Query 030897
Match_columns 169
No_of_seqs 127 out of 1476
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 2.3E-18 4.9E-23 141.2 9.8 131 34-164 180-311 (968)
2 PLN00113 leucine-rich repeat r 99.8 3.9E-18 8.5E-23 139.8 10.0 165 1-165 163-336 (968)
3 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.4E-24 115.2 -3.9 156 2-161 33-196 (264)
4 PLN03210 Resistant to P. syrin 99.7 4E-16 8.7E-21 129.6 10.7 152 1-156 633-821 (1153)
5 PLN03210 Resistant to P. syrin 99.6 3.4E-15 7.3E-20 124.1 10.8 54 2-56 657-718 (1153)
6 KOG0617 Ras suppressor protein 99.6 3.8E-17 8.3E-22 106.0 -1.8 135 28-166 42-178 (264)
7 KOG0444 Cytoskeletal regulator 99.6 5.6E-16 1.2E-20 118.0 1.1 162 2-167 103-297 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 6.9E-16 1.5E-20 117.6 -2.8 162 2-166 173-344 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 2.9E-15 6.2E-20 108.5 -2.4 158 3-166 115-302 (565)
10 KOG4194 Membrane glycoprotein 99.4 1.6E-14 3.5E-19 109.0 0.5 127 37-167 312-445 (873)
11 KOG4194 Membrane glycoprotein 99.4 1.5E-13 3.3E-18 103.9 2.6 137 28-166 206-346 (873)
12 KOG0472 Leucine-rich repeat pr 99.3 7.8E-14 1.7E-18 101.2 -1.6 113 34-149 427-540 (565)
13 KOG0618 Serine/threonine phosp 99.3 3.7E-13 8.1E-18 106.0 -0.9 142 1-148 309-487 (1081)
14 KOG0618 Serine/threonine phosp 99.2 1.3E-12 2.8E-17 103.0 -1.7 21 3-24 242-262 (1081)
15 KOG4237 Extracellular matrix p 99.2 2.6E-12 5.6E-17 93.1 -0.2 82 85-167 269-352 (498)
16 KOG0532 Leucine-rich repeat (L 99.2 2.4E-12 5.2E-17 97.1 -1.3 154 6-166 79-239 (722)
17 PRK15370 E3 ubiquitin-protein 99.2 1E-10 2.2E-15 93.3 7.2 116 30-157 252-386 (754)
18 PRK15387 E3 ubiquitin-protein 99.1 1.5E-10 3.2E-15 92.3 6.3 141 2-155 302-463 (788)
19 PRK15387 E3 ubiquitin-protein 99.1 2.4E-10 5.2E-15 91.1 7.4 19 2-21 242-260 (788)
20 PRK15370 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 92.5 6.1 119 28-158 271-408 (754)
21 cd00116 LRR_RI Leucine-rich re 99.1 4.8E-11 1E-15 86.7 2.2 63 86-148 161-232 (319)
22 PF14580 LRR_9: Leucine-rich r 99.1 1.6E-10 3.5E-15 76.6 3.8 106 39-149 16-125 (175)
23 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 75.8 3.5 104 40-146 40-149 (175)
24 PLN03150 hypothetical protein; 99.0 1.1E-09 2.4E-14 86.3 7.7 111 44-154 420-532 (623)
25 cd00116 LRR_RI Leucine-rich re 99.0 2.9E-10 6.2E-15 82.7 3.2 112 38-149 132-262 (319)
26 PLN03150 hypothetical protein; 98.9 2.8E-09 6.1E-14 84.1 6.1 92 68-159 420-512 (623)
27 KOG0532 Leucine-rich repeat (L 98.9 4.4E-11 9.5E-16 90.4 -4.6 157 7-169 55-220 (722)
28 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 80.7 3.7 113 31-146 152-264 (394)
29 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 8E-14 58.2 3.7 56 91-147 2-59 (61)
30 KOG4658 Apoptotic ATPase [Sign 98.8 2.7E-09 5.8E-14 86.6 2.6 106 41-146 544-651 (889)
31 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 76.6 4.7 148 3-155 141-295 (394)
32 KOG4237 Extracellular matrix p 98.7 4.3E-10 9.3E-15 81.9 -2.8 132 30-166 57-193 (498)
33 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3E-14 77.0 -0.3 112 31-147 296-409 (490)
34 PF13855 LRR_8: Leucine rich r 98.7 2.8E-08 6.1E-13 54.6 4.9 56 67-123 2-59 (61)
35 KOG1259 Nischarin, modulator o 98.7 5.9E-09 1.3E-13 73.9 0.6 119 43-167 285-405 (490)
36 KOG3207 Beta-tubulin folding c 98.6 1.6E-08 3.5E-13 74.6 1.8 107 42-149 197-313 (505)
37 KOG1859 Leucine-rich repeat pr 98.5 3.4E-09 7.4E-14 82.7 -3.6 140 1-147 108-264 (1096)
38 KOG4658 Apoptotic ATPase [Sign 98.5 4.7E-08 1E-12 79.6 2.4 122 42-166 523-647 (889)
39 PRK15386 type III secretion pr 98.5 1.3E-06 2.8E-11 65.2 8.3 126 2-147 52-187 (426)
40 KOG3207 Beta-tubulin folding c 98.4 8.5E-08 1.8E-12 70.9 1.9 146 1-148 171-337 (505)
41 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 44.7 3.9 32 91-122 2-33 (44)
42 PF12799 LRR_4: Leucine Rich r 98.3 1.5E-06 3.3E-11 44.3 3.9 40 66-106 1-40 (44)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.1E-13 71.2 -4.5 126 37-164 229-366 (419)
44 KOG1909 Ran GTPase-activating 98.2 7E-07 1.5E-11 64.4 2.3 147 2-149 92-282 (382)
45 KOG4579 Leucine-rich repeat (L 98.0 3.2E-07 6.9E-12 58.0 -2.7 107 44-154 29-139 (177)
46 KOG4579 Leucine-rich repeat (L 98.0 3.8E-07 8.3E-12 57.7 -2.5 89 39-130 50-139 (177)
47 KOG1909 Ran GTPase-activating 98.0 2E-06 4.3E-11 62.1 0.4 40 38-77 88-131 (382)
48 KOG3665 ZYG-1-like serine/thre 97.9 5.7E-06 1.2E-10 66.1 2.4 107 40-148 146-261 (699)
49 KOG2120 SCF ubiquitin ligase, 97.9 5.6E-07 1.2E-11 64.0 -2.9 108 38-147 256-373 (419)
50 KOG3665 ZYG-1-like serine/thre 97.8 8.7E-06 1.9E-10 65.1 2.1 104 42-148 122-231 (699)
51 KOG0531 Protein phosphatase 1, 97.7 1.7E-05 3.7E-10 60.1 1.3 102 40-146 93-195 (414)
52 KOG1859 Leucine-rich repeat pr 97.6 2.3E-06 5E-11 67.5 -4.3 115 28-148 173-290 (1096)
53 KOG0531 Protein phosphatase 1, 97.5 3E-05 6.4E-10 58.8 0.6 105 40-149 70-174 (414)
54 PRK15386 type III secretion pr 97.5 0.00015 3.2E-09 54.5 4.0 87 62-160 48-137 (426)
55 KOG2982 Uncharacterized conser 97.4 5.1E-05 1.1E-09 54.2 0.7 63 88-151 197-263 (418)
56 KOG1644 U2-associated snRNP A' 97.3 0.00062 1.3E-08 46.1 5.3 83 38-122 60-149 (233)
57 PF13306 LRR_5: Leucine rich r 97.2 0.0028 6E-08 39.8 7.4 117 37-163 7-128 (129)
58 KOG4341 F-box protein containi 97.2 5.7E-05 1.2E-09 56.1 -0.9 112 40-151 292-415 (483)
59 KOG1644 U2-associated snRNP A' 97.1 0.0015 3.3E-08 44.3 5.1 101 43-146 43-149 (233)
60 PF00560 LRR_1: Leucine Rich R 96.9 0.0005 1.1E-08 29.3 1.1 18 92-109 2-19 (22)
61 PF13306 LRR_5: Leucine rich r 96.9 0.0095 2.1E-07 37.3 7.5 102 31-140 23-129 (129)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00081 1.8E-08 47.1 1.7 102 42-145 43-151 (260)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.0025 5.4E-08 45.4 3.5 24 1-24 91-114 (388)
64 PF00560 LRR_1: Leucine Rich R 96.6 0.00091 2E-08 28.5 0.8 21 138-159 1-21 (22)
65 COG5238 RNA1 Ran GTPase-activa 96.4 0.0051 1.1E-07 43.9 4.0 146 2-149 30-226 (388)
66 PF13504 LRR_7: Leucine rich r 96.4 0.0033 7E-08 24.9 1.7 16 91-106 2-17 (17)
67 KOG2123 Uncharacterized conser 95.8 0.00041 8.8E-09 49.4 -3.9 99 41-143 18-123 (388)
68 KOG1947 Leucine rich repeat pr 95.7 0.0041 8.9E-08 47.8 1.0 110 41-150 187-308 (482)
69 smart00369 LRR_TYP Leucine-ric 95.6 0.012 2.6E-07 25.9 2.0 22 1-23 1-22 (26)
70 smart00370 LRR Leucine-rich re 95.6 0.012 2.6E-07 25.9 2.0 22 1-23 1-22 (26)
71 KOG3864 Uncharacterized conser 95.6 0.0021 4.6E-08 43.5 -0.9 79 44-122 103-185 (221)
72 KOG4341 F-box protein containi 95.5 0.0072 1.6E-07 45.4 1.5 113 40-152 266-387 (483)
73 KOG2982 Uncharacterized conser 95.0 0.01 2.2E-07 43.0 0.8 69 33-102 88-158 (418)
74 KOG2123 Uncharacterized conser 94.9 0.0011 2.4E-08 47.2 -3.9 84 65-152 18-103 (388)
75 KOG1947 Leucine rich repeat pr 94.7 0.015 3.2E-07 44.7 1.3 90 37-126 209-308 (482)
76 KOG3864 Uncharacterized conser 93.7 0.012 2.6E-07 40.0 -0.8 64 37-100 120-186 (221)
77 KOG2739 Leucine-rich acidic nu 93.5 0.084 1.8E-06 37.3 2.9 85 64-151 41-130 (260)
78 KOG0473 Leucine-rich repeat pr 93.2 0.00069 1.5E-08 47.0 -7.4 91 32-124 31-122 (326)
79 smart00367 LRR_CC Leucine-rich 92.8 0.089 1.9E-06 23.1 1.5 16 1-16 1-16 (26)
80 KOG0473 Leucine-rich repeat pr 91.7 0.003 6.5E-08 44.0 -5.9 86 61-148 37-122 (326)
81 smart00364 LRR_BAC Leucine-ric 91.3 0.13 2.8E-06 22.8 1.1 17 91-107 3-19 (26)
82 PF13516 LRR_6: Leucine Rich r 88.6 0.36 7.9E-06 20.5 1.5 13 1-13 1-13 (24)
83 smart00365 LRR_SD22 Leucine-ri 86.9 0.69 1.5E-05 20.4 1.8 16 1-17 1-16 (26)
84 smart00368 LRR_RI Leucine rich 78.5 1.8 3.9E-05 19.3 1.4 12 2-13 2-13 (28)
