222 2 2223 37888888885 44444 456777888888888854 44
Q ss_pred ccccc-cCCCCCCcEEEecCcccCCccc--ccccCCCCCeEecCCCcccccCccc----ccCCCCCceEeccCCcC
Q 030892 81 EFPEK-TSSKDQLLEIHLEGTAIRGLPA--SIELLSGNVLLNLKDCKNLKSLPST----TNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 81 ~~~~~-~~~~~~L~~L~l~~~~l~~~~~--~~~~l~~L~~l~l~~~~~l~~~~~~----~~~l~~L~~L~l~~~~~ 149 (169)
.+|.. +..+++|++|++++|++..+|. .+..+++|+.+++++| .+..+|.. +..+++|+.+++++|..
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55543 3677888888888888877776 6777888888888874 45566653 67778888888877543
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1.8e-14 Score=108.62 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=97.4
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
+++|++|++++|. ++.+|. +..+. ..+.++.+| +..+++|++|++++|. ++.++ +..+++|++|++
T Consensus 41 l~~L~~L~Ls~n~-l~~~~~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSC-CCCCTT-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCC-cccChh-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 3678999999886 666663 32211 123344554 6778888888888854 44444 677888888888
Q ss_pred CCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCccc
Q 030892 74 SGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNV 153 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 153 (169)
++|. +..++ ++.+++|++|++++|+++.++ ++.+++|+.+++++|..++.+ .+..+++|+.|++++| .++.+
T Consensus 114 ~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l 185 (457)
T 3bz5_A 114 DTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITEL 185 (457)
T ss_dssp CSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCC
T ss_pred CCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-cccee
Confidence 8854 44454 777888888888888887764 566777777777776555555 2556667777777764 33334
Q ss_pred CcccCCccchhh
Q 030892 154 PETLGKVESLEV 165 (169)
Q Consensus 154 p~~~~~l~~L~~ 165 (169)
| ++.++.|++
T Consensus 186 ~--l~~l~~L~~ 195 (457)
T 3bz5_A 186 D--VSQNKLLNR 195 (457)
T ss_dssp C--CTTCTTCCE
T ss_pred c--cccCCCCCE
Confidence 4 444444443
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=1.1e-14 Score=113.00 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=83.8
Q ss_pred hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccc-cccccCCCCCCcEEEecCcccCCc-ccccccCCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRE-FPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSG 114 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~ 114 (169)
.+..+++++.+++++|......+..+..++.++.+++++|..... .|..+..+++|++|++++|+++++ |..+.++++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 344556666666666544444445556677777777777654443 456677777788888888877775 455777778
Q ss_pred CCeEecCCCcccccC-cccccCCCCCceEeccCCcCCcccCcccCCc-cchhhh
Q 030892 115 NVLLNLKDCKNLKSL-PSTTNGLRSLRMLHLSGCSKLKNVPETLGKV-ESLEVR 166 (169)
Q Consensus 115 L~~l~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l-~~L~~l 166 (169)
|+.|++++| .++.+ +..+.++++|++|++++|......|+.+..+ ++|++|
T Consensus 520 L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 520 LQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred CCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 888888774 44444 4567777788888888766555556666655 355543
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=3.7e-16 Score=113.04 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=117.6
Q ss_pred CCCcEEeccCCcCCcccCchHHh--------hccCCChhc--cchhhhcccccceeeecCccccccchhhccCCCCCCEE
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV--------LGDRTDIRE--LSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTL 71 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~--------~~~~~~l~~--lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 71 (169)
++++.+++++|..-+..+. +.. +..+ .+.. ++..+..+++|++|++++|......+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4567777777653333332 111 1111 1222 56667888999999999976555667778889999999
Q ss_pred eeCCcccccc--cccccCCCCCCcEEEecCc-ccCC--cccccccCC-CCCeEecCCCc-cc--ccCcccccCCCCCceE
Q 030892 72 KLSGLLKFRE--FPEKTSSKDQLLEIHLEGT-AIRG--LPASIELLS-GNVLLNLKDCK-NL--KSLPSTTNGLRSLRML 142 (169)
Q Consensus 72 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~l~-~L~~l~l~~~~-~l--~~~~~~~~~l~~L~~L 142 (169)
++++|..+.. ++..+..+++|++|++++| .++. ++..+..++ +|+.|++++|. .+ ..++..+.++++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 9999855553 5566778899999999999 8875 566678888 99999999874 33 4456667789999999
Q ss_pred eccCCcCC-cccCcccCCccchhhh
Q 030892 143 HLSGCSKL-KNVPETLGKVESLEVR 166 (169)
Q Consensus 143 ~l~~~~~~-~~~p~~~~~l~~L~~l 166 (169)
++++|..+ ...+..++.+++|++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 99998744 4666778888877765
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=107.36 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCCCcEEeccCCcCCcccCchHHh-hcc----------CCChhccc-hhhhcccccceeeecCcccccc--ch--hhccC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQV-LGD----------RTDIRELS-FAIELLFRLVLLTLNGCKNLER--LE--RTISV 64 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~-~~~----------~~~l~~lp-~~~~~l~~L~~l~l~~~~~~~~--~~--~~~~~ 64 (169)
+++|++|++++|......|..... +.. .+.+..++ ..+..+++|++|++++|...+. ++ ..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 367899999988854444422211 111 33444555 4678899999999999754432 32 22367
Q ss_pred CCCCCEEeeCCccccccccc----ccCCCCCCcEEEecCcccCCc-ccccccC---CCCCeEecCCCcccccCcccccCC
Q 030892 65 LKYLSTLKLSGLLKFREFPE----KTSSKDQLLEIHLEGTAIRGL-PASIELL---SGNVLLNLKDCKNLKSLPSTTNGL 136 (169)
Q Consensus 65 ~~~l~~l~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~-~~~~~~l---~~L~~l~l~~~~~l~~~~~~~~~l 136 (169)
+++|++|++++|. ++.++. .++.+++|++|++++|++... |..+..+ ++|+.|++++ +.++.+|..+.
T Consensus 196 l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--
T ss_pred CCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--
Confidence 8899999999965 444443 346778999999999999885 7666665 6999999998 56778887664
Q ss_pred CCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 137 RSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 137 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++|+.|++++| .++.+|. +..++.|++|
T Consensus 272 ~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 272 AKLRVLDLSSN-RLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp SCCSCEECCSC-CCCSCCC-TTSCCCCSCE
T ss_pred CCCCEEECCCC-cCCCCch-hhhCCCccEE
Confidence 79999999995 4455554 5666666654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2.9e-14 Score=110.73 Aligned_cols=141 Identities=23% Similarity=0.292 Sum_probs=108.8
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
+++|+.|+|++|. +..+|. +..+. ..+.+..+| .+..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~L 138 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYL 138 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG-GGGCTTCSEEEC
T ss_pred CCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC-CCCCCcc-ccCCCccCEEEC
Confidence 5788999999887 666655 22211 123444555 5788999999999996 4555544 778999999999
Q ss_pred CCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCc
Q 030892 74 SGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
++|. +..+ ..+..+++|+.|++++|++..++. +..+++|+.|++++| .+..++ .+..+++|+.|++++|+...
