Citrus Sinensis ID: 030895

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
cHHHHHHHHHHccHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHc
cHHHHHHHHHHcccHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MRSAFVDIIStrgfrglyaglspTLVEIipyaglqfgtydtFKRWTmdwnrirssntsstgadnnlssFQLFVCGLAAGTCAKLVCHPLDVVKKRFqieglqrhpkygarvEHRAYRNMSDALSRIVQAEGWaglykgivpstvkaapagaVTFVAYEYASDWLESILT
MRSAFVdiistrgfrglyAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSntsstgadnnLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRfqieglqrhpkygarveHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
****FVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIR***********NLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES***
MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRI*************LSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQ*********EHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNR************NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRH********HRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESIL*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
O04619352 Mitochondrial adenine nuc no no 0.917 0.440 0.327 3e-22
Q9DAM5318 Mitochondrial thiamine py no no 0.923 0.490 0.347 1e-20
Q29RM1318 Mitochondrial thiamine py yes no 0.923 0.490 0.329 9e-20
Q9HC21320 Mitochondrial thiamine py yes no 0.857 0.453 0.333 2e-19
Q5IS35320 Mitochondrial thiamine py N/A no 0.857 0.453 0.339 2e-19
Q5NVC1320 Mitochondrial thiamine py yes no 0.798 0.421 0.342 3e-18
Q7T0U6473 Calcium-binding mitochond N/A no 0.786 0.281 0.317 6e-18
Q66L49477 Calcium-binding mitochond no no 0.792 0.280 0.315 2e-17
Q5XHA0473 Calcium-binding mitochond no no 0.786 0.281 0.317 2e-17
Q6NYZ6469 Calcium-binding mitochond no no 0.822 0.296 0.299 3e-17
>sp|O04619|ADNT1_ARATH Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=ADNT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 4   AFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGAD 63
           A   ++   G R LY G  P+++ ++PY GL F  Y++ K W +        N      +
Sbjct: 186 ALATVLREEGPRALYRGWLPSVIGVVPYVGLNFSVYESLKDWLVK------ENPYGLVEN 239

Query: 64  NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKY----GARVEHRAYRNM 119
           N L+      CG  AGT  + + +PLDV+++R Q+ G +         G       Y  M
Sbjct: 240 NELTVVTRLTCGAIAGTVGQTIAYPLDVIRRRMQMVGWKDASAIVTGEGRSTASLEYTGM 299

Query: 120 SDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 164
            DA  + V+ EG+  LYKG+VP++VK  P+ A+ FV YE   D L
Sbjct: 300 VDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVL 344
Mitochondrial adenylate carrier that catalyzes specifically the transport of ATP, ADP and AMP by a counter-exchange mechanism across the inner mitochondrial membrane. Substrate preference in reconstituted proteoliposomes is ATP > AMP > ADP. May play a role in oxidative phosphorylation and be important for the provision of energy required to support growth in heterotrophic tissues.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9DAM5|TPC_MOUSE Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1 Back     alignment and function description
>sp|Q29RM1|TPC_BOVIN Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC21|TPC_HUMAN Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1 Back     alignment and function description
>sp|Q5IS35|TPC_MACFA Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q5NVC1|TPC_PONAB Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0U6|SCM1B_XENLA Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-b PE=2 SV=1 Back     alignment and function description
>sp|Q66L49|SCMC1_DANRE Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|Q5XHA0|SCMC1_XENTR Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|Q6NYZ6|SCM2A_DANRE Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
224107339 339 predicted protein [Populus trichocarpa] 0.887 0.442 0.881 2e-82
224123216 329 predicted protein [Populus trichocarpa] 0.875 0.449 0.868 2e-82
255551717 331 Mitochondrial deoxynucleotide carrier, p 0.863 0.441 0.881 3e-80
356521873 331 PREDICTED: mitochondrial thiamine pyroph 0.958 0.489 0.843 1e-78
356529708 328 PREDICTED: mitochondrial thiamine pyroph 0.976 0.503 0.822 2e-78
356556120 328 PREDICTED: mitochondrial thiamine pyroph 0.976 0.503 0.822 9e-78
363814342 327 uncharacterized protein LOC100805353 [Gl 0.958 0.495 0.843 2e-77
449450672 340 PREDICTED: mitochondrial thiamine pyroph 0.887 0.441 0.804 2e-76
225432282 330 PREDICTED: mitochondrial thiamine pyroph 0.994 0.509 0.804 5e-76
449530798219 PREDICTED: mitochondrial thiamine pyroph 1.0 0.771 0.804 8e-76
>gi|224107339|ref|XP_002314452.1| predicted protein [Populus trichocarpa] gi|222863492|gb|EEF00623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/169 (88%), Positives = 157/169 (92%)