85 KOG3763 mRNA export factor TAP 66.6 2.2 4.8E-05 33.7 0.4 34 90-123 218-254 (585)
86 KOG4308 LRR-containing protein 62.8 0.098 2.1E-06 40.7 -7.5 12 2-13 115-126 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=2.3e-18 Score=141.17 Aligned_cols=131 Identities=24% Similarity=0.249 Sum_probs=63.8
Q ss_pred cchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccC
Q 030897 34 LSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELL 112 (169)
Q Consensus 34 lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l 112 (169)
+|..+.++++|++|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|++|++++|++.. +|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 44445555555555555544444444444445555555555544333444445555555555555554443 44445555
Q ss_pred CCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030897 113 SGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164 (169)
Q Consensus 113 ~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 164 (169)
++|+.|++++|.....+|..+.++++|++|++++|.....+|..+..+++|+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 5555555554433334444444455555555555444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.9e-18 Score=139.79 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=108.2
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhcc--------CCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEe
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQVLGD--------RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLK 72 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~~--------~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 72 (169)
+++|++|++++|...+.+|..+..+.. +.-...+|..+..+++|+.+++++|.....+|..+..+++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 356777777777655556665554222 222234566777788888888887666666777777777888888
Q ss_pred eCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCc
Q 030897 73 LSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
+++|.....+|..++.+++|++|++++|++.. +|..++.+++|+.|++++|.....+|..+.++++|+.|++++|....
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 87766555666777777777777777777654 66666677777777777655545566666666666666666665555
Q ss_pred ccCcccCCccchhh
Q 030897 152 NVPETLGKVESLEV 165 (169)
Q Consensus 152 ~~p~~~~~l~~L~~ 165 (169)
.+|..++.+++|++
T Consensus 323 ~~~~~~~~l~~L~~ 336 (968)
T PLN00113 323 KIPVALTSLPRLQV 336 (968)
T ss_pred cCChhHhcCCCCCE
Confidence 55655555555544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.9e-19 Score=115.22 Aligned_cols=156 Identities=26% Similarity=0.354 Sum_probs=116.5
Q ss_pred CCCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeC
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLS 74 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 74 (169)
.+..+|-+|+|. +..+|..+..+. ..+.++++|.++..+++|+.++++. +++..+|..|++++.|++||+.
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence 345667788776 666665555521 2566778888888888888888887 5777778888888888888888
Q ss_pred Cccccc-ccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCccc
Q 030897 75 GLLKFR-EFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNV 153 (169)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 153 (169)
+|+..+ ..|..|..++.|+.|+++.|.+..+|..++.+++|+.|.+.. +.+-++|..++.++.|++|.+.+ +.+..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeec
Confidence 866433 456667777778888888888877888888888888888877 56777887788888888888888 566777
Q ss_pred CcccCCcc
Q 030897 154 PETLGKVE 161 (169)
Q Consensus 154 p~~~~~l~ 161 (169)
|.+++.+.
T Consensus 189 ppel~~l~ 196 (264)
T KOG0617|consen 189 PPELANLD 196 (264)
T ss_pred Chhhhhhh
Confidence 77777654
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=4e-16 Score=129.56 Aligned_cols=152 Identities=32% Similarity=0.514 Sum_probs=98.3
Q ss_pred CCCCcEEeccCCcCCcccCchHHh-------hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEee
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQV-------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKL 73 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~-------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l 73 (169)
+++|+.|++++|..++.+|+.... +.+|..+.++|..+.++++|+.|++++|+.++.+|..+ .+++|+.|++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 467888888888777777763322 45677788888888888999999999888888888755 5778888888
Q ss_pred CCcccccccccccCCCCCCcEEEecCcccCCccccc------------------------------ccCCCCCeEecCCC
Q 030897 74 SGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI------------------------------ELLSGNVLLNLKDC 123 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~------------------------------~~l~~L~~l~l~~~ 123 (169)
++|..++.+|.. .++|++|++++|.+..+|..+ ...++|+.|++++|
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 887766555532 234555555555554444321 01134555555555
Q ss_pred cccccCcccccCCCCCceEeccCCcCCcccCcc
Q 030897 124 KNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPET 156 (169)
Q Consensus 124 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 156 (169)
+.+..+|..++++++|+.|++++|+.++.+|..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 555555555556666666666665555555543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=3.4e-15 Score=124.14 Aligned_cols=54 Identities=33% Similarity=0.523 Sum_probs=34.7
Q ss_pred CCCcEEeccCCcCCcccCchHHh--------hccCCChhccchhhhcccccceeeecCccccc
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQV--------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLE 56 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~--------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~ 56 (169)
++|+.|++++|..+..+|..+.. +.+|..++.+|..+ ++++|+.|++++|..++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc
Confidence 56788888887777777776654 34466666666543 45666666666654443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=3.8e-17 Score=106.03 Aligned_cols=135 Identities=23% Similarity=0.320 Sum_probs=116.2
Q ss_pred CCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC--c
Q 030897 28 RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG--L 105 (169)
Q Consensus 28 ~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~ 105 (169)
.+.+..+|+.+..+.+|+++++++ +.++.+|.++++++.|+.|++.- +.+...|.+|+.++.|+.|++.+|++.+ +
T Consensus 42 HNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~l 119 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSL 119 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccC
Confidence 456677888899999999999998 68889999899999999999887 4455678999999999999999998877 8
Q ss_pred ccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030897 106 PASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 106 ~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
|..|..++.|+.|+++. +..+.+|..++.+++|+.|.+.+| .+-.+|.+++.+..|++|
T Consensus 120 pgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLREL 178 (264)
T ss_pred CcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHH
Confidence 88888888999999988 788899988999999999999994 455789999998888876
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=5.6e-16 Score=118.03 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=102.6
Q ss_pred CCCcEEeccCCcCCcccCchHHhhc-------cCCChhccch-hhhcccccceeeecCccccccchh-------------
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSF-AIELLFRLVLLTLNGCKNLERLER------------- 60 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~------------- 60 (169)
..|..||+|+|. +++.|..+-... ..++|.++|. -|.+++.|-.|++++ ++++.+|.