T Consensus 139 s~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 9965 4444 678889999999999999998766 889999999999985 666675 48889999999999976543
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=5.4e-14 Score=106.12 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=58.7
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++. +..+++|+.|++++|++.+.+. +..+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCE
Confidence 334444445555443 2222222 4445555555555533 222222 4455556666666665555433 445566666
Q ss_pred EecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 118 LNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 118 l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
|++++| .+..++ .+..+++|+.|++++|...+..| ++.++.|++
T Consensus 336 L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 336 LFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp EECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred eECCCC-ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 666653 344443 35566666666666654433333 455555543
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=9.9e-16 Score=121.26 Aligned_cols=102 Identities=25% Similarity=0.157 Sum_probs=82.9
Q ss_pred ChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccc
Q 030892 30 DIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI 109 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 109 (169)
.+..+|..++.+++|++|++++| .+..+|..+..+++|++|++++|. +..+|..++.+++|++|++++|.+..+|..+
T Consensus 235 ~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 235 QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSST
T ss_pred CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhh
Confidence 34567776778899999999985 555888888889999999999965 5578888999999999999999998899889
Q ss_pred ccCCCCCeEecCCCcccccCcccc
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPSTT 133 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~~~ 133 (169)
+.+++|+.|++++|......|..+
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hcCCCccEEeCCCCccCCCChHHH
Confidence 999999999999865544555443
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=5.5e-14 Score=105.94 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=16.3
Q ss_pred ccCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
+.+++|+.|++++ +.++.+| +..+++|+.|++++|
T Consensus 209 ~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 209 NQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeCC
Confidence 3444444444444 2333343 444555555555553
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.56 E-value=8.9e-14 Score=104.94 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=46.8
Q ss_pred ccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCce
Q 030892 62 ISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRM 141 (169)
Q Consensus 62 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~ 141 (169)
+..+++|+.|++++|. +..++. +..+++|++|++++|++.+++. +..+++|+.|++++| .+...+. +..+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQR 335 (466)
T ss_dssp GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCE
T ss_pred hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCE
Confidence 3344445555555432 222222 4445555555555555555433 445555666666553 2333322 455566666
Q ss_pred EeccCCcCCcccCcccCCccchhh
Q 030892 142 LHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 142 L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
|++++|. +..+ ..++.+++|++
T Consensus 336 L~l~~n~-l~~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 336 LFFYNNK-VSDV-SSLANLTNINW 357 (466)
T ss_dssp EECCSSC-CCCC-GGGTTCTTCCE
T ss_pred eECCCCc-cCCc-hhhccCCCCCE
Confidence 6666643 2333 24555555544
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=2.4e-14 Score=110.35 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=12.6
Q ss_pred CCCcEEEecCcccCCcccccccCCCCCeEecCC
Q 030892 90 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 122 (169)
Q Consensus 90 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~ 122 (169)
++|++|++++|+++.+|. +. ++|+.|++++
T Consensus 160 ~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CC--TTCCEEECCS
T ss_pred CCcCEEECCCCCCCCcch-hh--CCCCEEECcC
Confidence 344444444444444433 22 4444444444
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=3.9e-14 Score=109.15 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc-------cCCChhc---cchhhhcccccceeeecCccccccchh-hccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRE---LSFAIELLFRLVLLTLNGCKNLERLER-TISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~---lp~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~ 69 (169)
+++|++|++++|...+.+|..+..+. ..+.++. +|..+..+++|+++++++|.....+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 46899999999985554665554321 1234444 345688999999999999765554665 367789999
Q ss_pred EEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCccc-ccCCCCCceEeccCCc
Q 030892 70 TLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPST-TNGLRSLRMLHLSGCS 148 (169)
Q Consensus 70 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 148 (169)
+|++++|......+..+. ++|++|++++|+++.+|..+..+++|+.|++++ +.++.+|.. +..+++|+.+++++|+
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999775555555443 689999999999999998888999999999998 567788876 8899999999999987
Q ss_pred CCc
Q 030892 149 KLK 151 (169)
Q Consensus 149 ~~~ 151 (169)
...
T Consensus 509 ~~c 511 (562)
T 3a79_B 509 WDC 511 (562)
T ss_dssp BCC
T ss_pred cCC
Confidence 554
No 108
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=2.1e-17 Score=111.47 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=95.8
Q ss_pred ChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccc
Q 030892 30 DIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI 109 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 109 (169)
.++++|..+..+++|++|++++| .++.+| .+..+++|++|++++|. +..+|..+..+++|++|++++|++..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 45677778889999999999985 556677 67778999999999954 5567777777788999999999998887 57
Q ss_pred ccCCCCCeEecCCCcccccCcc--cccCCCCCceEeccCCcCCcccC
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPS--TTNGLRSLRMLHLSGCSKLKNVP 154 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p 154 (169)
..+++|+.|++++ +.+..++. .+..+++|+++++++|+.....|
T Consensus 112 ~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 7889999999998 46666553 67889999999999976544433
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=9.1e-15 Score=112.70 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=104.2
Q ss_pred CCCcEEeccCCcCCcccCchHHh-h----ccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQV-L----GDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGL 76 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-~----~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 76 (169)
++|++|++++|. ++.+|. +.. + -..+.++.+|. .+++|+.|++++| .++.+|. .+++|+.|++++|
T Consensus 100 ~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 100 ASLEYLDACDNR-LSTLPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp TTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEEccCCC-CCCcch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCC
Confidence 567777777665 555665 321 1 12344555665 5678888888885 4555665 4788999999996
Q ss_pred ccccccccccCCCCCCcEEEecCcccCCcccccccCCCC-------CeEecCCCcccccCcccccCCCCCceEeccCCcC
Q 030892 77 LKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGN-------VLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L-------~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 149 (169)
. +..+|. +. ++|+.|++++|+++.+|. +.. +| +.|++++ +.++.+|..+..+++|+.|++++|+.
T Consensus 171 ~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 171 Q-LTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp C-CSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred C-CCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 4 555777 55 899999999999999888 544 77 9999998 57888998888899999999999887
Q ss_pred CcccCcccCCcc
Q 030892 150 LKNVPETLGKVE 161 (169)
Q Consensus 150 ~~~~p~~~~~l~ 161 (169)
...+|..+..+.
T Consensus 243 ~~~~p~~l~~l~ 254 (571)
T 3cvr_A 243 SSRIRESLSQQT 254 (571)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHHhh
Confidence 777777666543
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.9e-14 Score=94.65 Aligned_cols=106 Identities=23% Similarity=0.267 Sum_probs=79.9
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEec
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNL 120 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l 120 (169)
+++++|++++| .++.+|..+..+++|+.|++++|......+..+.++++|++|++++|+++.++. .+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46888888884 556777777788888888888855433334668888888888888888888654 5778888888888
Q ss_pred CCCcccccCcc-cccCCCCCceEeccCCcC
Q 030892 121 KDCKNLKSLPS-TTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 121 ~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~ 149 (169)
++ +.++.+|. .+..+++|+.+++++|+.
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88 45666664 577888888888888653
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.3e-14 Score=96.03 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=98.3
Q ss_pred hhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccc-ccCCCCC
Q 030892 38 IELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI-ELLSGNV 116 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~l~~L~ 116 (169)
+..+.+|+.+++++| .++.++......++|++|++++|. +..+ ..+..+++|++|++++|+++.+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 556789999999996 555666533334499999999965 5555 67888999999999999999988654 8899999
Q ss_pred eEecCCCcccccCcc--cccCCCCCceEeccCCcCCcccCcc----cCCccchhhh
Q 030892 117 LLNLKDCKNLKSLPS--TTNGLRSLRMLHLSGCSKLKNVPET----LGKVESLEVR 166 (169)
Q Consensus 117 ~l~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~l 166 (169)
.|++++ +.++.+|. .+..+++|+.|++++|+ +..+|.. ++.++.|+++
T Consensus 92 ~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 92 ELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp EEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred EEECCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 999998 56677876 78899999999999965 4566764 6777777654
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=4.9e-14 Score=103.16 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=101.4
Q ss_pred CChhccchhhhcccccceeeecCccccccch-hhcc-CCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCc
Q 030892 29 TDIRELSFAIELLFRLVLLTLNGCKNLERLE-RTIS-VLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGL 105 (169)
Q Consensus 29 ~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~ 105 (169)
+.++.+|..+. +.++.|++++| .++.++ ..+. .+++|+.|++++|. +..++ ..+..+++|++|++++|++..+
T Consensus 28 ~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 28 QQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp SCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcC
Confidence 45677887543 46899999996 455554 4455 79999999999965 55554 6799999999999999999987
Q ss_pred cc-ccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCccc----CCccchhhh
Q 030892 106 PA-SIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETL----GKVESLEVR 166 (169)
Q Consensus 106 ~~-~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~l 166 (169)
+. .+..+++|+.|++++|......+..+.++++|+.|++++| .+..+|..+ ..+++|+.|
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEE
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEE
Confidence 65 5789999999999995544444678999999999999995 556677543 456666543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=5.4e-14 Score=94.32 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=95.4
Q ss_pred ceeeecCccccccchhhccCCCCCCEEeeCCccccccccc--ccCCCCCCcEEEecCcccCCc-ccccccCCCCCeEecC
Q 030892 45 VLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPE--KTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLK 121 (169)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~l~l~ 121 (169)
+.+++++ +.++.+|..+. .++++|++++|. +..++. .++.+++|++|++++|+++.+ |..+..+++|+.|+++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 6788888 56688887653 489999999964 555553 488999999999999999996 6789999999999999
Q ss_pred CCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 122 DCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 122 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+|......+..+.++++|+.|++++|......|..++.+++|+++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 954434445668899999999999977666668888888888765
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=9.9e-14 Score=107.06 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=89.2
Q ss_pred hccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCc--cccc
Q 030892 32 RELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGL--PASI 109 (169)
Q Consensus 32 ~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~ 109 (169)
+.+|. +..+++|+.|++++| .++.+|..+..+++|+.|++++|. +..+| .++.+++|+.|++++|+++.+ |..+
T Consensus 454 ~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 454 TVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp SSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred CCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 34555 778899999999995 566889889999999999999964 55577 899999999999999999997 8899
Q ss_pred ccCCCCCeEecCCCcccccCccc----ccCCCCCceEec
Q 030892 110 ELLSGNVLLNLKDCKNLKSLPST----TNGLRSLRMLHL 144 (169)
Q Consensus 110 ~~l~~L~~l~l~~~~~l~~~~~~----~~~l~~L~~L~l 144 (169)
+.+++|+.|++++| .+...|.. +..+++|+.|++
T Consensus 530 ~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999995 56555442 334788888864
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.2e-13 Score=97.05 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=89.3
Q ss_pred CChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc
Q 030892 29 TDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS 108 (169)
Q Consensus 29 ~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 108 (169)
+.+++++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. +..++.... ++|++|++++|+++.++ .
