Query 030894
Match_columns 169
No_of_seqs 36 out of 38
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 87.9 9.1 0.00031 32.1 11.9 32 80-111 490-521 (597)
2 1fio_A SSO1 protein; four heli 85.9 8.7 0.0003 28.3 10.7 27 79-105 47-73 (196)
3 3oja_B Anopheles plasmodium-re 78.6 4.8 0.00016 33.9 6.4 38 87-124 518-555 (597)
4 3uul_A Utrophin; spectrin repe 72.7 17 0.00059 23.8 7.5 80 35-129 36-115 (118)
5 2dfs_A Myosin-5A; myosin-V, in 71.9 11 0.00038 36.3 7.8 37 68-104 936-972 (1080)
6 1ecm_A Endo-oxabicyclic transi 65.9 2.2 7.4E-05 30.0 1.3 38 86-125 1-41 (109)
7 3uun_A Dystrophin; triple heli 64.6 26 0.00089 22.7 7.4 80 35-129 36-115 (119)
8 1ez3_A Syntaxin-1A; three heli 63.0 34 0.0012 23.5 8.5 29 78-106 47-75 (127)
9 2eqb_B RAB guanine nucleotide 57.1 45 0.0015 24.6 7.0 67 89-162 2-68 (97)
10 3oja_A Leucine-rich immune mol 57.0 82 0.0028 26.0 11.1 55 50-104 378-447 (487)
11 2zqm_A Prefoldin beta subunit 56.8 43 0.0015 22.7 7.7 66 61-126 24-104 (117)
12 2eqb_B RAB guanine nucleotide 53.0 66 0.0022 23.7 7.5 29 110-138 2-30 (97)
13 3vkg_A Dynein heavy chain, cyt 52.2 1.4E+02 0.0049 32.6 12.3 54 88-141 2010-2063(3245)
14 3haj_A Human pacsin2 F-BAR; pa 50.8 1.2E+02 0.004 25.9 12.4 62 91-159 184-245 (486)
15 3pkr_A FLIG, flagellar motor s 47.7 20 0.00068 29.8 4.3 52 57-113 217-268 (279)
16 4fhr_B Flagellar motor switch 47.1 22 0.00075 28.2 4.3 48 57-109 160-207 (216)
17 3na7_A HP0958; flagellar bioge 45.5 1.1E+02 0.0037 24.0 15.7 71 73-143 73-148 (256)
18 4dzo_A Mitotic spindle assembl 43.9 19 0.00066 26.7 3.3 36 92-127 4-39 (123)
19 3na7_A HP0958; flagellar bioge 42.6 1.1E+02 0.0037 24.1 7.6 30 58-87 116-145 (256)
20 3euj_A Chromosome partition pr 41.2 12 0.0004 33.1 2.0 47 69-115 232-286 (483)
21 3pe0_A Plectin; cytoskeleton, 41.2 92 0.0032 24.9 7.1 51 76-129 67-117 (283)
22 1sum_B Phosphate transport sys 40.1 1.1E+02 0.0039 22.7 11.7 101 43-147 44-155 (235)
23 2gtv_X CM, chorismate mutase; 40.1 25 0.00085 25.4 3.3 46 93-138 4-61 (104)
24 3hjl_A Flagellar motor switch 39.5 31 0.0011 29.1 4.3 48 57-109 273-320 (329)
25 2dfs_A Myosin-5A; myosin-V, in 38.3 1.8E+02 0.0061 28.1 9.7 26 91-116 990-1015(1080)
26 2efk_A CDC42-interacting prote 38.1 1.3E+02 0.0045 22.8 14.2 21 112-132 178-198 (301)
27 2ke4_A CDC42-interacting prote 37.8 71 0.0024 22.9 5.4 50 60-109 18-79 (98)
28 2w83_C C-JUN-amino-terminal ki 37.4 1E+02 0.0036 22.1 6.1 41 114-154 10-50 (77)
29 2d8d_A Aroag, phospho-2-dehydr 36.0 13 0.00046 25.0 1.3 52 93-145 4-59 (90)
30 1i84_S Smooth muscle myosin he 34.9 1.2E+02 0.0041 29.0 7.8 12 100-111 879-890 (1184)
31 1s94_A S-syntaxin; three helix 34.6 1.4E+02 0.0046 22.0 8.2 33 76-108 76-108 (180)
32 4etp_A Kinesin-like protein KA 33.6 62 0.0021 27.6 5.2 52 95-146 6-57 (403)
33 3rmi_A Chorismate mutase prote 33.5 19 0.00064 26.0 1.8 40 86-125 5-48 (114)
34 1fxk_A Prefoldin; archaeal pro 32.2 1.1E+02 0.0038 20.3 7.7 64 61-124 19-97 (107)
35 1s94_A S-syntaxin; three helix 32.0 1.5E+02 0.0052 21.7 8.9 88 62-153 48-145 (180)
36 2vkl_A RV0948C/MT0975; helical 30.6 17 0.00059 25.2 1.1 57 89-146 9-69 (90)
37 1jzp_A Skeletal dihydropydrine 28.0 33 0.0011 20.2 1.9 15 43-57 3-17 (26)
38 3lbx_A Spectrin alpha chain, e 28.0 1E+02 0.0036 22.2 5.0 34 93-126 128-161 (161)
39 2efl_A Formin-binding protein 27.7 2E+02 0.0067 21.7 14.2 46 113-158 186-232 (305)
40 1t72_A Phosphate transport sys 27.4 1.8E+02 0.0061 21.1 13.0 99 44-145 49-157 (227)
41 3aco_A Pacsin2, protein kinase 27.4 2.3E+02 0.0079 22.5 7.4 58 91-158 191-251 (350)
42 2i0m_A Phosphate transport sys 27.2 1.8E+02 0.0061 21.1 11.5 99 43-145 44-153 (216)
43 1go4_E MAD1 (mitotic arrest de 24.4 38 0.0013 25.0 2.0 21 90-110 10-30 (100)
44 1ez3_A Syntaxin-1A; three heli 24.2 1.7E+02 0.0059 19.9 9.1 86 62-151 17-112 (127)
45 1ybz_A Chorismate mutase; cons 24.1 30 0.001 24.2 1.4 48 92-139 17-68 (91)
46 3m3w_A Pacsin3, protein kinase 23.5 2E+02 0.0067 23.0 6.3 52 108-159 192-243 (320)
47 3iv1_A Tumor susceptibility ge 22.5 1.2E+02 0.0042 21.4 4.3 58 58-126 12-76 (78)