Query: 1   MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSST 60
           MRSAFVDI+ TRGFRGLYAGLSPTLVEI+PYAGLQFGTYDTFKRWTM WN  +SS+TSS 
Sbjct: 171 MRSAFVDIVRTRGFRGLYAGLSPTLVEIVPYAGLQFGTYDTFKRWTMAWNHHKSSSTSSI 230

Query: 61  GADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMS 120
             D+NLSSFQLF+CGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYG RVEHRAYRNM 
Sbjct: 231 STDDNLSSFQLFICGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGGRVEHRAYRNMF 290

Query: 121 DALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESILT 169
           DAL RI+Q EGWAGLYKGIVPSTVKAAPAGAVTFVAYE+ SDWLESILT
Sbjct: 291 DALRRILQTEGWAGLYKGIVPSTVKAAPAGAVTFVAYEFTSDWLESILT 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123216|ref|XP_002330367.1| predicted protein [Populus trichocarpa] gi|222871571|gb|EEF08702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551717|ref|XP_002516904.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] gi|223543992|gb|EEF45518.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356521873|ref|XP_003529575.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|356529708|ref|XP_003533430.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|356556120|ref|XP_003546375.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|363814342|ref|NP_001242812.1| uncharacterized protein LOC100805353 [Glycine max] gi|255637169|gb|ACU18915.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449450672|ref|XP_004143086.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432282|ref|XP_002272682.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier [Vitis vinifera] gi|297736865|emb|CBI26066.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449530798|ref|XP_004172379.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
TAIR|locus:2154374339 AT5G48970 [Arabidopsis thalian 0.988 0.492 0.796 5.5e-70
TAIR|locus:2089453335 AT3G21390 "AT3G21390" [Arabido 1.0 0.504 0.764 2.7e-68
UNIPROTKB|Q6I583355 OSJNBa0009C07.13 "Putative per 0.905 0.430 0.360 1.4e-23
RGD|1359554318 Slc25a19 "solute carrier famil 0.869 0.462 0.373 1.3e-20
MGI|MGI:1914533318 Slc25a19 "solute carrier famil 0.869 0.462 0.367 2.1e-20
UNIPROTKB|Q29RM1318 SLC25A19 "Mitochondrial thiami 0.863 0.459 0.352 4.4e-20
UNIPROTKB|E1C309309 SLC25A19 "Uncharacterized prot 0.869 0.475 0.354 4.4e-20
UNIPROTKB|C8C419318 SLC25A19 "Solute carrier famil 0.863 0.459 0.352 2.5e-19
UNIPROTKB|Q9HC21320 SLC25A19 "Mitochondrial thiami 0.875 0.462 0.345 2.5e-19
UNIPROTKB|E9PF74263 SLC25A19 "Mitochondrial thiami 0.875 0.562 0.345 2.5e-19
TAIR|locus:2154374 AT5G48970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 133/167 (79%), Positives = 144/167 (86%)

Query:     1 MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSST 60
             MRSAFVDII +RG RGLY GL+PTLVEI+PYAGLQFGTYD FKRW MDWNR + S+    
Sbjct:   171 MRSAFVDIIQSRGIRGLYNGLTPTLVEIVPYAGLQFGTYDMFKRWMMDWNRYKLSSKIPI 230