T Consensus 103 ~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhc
Confidence 446666666665 666665554411 2344555555 233555555555555 23333332
Q ss_pred -----------hccCCCCCCEEeeCCccc-ccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCccccc
Q 030897 61 -----------TISVLKYLSTLKLSGLLK-FREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKS 128 (169)
Q Consensus 61 -----------~~~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~ 128 (169)
.+.++.+|++|.+++.+. ...+|..+..+.+|+.++++.|++..+|+.+..+++|+.|++++ +.++.
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-Cceee
Confidence 233455566666665332 22467777777888888888888888888888888888888887 56777
Q ss_pred CcccccCCCCCceEeccCCcCCcccCcccCCccchhhhh
Q 030897 129 LPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRL 167 (169)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 167 (169)
+....+...+|+.|++|. +.+..+|..+.+++.|+.|.
T Consensus 260 L~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred eeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHH
Confidence 666566667777788877 56677777777777777664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=6.9e-16 Score=117.58 Aligned_cols=162 Identities=24% Similarity=0.342 Sum_probs=107.3
Q ss_pred CCCcEEeccCCcC----CcccCchHHh----hcc-CCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEe
Q 030897 2 KSLKTLVLSGCLK----LKKFPDIVQV----LGD-RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLK 72 (169)
Q Consensus 2 ~~L~~l~ls~~~~----l~~~p~~~~~----~~~-~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 72 (169)
.+|++|.+++|+. +.++|...+. +.+ -..+..+|.++..+.+|..++++. +.+..+|+++-.+++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheec
Confidence 3456666666542 2334443332 111 122334677777777788888876 57777777777778888888
Q ss_pred eCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcc-cccCcccccCCCCCceEeccCCcCCc
Q 030897 73 LSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKN-LKSLPSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~-l~~~~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
+++ +.++.+.-..+...+++.|+++.|+++.+|..+..++.|+.|.+.+|+. .+.+|..++.+..|+.+.+++ +.++
T Consensus 252 LS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 252 LSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred cCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccc
Confidence 888 4455555555666677778888887777787777777787777766332 255777777777777777776 5667
Q ss_pred ccCcccCCccchhhh
Q 030897 152 NVPETLGKVESLEVR 166 (169)
Q Consensus 152 ~~p~~~~~l~~L~~l 166 (169)
-+|+++..+..|+.|
T Consensus 330 lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKL 344 (1255)
T ss_pred cCchhhhhhHHHHHh
Confidence 777777777777665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=2.9e-15 Score=108.54 Aligned_cols=158 Identities=32% Similarity=0.382 Sum_probs=107.6
Q ss_pred CCcEEeccCCcCCcccCchHHh-------hccCCChhccchhhhcccccceeeecCc----------------------c
Q 030897 3 SLKTLVLSGCLKLKKFPDIVQV-------LGDRTDIRELSFAIELLFRLVLLTLNGC----------------------K 53 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~p~~~~~-------~~~~~~l~~lp~~~~~l~~L~~l~l~~~----------------------~ 53 (169)
.|+.+++++|. +.++|+.++. ....+++.++|+.+..+.++..+++.++ +
T Consensus 115 ~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 115 SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhhhhccccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 45556666665 5556655555 1124556666666666666666665553 2
Q ss_pred ccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc-cCCCCCeEecCCCcccccCccc
Q 030897 54 NLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE-LLSGNVLLNLKDCKNLKSLPST 132 (169)
Q Consensus 54 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~l~~L~~l~l~~~~~l~~~~~~ 132 (169)
.++.+|..++.+.+|..+++.. +.+.+.| +|+++..|.+++++.|.+..+|...+ ++.++.+||+.. ++++++|+.
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchH
Confidence 3444555555556666666666 4455555 66777777777777777777776544 889999999998 789999998
Q ss_pred ccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030897 133 TNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 133 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
+--+++|+.||+++ +.++.+|.+++++ .|+.|
T Consensus 271 ~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 271 ICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred HHHhhhhhhhcccC-CccccCCcccccc-eeeeh
Confidence 88889999999998 6778889888887 56544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.44 E-value=1.6e-14 Score=109.04 Aligned_cols=127 Identities=22% Similarity=0.282 Sum_probs=91.4
Q ss_pred hhhcccccceeeecCccccccc-hhhccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCC-cc---cccc
Q 030897 37 AIELLFRLVLLTLNGCKNLERL-ERTISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRG-LP---ASIE 110 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~-~~---~~~~ 110 (169)
++..+++|.+|++++| .++.+ +.++..+..|++|.++.| .+..+. ..|.++.+|+.|+++.|.+++ +. ..+.
T Consensus 312 ~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred hhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 4555667777777763 44443 345555666777777773 344443 457778889999999987776 33 3466
Q ss_pred cCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCccchhhhh
Q 030897 111 LLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRL 167 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 167 (169)
++++|+.|++.+ +.++.+| .++.++..|++||+++|..-+--|.+|..+ .|++|+
T Consensus 390 gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 390 GLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 789999999998 6888887 588999999999999977666667788877 677664
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=1.5e-13 Score=103.90 Aligned_cols=137 Identities=18% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCChhccch-hhhcccccceeeecCccccccc-hhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCc
Q 030897 28 RTDIRELSF-AIELLFRLVLLTLNGCKNLERL-ERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGL 105 (169)
Q Consensus 28 ~~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 105 (169)
.+.++.+|. .|.++++|+.|++.. +.+..+ .-+|..+++|+.+.+..|...+-....|-.+..+++|+++.|++..+
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 455667776 677788888888887 455555 33566777888888877544333334566677788888888888776
Q ss_pred c-cccccCCCCCeEecCCCccccc-CcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030897 106 P-ASIELLSGNVLLNLKDCKNLKS-LPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 106 ~-~~~~~l~~L~~l~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
. .++.+++.|+.|++++| .+.. -++.-...++|++|++++|..-+.-++++..+..|++|
T Consensus 285 n~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred hcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 5 35677888888888874 4443 34555567788888888844433333456666666554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=7.8e-14 Score=101.22 Aligned_cols=113 Identities=25% Similarity=0.367 Sum_probs=71.3
Q ss_pred cchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccC
Q 030897 34 LSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELL 112 (169)
Q Consensus 34 lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l 112 (169)
+|-.+..+++|..+++++ +.+-++|..++.+..|+.++++.| ..+.+|+.+....-++.+-.+.|++..+++. +.++
T Consensus 427 v~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 444555666666666665 466666665655666666666663 4444554444443344444555666666544 6677
Q ss_pred CCCCeEecCCCcccccCcccccCCCCCceEeccCCcC
Q 030897 113 SGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 113 ~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 149 (169)
.+|.+|++.+ +.+..+|..+++|++|++|++++|+.
T Consensus 505 ~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 505 RNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 7777777775 67777777777777777777777544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=3.7e-13 Score=106.01 Aligned_cols=142 Identities=25% Similarity=0.355 Sum_probs=72.7
Q ss_pred CCCCcEEeccCCcCCcccCchHHhhc---------cCCChhccch-------------------------hhhcccccce
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQVLG---------DRTDIRELSF-------------------------AIELLFRLVL 46 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~~~---------~~~~l~~lp~-------------------------~~~~l~~L~~ 46 (169)
++.|++|++..|. +..+|+.+.... .++.+..+|. .+.+..+|++
T Consensus 309 ~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 4678999999887 888888766511 1233333332 2333445555
Q ss_pred eeecCccccccchh-hccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcc
Q 030897 47 LTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKN 125 (169)
Q Consensus 47 l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~ 125 (169)
|++++ +.+..+|+ .+.++..|+.|+++| +.++.+|..+..+..|++|...+|++..+| .+..++.|+.+|++. +.
T Consensus 388 LhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~ 463 (1081)
T KOG0618|consen 388 LHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NN 463 (1081)
T ss_pred eeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-ch
Confidence 55555 34444443 234455555555555 344445555555555555555555555555 344555555555554 33
Q ss_pred cccC--cccccCCCCCceEeccCCc
Q 030897 126 LKSL--PSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 126 l~~~--~~~~~~l~~L~~L~l~~~~ 148 (169)
+..+ |... .-++|++||+++|.
T Consensus 464 L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhC-CCcccceeeccCCc
Confidence 3222 2211 11455555555544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-12 Score=103.03 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=12.2
Q ss_pred CCcEEeccCCcCCcccCchHHh
Q 030897 3 SLKTLVLSGCLKLKKFPDIVQV 24 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~p~~~~~ 24 (169)
+|+.++++++. +..+|+++..
T Consensus 242 nl~~~dis~n~-l~~lp~wi~~ 262 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLPEWIGA 262 (1081)
T ss_pred cceeeecchhh-hhcchHHHHh
Confidence 46666666665 5556655444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=2.6e-12 Score=93.12 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=67.4
Q ss_pred ccCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCcccCCccc
Q 030897 85 KTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPETLGKVES 162 (169)
Q Consensus 85 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 162 (169)
.|+++++|+.+++++|+++.+. .+|.+..+++.|.+.. ++++.+. ..|.++..|+.|++.+|+....-|.+|..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 3778899999999999999865 5678889999999998 6777665 46889999999999997776677778888888
Q ss_pred hhhhh
Q 030897 163 LEVRL 167 (169)
Q Consensus 163 L~~l~ 167 (169)
|.++.
T Consensus 348 l~~l~ 352 (498)
T KOG4237|consen 348 LSTLN 352 (498)
T ss_pred eeeee
Confidence 77653
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=2.4e-12 Score=97.08 Aligned_cols=154 Identities=25% Similarity=0.314 Sum_probs=99.0
Q ss_pred EEeccCCcCCcccCchHHh-------hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccc
Q 030897 6 TLVLSGCLKLKKFPDIVQV-------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLK 78 (169)
Q Consensus 6 ~l~ls~~~~l~~~p~~~~~-------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 78 (169)
..|++.|. +.++|..+.. +...+.+..+|+.+.++..|++++++. +.+..+|..+..+ -|+++-++. ++
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN-Nk 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN-NK 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-Cc
Confidence 35666666 6667766655 223455667777777788888888877 4566666655433 356665555 55
Q ss_pred ccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccC
Q 030897 79 FREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLG 158 (169)
Q Consensus 79 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 158 (169)
++.+|+.++....|..|+.+.|.+..+|..++.+.+|+.+.+.. +.+..+|..+..+ .|..||++. +.+..+|..|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeeccc-Cceeecchhhh
Confidence 66677777766677777777777777777677777777776666 4555555545433 356666665 55666676666
Q ss_pred Cccchhhh
Q 030897 159 KVESLEVR 166 (169)
Q Consensus 159 ~l~~L~~l 166 (169)
+++.|+++
T Consensus 232 ~m~~Lq~l 239 (722)
T KOG0532|consen 232 KMRHLQVL 239 (722)
T ss_pred hhhhheee
Confidence 66666655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1e-10 Score=93.26 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=57.7
Q ss_pred ChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccC-------------------CCC
Q 030897 30 DIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTS-------------------SKD 90 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-------------------~~~ 90 (169)
.+..+|..+. .+|+.|++++ +.+..+|..+ .++|+.|++++|. +..+|..+. ..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~ 325 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFH-NKISCLPENL--PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPP 325 (754)
T ss_pred ccCcCChhHh--CCCCEEECcC-CccCcccccc--CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccc
Confidence 3444444332 3566666665 3444555443 2456666666642 333332211 113
Q ss_pred CCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCccc
Q 030897 91 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETL 157 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~ 157 (169)
+|+.|++++|.++.+|..+ .++|+.|++++| .+..+|..+ .++|+.|++++| .+..+|+.+
T Consensus 326 sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l 386 (754)
T PRK15370 326 GLKTLEAGENALTSLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTNLPENL 386 (754)
T ss_pred cceeccccCCccccCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCCCCHhH
Confidence 4555555555555554433 246666666663 455555433 246777777774 344555443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=1.5e-10 Score=92.28 Aligned_cols=141 Identities=23% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCcEEeccCCcCCcccCchHHhhc----cCCChhccchhhhcccccceeeecCccccccchhhcc--------------
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQVLG----DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTIS-------------- 63 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~~~----~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~-------------- 63 (169)
++|+.|++++|. ++.+|.....+. ..+.++.+|.. ..+|++|++++| .+..+|....
T Consensus 302 ~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 302 PGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTS 376 (788)
T ss_pred cccceeECCCCc-cccCCCCcccccccccccCcccccccc---ccccceEecCCC-ccCCCCCCCcccceehhhcccccc
Confidence 346666666654 444443222211 12333444431 135777777774 4444443110
Q ss_pred ---CCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCc
Q 030897 64 ---VLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLR 140 (169)
Q Consensus 64 ---~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~ 140 (169)
...+|+.|++++| .+..+|.. .++|+.|++++|+++.+|.. +.+|+.|++++ +.++.+|..+..+++|+
T Consensus 377 LP~l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 377 LPALPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred CcccccccceEEecCC-cccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 0123444555443 23333322 13455566666655555532 23455566665 45566676666777777
Q ss_pred eEeccCCcCCcccCc
Q 030897 141 MLHLSGCSKLKNVPE 155 (169)
Q Consensus 141 ~L~l~~~~~~~~~p~ 155 (169)
.+++++|+.....+.
T Consensus 449 ~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 449 TVNLEGNPLSERTLQ 463 (788)
T ss_pred eEECCCCCCCchHHH
Confidence 777777665444433
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=2.4e-10 Score=91.09 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=12.1
Q ss_pred CCCcEEeccCCcCCcccCch
Q 030897 2 KSLKTLVLSGCLKLKKFPDI 21 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~ 21 (169)
++|++|++++|. ++.+|..
T Consensus 242 ~~Lk~LdLs~N~-LtsLP~l 260 (788)
T PRK15387 242 PELRTLEVSGNQ-LTSLPVL 260 (788)
T ss_pred CCCcEEEecCCc-cCcccCc
Confidence 467777777764 5566543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=1.4e-10 Score=92.50 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCChhccchhhhcccccceeeecCccccccchhhcc-------------------CCCCCCEEeeCCcccccccccccCC
Q 030897 28 RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTIS-------------------VLKYLSTLKLSGLLKFREFPEKTSS 88 (169)
Q Consensus 28 ~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~-------------------~~~~l~~l~l~~~~~~~~~~~~~~~ 88 (169)
++.+..+|..+. ++|+.|++++| .++.+|..+. ..++|+.|++++|. +..+|..+.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~- 345 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLP- 345 (754)
T ss_pred CCccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhc-
Confidence 455666665443 46777787775 3333332110 13567888888854 445665443
Q ss_pred CCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccC
Q 030897 89 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLG 158 (169)
Q Consensus 89 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 158 (169)
++|+.|++++|++..+|..+ .++|+.|++++| .+..+|..+. .+|+.|++++| .+..+|+.+.
T Consensus 346 -~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~ 408 (754)
T PRK15370 346 -PELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLP 408 (754)
T ss_pred -CcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHH
Confidence 68999999999999888755 368999999984 6778887554 47999999995 5567776543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=4.8e-11 Score=86.72 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=27.5
Q ss_pred cCCCCCCcEEEecCcccCC-----cccccccCCCCCeEecCCCccc----ccCcccccCCCCCceEeccCCc
Q 030897 86 TSSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDCKNL----KSLPSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 86 ~~~~~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~l~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~ 148 (169)
+..+++|+.|++++|++.+ ++..+...++|+.+++++|..- ..+...+..+++|++|++++|.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 3334445555555554442 1222233345555555553211 1122233445556666666543
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.6e-10 Score=76.61 Aligned_cols=106 Identities=23% Similarity=0.326 Sum_probs=33.3
Q ss_pred hcccccceeeecCccccccchhhcc-CCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccccc-ccCCCCC
Q 030897 39 ELLFRLVLLTLNGCKNLERLERTIS-VLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASI-ELLSGNV 116 (169)
Q Consensus 39 ~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~l~~L~ 116 (169)
.+..+++.|++++ +.++.+.. ++ .+.+++.|++++|. +..+ +.+..++.|+.|++++|+++++.+.+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~-n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRG-NQISTIEN-LGATLDKLEVLDLSNNQ-ITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS---S---TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccc-cccccccc-hhhhhcCCCEEECCCCC-Cccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3444677778877 35554443 33 46677788887743 4444 34566777888888888777765543 3567788
Q ss_pred eEecCCCcccccCc--ccccCCCCCceEeccCCcC
Q 030897 117 LLNLKDCKNLKSLP--STTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 117 ~l~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~ 149 (169)
.|++++ +.+..+. ..+..+++|+.|++.+|+.
T Consensus 92 ~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 888776 4554443 2456677788888877654
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.5e-10 Score=75.76 Aligned_cols=104 Identities=24% Similarity=0.255 Sum_probs=50.4
Q ss_pred cccccceeeecCccccccchhhccCCCCCCEEeeCCccccccccccc-CCCCCCcEEEecCcccCCccc--ccccCCCCC
Q 030897 40 LLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKT-SSKDQLLEIHLEGTAIRGLPA--SIELLSGNV 116 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~--~~~~l~~L~ 116 (169)
.+.+|+.|++++ +.++.++. +..++.|+.|++++| .+..+.+.+ ..+++|+.|++++|++.++.. .+..+++|+
T Consensus 40 ~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TT-S--S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCC-CCCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 467899999999 56677764 777999999999995 566665444 358899999999999988653 467899999
Q ss_pred eEecCCCcccccC--c-ccccCCCCCceEeccC
Q 030897 117 LLNLKDCKNLKSL--P-STTNGLRSLRMLHLSG 146 (169)
Q Consensus 117 ~l~l~~~~~l~~~--~-~~~~~l~~L~~L~l~~ 146 (169)
.|++.+|+.-..- + ..+..+++|+.||-..
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999996554321 1 1456789999998544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=1.1e-09 Score=86.35 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=76.9
Q ss_pred cceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCeEecCC
Q 030897 44 LVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKD 122 (169)
Q Consensus 44 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~ 122 (169)
+..|+++++.....+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|++.. +|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5667777765555667777777788888887766555677777777788888888887775 677777778888888877
Q ss_pred CcccccCcccccCC-CCCceEeccCCcCCcccC
Q 030897 123 CKNLKSLPSTTNGL-RSLRMLHLSGCSKLKNVP 154 (169)
Q Consensus 123 ~~~l~~~~~~~~~l-~~L~~L~l~~~~~~~~~p 154 (169)
|+....+|..+... .++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 66556777665542 345667777665554433
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=2.9e-10 Score=82.66 Aligned_cols=112 Identities=20% Similarity=0.119 Sum_probs=57.0
Q ss_pred hhcc-cccceeeecCccccc----cchhhccCCCCCCEEeeCCccccc----ccccccCCCCCCcEEEecCcccCC----
Q 030897 38 IELL-FRLVLLTLNGCKNLE----RLERTISVLKYLSTLKLSGLLKFR----EFPEKTSSKDQLLEIHLEGTAIRG---- 104 (169)
Q Consensus 38 ~~~l-~~L~~l~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~---- 104 (169)
+..+ ++|+.+++++|.... .+...+..+++++.+++++|.... .++..+...++|++|++++|.+..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3444 667777777764432 223334445667777776654321 122334444567777777766543
Q ss_pred -cccccccCCCCCeEecCCCcccccCcccc-c----CCCCCceEeccCCcC
Q 030897 105 -LPASIELLSGNVLLNLKDCKNLKSLPSTT-N----GLRSLRMLHLSGCSK 149 (169)
Q Consensus 105 -~~~~~~~l~~L~~l~l~~~~~l~~~~~~~-~----~l~~L~~L~l~~~~~ 149 (169)
+...+..+++|+.|++++|..-......+ . ..+.|+++++++|..
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 22334455667777777643221111111 1 125666666666543
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=2.8e-09 Score=84.10 Aligned_cols=92 Identities=32% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccC
Q 030897 68 LSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSG 146 (169)
Q Consensus 68 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 146 (169)
++.|++++|.....+|..+..+++|+.|++++|++.. +|..++.+++|+.|++++|+....+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6778888877666788889999999999999999985 888899999999999999777778999999999999999999
Q ss_pred CcCCcccCcccCC
Q 030897 147 CSKLKNVPETLGK 159 (169)
Q Consensus 147 ~~~~~~~p~~~~~ 159 (169)
|+....+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 8887788887654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=4.4e-11 Score=90.43 Aligned_cols=157 Identities=27% Similarity=0.365 Sum_probs=118.2
Q ss_pred EeccCCcCCcccCchHHh---------hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcc
Q 030897 7 LVLSGCLKLKKFPDIVQV---------LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 7 l~ls~~~~l~~~p~~~~~---------~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 77 (169)
+.|+ +..++.+|..... -...+...++|..+..+-.|..+.++. +-+..+|..+..+..+++++++.|.
T Consensus 55 l~Ls-~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLS-GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccc-cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch
Confidence 4445 3446666654444 112344567787777777777777776 4566777777788889999998854
Q ss_pred cccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCccc
Q 030897 78 KFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETL 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~ 157 (169)
+...|..+..++ |+.|.+++|+++.+|+.++.+..|..++.+. +.+..+|..++++.+|+.|.+.. +.+..+|+++
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El 208 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEEL 208 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHH
Confidence 555788888887 8999999999999998888888899999887 67788888888899999998888 5566788888
Q ss_pred CCccchhhhhcC
Q 030897 158 GKVESLEVRLSC 169 (169)
Q Consensus 158 ~~l~~L~~l~~~ 169 (169)
..|+-.+--|+|
T Consensus 209 ~~LpLi~lDfSc 220 (722)
T KOG0532|consen 209 CSLPLIRLDFSC 220 (722)
T ss_pred hCCceeeeeccc
Confidence 888877777777
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2e-09 Score=80.67 Aligned_cols=113 Identities=30% Similarity=0.377 Sum_probs=45.0
Q ss_pred hhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc
Q 030897 31 IRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 110 (169)
++++|..+..+++|+.|++++ +.+..++......++++.+++++ +.+..+|..+.....|+++.+++|++...+..+.
T Consensus 152 i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~ 229 (394)
T COG4886 152 IESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLS 229 (394)
T ss_pred hhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhh
Confidence 334433444455555555554 23344443322344444444444 2333344333333334444444443323333333
Q ss_pred cCCCCCeEecCCCcccccCcccccCCCCCceEeccC
Q 030897 111 LLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSG 146 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 146 (169)
.+.++..+.+.+ +.+..++..++.+++++.+++++
T Consensus 230 ~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 230 NLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hcccccccccCC-ceeeeccchhccccccceecccc
Confidence 333333333332 22222233334444444444444
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=3.7e-09 Score=58.15 Aligned_cols=56 Identities=30% Similarity=0.460 Sum_probs=27.5
Q ss_pred CCcEEEecCcccCCccc-ccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCC
Q 030897 91 QLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGC 147 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~~-~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~ 147 (169)
+|++|++++|+++.+|. .+.++++|+.+++++ +.++.++ +.+.++++|+++++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555555442 344455555555554 3333333 34555555555555554
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=2.7e-09 Score=86.60 Aligned_cols=106 Identities=28% Similarity=0.345 Sum_probs=76.5
Q ss_pred ccccceeeecCccc-cccch-hhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeE
Q 030897 41 LFRLVLLTLNGCKN-LERLE-RTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLL 118 (169)
Q Consensus 41 l~~L~~l~l~~~~~-~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l 118 (169)
+++|+.|-+.++.. ...++ ..|..++.|++||+++|.....+|..++.+-+|++|+++++.++++|..++++..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 34566666666432 33333 33566788888888887777778888888888888888888888888888888888888
Q ss_pred ecCCCcccccCcccccCCCCCceEeccC
Q 030897 119 NLKDCKNLKSLPSTTNGLRSLRMLHLSG 146 (169)
Q Consensus 119 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 146 (169)
++..+..+...|.....+++|++|.+-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 8877666666666666677888877665
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=1.2e-08 Score=76.59 Aligned_cols=148 Identities=30% Similarity=0.363 Sum_probs=112.2
Q ss_pred CCcEEeccCCcCCcccCchHHhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCC
Q 030897 3 SLKTLVLSGCLKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSG 75 (169)
Q Consensus 3 ~L~~l~ls~~~~l~~~p~~~~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 75 (169)
+|++|++++|. +..+|.....+. ..+.+.++|.....++.|..+++++ +.+..+|........++++.+.+
T Consensus 141 nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcC
Confidence 68889999877 666654443322 2455667777666788999999999 68888887655567799999998
Q ss_pred cccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCc
Q 030897 76 LLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPE 155 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 155 (169)
|. ....+..+..+..+..+.+.+|++..++..++.+++++.+++++ +.+..++. ++.+.+++.++++++......|.
T Consensus 219 N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 219 NS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred Cc-ceecchhhhhcccccccccCCceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchh
Confidence 54 33456677778888888888888887778888899999999998 67777766 78889999999999665554443
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=4.3e-10 Score=81.86 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=80.8
Q ss_pred ChhccchhhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecC-cccCCccc
Q 030897 30 DIRELSFAIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEG-TAIRGLPA 107 (169)
Q Consensus 30 ~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~ 107 (169)
.++++|..+- +....+.+.. ++++.+|. .|..+++|++||++.|......|+.|.++.++..|-+.+ |+|+++|+
T Consensus 57 GL~eVP~~LP--~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCC--CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3445554322 2456667776 46666654 566777778888777543333356777777776666555 67777774
Q ss_pred -ccccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccCc-ccCCccchhhh
Q 030897 108 -SIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVPE-TLGKVESLEVR 166 (169)
Q Consensus 108 -~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l 166 (169)
.|+++..++.|.+.. +.+..++ +.+.+++++..|.+-+ +.+..++. .+..+..++++
T Consensus 134 ~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchH
Confidence 466777777777766 3445544 4677777777777766 44555554 45555555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.4e-09 Score=77.04 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=60.5
Q ss_pred hhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc
Q 030897 31 IRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110 (169)
Q Consensus 31 l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 110 (169)
|+.+.++..-.|+++.|++++| .+..+.. +..+++|+.||+++|. +..+...-.++-+++.|.+++|.+.++. .++
T Consensus 296 I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~ 371 (490)
T KOG1259|consen 296 ITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLS-GLR 371 (490)
T ss_pred hhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhhhh-hhH
Confidence 3445555555666777777763 4444433 5556667777777643 2222211122335566666666555432 234
Q ss_pred cCCCCCeEecCCCcccccCc--ccccCCCCCceEeccCC
Q 030897 111 LLSGNVLLNLKDCKNLKSLP--STTNGLRSLRMLHLSGC 147 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~ 147 (169)
.+.+|..|++++ +.++.+- ..+++++-|+++.+.+|
T Consensus 372 KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 372 KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence 566666666666 3443332 24566666666666664
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=2.8e-08 Score=54.59 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=31.1
Q ss_pred CCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCcc-cccccCCCCCeEecCCC
Q 030897 67 YLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDC 123 (169)
Q Consensus 67 ~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~l~l~~~ 123 (169)
+|+++++++| .++.+| ..+.++++|++|++++|++..++ ..+.++++|+.+++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555666654 344444 45555666666666666665544 34555666666666554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=5.9e-09 Score=73.94 Aligned_cols=119 Identities=22% Similarity=0.256 Sum_probs=83.8
Q ss_pred ccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCC
Q 030897 43 RLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 122 (169)
Q Consensus 43 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~ 122 (169)
.|+.+++++ +.++.+..+..-.|.+++|+++.|. +..+. .+..+++|+.|++++|.++.+..+-..+.++++|.+++
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 466777887 4666666666667788888888854 43333 36677788888888887777665555677788888887
Q ss_pred CcccccCcccccCCCCCceEeccCCcCCccc--CcccCCccchhhhh
Q 030897 123 CKNLKSLPSTTNGLRSLRMLHLSGCSKLKNV--PETLGKVESLEVRL 167 (169)
Q Consensus 123 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~l~ 167 (169)
+.++.+. .++.+-+|..||+++|+ ++.+ ...++++|.|..+.
T Consensus 362 -N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 362 -NKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred -hhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 5666553 36778889999999954 4433 34688998887653
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.6e-08 Score=74.56 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=58.8
Q ss_pred cccceeeecCccccc-cchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc--cccccCCCCCeE
Q 030897 42 FRLVLLTLNGCKNLE-RLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP--ASIELLSGNVLL 118 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~l 118 (169)
+.|+.|.++.|.... .+-.....+|++..|++.+|..+.........+..|+.|++++|++.+++ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 344555555543332 12223344666666666665422222222333445777888888777766 346677777777
Q ss_pred ecCCCcccccC--ccc-----ccCCCCCceEeccCCcC
Q 030897 119 NLKDCKNLKSL--PST-----TNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 119 ~l~~~~~l~~~--~~~-----~~~l~~L~~L~l~~~~~ 149 (169)
+++.| .+.++ |+. ....++|+.|++..|+.
T Consensus 277 nls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 277 NLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 77763 44332 332 23467788888888543
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=3.4e-09 Score=82.71 Aligned_cols=140 Identities=24% Similarity=0.316 Sum_probs=96.1
Q ss_pred CCCCcEEeccCCcCCcccCchHHh------hccCCChhccchhhhc----------ccccceeeecCccccccchhhccC
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQV------LGDRTDIRELSFAIEL----------LFRLVLLTLNGCKNLERLERTISV 64 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~------~~~~~~l~~lp~~~~~----------l~~L~~l~l~~~~~~~~~~~~~~~ 64 (169)
|+.|++|.+.+|. +...-..... +.-.++++.+...|.. =.+|...+.++ +.+..+..++.-
T Consensus 108 F~sLr~LElrg~~-L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCD-LSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSY-NRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcc-hhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcch-hhHHhHHHHHHH
Confidence 5689999999998 4432211111 1112233322222111 12566777777 677777777877
Q ss_pred CCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCcccccCCCCCceEe
Q 030897 65 LKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLH 143 (169)
Q Consensus 65 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~ 143 (169)
++.++.|+++.| ..+... .+..++.|++||+++|.+..+|.. ...+. |+.|.+.+ |.++.+.. +.++++|++||
T Consensus 186 l~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g-ie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG-IENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh-HHhhhhhhccc
Confidence 889999999995 454443 778889999999999999888853 33333 99999997 78888765 78899999999
Q ss_pred ccCC
Q 030897 144 LSGC 147 (169)
Q Consensus 144 l~~~ 147 (169)
+++|
T Consensus 261 lsyN 264 (1096)
T KOG1859|consen 261 LSYN 264 (1096)
T ss_pred hhHh
Confidence 9994
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=4.7e-08 Score=79.55 Aligned_cols=122 Identities=27% Similarity=0.314 Sum_probs=93.9
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCccc-ccccc-cccCCCCCCcEEEecCc-ccCCcccccccCCCCCeE
Q 030897 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLK-FREFP-EKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLL 118 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~l~~L~~l 118 (169)
...+.+.+.+ +....++... .++.+++|-+.++.. ...++ +.|..++.|+.||+++| .+..+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~-~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMN-NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEec-cchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3456666665 3444555433 355788888888653 44444 45888999999999988 667799999999999999
Q ss_pred ecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchhhh
Q 030897 119 NLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVR 166 (169)
Q Consensus 119 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 166 (169)
++++ ..++.+|..++.+++|.+|++..+.....+|.....+.+|++|
T Consensus 601 ~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 601 DLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred cccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 9998 6788999999999999999999977777776666668888765
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=1.3e-06 Score=65.17 Aligned_cols=126 Identities=18% Similarity=0.324 Sum_probs=60.4
Q ss_pred CCCcEEeccCCcCCcccCchHHh-----hccCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCc
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQV-----LGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGL 76 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-----~~~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 76 (169)
++++.|++++| .++.+|..... +..|..++.+|..+. ++|++|.+++|..+..+|. +|+.|++..+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred cCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCC
Confidence 56788888887 36666532211 333455555554331 3555555555544444433 2344444331
Q ss_pred c--cccccccccCCCCCCcEEEecCcc-cCC--cccccccCCCCCeEecCCCcccccCcccccCCCCCceEeccCC
Q 030897 77 L--KFREFPEKTSSKDQLLEIHLEGTA-IRG--LPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGC 147 (169)
Q Consensus 77 ~--~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 147 (169)
. .+..+|. +|+.|.+.+++ ... .|. .-.++|+.|++++|... .+|..+. .+|+.|+++.+
T Consensus 123 ~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 123 ATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 1 1222222 34445443321 111 111 11257888888886644 3443332 47788887664
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.5e-08 Score=70.89 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=92.1
Q ss_pred CCCCcEEeccCCcCCcccCchH----Hh-----hccCC-ChhccchhhhcccccceeeecCccccccchhhccCCCCCCE
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIV----QV-----LGDRT-DIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLST 70 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~----~~-----~~~~~-~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 70 (169)
||+|+.|+++.|.......... +. +..|. +..++......+|+|.+|++.+|.....-......+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 4677777777766322211111 11 11221 22345555667899999999997533322223344778999
Q ss_pred EeeCCcccccccc--cccCCCCCCcEEEecCcccCC--cccc-----cccCCCCCeEecCCCcccccCcc--cccCCCCC
Q 030897 71 LKLSGLLKFREFP--EKTSSKDQLLEIHLEGTAIRG--LPAS-----IELLSGNVLLNLKDCKNLKSLPS--TTNGLRSL 139 (169)
Q Consensus 71 l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~--~~~~-----~~~l~~L~~l~l~~~~~l~~~~~--~~~~l~~L 139 (169)
|++++|+.+. .+ ...+.++.|+.|+++.+++.+ .|.. ...+++|+.|++..| .+..++. .+..+.+|
T Consensus 251 LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 251 LDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENL 328 (505)
T ss_pred ccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchh
Confidence 9999976554 44 567788899999999998877 3432 356789999999984 5544442 34556677
Q ss_pred ceEeccCCc
Q 030897 140 RMLHLSGCS 148 (169)
Q Consensus 140 ~~L~l~~~~ 148 (169)
+++.+..+.
T Consensus 329 k~l~~~~n~ 337 (505)
T KOG3207|consen 329 KHLRITLNY 337 (505)
T ss_pred hhhhccccc
Confidence 777755543
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=1.1e-06 Score=44.74 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCcEEEecCcccCCcccccccCCCCCeEecCC
Q 030897 91 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 122 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~ 122 (169)
+|++|++++|+++++|..++++++|+.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 34555555555555544445555555555554
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=1.5e-06 Score=44.25 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=26.5
Q ss_pred CCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc
Q 030897 66 KYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP 106 (169)
Q Consensus 66 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 106 (169)
++|++|++++| .++.+|..++++++|++|++++|++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777774 45566666777777777777777776654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.9e-08 Score=71.23 Aligned_cols=126 Identities=27% Similarity=0.261 Sum_probs=80.1
Q ss_pred hhhcccccceeeecCccccccchh--hccCCCCCCEEeeCCcccccccc-cccCC-CCCCcEEEecCcc----cCCcccc
Q 030897 37 AIELLFRLVLLTLNGCKNLERLER--TISVLKYLSTLKLSGLLKFREFP-EKTSS-KDQLLEIHLEGTA----IRGLPAS 108 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~----l~~~~~~ 108 (169)
.+..-.+|..++++.|+.+++..- .+.++..|..|++++|...+..- ..+.. -+.+..|+++|++ .+++..-
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 355566788888888877776543 34678888888888876555432 11221 1457778888862 1223333
Q ss_pred cccCCCCCeEecCCCcccccC-cccccCCCCCceEeccCCcCCcccCcc---cCCccchh
Q 030897 109 IELLSGNVLLNLKDCKNLKSL-PSTTNGLRSLRMLHLSGCSKLKNVPET---LGKVESLE 164 (169)
Q Consensus 109 ~~~l~~L~~l~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~---~~~l~~L~ 164 (169)
....+++..||++.|..++.. -..+..++-|+++.++-|..+. |+. +...++|.
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLV 366 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceE
Confidence 456788889999888777652 2346677888999998886653 433 44444443
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.22 E-value=7e-07 Score=64.39 Aligned_cols=147 Identities=21% Similarity=0.123 Sum_probs=84.5
Q ss_pred CCCcEEeccCCcCCcccCchHHh-hccCCChhcc--------c----------------hhhhcccccceeeecCccccc
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQV-LGDRTDIREL--------S----------------FAIELLFRLVLLTLNGCKNLE 56 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-~~~~~~l~~l--------p----------------~~~~~l~~L~~l~l~~~~~~~ 56 (169)
++|+.++||+|..-...+..+.. +..|.+++++ | .....-++|+++..+.| ++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccc
Confidence 57999999999855444433333 4445444431 0 11223456777777764 333
Q ss_pred c-----chhhccCCCCCCEEeeCCccccc----ccccccCCCCCCcEEEecCcccCC-----cccccccCCCCCeEecCC
Q 030897 57 R-----LERTISVLKYLSTLKLSGLLKFR----EFPEKTSSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKD 122 (169)
Q Consensus 57 ~-----~~~~~~~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~l~l~~ 122 (169)
. +...+...+.++.+.++.|..-. .+...+..+++|+.|++..|-++. +.+.+..+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 23344556677777777654321 123456677788888887775543 334556677778887777
Q ss_pred CcccccCc----ccc-cCCCCCceEeccCCcC
Q 030897 123 CKNLKSLP----STT-NGLRSLRMLHLSGCSK 149 (169)
Q Consensus 123 ~~~l~~~~----~~~-~~l~~L~~L~l~~~~~ 149 (169)
|..-..-. +.+ ...++|+++.+.+|..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 65443322 112 2356778888777544
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=3.2e-07 Score=58.04 Aligned_cols=107 Identities=23% Similarity=0.335 Sum_probs=74.9
Q ss_pred cceeeecCccccccchh---hccCCCCCCEEeeCCcccccccccccC-CCCCCcEEEecCcccCCcccccccCCCCCeEe
Q 030897 44 LVLLTLNGCKNLERLER---TISVLKYLSTLKLSGLLKFREFPEKTS-SKDQLLEIHLEGTAIRGLPASIELLSGNVLLN 119 (169)
Q Consensus 44 L~~l~l~~~~~~~~~~~---~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~ 119 (169)
+..++++.|. +..+++ .+.....++.+++++ +..+.+|+.+. ..+.++.+++++|.++++|+.+..++.|+.++
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4556777753 333333 344566777888888 55777775544 44578889999999999998888889999999
Q ss_pred cCCCcccccCcccccCCCCCceEeccCCcCCcccC
Q 030897 120 LKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP 154 (169)
Q Consensus 120 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p 154 (169)
++. +.+...|+-+..+.++.+|+..+ +....+|
T Consensus 107 l~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid 139 (177)
T KOG4579|consen 107 LRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEID 139 (177)
T ss_pred ccc-CccccchHHHHHHHhHHHhcCCC-CccccCc
Confidence 987 56666666566688888888777 3444444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=3.8e-07 Score=57.68 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=69.0
Q ss_pred hcccccceeeecCccccccchhhc-cCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030897 39 ELLFRLVLLTLNGCKNLERLERTI-SVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 39 ~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
.....|+..++++ +..+.+|..+ ..++.++.++++. +.+.++|+++..++.|+.++++.|.+...|+-+..+.++..