48 3ljc_A ATP-dependent protease 21.4 2.3E+02 0.0079 21.7 6.1 42 43-84 205-249 (252)
49 3r6n_A Desmoplakin; spectrin r 21.4 2.5E+02 0.0087 24.4 7.0 42 85-129 161-202 (450)
50 2ccy_A Cytochrome C; electron 21.2 52 0.0018 23.5 2.2 44 73-116 68-119 (128)
51 2a1d_D Staphylocoagulase; prot 21.1 4.2E+02 0.014 23.3 9.5 90 74-167 117-225 (329)
52 3oja_A Leucine-rich immune mol 20.7 2.3E+02 0.008 23.2 6.3 37 48-84 362-398 (487)
53 4ioe_A Secreted protein ESXB; 20.4 1.7E+02 0.0058 18.4 5.1 33 81-113 12-44 (93)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.94 E-value=9.1 Score=32.14 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=13.9
Q ss_pred HHHHhhccchhhHHHHHHHHHHhhhhhcccch
Q 030894 80 REELETLADPLRKDVSVVRKKIDTLNKELKPL 111 (169)
Q Consensus 80 reELE~laDP~RKEV~~vRKkID~vNreLKpL 111 (169)
++.+....|.+.+....+.+-+..+-....++
T Consensus 490 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 521 (597)
T 3oja_B 490 LRRYRLPKDGLARSSDNLNKVFTHLKERQAFK 521 (597)
T ss_dssp HHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCccccccCCHHHHHHHHHHHHHhhhhhh
Confidence 33444444555444444444444443333333
No 2
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=85.89 E-value=8.7 Score=28.34 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=13.1
Q ss_pred HHHHHhhccchhhHHHHHHHHHHhhhh
Q 030894 79 IREELETLADPLRKDVSVVRKKIDTLN 105 (169)
Q Consensus 79 IreELE~laDP~RKEV~~vRKkID~vN 105 (169)
++++|+.+.+-+.+=+..++++|..+.
T Consensus 47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~ 73 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKLKNEIKSAQ 73 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444544444443
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.57 E-value=4.8 Score=33.85 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=15.0
Q ss_pred cchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHH
Q 030894 87 ADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKE 124 (169)
Q Consensus 87 aDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKe 124 (169)
..+.-.+.....+.++.-+.+++-+.+.+..=|+.+.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 33333344444444444444443333333333333333
No 4
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=72.73 E-value=17 Score=23.77 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=56.2
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhh
Q 030894 35 DMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLT 114 (169)
Q Consensus 35 e~srsAls~F~aKEEEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~t 114 (169)
+.-+.-+.-+++-+.+|...+-.|..= -+... .|=.-+.|.-.+...|+.+++.+|..-.-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v--------~~~g~-------~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSV--------LQAGN-------QLMTQGTLSDEEEFEIQEQMTLLNARWEALRVE 100 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-------HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-------HHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777777665544322 11222 222234566668889999999999999999999
Q ss_pred HHhhHHHHHHHHHHh
Q 030894 115 CQRKEREYKEALEAF 129 (169)
Q Consensus 115 cqKKEkEYKeaLEAf 129 (169)
|..+.....+||..+
T Consensus 101 ~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 101 SMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.87 E-value=11 Score=36.32 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=12.9
Q ss_pred hhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhh
Q 030894 68 RVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104 (169)
Q Consensus 68 RvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~v 104 (169)
|++++.++...+.+.+..+.+++-+|++.+++.++.+
T Consensus 936 rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555566666666666555443
No 6
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=65.92 E-value=2.2 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=24.9
Q ss_pred ccchhhHHHHHHHHHHhhhhhcccchhh---hHHhhHHHHHHH
Q 030894 86 LADPLRKDVSVVRKKIDTLNKELKPLGL---TCQRKEREYKEA 125 (169)
Q Consensus 86 laDP~RKEV~~vRKkID~vNreLKpLg~---tcqKKEkEYKea 125 (169)
|+|| .++..+|+.||.++++|--|=. .|.++=-+||..
