BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030894
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0B|A Chain A, Solution Structure Of The Human Alpha-Hemoglobin
Stabilizing Protein (Ahsp) P30a Mutant
Length = 102
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 58 GEPQERDKALQELRQELNTLANPF 81
>pdb|1Y01|A Chain A, Crystal Structure Of Ahsp Bound To Fe(Ii)
Alpha-Hemoglobin
pdb|1Z8U|A Chain A, Crystal Structure Of Oxidized Alpha Hemoglobin Bound To
Ahsp
pdb|1Z8U|C Chain C, Crystal Structure Of Oxidized Alpha Hemoglobin Bound To
Ahsp
Length = 102
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 58 GEPQERDKALQELRQELNTLANPF 81
>pdb|3OVU|A Chain A, Crystal Structure Of Human Alpha-Haemoglobin Complexed
With Ahsp And The First Neat Domain Of Isdh From
Staphylococcus Aureus
Length = 101
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 57 GEPQERDKALQELRQELNTLANPF 80
>pdb|1XZY|A Chain A, Solution Structure Of The P30-Trans Form Of Alpha
Hemoglobin Stabilizing Protein (Ahsp)
Length = 90
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 58 GEPQERDKALQELRQELNTLANPF 81
>pdb|3IA3|A Chain A, A Cis-Proline In Alpha-Hemoglobin Stabilizing Protein
Directs The Structural Reorganization Of
Alpha-Hemoglobin
pdb|3IA3|C Chain C, A Cis-Proline In Alpha-Hemoglobin Stabilizing Protein
Directs The Structural Reorganization Of
Alpha-Hemoglobin
Length = 91
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 58 GEPQERDKALQELRQELNTLANPF 81
>pdb|1W09|A Chain A, Solution Structure Of The Cis Form Of The Human Alpha-
Hemoglobin Stabilizing Protein (Ahsp)
pdb|1W0A|A Chain A, Solution Structure Of The Trans Form Of The Human Alpha-
Hemoglobin Stabilizing Protein (Ahsp)
Length = 92
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 67 GRVEEATKRLSEIREELETLADPL 90
G +E K L E+R+EL TLA+P
Sbjct: 56 GEPQERDKALQELRQELNTLANPF 79
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 99 KKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKL 158
++ID K G ++RE+K+ALE F K ++ + E E K+RM +
Sbjct: 27 QQIDPFTKAYA-FGFPKIGEKREFKKALEDF-----WKGKITEEQFE--EEMNKLRMYMV 78
Query: 159 EELSKNVELL 168
E KNV+++
Sbjct: 79 ENYRKNVDVI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.318
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,506,659
Number of Sequences: 62578
Number of extensions: 103775
Number of successful extensions: 573
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 73
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)