T Consensus 51 n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~-~ 123 (263)
T 1xeu_A 51 SNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELRDTD-S 123 (263)
T ss_dssp SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSSCCSBSG-G
T ss_pred CCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCCccCCCh-h
Confidence 3455666 5677788888888874 5555555 7778888888888853 444554333 77888888888887765 4
Q ss_pred cccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 109 IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 109 ~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+..+++|+.|++++ +.++.++ .+..+++|+.|++++|.. ..+ ..++.+++|+.|
T Consensus 124 l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 124 LIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVNWI 177 (263)
T ss_dssp GTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCCEE
T ss_pred hcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCCEE
Confidence 67788888888887 4566665 477888888888888544 334 556777766654
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.7e-13 Score=89.64 Aligned_cols=107 Identities=24% Similarity=0.249 Sum_probs=85.5
Q ss_pred cccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeE
Q 030892 42 FRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLL 118 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l 118 (169)
++++.|++++|. ++.++ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|+++.++.. +..+++|+.|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 589999999964 44554 456789999999999964 55555 5578899999999999999997754 6789999999
Q ss_pred ecCCCcccccCcc-cccCCCCCceEeccCCcCCc
Q 030892 119 NLKDCKNLKSLPS-TTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 119 ~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~ 151 (169)
++++| .++.+|. .+..+++|+++++++|+...
T Consensus 106 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99984 6667765 46789999999999976543
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=2.8e-13 Score=102.07 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=53.5
Q ss_pred hhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc
Q 030892 31 IRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 110 (169)
++.+| .+..+++|+++++++| .++.+|.. ..+|++|++++|. +..+| .++.+++|++|++++|++.++|..
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-- 213 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDL-- 213 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred CCCCc-ccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCC--
Confidence 33444 3555556666666653 33334332 2355555555532 33344 355555666666666655554432
Q ss_pred cCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 111 LLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
.++|+.|++++| .++.+|. ++.+++|++|++++|
T Consensus 214 -~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 214 -PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp -CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS
T ss_pred -cCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC
Confidence 135555555553 3445553 555666666666663
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=91.56 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=94.3
Q ss_pred ceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCC
Q 030892 45 VLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDC 123 (169)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~ 123 (169)
+.++.++ +.++.+|..+ .+++++|++++| .+..+|..+..+++|++|++++|+++.++ ..+.++++|+.|++++|
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5678887 5677888755 468999999995 56678888999999999999999999976 56889999999999995
Q ss_pred cccccCc-ccccCCCCCceEeccCCcCCcccCc-ccCCccchhhh
Q 030892 124 KNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPE-TLGKVESLEVR 166 (169)
Q Consensus 124 ~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l 166 (169)
.++.++ ..+..+++|+.|++++|. +..+|. .+..+++|+.+
T Consensus 89 -~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 89 -RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred -ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence 565554 678999999999999954 556665 57778777654
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=4.1e-13 Score=101.15 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=71.7
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecC
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 121 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~ 121 (169)
++|+++++++| .++.+| .+..+++|++|++++|. +..+|..+ .+|++|++++|++..+| .++.+++|+.++++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 46677777764 334455 36667777777777753 44455432 36777777777777766 46777777778777
Q ss_pred CCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030892 122 DCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 122 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+| .++.+|... ++|++|++++| .+..+|+ ++.++.|++|
T Consensus 204 ~N-~l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L 242 (454)
T 1jl5_A 204 NN-SLKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTI 242 (454)
T ss_dssp SS-CCSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEE
T ss_pred CC-cCCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEE
Confidence 73 455555432 47788888885 4446774 6777766654
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=4.3e-13 Score=104.47 Aligned_cols=107 Identities=24% Similarity=0.229 Sum_probs=46.8
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecC
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 121 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~ 121 (169)
++|+.|++++| .++.+|.. .++|+.|++++| .+..+|.. +++|+.|++++|+++.+| ..+++|+.|+++
T Consensus 181 ~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECC
T ss_pred CCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECC
Confidence 56666666664 33333321 233444444442 22222211 234455555555554444 233445555555
Q ss_pred CCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030892 122 DCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 122 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 164 (169)
+ +.++.+|. .+++|+.|++++| .+..+|..+..+++|+
T Consensus 250 ~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 250 G-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSET 287 (622)
T ss_dssp S-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTC
T ss_pred C-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccC
Confidence 4 23444443 2344555555553 2334454444444443
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=8.2e-15 Score=108.06 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCCCEEeeCCcccc-cccc---cccCCCCCCcEEEecCcccCC------cccccccCCCCCeEecCCCccc----ccCcc
Q 030892 66 KYLSTLKLSGLLKF-REFP---EKTSSKDQLLEIHLEGTAIRG------LPASIELLSGNVLLNLKDCKNL----KSLPS 131 (169)
Q Consensus 66 ~~l~~l~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~~~l~~------~~~~~~~l~~L~~l~l~~~~~l----~~~~~ 131 (169)
++|++|++++|... ..++ ..+..+++|++|++++|++.. .+..+..+++|+.|++++|..- ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555554322 1122 234445556666666665541 2224455566666666654321 33455
Q ss_pred cccCCCCCceEeccCCcC
Q 030892 132 TTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~ 149 (169)
.+..+++|+.|++++|..