T Consensus 1 M~~~--~~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 1 MTSE--NPLLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 3588999999999999876543 466666666654
No 7
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=64.59 E-value=26 Score=22.72 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=53.9
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhh
Q 030894 35 DMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLT 114 (169)
Q Consensus 35 e~srsAls~F~aKEEEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~t 114 (169)
+.-..-+..+++-+.+|...+-.|.. |-.....| =.-+.|.--+...|+.+++.+|....-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~--------~~~~g~~L-------~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGN--------ILQLGSKL-------IGTGKLSEDEETEVQEQMNLLNSRWECLRVA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777766544432 22222222 1123344456778999999999999999999
Q ss_pred HHhhHHHHHHHHHHh
Q 030894 115 CQRKEREYKEALEAF 129 (169)
Q Consensus 115 cqKKEkEYKeaLEAf 129 (169)
|..+.+...+||..+
T Consensus 101 ~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 101 SMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 8
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=63.02 E-value=34 Score=23.52 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=14.7
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhhhhh
Q 030894 78 EIREELETLADPLRKDVSVVRKKIDTLNK 106 (169)
Q Consensus 78 ~IreELE~laDP~RKEV~~vRKkID~vNr 106 (169)
.++++|+.+.+-..+=...|+.+|..+.+
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554433
No 9
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.05 E-value=45 Score=24.55 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 030894 89 PLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELS 162 (169)
Q Consensus 89 P~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELs 162 (169)
|++++.+..|-+|+.+-.+++- .+.+|+.....+.+-..-+...-...-.+-.|=|=|--.-++|-|
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~-------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSD-------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777766654 455666666666555554444444443333333333333333333
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.03 E-value=82 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhchhHH---------------HHhhHHHHHHHHhhccchhhHHHHHHHHHHhhh
Q 030894 50 EIERKKVEVRDKVFAQLGRVEE---------------ATKRLSEIREELETLADPLRKDVSVVRKKIDTL 104 (169)
Q Consensus 50 EIErkKmeVrekV~aqLGRvEe---------------etkrLa~IreELE~laDP~RKEV~~vRKkID~v 104 (169)
.+.+..-+.+..++...+++|. -.++...+..+++..=+-+++++...+..|+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 4445556677777788888773 344455566666666666777777777666544
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.77 E-value=43 Score=22.73 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=42.8
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHhhccchh---------------hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHH
Q 030894 61 KVFAQLGRVEEATKRLSEIREELETLADPL---------------RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEA 125 (169)
Q Consensus 61 kV~aqLGRvEeetkrLa~IreELE~laDP~---------------RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKea 125 (169)
.+..++..++.+-+.+...-+||+.+.|.. -.=+..|-++++.+...++-|-......++++.+.
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888899999886521 12234456666666666666666555555555544
Q ss_pred H
Q 030894 126 L 126 (169)
Q Consensus 126 L 126 (169)
-
T Consensus 104 k 104 (117)
T 2zqm_A 104 T 104 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.97 E-value=66 Score=23.67 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=10.1
Q ss_pred chhhhHHhhHHHHHHHHHHhhhhhHHHHH
Q 030894 110 PLGLTCQRKEREYKEALEAFNDKNKEKAQ 138 (169)
Q Consensus 110 pLg~tcqKKEkEYKeaLEAfNEKnkEKa~ 138 (169)
|||+.|-+---+|..+-..+.....+...
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKR 30 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444443333344333333333333333
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.18 E-value=1.4e+02 Score=32.63 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=37.6
Q ss_pred chhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 030894 88 DPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVS 141 (169)
Q Consensus 88 DP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~ 141 (169)
.|.|.+++..-+..+.++..|.-.-.....-+.....--+.|++...||..|-.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999988888888888888766666666665555555666666666665543
No 14
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=50.85 E-value=1.2e+02 Score=25.89 Aligned_cols=62 Identities=11% Similarity=0.299 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 030894 91 RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLE 159 (169)
Q Consensus 91 RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLE 159 (169)
.|++.-++.|.+... +.|++-+.+|+.++.+||.-+..=...+..+++-+-+=|..|+..|-
T Consensus 184 ~k~~eK~~~k~~k~~-------~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 184 PEQLKKLQDKIEKCK-------QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR 245 (486)
T ss_dssp SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776666665544 45788899999999999988655444444555555555666666664
No 15
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=47.68 E-value=20 Score=29.83 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=41.3
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhh
Q 030894 57 EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGL 113 (169)
Q Consensus 57 eVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~ 113 (169)
++|++++.-+.. |.=..|++|++.||-.-.++|+..|++|=.+=|.|---|.