Query:    61 GADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMS 120
               D NLSSFQLF+CGL AGT AKLVCHPLDVVKKRFQIEGLQRHP+YGARVE RAYRNM 
Sbjct:   231 NVDTNLSSFQLFICGLGAGTSAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYRNML 290

Query:   121 DALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESI 167
             D L +I+ +EGW GLYKGIVPSTVKAAPAGAVTFVAYE+ SDWLESI
Sbjct:   291 DGLRQIMISEGWHGLYKGIVPSTVKAAPAGAVTFVAYEFTSDWLESI 337
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0006810 "transport" evidence=ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0030974 "thiamine pyrophosphate transport" evidence=IGI
GO:0090422 "thiamine pyrophosphate transporter activity" evidence=IGI
TAIR|locus:2089453 AT3G21390 "AT3G21390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6I583 OSJNBa0009C07.13 "Putative peroxisomal Ca-dependent solute carrier" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
RGD|1359554 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914533 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RM1 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C309 SLC25A19 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C8C419 SLC25A19 "Solute carrier family 25 member 19" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HC21 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PF74 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00100290
hypothetical protein (339 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 4e-25
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-11
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-08
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 92.3 bits (230), Expect = 4e-25
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 64  NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDAL 123
           + LS     + G  AG  A  V +PLDVVK R Q           A    R Y+ + D  
Sbjct: 1   SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS---------SAAGGSRKYKGILDCF 51

Query: 124 SRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 164
            +I + EG  GLYKG++P+ ++ APA A+ F  YE     L
Sbjct: 52  KKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92

Length = 96
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764 299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752 320 consensus Mitochondrial solute carrier protein [En 99.98
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 99.97
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.97
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.97
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.97
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 99.97
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.96
KOG0757 319 consensus Mitochondrial carrier protein - Rim2p/Mr 99.96
PTZ00168259 mitochondrial carrier protein; Provisional 99.96
KOG0760 302 consensus Mitochondrial carrier protein MRS3/4 [En 99.96
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 99.96
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 99.96
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 99.96
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 99.96
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.96
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.95
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 99.95
KOG0762 311 consensus Mitochondrial carrier protein [Energy pr 99.95
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.95
PTZ00168259 mitochondrial carrier protein; Provisional 99.95
KOG0761 361 consensus Mitochondrial carrier protein CGI-69 [En 99.95
KOG0766297 consensus Predicted mitochondrial carrier protein 99.95
KOG0765333 consensus Predicted mitochondrial carrier protein 99.95
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.94
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.94
KOG0770 353 consensus Predicted mitochondrial carrier protein 99.94
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.94
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.93
KOG0767 333 consensus Mitochondrial phosphate carrier protein 99.93
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.93
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.93
KOG0766 297 consensus Predicted mitochondrial carrier protein 99.93
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.91
KOG0768 323 consensus Mitochondrial carrier protein PET8 [Ener 99.91
KOG0765333 consensus Predicted mitochondrial carrier protein 99.9
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.9
KOG0036463 consensus Predicted mitochondrial carrier protein 99.9
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.9
KOG0036463 consensus Predicted mitochondrial carrier protein 99.9
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.89
KOG0769 308 consensus Predicted mitochondrial carrier protein 99.88
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.86
KOG0770353 consensus Predicted mitochondrial carrier protein 99.86
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.85
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.85
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.83
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.81
KOG0769308 consensus Predicted mitochondrial carrier protein 99.79
KOG2745321 consensus Mitochondrial carrier protein [General f 99.6
KOG1519297 consensus Predicted mitochondrial carrier protein 99.38
KOG1519297 consensus Predicted mitochondrial carrier protein 99.27
KOG2954427 consensus Mitochondrial carrier protein [General f 99.14
KOG2745321 consensus Mitochondrial carrier protein [General f 98.96
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 98.94
KOG2954427 consensus Mitochondrial carrier protein [General f 96.06
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=9.4e-35  Score=212.15  Aligned_cols=149  Identities=40%  Similarity=0.766  Sum_probs=130.5