T Consensus 239 ~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HGGGCTTCCEEECTTCCC
T ss_pred HHccCCCcCEEECCCCCC
Confidence 555566666666666543
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=6.9e-14 Score=101.98 Aligned_cols=141 Identities=24% Similarity=0.326 Sum_probs=87.5
Q ss_pred CCCCcEEeccCCcCCcccCchHHh---------hccCCChhccch-hhhcc-cccceeeecCccccccchhhccCCCCCC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQV---------LGDRTDIRELSF-AIELL-FRLVLLTLNGCKNLERLERTISVLKYLS 69 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~---------~~~~~~l~~lp~-~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 69 (169)
+++|++|++++|. +..+|..... +..+..+..++. .|..+ ..++.+++++ +.++.++.......+++
T Consensus 103 l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 103 LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEE
T ss_pred ccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchh
Confidence 3567777777665 5555443221 223455556655 34444 3466777777 45556655444456677
Q ss_pred EEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccC
Q 030892 70 TLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSG 146 (169)
Q Consensus 70 ~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 146 (169)
.+++.+++.++.+| ..+..+++|++|++++|+++.+|.. .+.+|+.|.+.+++.++.+|. +..+++|+.+++++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 77777666676676 3567777777777777777777653 245566666666666777774 56677777777665
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=2.4e-14 Score=105.53 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=80.6
Q ss_pred cccceeeecCcccc-ccch---hhccCCCCCCEEeeCCccccc-----ccccccCCCCCCcEEEecCcccC-----Cccc
Q 030892 42 FRLVLLTLNGCKNL-ERLE---RTISVLKYLSTLKLSGLLKFR-----EFPEKTSSKDQLLEIHLEGTAIR-----GLPA 107 (169)
Q Consensus 42 ~~L~~l~l~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~-----~~~~ 107 (169)
++|++|++++|... ..++ ..+..+++|++|++++|.... ..+..+..+++|++|++++|++. .+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67777887775433 2333 345567788888888864321 12336677788888888888873 3667
Q ss_pred ccccCCCCCeEecCCCccccc----Ccccc--cCCCCCceEeccCCcCCc----ccCccc-CCccchhhh
Q 030892 108 SIELLSGNVLLNLKDCKNLKS----LPSTT--NGLRSLRMLHLSGCSKLK----NVPETL-GKVESLEVR 166 (169)
Q Consensus 108 ~~~~l~~L~~l~l~~~~~l~~----~~~~~--~~l~~L~~L~l~~~~~~~----~~p~~~-~~l~~L~~l 166 (169)
.+..+++|+.|++++|..... ++..+ +.+++|+.|++++|.... .+|..+ .++++|++|
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 777788888888887543322 34444 337888888888865544 366655 445555543
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.2e-12 Score=86.52 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=58.6
Q ss_pred ceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCC
Q 030892 45 VLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDC 123 (169)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~ 123 (169)
+.+++++ +.++.+|..+ .+++++|++++|......|..+..+++|++|++++|+++.+|.. +..+++|+.|++++
T Consensus 15 ~~l~~~~-n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~- 90 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND- 90 (174)
T ss_dssp SEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred cEEEeCC-CCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-
Confidence 4555655 3455555544 25666666666443322245566666666666666666666543 45666666666666
Q ss_pred cccccCcc-cccCCCCCceEeccCCc
Q 030892 124 KNLKSLPS-TTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 124 ~~l~~~~~-~~~~l~~L~~L~l~~~~ 148 (169)
+.++.+|. .+..+++|++|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 34555553 36666666666666643
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=2.7e-12 Score=84.79 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=91.3
Q ss_pred cceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecC
Q 030892 44 LVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLK 121 (169)
Q Consensus 44 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~ 121 (169)
.+.++.++ +.++.+|..+ .++++.|++++|. +..++ ..+..+++|++|++++|+++.++.. +..+++|+.|+++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 46777877 4667777654 4789999999965 55555 5678899999999999999997754 6889999999999
Q ss_pred CCcccccCc-ccccCCCCCceEeccCCcCCcccCcc-cCCccchhhh
Q 030892 122 DCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPET-LGKVESLEVR 166 (169)
Q Consensus 122 ~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 166 (169)
+| .++.++ ..+..+++|+.|++++| .++.+|.. +..+++|+++
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEE
Confidence 84 566665 45788999999999996 45566654 5777777654
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.1e-12 Score=102.10 Aligned_cols=107 Identities=24% Similarity=0.270 Sum_probs=86.2
Q ss_pred ccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEec
Q 030892 41 LFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNL 120 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l 120 (169)
+++|+.|++++| .++.+|.. +++|+.|++++| .+..+| ..+++|+.|++++|+++.+|. .+++|+.|++
T Consensus 200 ~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSV 268 (622)
T ss_dssp CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeC
Confidence 468899999985 56666642 578999999996 455566 456889999999999999887 5789999999
Q ss_pred CCCcccccCcccccCCCCCceEeccCCcCCcccCcccCC
Q 030892 121 KDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGK 159 (169)
Q Consensus 121 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 159 (169)
++| .++.+|..+.++++|+.|++++|+.....|..+..
T Consensus 269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 269 YRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 984 67789988999999999999998776655554443
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=4.8e-12 Score=83.18 Aligned_cols=99 Identities=25% Similarity=0.296 Sum_probs=51.1
Q ss_pred ceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCC
Q 030892 45 VLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDC 123 (169)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~ 123 (169)
+.+++++ +.++.+|..+ .+++++|++++|......|..+..+++|++|++++|+++.+|.. +..+++|+.|++++
T Consensus 12 ~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4455555 3444455433 25555666655332222234555555666666666665555433 34556666666655
Q ss_pred cccccCcc-cccCCCCCceEeccCC
Q 030892 124 KNLKSLPS-TTNGLRSLRMLHLSGC 147 (169)
Q Consensus 124 ~~l~~~~~-~~~~l~~L~~L~l~~~ 147 (169)
+.++.++. .+..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 34444443 3555566666666654
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.5e-14 Score=97.39 Aligned_cols=124 Identities=22% Similarity=0.185 Sum_probs=94.9
Q ss_pred hhcccccceeeecCcccc------ccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccccc
Q 030892 38 IELLFRLVLLTLNGCKNL------ERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIEL 111 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 111 (169)
+.....++.++++.+... +.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|++..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 444555555555554333 3344478889999999999964 55577 788889999999999999999988888
Q ss_pred CCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCc--ccCCccchhhh
Q 030892 112 LSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPE--TLGKVESLEVR 166 (169)
Q Consensus 112 l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~l 166 (169)
+++|+.|++++ +.++.+| .+..+++|+.|++++|. +..++. .++.+++|+++
T Consensus 92 ~~~L~~L~L~~-N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 92 ADTLEELWISY-NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHCSEEEEEE-EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred CCcCCEEECcC-CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 89999999998 4677777 57888999999999954 455443 67777777664
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.2e-11 Score=81.35 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=68.0
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCCCeEe
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLN 119 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~ 119 (169)
+++++|++++|......+..+..+++|++|++++|. +..++ ..+..+++|++|++++|+++.++. .+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 578999999964444446778889999999999965 55665 457899999999999999999876 488899999999
Q ss_pred cCCCc
Q 030892 120 LKDCK 124 (169)
Q Consensus 120 l~~~~ 124 (169)
+++|+
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99854
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=2e-11 Score=80.56 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=70.5
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCccccccccc-ccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEe
Q 030892 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPE-KTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLN 119 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~ 119 (169)
++|++|++++|......|..+..+++|++|++++| .+..+|. .+..+++|++|++++|+++.+|.. +..+++|+.++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 68999999996544444677888999999999996 5666764 568899999999999999998865 88899999999
Q ss_pred cCCCcccccCc
Q 030892 120 LKDCKNLKSLP 130 (169)
Q Consensus 120 l~~~~~l~~~~ 130 (169)
+++| .+...+
T Consensus 112 L~~N-~~~c~~ 121 (174)
T 2r9u_A 112 LYNN-PWDCEC 121 (174)
T ss_dssp CCSS-CBCTTB
T ss_pred eCCC-Cccccc
Confidence 9985 444433
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=4.4e-13 Score=98.12 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=91.2
Q ss_pred CCCcEEeccCCcCCcccCc-----hHHhhc-c-------CCChhcc-chhhhcc-----cccceeeecCccccccchhh-
Q 030892 2 KSLKTLVLSGCLKLKKFPD-----IVQVLG-D-------RTDIREL-SFAIELL-----FRLVLLTLNGCKNLERLERT- 61 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~-----~~~~~~-~-------~~~l~~l-p~~~~~l-----~~L~~l~l~~~~~~~~~~~~- 61 (169)
++|++|++++|. ++..+. .+..+. . .+.+... +..+..+ ++|++|++++|......+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 359999999987 666542 222111 1 2233333 3345554 88999999987544444432
Q ss_pred ---ccCC-CCCCEEeeCCcccccccccc----cCC-CCCCcEEEecCcccCC-----cccccccCC-CCCeEecCCCccc
Q 030892 62 ---ISVL-KYLSTLKLSGLLKFREFPEK----TSS-KDQLLEIHLEGTAIRG-----LPASIELLS-GNVLLNLKDCKNL 126 (169)
Q Consensus 62 ---~~~~-~~l~~l~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~l~~-----~~~~~~~l~-~L~~l~l~~~~~l 126 (169)
+..+ ++|++|++++|......+.. +.. .++|++|++++|++.+ ++..+...+ +|+.|++++|..-
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 78999999996643222222 334 3589999999998874 344455555 8999999986443
Q ss_pred ccCcc----cccCC-CCCceEeccCCcCC
Q 030892 127 KSLPS----TTNGL-RSLRMLHLSGCSKL 150 (169)
Q Consensus 127 ~~~~~----~~~~l-~~L~~L~l~~~~~~ 150 (169)
...+. .+... ++|++|++++|...
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33333 33445 58999999996543
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=3.2e-11 Score=87.11 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCCC-eEecCCCcccccCc-ccccCCCCCc
Q 030892 65 LKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNV-LLNLKDCKNLKSLP-STTNGLRSLR 140 (169)
Q Consensus 65 ~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~-~l~l~~~~~l~~~~-~~~~~l~~L~ 140 (169)
+++|+.+++++| .+..++ ..|.++++|+.+++.+| +..++. .|.++++|+ .+++.+ .++.++ .+|.++++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 567777877774 355565 56777888888888776 666653 577778888 888875 455554 5788888888
Q ss_pred eEeccCCcCCcccC-cccCCccchhhh
Q 030892 141 MLHLSGCSKLKNVP-ETLGKVESLEVR 166 (169)
Q Consensus 141 ~L~l~~~~~~~~~p-~~~~~l~~L~~l 166 (169)
.+++++ +.+..++ ..|.++++|+.+
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred EEEeCC-CccCccchhhhcCCcchhhh
Confidence 888877 4455555 467888877765
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.4e-12 Score=95.37 Aligned_cols=162 Identities=16% Similarity=0.077 Sum_probs=102.5
Q ss_pred CCcEEeccCCcCCccc-CchHHhh-cc-----------CCChhccc-hh----hhcc-cccceeeecCccccccchhh--
Q 030892 3 SLKTLVLSGCLKLKKF-PDIVQVL-GD-----------RTDIRELS-FA----IELL-FRLVLLTLNGCKNLERLERT-- 61 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~-p~~~~~~-~~-----------~~~l~~lp-~~----~~~l-~~L~~l~l~~~~~~~~~~~~-- 61 (169)
+|++|++++|. ++.. +..+..+ .. .+.++..+ .. +..+ ++|++|++++|......+..
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 79999999987 4443 4444332 11 22233332 23 3344 79999999997644433333
Q ss_pred --ccC-CCCCCEEeeCCccccc----ccccccCCCC-CCcEEEecCcccCCcc-c----ccccC-CCCCeEecCCCcccc
Q 030892 62 --ISV-LKYLSTLKLSGLLKFR----EFPEKTSSKD-QLLEIHLEGTAIRGLP-A----SIELL-SGNVLLNLKDCKNLK 127 (169)
Q Consensus 62 --~~~-~~~l~~l~l~~~~~~~----~~~~~~~~~~-~L~~L~l~~~~l~~~~-~----~~~~l-~~L~~l~l~~~~~l~ 127 (169)
+.. .++|++|++++|.... .++..+...+ +|++|++++|++.... . .+... ++|+.|++++|. ++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~ 209 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LG 209 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CC
Confidence 333 3699999999975432 2334445555 8999999999997643 2 23344 599999999954 54
Q ss_pred c-----CcccccC-CCCCceEeccCCcCCcccC----cccCCccchhhh
Q 030892 128 S-----LPSTTNG-LRSLRMLHLSGCSKLKNVP----ETLGKVESLEVR 166 (169)
Q Consensus 128 ~-----~~~~~~~-l~~L~~L~l~~~~~~~~~p----~~~~~l~~L~~l 166 (169)
. ++..+.. .++|++|++++|......+ ..+..++.|++|
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 4 4555555 4599999999975544322 234555666554
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=1.3e-12 Score=98.11 Aligned_cols=149 Identities=21% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCCcEEeccCCcCCccc-----CchHH-h--------hccCCChhc-----cchhhhcccccceeeecCccccccchhh
Q 030892 1 MKSLKTLVLSGCLKLKKF-----PDIVQ-V--------LGDRTDIRE-----LSFAIELLFRLVLLTLNGCKNLERLERT 61 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~-----p~~~~-~--------~~~~~~l~~-----lp~~~~~l~~L~~l~l~~~~~~~~~~~~ 61 (169)
+++|++|++++|. ++.. .+.+. . +. .+.++. ++..+..+++|++|++++|......+..
T Consensus 226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 4689999999886 4331 11110 0 11 123333 5666777899999999987543332222
Q ss_pred c-----cCCCCCCEEeeCCcccccc----cccccCCCCCCcEEEecCcccCCc-cccccc-----CCCCCeEecCCCccc
Q 030892 62 I-----SVLKYLSTLKLSGLLKFRE----FPEKTSSKDQLLEIHLEGTAIRGL-PASIEL-----LSGNVLLNLKDCKNL 126 (169)
Q Consensus 62 ~-----~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~-----l~~L~~l~l~~~~~l 126 (169)
+ ...++|+.|++++|..... ++..+..+++|++|++++|++.+. +..+.. .++|+.|++++|..-
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 2 2236899999999764332 355666778999999999988763 232221 579999999986433
Q ss_pred c----cCcccccCCCCCceEeccCCcCCc
Q 030892 127 K----SLPSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 127 ~----~~~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
. .++..+..+++|++|++++|+...
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 2 567778888999999999976543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.23 E-value=7.1e-13 Score=99.57 Aligned_cols=125 Identities=19% Similarity=0.140 Sum_probs=59.8
Q ss_pred ccccceeeecCcccccc----chhhccCCCCCCEEeeCCcccccc----ccccc-CCCCCCcEEEecCcccCC-----cc
Q 030892 41 LFRLVLLTLNGCKNLER----LERTISVLKYLSTLKLSGLLKFRE----FPEKT-SSKDQLLEIHLEGTAIRG-----LP 106 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~l~~-----~~ 106 (169)
+++|++|++++|..... ++..+..+++|++|++++|..... +...+ ...++|++|++++|+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44555555555422211 333344455555555555432111 11111 122456666666665543 23
Q ss_pred cccccCCCCCeEecCCCcccccCcccc----cC-CCCCceEeccCCcCCc----ccCcccCCccchhh
Q 030892 107 ASIELLSGNVLLNLKDCKNLKSLPSTT----NG-LRSLRMLHLSGCSKLK----NVPETLGKVESLEV 165 (169)
Q Consensus 107 ~~~~~l~~L~~l~l~~~~~l~~~~~~~----~~-l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~ 165 (169)
..+..+++|+.|++++|..-...+..+ .. .++|+.|++++|.... .+|..+..+++|++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 344555777777777643222212222 11 4577777777765433 55655555555554
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=1.9e-11 Score=94.50 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=59.0
Q ss_pred cccccceeeecCcccccc----chhhccCCCCCCEEeeCCcccc----cccccccCCCCCCcEEEecCcccCCccccccc
Q 030892 40 LLFRLVLLTLNGCKNLER----LERTISVLKYLSTLKLSGLLKF----REFPEKTSSKDQLLEIHLEGTAIRGLPASIEL 111 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 111 (169)
.+++|++|++++|..... ++.....+++|+.|++++|... ..++..+..+++|+.|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 445555555555432111 1222233455555555553321 12223334455666666666655555544455
Q ss_pred CCCCCeEecCCCc--------------------------ccccCcccccCCCCCceEeccCCcCCcc-cCcccCCccchh
Q 030892 112 LSGNVLLNLKDCK--------------------------NLKSLPSTTNGLRSLRMLHLSGCSKLKN-VPETLGKVESLE 164 (169)
Q Consensus 112 l~~L~~l~l~~~~--------------------------~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~ 164 (169)
+++|+.++++.+. ....+|..+..+++|++|++++|..... ++..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 5555555554211 1122344445566777777777652221 112245555555
Q ss_pred hh
Q 030892 165 VR 166 (169)
Q Consensus 165 ~l 166 (169)
+|
T Consensus 322 ~L 323 (592)
T 3ogk_B 322 VL 323 (592)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=2.9e-10 Score=82.56 Aligned_cols=93 Identities=18% Similarity=0.074 Sum_probs=64.3
Q ss_pred ChhccchhhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc
Q 030892 30 DIRELSFAIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS 108 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 108 (169)
.++.+|. +..+++|+.|++++++.++.++ ..+..+++|+.|++++|......|..|..+++|++|++++|++..+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 5666777 7777788888887534555554 5677788888888888643333345677788888888888888877765
Q ss_pred cccCCCCCeEecCCC
Q 030892 109 IELLSGNVLLNLKDC 123 (169)
Q Consensus 109 ~~~l~~L~~l~l~~~ 123 (169)
......|+.|++.+|
T Consensus 99 ~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLSLQELVLSGN 113 (347)
T ss_dssp TTCSCCCCEEECCSS
T ss_pred HcccCCceEEEeeCC
Confidence 433334888888774
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.8e-10 Score=83.70 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=70.7
Q ss_pred eeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCC
Q 030892 46 LLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDC 123 (169)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~ 123 (169)
.++.++++.++.+|. +..+++|+.|++++++.+..++ ..+..+++|++|++++|+++.++ ..|.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 345665336777787 7778888888887534455554 56788888888888888888755 4567888888888887
Q ss_pred cccccCcc-cccCCCCCceEeccCCcC
Q 030892 124 KNLKSLPS-TTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 124 ~~l~~~~~-~~~~l~~L~~L~l~~~~~ 149 (169)
+.+..+|. .+..++ |+.|++.+|+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 56666664 344444 88888887543
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=6.2e-12 Score=97.18 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=12.0
Q ss_pred CCCCcEEeccCCcCCc
Q 030892 1 MKSLKTLVLSGCLKLK 16 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~ 16 (169)
+++|+.|++++|....
T Consensus 65 ~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFA 80 (594)
T ss_dssp CTTCCEEEEECSCGGG
T ss_pred CCCceEEeccCCCchh
Confidence 4678899999886554
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.09 E-value=3.1e-11 Score=93.27 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=75.8
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhccCCChhccchhhh-cccccceeeecCcccccc--chhhccCCCCCCEEeeCCcc
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIE-LLFRLVLLTLNGCKNLER--LERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~ 77 (169)
+++|++|++++|. +.. ..+..+. .+++|++|++++|...+. ++.....+++|++|++++|.
T Consensus 104 ~~~L~~L~L~~~~-~~~---------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTD---------------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CTTCCEEEEESCB-CCH---------------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCCCeEEeeCcE-EcH---------------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 3577888888775 221 1122222 466777777777754443 33333457777888877765
Q ss_pred ccc----ccccccCCCCCCcEEEecCcc--cCC--cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030892 78 KFR----EFPEKTSSKDQLLEIHLEGTA--IRG--LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 78 ~~~----~~~~~~~~~~~L~~L~l~~~~--l~~--~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
... .++.....+++|+.|+++++. +.. ++.....+++|+.|++++|..++.++..+..+++|++|+++.+
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 211 122333456677778777775 221 2222344677777777776555556666666677777765543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.08 E-value=6e-11 Score=91.67 Aligned_cols=89 Identities=12% Similarity=-0.030 Sum_probs=41.0
Q ss_pred chhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccc---cccccccCCCCCCcEEEecCcccCCccccccc
Q 030892 35 SFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKF---REFPEKTSSKDQLLEIHLEGTAIRGLPASIEL 111 (169)
Q Consensus 35 p~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 111 (169)
+..+..+++|+.|++++|. ...++..+..+++|+.++++.+... ...+..+..+++|+.++++++....+|..+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~ 291 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291 (592)
T ss_dssp HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhh
Confidence 3344566677777777643 3334444455555666655432211 11112333344444444444333334444444
Q ss_pred CCCCCeEecCCCc
Q 030892 112 LSGNVLLNLKDCK 124 (169)
Q Consensus 112 l~~L~~l~l~~~~ 124 (169)
+++|+.|++++|.
T Consensus 292 ~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 292 AAQIRKLDLLYAL 304 (592)
T ss_dssp GGGCCEEEETTCC
T ss_pred cCCCcEEecCCCc
Confidence 4555555555443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=2.4e-09 Score=77.25 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=81.6
Q ss_pred ccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCc-EEEecCcccCCcc-cccccCCCCC
Q 030892 41 LFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLL-EIHLEGTAIRGLP-ASIELLSGNV 116 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~l~~~~-~~~~~l~~L~ 116 (169)
+++|+.+++++| .++.++. .|..+.+|+.+++..+ ++.++ ..|.++++|+ .+++.+ ++..++ ..|.++++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 789999999984 5666664 6788999999999984 66676 6889999999 999998 787776 5688999999
Q ss_pred eEecCCCcccccCc-ccccCCCCCceEec
Q 030892 117 LLNLKDCKNLKSLP-STTNGLRSLRMLHL 144 (169)
Q Consensus 117 ~l~l~~~~~l~~~~-~~~~~l~~L~~L~l 144 (169)
.+++.+ +.++.++ .+|.++++|+.+..
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 999987 5666665 58999999998763
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=1.9e-10 Score=84.54 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=77.6
Q ss_pred cccccceeeecCccccccchhh----c-cCCCCCCEEeeCCccccc----ccccccCCCCCCcEEEecCcccCC-----c
Q 030892 40 LLFRLVLLTLNGCKNLERLERT----I-SVLKYLSTLKLSGLLKFR----EFPEKTSSKDQLLEIHLEGTAIRG-----L 105 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~~~----~-~~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~-----~ 105 (169)
.+++|+.|++++|......... + ...++|+.|++++|.... .++..+...++|++|++++|.+.+ +
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 4668999999997443332222 2 346789999999975322 234455678889999999998865 3
Q ss_pred ccccccCCCCCeEecCCCcccc----cCcccccCCCCCceEeccCCcCCc
Q 030892 106 PASIELLSGNVLLNLKDCKNLK----SLPSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 106 ~~~~~~l~~L~~l~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
...+...++|+.|++++|..-. .+...+...++|++|++++|..-.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4456677899999999864322 233445567889999999976543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=2e-10 Score=84.40 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=89.2
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhh-cccccceeeecCccccccchhhc-cCCCCCCEEeeCCcccc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIE-LLFRLVLLTLNGCKNLERLERTI-SVLKYLSTLKLSGLLKF 79 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~-~l~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~ 79 (169)
++|+.|++++|. ++... ...+...+. ..++|+.|++++|.........+ ..+++++.|++++|...
T Consensus 72 ~~L~~L~Ls~n~-l~~~~-----------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVK-----------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSC-CCHHH-----------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCC-CCHHH-----------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 568888888877 33211 011222222 23689999999975433322223 34568999999997543
Q ss_pred ccc----cccc-CCCCCCcEEEecCcccCC-----cccccccCCCCCeEecCCCccccc-----CcccccCCCCCceEec
Q 030892 80 REF----PEKT-SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDCKNLKS-----LPSTTNGLRSLRMLHL 144 (169)
Q Consensus 80 ~~~----~~~~-~~~~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~l~l~~~~~l~~-----~~~~~~~l~~L~~L~l 144 (169)
... ...+ ...++|++|++++|.+.. ++..+...++|+.|++++|. ++. +...+...++|+.|++
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC
Confidence 221 1222 346789999999998865 34455678899999999964 432 3455677889999999
Q ss_pred cCCcCCc
Q 030892 145 SGCSKLK 151 (169)
Q Consensus 145 ~~~~~~~ 151 (169)
++|..-.
T Consensus 219 s~N~i~~ 225 (372)
T 3un9_A 219 AYNGAGD 225 (372)
T ss_dssp CSSCCCH
T ss_pred CCCCCCH
Confidence 9976543
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=3.9e-08 Score=72.92 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhcc------CCChhccch-hhhcccccceeeecC
Q 030892 1 MKSLKTLVLSGCLKLKKFPDIVQVLGD------RTDIRELSF-AIELLFRLVLLTLNG 51 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~------~~~l~~lp~-~~~~l~~L~~l~l~~ 51 (169)
+++|+.+++++|. +..+|...+.... -.+++.++. .|.++++|+.+.+..
T Consensus 179 c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 179 CYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred cccCCeeecCCCc-ceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 4678888888665 6666665544111 122344444 566677777777764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=3.9e-07 Score=67.61 Aligned_cols=130 Identities=11% Similarity=0.130 Sum_probs=65.9
Q ss_pred hhccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecC---------
Q 030892 31 IRELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEG--------- 99 (169)
Q Consensus 31 l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~--------- 99 (169)
++.++. .|.+|++|+.+++.. +.++.++.....+.+|+.+.+.. + ++.++ ..|.++++|+.+.+..
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a 244 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA 244 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCTTCCEECTTT
T ss_pred ccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCCCccCccccc
Confidence 344443 566777777777765 34444433222234455554443 1 22332 3344444444444433
Q ss_pred ------------cccCCcc-cccccCCCCCeEecCCCcccc-----cCc-ccccCCCCCceEeccCCcCCcccC-cccCC
Q 030892 100 ------------TAIRGLP-ASIELLSGNVLLNLKDCKNLK-----SLP-STTNGLRSLRMLHLSGCSKLKNVP-ETLGK 159 (169)
Q Consensus 100 ------------~~l~~~~-~~~~~l~~L~~l~l~~~~~l~-----~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~ 159 (169)
+++..++ ..|.++++|+.+.+.++ ... .++ .+|.++++|+.+++.+ .++.++ ..|..
T Consensus 245 F~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~ 321 (401)
T 4fdw_A 245 FRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG 321 (401)
T ss_dssp TTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT
T ss_pred cccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC
Confidence 2244443 34566677777776552 222 232 4567777777777764 244444 35666
Q ss_pred ccchhhh
Q 030892 160 VESLEVR 166 (169)
Q Consensus 160 l~~L~~l 166 (169)
+.+|+.+
T Consensus 322 c~~L~~l 328 (401)
T 4fdw_A 322 NRKVTQL 328 (401)
T ss_dssp CCSCCEE
T ss_pred CCCccEE
Confidence 6666543
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=5.5e-08 Score=63.83 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCCEEeeCCcccccccc-cccCCCCCCcEEEecCc-ccCCcc-cccccC----CCCCeEecCCCcccccCc-ccccCCCC
Q 030892 67 YLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGT-AIRGLP-ASIELL----SGNVLLNLKDCKNLKSLP-STTNGLRS 138 (169)
Q Consensus 67 ~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~l~~~~-~~~~~l----~~L~~l~l~~~~~l~~~~-~~~~~l~~ 138 (169)
.|+.+++++|. +++.. ..+.++++|+.|++++| .+++-- ..+..+ ++|+.|++++|..++.-. ..+.++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555554 33221 33445555666666555 343311 112221 356666666665554321 23445666
Q ss_pred CceEeccCCcCCcc
Q 030892 139 LRMLHLSGCSKLKN 152 (169)
Q Consensus 139 L~~L~l~~~~~~~~ 152 (169)
|+.|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666655543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1.9e-07 Score=68.30 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCCCcEEEecCcccCC-ccccc---ccCCCCCeEecCCCccccc-----CcccccCCCCCceEeccCCc
Q 030892 88 SKDQLLEIHLEGTAIRG-LPASI---ELLSGNVLLNLKDCKNLKS-----LPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 88 ~~~~L~~L~l~~~~l~~-~~~~~---~~l~~L~~l~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~ 148 (169)
.+++|++|++.+|.+.. .+..+ ..+++|+.|+++.| .++. ++..+.++++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35667777776665543 11111 23566777777653 3322 22233445667777776654
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=1.3e-07 Score=62.11 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=70.5
Q ss_pred ccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccCCC----CCCcEEEecCc-ccCCcc
Q 030892 33 ELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTSSK----DQLLEIHLEGT-AIRGLP 106 (169)
Q Consensus 33 ~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~----~~L~~L~l~~~-~l~~~~ 106 (169)
.+|.....-.+|+.+++++|.....--..+..+++|+.|++++|..+++.. ..+..+ ++|++|++++| ++++--
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 455433333579999999987333334557789999999999998887643 344443 47999999998 577622
Q ss_pred -cccccCCCCCeEecCCCcccccC
Q 030892 107 -ASIELLSGNVLLNLKDCKNLKSL 129 (169)
Q Consensus 107 -~~~~~l~~L~~l~l~~~~~l~~~ 129 (169)
..+..+++|+.|++++|..++..
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHhcCCCCCEEECCCCCCCCch
Confidence 34667899999999999887653
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=9.2e-08 Score=70.00 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=65.6
Q ss_pred cchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccccccccc--CCCCCCcEEEecC--cc------cC
Q 030892 34 LSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKT--SSKDQLLEIHLEG--TA------IR 103 (169)
Q Consensus 34 lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~--~~------l~ 103 (169)
+...+..+|+|+.|.++++... .++. +. .++|+.|++..|.........+ ..+++|+.|+++. +. +.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444556778888888775322 2332 33 7788888887755322222222 2578888888753 11 21
Q ss_pred Cccccc--ccCCCCCeEecCCCcccccCcccc---cCCCCCceEeccCCcCC
Q 030892 104 GLPASI--ELLSGNVLLNLKDCKNLKSLPSTT---NGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 104 ~~~~~~--~~l~~L~~l~l~~~~~l~~~~~~~---~~l~~L~~L~l~~~~~~ 150 (169)
.+...+ ..+++|+.|++.+|......+..+ ..+++|++|+++.|..-
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 222222 246889999888754432222211 34678999999885543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=1.2e-07 Score=62.97 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred chhhhcccccceeeecCcccccc-----chhhccCCCCCCEEeeCCcccccc----cccccCCCCCCcEEEecCcccCC-
Q 030892 35 SFAIELLFRLVLLTLNGCKNLER-----LERTISVLKYLSTLKLSGLLKFRE----FPEKTSSKDQLLEIHLEGTAIRG- 104 (169)
Q Consensus 35 p~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~- 104 (169)
...+...++|+.|++++|..+.. +...+...++|++|++++|..... +.+.+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34566778999999999723332 344566788999999999764321 33455566789999999998876
Q ss_pred ----cccccccCCCCCeEec--CCCccccc-----CcccccCCCCCceEeccCCcC
Q 030892 105 ----LPASIELLSGNVLLNL--KDCKNLKS-----LPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 105 ----~~~~~~~l~~L~~l~l--~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~ 149 (169)
+...+...++|+.|++ ++| .++. +...+...++|++|++++|..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3455667789999999 664 4432 334556678999999999643
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.8e-07 Score=62.04 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCcccccc----chhhccCCCCCCEEeeCCcc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLER----LERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~ 77 (169)
++|++|++++|..++.- ....+...+...++|++|++++|..... +...+...++|++|++++|.
T Consensus 36 ~~L~~L~L~~n~~i~~~-----------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVP-----------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TTCCEEECTTCTTCCHH-----------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCEEEecCCCCCCHH-----------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 56888899887224311 1133445566678899999999754332 34455567889999999975
Q ss_pred cccc----cccccCCCCCCcEEEe--cCcccCC-----cccccccCCCCCeEecCCCc
Q 030892 78 KFRE----FPEKTSSKDQLLEIHL--EGTAIRG-----LPASIELLSGNVLLNLKDCK 124 (169)
Q Consensus 78 ~~~~----~~~~~~~~~~L~~L~l--~~~~l~~-----~~~~~~~l~~L~~l~l~~~~ 124 (169)
.... +.+.+...++|++|++ ++|.+.. +...+...++|+.|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4322 3566777788999999 8888875 33445566899999999853
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=2.8e-06 Score=59.48 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCCCEEeeCCccccc--ccccccCCCCCCcEEEecCcccCCc
Q 030892 65 LKYLSTLKLSGLLKFR--EFPEKTSSKDQLLEIHLEGTAIRGL 105 (169)
Q Consensus 65 ~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~ 105 (169)
+++|+.|++++|.... .++..+..+++|+.|++++|++..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 4455555555533211 1223333445555555555555443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=2.3e-06 Score=59.94 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCCCCCcEEEecCcccCCcc---cccccCCCCCeEecCCCcccccCcccccCCC--CCceEeccCCcCCcccCc------
Q 030892 87 SSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKDCKNLKSLPSTTNGLR--SLRMLHLSGCSKLKNVPE------ 155 (169)
Q Consensus 87 ~~~~~L~~L~l~~~~l~~~~---~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~~~~~p~------ 155 (169)
.++++|+.|++++|++..++ ..+..+++|+.|++++ +.++.+.. +..++ +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45789999999999998754 4567899999999998 56665532 34444 899999999887665552
Q ss_pred -ccCCccchhh
Q 030892 156 -TLGKVESLEV 165 (169)
Q Consensus 156 -~~~~l~~L~~ 165 (169)
.+..+++|+.