T Consensus 217 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~Ge 268 (279)
T 3pkr_A 217 DLTDKFLNNMSS-----RAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGV 268 (279)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 679999888752 4445689999999988899999999999887777654443
No 16
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=47.07 E-value=22 Score=28.23 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=37.1
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhccc
Q 030894 57 EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELK 109 (169)
Q Consensus 57 eVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLK 109 (169)
++|++++.-+. .|.=..|++|++.+|---.++|...||.|=.+=|.|-
T Consensus 160 e~~e~il~nmS-----~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~ 207 (216)
T 4fhr_B 160 ELKEKIFKNMS-----KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLE 207 (216)
T ss_dssp HHHHHHHTTSC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67888887775 2344578999999997677999999999966656553
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=45.55 E-value=1.1e+02 Score=24.04 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=45.7
Q ss_pred HhhHHHHHHHHhhccch-----hhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 030894 73 TKRLSEIREELETLADP-----LRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKL 143 (169)
Q Consensus 73 tkrLa~IreELE~laDP-----~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~L 143 (169)
..|+...+.-|..-.+| +-+|+....++|...+.++..+......++.++.++-+.+.+...+=..+...+
T Consensus 73 ~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 457888888888888888888888888877777766666655554433333333
No 18
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=43.90 E-value=19 Score=26.73 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHH
Q 030894 92 KDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALE 127 (169)
Q Consensus 92 KEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLE 127 (169)
+||+.+++.|.++|+-..-|.+--.+|=.||.+|.-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998888777777777777777776653
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.62 E-value=1.1e+02 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=11.3
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHHHHhhcc
Q 030894 58 VRDKVFAQLGRVEEATKRLSEIREELETLA 87 (169)
Q Consensus 58 VrekV~aqLGRvEeetkrLa~IreELE~la 87 (169)
+-+++...-..+++...+++.+..+|+..-
T Consensus 116 ~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 116 LQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444443333
No 20
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=41.23 E-value=12 Score=33.10 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=27.5
Q ss_pred hHHHHhhHHHHHHHHh------hccchhhHHHHHHHHHHhhhhhccc--chhhhH
Q 030894 69 VEEATKRLSEIREELE------TLADPLRKDVSVVRKKIDTLNKELK--PLGLTC 115 (169)
Q Consensus 69 vEeetkrLa~IreELE------~laDP~RKEV~~vRKkID~vNreLK--pLg~tc 115 (169)
.++-...|.+.|.||- .+.--+|+.+..++++|+.+|+.|+ |.|...
T Consensus 232 ~q~~~~~~~~~r~~~~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~Fg~~~ 286 (483)
T 3euj_A 232 FQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286 (483)
T ss_dssp HHC-----------------CHHHHHHHHHHHHHHHHHHHHHGGGGSSCCBTTEE
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3444467777788876 5667899999999999999999998 666543
No 21
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=41.17 E-value=92 Score=24.95 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHh
Q 030894 76 LSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAF 129 (169)
Q Consensus 76 La~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAf 129 (169)
+..+=++|-..+.|. ...|+.|++.++..-.-|.+.|...+.-+++|++.|
T Consensus 67 v~~~g~~L~~~~hp~---~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 117 (283)
T 3pe0_A 67 LQNAGDRLLREDHPA---RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF 117 (283)
T ss_dssp HHHHHHHHHHSCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445565667775 456889999999999999999999999999988764
No 22
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=40.13 E-value=1.1e+02 Score=22.74 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=65.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHhc---hhHHHHhhHH---HHHHHHhhccchhhHHHHH-HHHHHhh----hhhcccch
Q 030894 43 LFRAKEEEIERKKVEVRDKVFAQLG---RVEEATKRLS---EIREELETLADPLRKDVSV-VRKKIDT----LNKELKPL 111 (169)
Q Consensus 43 ~F~aKEEEIErkKmeVrekV~aqLG---RvEeetkrLa---~IreELE~laDP~RKEV~~-vRKkID~----vNreLKpL 111 (169)
.....+++|.+...++.+.+..-|. -+....+++. .|--.||.+||=... ++. +++..+. .-.+|..+
T Consensus 44 ~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m 122 (235)
T 1sum_B 44 EVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHD-IAKNVLELMEEPPLKPLEDIPAM 122 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCCCSCCSHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHH
Confidence 3456678888888888888875443 3445555543 445699999999876 444 4443332 22345555
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 030894 112 GLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELV 147 (169)
Q Consensus 112 g~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv 147 (169)
+..|. .-++.|++||...+.++|.-|-..-+-+
T Consensus 123 ~~~v~---~~l~~a~~a~~~~d~~~A~~v~~~d~~i 155 (235)
T 1sum_B 123 ANQTS---EMLKFALRMFADVNVEKSFEVCRMDSKV 155 (235)
T ss_dssp HHHHH---HHHHHHHHHHHSCCHHHHTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55554 5789999999999988886655544433
No 23
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=40.06 E-value=25 Score=25.36 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhhccc--------chh---hhHHhhHHHHHHHHH-HhhhhhHHHHH
Q 030894 93 DVSVVRKKIDTLNKELK--------PLG---LTCQRKEREYKEALE-AFNDKNKEKAQ 138 (169)
Q Consensus 93 EV~~vRKkID~vNreLK--------pLg---~tcqKKEkEYKeaLE-AfNEKnkEKa~ 138 (169)
.++.+|++||.++++|- .|= ..|.+.=-+||.... ..+...+|+..