Q ss_pred             ChhHHHHHHHhhchhhhhccccchhhhhcccchhhHHHHHHHHHH-hhhhhhccccCCCCCCCCCCcChHHHHHHHHHHh
Q 030895            1 MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRW-TMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAG   79 (169)
Q Consensus         1 ~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag   79 (169)
                      |++++++|+++||++|||||+.|++++.+|+.++.|.+||.++++ +..           +..+++.+.+..+++|++||
T Consensus       166 l~~a~~~I~~~eGi~gfYrGl~ptllgi~Pyag~~F~~Yd~lk~~~~~~-----------~~~~~~~~~~~~l~~GalAG  234 (320)
T KOG0752|consen  166 LLHAFKTIYREEGIRGFYRGLGPTLLGIAPYAGINFFAYDTLKKWQYLK-----------SSGNKELSNFERLLCGALAG  234 (320)
T ss_pred             HHHHHHHHHHhcchhhhhcCcchhhheehhhhhhHHHHHHHHHHhhccc-----------ccccchhhhHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999995 211           11225677889999999999


Q ss_pred             HhhhhhhccHHHHHHHHhhccccCCCCCCCcccccccccHHHHHHHHHHhhCccccccchhhhhhhhhhchhhHHHHHHH
Q 030895           80 TCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEY  159 (169)
Q Consensus        80 ~~~~~~~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~~~~~~~~~~~~~ye~  159 (169)
                      +++..+++|+|+||.|||.......      ....+++++++++++|+++||+.|||+|+.|++++.+|..++.|.+||.
T Consensus       235 ~~aqti~yPlD~vRrrmQ~~~~~~~------~~~~~~~~~~~~~~~i~~~EG~~gLYkGl~p~~lK~~P~~ai~F~~Ye~  308 (320)
T KOG0752|consen  235 AVAQTITYPLDTVRRRMQLGGLKYF------GGGFRYKGVLDAFRQIVKTEGVKGLYKGLSPNLLKVVPSVAISFTTYEI  308 (320)
T ss_pred             HHHhhhcccHHHHHHHHhccCcccc------ccccccccHHHHHHHHHHHhhhhhhhccccHHHHHhcccceeeeehHHH
Confidence            9999999999999999999874311      1223468999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 030895          160 ASDWLES  166 (169)
Q Consensus       160 ~k~~~~~  166 (169)
                      +|.++..
T Consensus       309 ~k~~l~~  315 (320)
T KOG0752|consen  309 LKDLLRL  315 (320)
T ss_pred             HHHHhhc
Confidence            9987754

>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
2lck_A 303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-08
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 9e-05
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 5   FVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADN 64
            + ++ T G R LY GL   L   + +A ++ G YD+ K++       + S  +  G+  
Sbjct: 54  ILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-----TKGSEHAGIGSR- 107
Query: 65  NLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALS 124
                   + G   G  A  V  P DVVK RFQ +      + G     R Y++  +A  
Sbjct: 108 -------LLAGSTTGALAVAVAQPTDVVKVRFQAQA-----RAGG---GRRYQSTVEAYK 152
Query: 125 RIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 164
            I + EG  GL+KG  P+  + A       V Y+   D L
Sbjct: 153 TIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-46
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-28
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 5e-19
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 3e-34
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-29
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 3e-20
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  152 bits (387), Expect = 1e-46
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 1   MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSST 60
           + +    I  + G RGLY G + ++  II Y    FG YDT K    D            
Sbjct: 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD------------ 203

Query: 61  GADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMS 120
               N+     ++        A LV +P D V++R  ++        G +     Y    
Sbjct: 204 --PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS-------GRKGADIMYTGTV 254

Query: 121 DALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 164
           D   +I + EG    +KG   + ++    GA   V Y+    ++
Sbjct: 255 DCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKKFV 297
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.98
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.97
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 99.97
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.6e-33  Score=207.61  Aligned_cols=141  Identities=28%  Similarity=0.416  Sum_probs=126.4