T Consensus 245 ~il~~~P~L~~ 255 (267)
T 3rw6_A 245 AIRERFPKLLR 255 (267)
T ss_dssp HHHHHCTTCCE
T ss_pred HHHHHCcccCe
Confidence 2445555543
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.70 E-value=0.00026 Score=52.14 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=74.7
Q ss_pred hhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLS 113 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~ 113 (169)
.|.++.+|+.+.+.. ....+. ..+..+..|+.+.+.. .+..++ ..|.++.+|+.+.+..+ ++.+. .+|.++.
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 566778888888765 223333 3566788888888854 355565 57888889999988764 66654 4577889
Q ss_pred CCCeEecCCCcccccCc-ccccCCCCCceEeccCC
Q 030892 114 GNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGC 147 (169)
Q Consensus 114 ~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~ 147 (169)
+|+.+.+.. .++.+. .+|.++++|+.+++.++
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 999998864 366665 57889999999988874
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.63 E-value=0.00056 Score=49.98 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=71.0
Q ss_pred hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLS 113 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~ 113 (169)
.+..+..|+.+.+.. .++.+.. .+..+.+++.+.+.. .+..++ ..+.++++|+.+.+.++.+..++ ..|.++.
T Consensus 235 ~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCC
Confidence 355666677666654 2444433 455677788887755 244454 56778888888888887777765 4577888
Q ss_pred CCCeEecCCCcccccCc-ccccCCCCCceEeccC
Q 030892 114 GNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSG 146 (169)
Q Consensus 114 ~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 146 (169)
+|+.+.+.. .++.+. .+|.++++|+.+.+..
T Consensus 311 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 888888864 356555 4688888888888754
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.57 E-value=0.00069 Score=49.86 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=80.9
Q ss_pred hhhcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLS 113 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~ 113 (169)
.|..+..++.+..... .++ ..+..+.+|+.+.+..+ ++.++ ..|.++++|+.+++..+ +..++ .+|.++.
T Consensus 271 ~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp TTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccceeccCce----eeccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 3555566665555432 122 24566788888888662 55565 57888899999988754 66665 4577889
Q ss_pred CCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCccchhh
Q 030892 114 GNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165 (169)
Q Consensus 114 ~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 165 (169)
+|+.+.+..+ ++.+. .+|.++++|+.+++..+ ++.+...+.++++|+.
T Consensus 344 ~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 344 SLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred CCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 9999988753 66655 57889999999988753 4455566777777764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.41 E-value=0.0014 Score=48.24 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=71.8
Q ss_pred hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLS 113 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~ 113 (169)
.|.++++|+.+.+.. .++.++. .|..+.+|+.+.+.. .++.+. ..|.++.+|+.+.+..+ ++.+. .+|.++.
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 577889999999974 5666654 577899999999976 256665 67889999999999765 66665 4688999
Q ss_pred CCCeEecCCCcccccCcccccCCCCCceEeccC
Q 030892 114 GNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSG 146 (169)
Q Consensus 114 ~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 146 (169)
+|+.+.+.++.. . ...+..+.+|+.+.+..
T Consensus 358 ~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 358 ALNNIEYSGSRS--Q-WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEESSCHH--H-HHTCBCCCCC-------
T ss_pred CCCEEEECCcee--e-hhhhhccCCCCEEEeCC
Confidence 999999987422 1 24566677788777655
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.40 E-value=0.0025 Score=46.88 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=53.0
Q ss_pred ccCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccC-cccCCcc
Q 030892 85 KTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVP-ETLGKVE 161 (169)
Q Consensus 85 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~ 161 (169)
.+..+.+|+.+.+..+ +..++ .+|.++.+|+.+++.. .++.+. .+|.++++|+.+++..+ +..++ .+|.++.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCC
Confidence 4556677777777654 55554 3567788898888864 366664 57888999999998763 55555 4677777
Q ss_pred chhhh
Q 030892 162 SLEVR 166 (169)
Q Consensus 162 ~L~~l 166 (169)
+|+.+
T Consensus 367 ~L~~i 371 (394)
T 4fs7_A 367 NLKKV 371 (394)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 77653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.0046 Score=45.10 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=80.3
Q ss_pred hcccccceeeecCccccccch-hhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCCCC
Q 030892 39 ELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGN 115 (169)
Q Consensus 39 ~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L 115 (169)
..+.+++.+.+.. .+..++ ..+..+..|+.+.+..+ ++.+. ..+.++.+++.+.+..+ +..++. .+.++.+|
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444555555543 233333 24556778888888662 44554 56778888999888654 555553 57788999
Q ss_pred CeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccC-cccCCccchhhh
Q 030892 116 VLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESLEVR 166 (169)
Q Consensus 116 ~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l 166 (169)
+.+.+.+ ..++.++ .+|.++++|+.+++.. .++.+. .+|.++.+|+.+
T Consensus 289 ~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 289 TKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCC
T ss_pred ccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEE
Confidence 9999976 4566665 5789999999999975 255565 357777777654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0045 Score=38.34 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.3
Q ss_pred EEeeCCccccc--ccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcc
Q 030892 70 TLKLSGLLKFR--EFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKN 125 (169)
Q Consensus 70 ~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~ 125 (169)
.++-++ ..++ .+|..+. +++++|++++|+++.+|.. +..+++|+.+++.+|..
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 555556 4455 6665432 4689999999999998764 67889999999998653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.61 E-value=0.0013 Score=43.81 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=73.3
Q ss_pred hhcccccceeeecCcccccc-----chhhccCCCCCCEEeeCCcccccc----cccccCCCCCCcEEEecCcccCC----
Q 030892 38 IELLFRLVLLTLNGCKNLER-----LERTISVLKYLSTLKLSGLLKFRE----FPEKTSSKDQLLEIHLEGTAIRG---- 104 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~---- 104 (169)
+..-+.|+.|++++++.+.. +...+..-..|+.|++++|..-.. +.+.+..-+.|+.|++++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34457899999987534432 445566778899999999654322 23445556789999999998875
Q ss_pred -cccccccCCCCCeEecCCCc--cccc-----CcccccCCCCCceEeccCC
Q 030892 105 -LPASIELLSGNVLLNLKDCK--NLKS-----LPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 105 -~~~~~~~l~~L~~l~l~~~~--~l~~-----~~~~~~~l~~L~~L~l~~~ 147 (169)
+-+.+..-+.|+.|+++++. .+.. +-+.+..-++|..|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 23345555679999998642 2221 2233455578899998764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.46 E-value=0.0022 Score=42.73 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCCcEEeccCCcCCcccCchHHhhccCCChhccchhhhcccccceeeecCcccccc----chhhccCCCCCCEEeeCCcc
Q 030892 2 KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLER----LERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~ 77 (169)
++|++|+++++..++. ...+.+-+.+..-+.|+.|++++|..... +...+..-+.|+.|++++|.
T Consensus 41 ~~L~~L~L~~nn~igd-----------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSK-----------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCH-----------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCH-----------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3577788876532321 01123444566667899999999754432 33455567889999999965
Q ss_pred cccc----cccccCCCCCCcEEEecCccc---CC-----cccccccCCCCCeEecCCC
Q 030892 78 KFRE----FPEKTSSKDQLLEIHLEGTAI---RG-----LPASIELLSGNVLLNLKDC 123 (169)
Q Consensus 78 ~~~~----~~~~~~~~~~L~~L~l~~~~l---~~-----~~~~~~~l~~L~~l~l~~~ 123 (169)
.... +.+.+..-+.|++|+++++.. .. +.+.+..=+.|..++++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4322 345666667799999986533 32 2233444578888888753
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0094 Score=36.86 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=35.5
Q ss_pred eeeecCccccc--cchhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCccc
Q 030892 46 LLTLNGCKNLE--RLERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAI 102 (169)
Q Consensus 46 ~l~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l 102 (169)
.++-++ +.++ .+|..+ .++++.|++++| .+..++ ..+..+++|+.|++++|.+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 445555 4555 666544 456888888884 455565 4567788888888888855
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.45 E-value=17 Score=20.90 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=17.1
Q ss_pred hhhcccccceeeecCccccccch-hhccCCCCCCEEeeCC
Q 030892 37 AIELLFRLVLLTLNGCKNLERLE-RTISVLKYLSTLKLSG 75 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~ 75 (169)
.|.+|++|+.+.+.. .++.+. ..|..+.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 344555555555543 233332 2344455555555544
Done!