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~v 61 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYI 61 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHH
Confidence 47889999999999987 443 257777778887654 45556666643
No 24
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=39.48 E-value=31 Score=29.13 Aligned_cols=48 Identities=8% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhccc
Q 030894 57 EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELK 109 (169)
Q Consensus 57 eVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLK 109 (169)
++|++++.-+.. |.=..|++|++.||-.-.++|+..+++|=.+=|.|-
T Consensus 273 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 273 DIKQKFLSNMSK-----RAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 679999888752 344568999999998888999999999987766654
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.31 E-value=1.8e+02 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhhhhcccchhhhHH
Q 030894 91 RKDVSVVRKKIDTLNKELKPLGLTCQ 116 (169)
Q Consensus 91 RKEV~~vRKkID~vNreLKpLg~tcq 116 (169)
.+|++..++.+...+++.+-|-..|+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444443
No 26
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=38.11 E-value=1.3e+02 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.4
Q ss_pred hhhHHhhHHHHHHHHHHhhhh
Q 030894 112 GLTCQRKEREYKEALEAFNDK 132 (169)
Q Consensus 112 g~tcqKKEkEYKeaLEAfNEK 132 (169)
.+.|.+-..+|+.++.++|.-
T Consensus 178 ~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 178 SHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999987
No 27
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.80 E-value=71 Score=22.92 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHhchhHHHHhhHHHHHHHHh----------hccchhh--HHHHHHHHHHhhhhhccc
Q 030894 60 DKVFAQLGRVEEATKRLSEIREELE----------TLADPLR--KDVSVVRKKIDTLNKELK 109 (169)
Q Consensus 60 ekV~aqLGRvEeetkrLa~IreELE----------~laDP~R--KEV~~vRKkID~vNreLK 109 (169)
.++++.|.+++.+-.+-..=|+-|+ .||||.- .++..+.++||.+.-+|.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677776666666677665 4688875 456667778887776653
No 28
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.40 E-value=1e+02 Score=22.07 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=34.8
Q ss_pred hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 030894 114 TCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMR 154 (169)
Q Consensus 114 tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlR 154 (169)
....=-+||.+-|+.-|.-|--|-.||.++=||.+|-+-++
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~ 50 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444578999999999999999999999999999987665
No 29
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=35.98 E-value=13 Score=25.02 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhcccchhh---hHHhhHHHHHHHHH-HhhhhhHHHHHHHHHHHH
Q 030894 93 DVSVVRKKIDTLNKELKPLGL---TCQRKEREYKEALE-AFNDKNKEKAQLVSKLME 145 (169)
Q Consensus 93 EV~~vRKkID~vNreLKpLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~LV~~LmE 145 (169)
.+..+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+.. +.++.+
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~v-l~~~~~ 59 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEM-LAYLTA 59 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHH-HHHHHH
Confidence 477899999999999876643 46677777776542 23345566543 344444
No 30
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.91 E-value=1.2e+02 Score=28.99 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.3
Q ss_pred HHhhhhhcccch
Q 030894 100 KIDTLNKELKPL 111 (169)
Q Consensus 100 kID~vNreLKpL 111 (169)
.+..+..++.+|
T Consensus 879 ~l~ele~~l~~L 890 (1184)
T 1i84_S 879 ELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 31
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=34.62 E-value=1.4e+02 Score=22.01 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHhhhhhcc
Q 030894 76 LSEIREELETLADPLRKDVSVVRKKIDTLNKEL 108 (169)
Q Consensus 76 La~IreELE~laDP~RKEV~~vRKkID~vNreL 108 (169)
...++++|+.+.+-..+=...|+++|..+.+..
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666655443
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.64 E-value=62 Score=27.64 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030894 95 SVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMEL 146 (169)
Q Consensus 95 ~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 146 (169)
+.+.=+|..+.+++..|.+....-+.++++.-+-|.+.......|-+.+.||
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666666777777777777788888888887777788888887775
No 33
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=33.53 E-value=19 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccch-hhHHHHHHHHHHhhhhhcccchhh---hHHhhHHHHHHH
Q 030894 86 LADP-LRKDVSVVRKKIDTLNKELKPLGL---TCQRKEREYKEA 125 (169)
Q Consensus 86 laDP-~RKEV~~vRKkID~vNreLKpLg~---tcqKKEkEYKea 125 (169)
|.|| +-.++..+|..||.++++|--|=. .|.++=-+||..