Q ss_pred             hhHHHHHHHhhchhhhhccccchhhhhcccchhhHHHHHHHHHHhhhhhhccccCCCCCCCCCCcChHHHHHHHHHHhHh
Q 030895            2 RSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC   81 (169)
Q Consensus         2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~   81 (169)
                      ++++++|+++||++|||||+.|.+++.++..+++|.+||.+++.+.+..            ....+....+++|++||++
T Consensus       148 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------------~~~~~~~~~~~~g~~ag~~  215 (303)
T 2lck_A          148 VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------------LMTDDLPCHFTSAFGAGFC  215 (303)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT------------SCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------CCCCchHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999864321            1234567789999999999


Q ss_pred             hhhhhccHHHHHHHHhhccccCCCCCCCcccccccccHHHHHHHHHHhhCccccccchhhhhhhhhhchhhHHHHHHHHH
Q 030895           82 AKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYAS  161 (169)
Q Consensus        82 ~~~~~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~~~~~~~~~~~~~ye~~k  161 (169)
                      ++++++|+|+||+|+|.+..            ..|.++++++++++++||++|||+|+.++++|.+|.++++|.+||.+|
T Consensus       216 ~~~~~~P~dvvktrlq~~~~------------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k  283 (303)
T 2lck_A          216 TTVIASPVDVVKTRYMNSAL------------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK  283 (303)
T ss_dssp             HHHHHHHHHHHHHHHTTCCS------------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHhccc------------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999751            248999999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 030895          162 DWLES  166 (169)
Q Consensus       162 ~~~~~  166 (169)
                      +.+.+
T Consensus       284 ~~l~~  288 (303)
T 2lck_A          284 RALMA  288 (303)
T ss_dssp             SCCCC
T ss_pred             HHHHH
Confidence            76643
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 9e-14
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 5e-10
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 9e-14
 Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 22/159 (13%)

Query: 1   MRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSST 60
           + +    I  + G RGLY G + ++  II Y    FG YDT K    D   +    +   
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVS--- 211

Query: 61  GADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMS 120
                      ++        A LV +P D V++R  ++        G +     Y    
Sbjct: 212 -----------WMIAQTVTAVAGLVSYPFDTVRRRMMMQS-------GRKGADIMYTGTV 253

Query: 121 DALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEY 159
           D   +I + EG    +KG   + ++    GA   V Y+ 
Sbjct: 254 DCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.96
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.93
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=99.96  E-value=1.5e-29  Score=184.48  Aligned_cols=136  Identities=26%  Similarity=0.460  Sum_probs=119.4

Q ss_pred             hhHHHHHHHhhchhhhhccccchhhhhcccchhhHHHHHHHHHHhhhhhhccccCCCCCCCCCCcChHHHHHHHHHHhHh
Q 030895            2 RSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC   81 (169)
Q Consensus         2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~   81 (169)
                      ++++++++++||+++||+|+.+.+++.+++.+++|..||.+|+.+..              .........++++.+++.+
T Consensus       156 ~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~--------------~~~~~~~~~~~~~~~~~~~  221 (292)
T d1okca_         156 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQTVTAV  221 (292)
T ss_dssp             HHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG--------------GGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccc--------------ccccchHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999986532              1344567788999999999


Q ss_pred             hhhhhccHHHHHHHHhhccccCCCCCCCcccccccccHHHHHHHHHHhhCccccccchhhhhhhhhhchhhHHHHHHH
Q 030895           82 AKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEY  159 (169)
Q Consensus        82 ~~~~~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~~~~~~~~~~~~~ye~  159 (169)
                      ++++++|+|+||+|+|.+...       .....+|.++++++++++++||++|||||+.++++|.+| +++.|++||.
T Consensus       222 a~~~t~P~dvvktR~q~~~~~-------~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~~i~~~~ye~  291 (292)
T d1okca_         222 AGLVSYPFDTVRRRMMMQSGR-------KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE  291 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTC-------CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHT
T ss_pred             HhhccccHHHHHHHHHhcCCC-------CCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-HHhhhhHhhc
Confidence            999999999999999997621       223456899999999999999999999999999999876 6888999996
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure