BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030894
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
Length = 368
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 45 RAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104
R EE+ +RKK + + + R + T +L I++EL+ L D + D+ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 105 NKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKN 164
+ E R E EY A K + K QL L ++ ++E + +KLEEL +
Sbjct: 214 SLEYSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQ 273
Query: 165 VEL 167
+++
Sbjct: 274 LDV 276
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 45 RAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104
R EE+ +RKK + + + R + T +L I++EL+ L D + D+ ++R +ID
Sbjct: 179 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 238
Query: 105 NKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKN 164
+ + R E EY A K + K QL L ++ ++E + KKLEEL +
Sbjct: 239 SLDYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQ 298
Query: 165 VEL 167
+++
Sbjct: 299 LDV 301
>sp|A5PKK7|GORAB_BOVIN RAB6-interacting golgin OS=Bos taurus GN=GORAB PE=2 SV=2
Length = 370
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 45 RAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104
R EE+ +RKK + + + R + T +L I++EL+ L D + D+ ++R +ID
Sbjct: 151 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 210
Query: 105 NKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKN 164
+ + R E EY A K + K QL L ++ ++E + KKLEEL +
Sbjct: 211 SLDYSYARKRFDRAEAEYVTAKLELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQ 270
Query: 165 VEL 167
+++
Sbjct: 271 LDV 273
>sp|Q8BRM2|GORAB_MOUSE RAB6-interacting golgin OS=Mus musculus GN=Gorab PE=1 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 45 RAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104
R EE+ +RKK + + + + + T +L I++EL+ L D + D+ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 105 NKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKN 164
+ E R E EY A K + K QL L ++ ++E + KKLEEL +
Sbjct: 214 SLEYSYARKRFDRAEAEYITAKLDLQRKTETKEQLTEHLCTIIQQNELRKAKKLEELMQQ 273
Query: 165 VEL 167
+++
Sbjct: 274 LDV 276
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 52 ERKKVEVRDKVFAQLGRVEEATKRLSEIREELET----------LADPLRKDVSVVRKKI 101
ERKKVE K+ +L +EE KR+ ++ E + T L L ++V + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 102 DTLNKEL 108
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 52 ERKKVEVRDKVFAQLGRVEEATKRLSEIREELET----------LADPLRKDVSVVRKKI 101
ERKKVE K+ +L +EE KR+ ++ E + T L L ++V + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 102 DTLNKEL 108
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 52 ERKKVEVRDKVFAQLGRVEEATKRLSEIREELET----------LADPLRKDVSVVRKKI 101
ERKKVE K+ +L +EE KR+ ++ E + T L L ++V + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 102 DTLNKEL 108
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 52 ERKKVEVRDKVFAQLGRVEEATKRLSEIREELET----------LADPLRKDVSVVRKKI 101
ERKKVE K+ +L +EE KR+ ++ E + T L L ++V + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 102 DTLNKEL 108
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1
Length = 1969
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 58 VRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQR 117
+R+K+ Q+ +EE R R ++E + D+ V ++ ID + K+ + T +R
Sbjct: 1036 IRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENIDEITKQKHDVETTLKR 1095
Query: 118 KEREYKEALEAFNDKNKEKAQLVSKLMELVSE 149
KE E L N K E +++KL L+ E
Sbjct: 1096 KE----EDLHHTNAKLAENNSIIAKLQRLIKE 1123
>sp|P41508|SMC_MYCHR Chromosome partition protein Smc OS=Mycoplasma hyorhinis GN=smc
PE=1 SV=2
Length = 979
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 69 VEEATKRLSE-IREELETLADPLRKDVSV--VRKKIDTLNKELKPLGLTCQRKEREYKEA 125
VE+ KRLSE + LE ++ D+ + R +D+L KELK LG E++E
Sbjct: 727 VEQNQKRLSEHYKLTLEAASEQYSLDLDIEQARHFVDSLKKELKELGNVNLEAITEFEEV 786
Query: 126 LEAFNDKNKEKAQLV-------SKLMELVSESEKMRMKKLEEL 161
N + +EK Q + SK+ E +S+ +K+ + K E+
Sbjct: 787 ----NQRYQEKKQYIEELTTAKSKIEEAISDLDKIIINKTTEI 825
>sp|C5D695|EZRA_GEOSW Septation ring formation regulator EzrA OS=Geobacillus sp. (strain
WCH70) GN=ezrA PE=3 SV=1
Length = 567
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 50 EIERKKVEVRDKV---FAQLG--RVEEATKRLSEIREELETLADPLRKDV 94
+I+R+ V+ R+K+ +G ++EEA + ++EI+EE++TL D L K+V
Sbjct: 251 QIDREIVQKREKIEQCMQMIGDLQIEEAKQGITEIKEEIDTLYDLLEKEV 300
>sp|P40457|MLP2_YEAST Protein MLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MLP2 PE=1 SV=1
Length = 1679
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 41 LALFRAKEEEIERKKV---EVRDKVFAQLGRV----EEATKRLSEIREELETLADPLRKD 93
+A F EEE+ + V E++ + ++++ ++ +E++++ + +EEL L D L ++
Sbjct: 31 IAKFERSEEEVTKLNVLVDEIKSQYYSRISKLKQLLDESSEQKNTAKEELNGLKDQLNEE 90
Query: 94 VSVVRKKIDTLNKEL 108
S R++ID L K+L
Sbjct: 91 RSRYRREIDALKKQL 105
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 49 EEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKEL 108
E+ E+ K +D++ + +EE K ++ +++++E + L++ +S +ID+LNK+
Sbjct: 754 EDAEKYKTSYQDRINSSFSTIEETEKHIASLKKDIEADENLLKQTIS----EIDSLNKQF 809
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,698,029
Number of Sequences: 539616
Number of extensions: 2110385
Number of successful extensions: 19286
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 1594
Number of HSP's that attempted gapping in prelim test: 15657
Number of HSP's gapped (non-prelim): 4650
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)