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 445688999999999999876632 455555666653
No 34
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.25 E-value=1.1e+02 Score=20.34 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHhchhHHHHhhHHHHHHHHhhccchh---------------hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHH
Q 030894 61 KVFAQLGRVEEATKRLSEIREELETLADPL---------------RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKE 124 (169)
Q Consensus 61 kV~aqLGRvEeetkrLa~IreELE~laDP~---------------RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKe 124 (169)
.+..++..++.+-+.+...-+||+.+.|.. -.=+..|-++++.+..+++-|-..+...++++.+
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888998886521 1123445566666666666555555555554444
No 35
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=32.00 E-value=1.5e+02 Score=21.75 Aligned_cols=88 Identities=11% Similarity=0.276 Sum_probs=48.7
Q ss_pred HHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhh----------
Q 030894 62 VFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFND---------- 131 (169)
Q Consensus 62 V~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNE---------- 131 (169)
|...|..+..-..+|......+ |+.|- ....++.+|+.+..+++-++..|..+=+..+...+..-.
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~--L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 123 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDI--LSAPQ--TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRI 123 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Confidence 4445555555556666665553 33232 234688889998899999999988887766654443311
Q ss_pred hhHHHHHHHHHHHHHhhHHHHH
Q 030894 132 KNKEKAQLVSKLMELVSESEKM 153 (169)
Q Consensus 132 KnkEKa~LV~~LmELv~ESErl 153 (169)
+..-..-|..+|.++..+--..
T Consensus 124 r~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 124 RKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 1112344556666666554433
No 36
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=30.57 E-value=17 Score=25.18 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHhhhhhcccchhh---hHHhhHHHHHHHHH-HhhhhhHHHHHHHHHHHHH
Q 030894 89 PLRKDVSVVRKKIDTLNKELKPLGL---TCQRKEREYKEALE-AFNDKNKEKAQLVSKLMEL 146 (169)
Q Consensus 89 P~RKEV~~vRKkID~vNreLKpLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~LV~~LmEL 146 (169)
|.-..+..+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.++
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~-vl~~~~~~ 69 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMK-VIERYSEL 69 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHH-HHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHH-HHHHHHHH
Confidence 4445699999999999999876643 46666677776531 2224455654 34444443
No 37
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=27.96 E-value=33 Score=20.24 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=11.9
Q ss_pred hhHhhHHHHHHHHHH
Q 030894 43 LFRAKEEEIERKKVE 57 (169)
Q Consensus 43 ~F~aKEEEIErkKme 57 (169)
+=++++|++.|+||-
T Consensus 3 aqKekeEe~kr~k~~ 17 (26)
T 1jzp_A 3 AQKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889999999854
No 38
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=27.96 E-value=1e+02 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHH
Q 030894 93 DVSVVRKKIDTLNKELKPLGLTCQRKEREYKEAL 126 (169)
Q Consensus 93 EV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaL 126 (169)
....|+.|++.+|..-.-|...|..+-....+||
T Consensus 128 ~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 128 AHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4577888888888888888888888777766664
No 39
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=27.66 E-value=2e+02 Score=21.71 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=27.4
Q ss_pred hhHHhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhHHHHHHHHHH
Q 030894 113 LTCQRKEREYKEALEAFNDK-NKEKAQLVSKLMELVSESEKMRMKKL 158 (169)
Q Consensus 113 ~tcqKKEkEYKeaLEAfNEK-nkEKa~LV~~LmELv~ESErlRmkKL 158 (169)
+.|.+-..+|+.++.++|.- +..=...+..+++-+-.-|.-|...|
T Consensus 186 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~l 232 (305)
T 2efl_A 186 QMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRM 232 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788999999999986 44333344444443334444444443
No 40
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=27.41 E-value=1.8e+02 Score=21.15 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=65.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHhc---hhHHHHhhH---HHHHHHHhhccchhhHHHHHHHHHHhh----hhhcccchhh
Q 030894 44 FRAKEEEIERKKVEVRDKVFAQLG---RVEEATKRL---SEIREELETLADPLRKDVSVVRKKIDT----LNKELKPLGL 113 (169)
Q Consensus 44 F~aKEEEIErkKmeVrekV~aqLG---RvEeetkrL---a~IreELE~laDP~RKEV~~vRKkID~----vNreLKpLg~ 113 (169)
....+++|.+...++++.+..-+. -+....+.+ -.|-..||.+||=...=...+....+. +..+|..++.
T Consensus 49 v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~el~~m~~ 128 (227)
T 1t72_A 49 VIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYVNINFMSE 128 (227)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHH
Confidence 446688888888899888876553 333344443 346679999999988633344444332 3344555555
Q ss_pred hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 030894 114 TCQRKEREYKEALEAFNDKNKEKAQLVSKLME 145 (169)
Q Consensus 114 tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmE 145 (169)
.| ..-++.|++||...+.+.|.-|..+-+
T Consensus 129 ~v---~~ml~~a~~a~~~~d~~~a~~v~~~d~ 157 (227)
T 1t72_A 129 IV---KEMVNDSVISFIQQDTLLAKKVIEKDD 157 (227)
T ss_dssp HH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55 467899999999998887765555443
No 41
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=27.39 E-value=2.3e+02 Score=22.51 Aligned_cols=58 Identities=12% Similarity=0.326 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---hHHHHHHHHHH
Q 030894 91 RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELV---SESEKMRMKKL 158 (169)
Q Consensus 91 RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv---~ESErlRmkKL 158 (169)
.+++.-++.|.+. +.+.|++-..+|..++.++|.-.. ++.+.+..+. -.=|..|...|
T Consensus 191 ~k~~eK~~~k~~k-------~~~~~~~a~~~Y~~~v~~~n~~~~---~~~~~~~~~~~~~Q~lee~Rl~~l 251 (350)
T 3aco_A 191 PEQLKKLQDKIEK-------CKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFF 251 (350)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555444443 334577788999999999998643 3445444443 33444444444
No 42
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=27.23 E-value=1.8e+02 Score=21.06 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHhch---hHHHHhhHHH---HHHHHhhccchhhHHHHHHHHHHhh-----hhhcccch
Q 030894 43 LFRAKEEEIERKKVEVRDKVFAQLGR---VEEATKRLSE---IREELETLADPLRKDVSVVRKKIDT-----LNKELKPL 111 (169)
Q Consensus 43 ~F~aKEEEIErkKmeVrekV~aqLGR---vEeetkrLa~---IreELE~laDP~RKEV~~vRKkID~-----vNreLKpL 111 (169)
.....+++|.+...++.+.+..-|.+ +....+.+.. |--.||.+||=... ++.+=.++.. ...+|.++
T Consensus 44 ~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m 122 (216)
T 2i0m_A 44 LIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQLAPDEEQLHQM 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCCC--CHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCchHHHHHHHH
Confidence 34567888888899999888765543 3444555443 44699999998875 5443333221 11345555
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 030894 112 GLTCQRKEREYKEALEAFNDKNKEKAQLVSKLME 145 (169)
Q Consensus 112 g~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmE 145 (169)
+..|. .-++.|++||...+.+.|.-|..+-+
T Consensus 123 ~~~v~---~~l~~a~~a~~~~d~~~a~~v~~~d~ 153 (216)
T 2i0m_A 123 GKLSL---SMLADLLVAFPLHQASKAISIAQKDE 153 (216)
T ss_dssp HHHHH---HHHHHHHHHGGGTCHHHHHHHHHTHH
T ss_pred HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55554 57899999999999887765555443
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.36 E-value=38 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHhhhhhcccc
Q 030894 90 LRKDVSVVRKKIDTLNKELKP 110 (169)
Q Consensus 90 ~RKEV~~vRKkID~vNreLKp 110 (169)
++-+|..+|++||.+++|-.-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~r 30 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSR 30 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777776433
No 44
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.16 E-value=1.7e+02 Score=19.86 Aligned_cols=86 Identities=16% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHh---hhhh---HH
Q 030894 62 VFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAF---NDKN---KE 135 (169)
Q Consensus 62 V~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAf---NEKn---kE 135 (169)
|+..|..+..-..+|...-+.+ |+.|.. ...++..+|.+..+++-++..|..+=+..+...+.. +.-+ +-
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~--L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 92 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAI--LASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRI 92 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Confidence 3444555555555666666654 566653 446899999999999999999988877766554432 1111 22
Q ss_pred H----HHHHHHHHHHhhHHH
Q 030894 136 K----AQLVSKLMELVSESE 151 (169)
Q Consensus 136 K----a~LV~~LmELv~ESE 151 (169)
+ .-|-.+|.++..+--
T Consensus 93 r~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 2 345566777666543
No 45
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=24.05 E-value=30 Score=24.16 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhhcccchhh---hHHhhHHHHHHHHH-HhhhhhHHHHHH
Q 030894 92 KDVSVVRKKIDTLNKELKPLGL---TCQRKEREYKEALE-AFNDKNKEKAQL 139 (169)
Q Consensus 92 KEV~~vRKkID~vNreLKpLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~L 139 (169)
.++..+|..||.++++|-.|=. .|.++=-+||.+.. ..-...+|+..|
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl 68 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHH
Confidence 3588999999999999876643 46677777886532 233456666544
No 46
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=23.48 E-value=2e+02 Score=23.03 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=32.4
Q ss_pred ccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 030894 108 LKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLE 159 (169)
Q Consensus 108 LKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLE 159 (169)
+.-..+.+.+-..+|..++..||.-...=-+-+..+.+-+-+=|.-|...|-
T Consensus 192 ~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk 243 (320)
T 3m3w_A 192 VGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFK 243 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777799999999999986543233334444444445556666553
No 47
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.51 E-value=1.2e+02 Score=21.42 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=36.9
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHHHH-------hhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHH
Q 030894 58 VRDKVFAQLGRVEEATKRLSEIREEL-------ETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEAL 126 (169)
Q Consensus 58 VrekV~aqLGRvEeetkrLa~IreEL-------E~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaL 126 (169)
+|.+++..+|..--|-.-|..+.+|| +.|-.-+-.|.+.+.|-|+. |+.|+.|...||
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~-----------lk~K~~EL~~~l 76 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL-----------LKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 45556666666666666777777765 45556666777777776653 566666665544
No 48
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=21.42 E-value=2.3e+02 Score=21.75 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=31.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHhchhHHH---HhhHHHHHHHHh
Q 030894 43 LFRAKEEEIERKKVEVRDKVFAQLGRVEEA---TKRLSEIREELE 84 (169)
Q Consensus 43 ~F~aKEEEIErkKmeVrekV~aqLGRvEee---tkrLa~IreELE 84 (169)
.+=.+|-++-+-+.+++.+|..++..---| -..|..|++||-
T Consensus 205 ~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 205 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567777788888999999998877666 345777777774
No 49
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=21.37 E-value=2.5e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=34.3
Q ss_pred hccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHh
Q 030894 85 TLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAF 129 (169)
Q Consensus 85 ~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAf 129 (169)
.-+.|.. ..|+.+++.+|..-.-|-+-|...+.-+++|++++
T Consensus 161 ~~~Hpas---~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 202 (450)
T 3r6n_A 161 LNQHPAS---DKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF 202 (450)
T ss_dssp HTTCTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455654 45788999999999999999999999999998875
No 50
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=21.16 E-value=52 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.2
Q ss_pred HhhHHHHH----HHHhhccchhhHHHHHHHHHH----hhhhhcccchhhhHH
Q 030894 73 TKRLSEIR----EELETLADPLRKDVSVVRKKI----DTLNKELKPLGLTCQ 116 (169)
Q Consensus 73 tkrLa~Ir----eELE~laDP~RKEV~~vRKkI----D~vNreLKpLg~tcq 116 (169)
|+-+..|| ++...+++-++..+..+-.-. +.+-..+.++|++|.
T Consensus 68 s~A~p~IW~~~~~~F~~~~~~~~~aa~~l~~aA~~gd~~~~~a~~~v~~~Ck 119 (128)
T 2ccy_A 68 GETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCK 119 (128)
T ss_dssp CCBCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhHHH
Confidence 66778888 677788888888887766533 555677889999994
No 51
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=21.15 E-value=4.2e+02 Score=23.26 Aligned_cols=90 Identities=24% Similarity=0.406 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHH--------HHHHHHHh-hh-hhHHHH-HHHHH
Q 030894 74 KRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKERE--------YKEALEAF-ND-KNKEKA-QLVSK 142 (169)
Q Consensus 74 krLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkE--------YKeaLEAf-NE-KnkEKa-~LV~~ 142 (169)
.|-..|.+.|..--+-..+|| ++|..-|.+|||....-+.+-.- .-..--|| |. ++++=| .|-++
T Consensus 117 ~rYn~I~~sLK~a~~eF~keV----~~I~~kn~DLK~f~~~~e~ka~~elndL~nei~~Lg~tf~~~~~~~~~a~eL~aK 192 (329)
T 2a1d_D 117 REYNELTESLKSAVKDFEKDV----EKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAK 192 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTSGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcChhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778888888888888888 46788899999998776555321 11122355 43 344444 67777
Q ss_pred HHHHhhHH--------HHHHHHHHHHHHhhhhh
Q 030894 143 LMELVSES--------EKMRMKKLEELSKNVEL 167 (169)
Q Consensus 143 LmELv~ES--------ErlRmkKLEELsK~ies 167 (169)
|==+|+.+ +|++-.+++.|+-.||.
T Consensus 193 LDlIlG~~~~~~ritNeRi~ke~ieDLeSIIDd 225 (329)
T 2a1d_D 193 VDLVLGDEDKPHRISNERIEKEMIKDLESIIED 225 (329)
T ss_dssp HHHHHCCSSSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCccccchHHHHHHHHHHHHHHHHH
Confidence 77778764 89999999999999885
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.69 E-value=2.3e+02 Score=23.25 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHh
Q 030894 48 EEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELE 84 (169)
Q Consensus 48 EEEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE 84 (169)
....++++.+....|..+-.--.+.-.++......+|
T Consensus 362 ~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 3344444444444443333333333344444433333
No 53
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.44 E-value=1.7e+02 Score=18.42 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=22.8
Q ss_pred HHHhhccchhhHHHHHHHHHHhhhhhcccchhh
Q 030894 81 EELETLADPLRKDVSVVRKKIDTLNKELKPLGL 113 (169)
Q Consensus 81 eELE~laDP~RKEV~~vRKkID~vNreLKpLg~ 113 (169)
++|+..|.-++.-...|+-.++.++..+.+|+.
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~ 44 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666667777777777777777753
Done!