T Consensus 50 ~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3345566778888 5677777666 4567889999988 55777898899999999999999999888887777888888
Q ss_pred EecCCCcccccCc
Q 030897 118 LNLKDCKNLKSLP 130 (169)
Q Consensus 118 l~l~~~~~l~~~~ 130 (169)
|+..+ +....++
T Consensus 128 Lds~~-na~~eid 139 (177)
T KOG4579|consen 128 LDSPE-NARAEID 139 (177)
T ss_pred hcCCC-CccccCc
Confidence 88877 4555555
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=2e-06 Score=62.10 Aligned_cols=40 Identities=18% Similarity=-0.063 Sum_probs=24.0
Q ss_pred hhcccccceeeecCccccccch----hhccCCCCCCEEeeCCcc
Q 030897 38 IELLFRLVLLTLNGCKNLERLE----RTISVLKYLSTLKLSGLL 77 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~ 77 (169)
+..+++|+++++|+|.+....+ .-+.++..|+.|.+.+|.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4466788888888875443322 233456666666666553
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=5.7e-06 Score=66.13 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=56.6
Q ss_pred cccccceeeecCcccccc-chhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcc--cccccCCCCC
Q 030897 40 LLFRLVLLTLNGCKNLER-LERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLP--ASIELLSGNV 116 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~ 116 (169)
.+|.|+.|.+.+-....+ +..-..++++|..|||++ +.+..+ .++..+.+|+.|.+.+=.+.... ..+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 356666666666322221 222235667777777777 344443 45566666666666554444322 2355677777
Q ss_pred eEecCCCcccccC------cccccCCCCCceEeccCCc
Q 030897 117 LLNLKDCKNLKSL------PSTTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 117 ~l~l~~~~~l~~~------~~~~~~l~~L~~L~l~~~~ 148 (169)
.||++.......- -+.-..++.|+.||.|+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777652222111 1112346677777776643
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.6e-07 Score=63.96 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=55.7
Q ss_pred hhcccccceeeecCccccccchhh-c-cCCCCCCEEeeCCcccccc---cccccCCCCCCcEEEecCc-ccCC-cccccc
Q 030897 38 IELLFRLVLLTLNGCKNLERLERT-I-SVLKYLSTLKLSGLLKFRE---FPEKTSSKDQLLEIHLEGT-AIRG-LPASIE 110 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~-~-~~~~~l~~l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~-~l~~-~~~~~~ 110 (169)
+..|+.|..|+++.|...+..=.. + +--+.++.|+++||...-. +.....+++++..||++.+ .++. ....+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 445666666666666433322111 1 1234556666666543211 1223455666777777666 3332 334455
Q ss_pred cCCCCCeEecCCCcccccCcc---cccCCCCCceEeccCC
Q 030897 111 LLSGNVLLNLKDCKNLKSLPS---TTNGLRSLRMLHLSGC 147 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~~~~---~~~~l~~L~~L~l~~~ 147 (169)
.++.|+.++++.|..+ .|. .+...++|.+|++.+|
T Consensus 336 kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 6666777776665433 222 2445566666766665
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=8.7e-06 Score=65.13 Aligned_cols=104 Identities=25% Similarity=0.376 Sum_probs=75.8
Q ss_pred cccceeeecCccc-cccchhhc-cCCCCCCEEeeCCccccc--ccccccCCCCCCcEEEecCcccCCcccccccCCCCCe
Q 030897 42 FRLVLLTLNGCKN-LERLERTI-SVLKYLSTLKLSGLLKFR--EFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVL 117 (169)
Q Consensus 42 ~~L~~l~l~~~~~-~~~~~~~~-~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 117 (169)
.+|++|++++... ...++..+ ..+|+|+.|.+.+ .... ++.....++++|..||+++++++.+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 5789999988533 33455555 4689999999988 3322 2335667889999999999999887 66788999999
Q ss_pred EecCCCcccccCc--ccccCCCCCceEeccCCc
Q 030897 118 LNLKDCKNLKSLP--STTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 118 l~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~ 148 (169)
|.+.+ =.++... ..+-++++|++||+|.-.
T Consensus 200 L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence 98875 2333322 246689999999999843
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=1.7e-05 Score=60.12 Aligned_cols=102 Identities=30% Similarity=0.356 Sum_probs=44.5
Q ss_pred cccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEe
Q 030897 40 LLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLN 119 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~ 119 (169)
.+.++..+++.+ +.++.+...+..+++|+++++++| .+..+ ..+..++.|+.|++++|.++.+.. +..++.|+.++
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 344455555554 333333333344555555555553 22222 223333445555555555544332 12245555555
Q ss_pred cCCCcccccCccc-ccCCCCCceEeccC
Q 030897 120 LKDCKNLKSLPST-TNGLRSLRMLHLSG 146 (169)
Q Consensus 120 l~~~~~l~~~~~~-~~~l~~L~~L~l~~ 146 (169)
+++| .+..+... ...+.+++.+++++
T Consensus 169 l~~n-~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 169 LSYN-RIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred CCcc-hhhhhhhhhhhhccchHHHhccC
Confidence 5552 22222211 23444555555555
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=2.3e-06 Score=67.48 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=83.1
Q ss_pred CCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCccccccccccc-CCCCCCcEEEecCcccCCcc
Q 030897 28 RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKT-SSKDQLLEIHLEGTAIRGLP 106 (169)
Q Consensus 28 ~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~ 106 (169)
++.+..+..++.-++.++.|+++.| +.+... .+..++.|+.||+++ +.++.+|..- .++ .|..|.+++|.++++.
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNNALTTLR 248 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecccHHHhhh
Confidence 5666777788888899999999995 555444 467789999999999 4566666432 233 3899999999887754
Q ss_pred cccccCCCCCeEecCCCcccccCcc--cccCCCCCceEeccCCc
Q 030897 107 ASIELLSGNVLLNLKDCKNLKSLPS--TTNGLRSLRMLHLSGCS 148 (169)
Q Consensus 107 ~~~~~l~~L~~l~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~ 148 (169)
.+.++.+|+.||+++ |.+....+ .++.+..|..|++.+|+
T Consensus 249 -gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 345788999999998 45544432 24556778888888864
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=3e-05 Score=58.83 Aligned_cols=105 Identities=26% Similarity=0.235 Sum_probs=73.1
Q ss_pred cccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEe
Q 030897 40 LLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLN 119 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~ 119 (169)
.+..+..+.+.. +.++.....+..+.++..+++.+ +.++.+...+..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccch-hhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhhe
Confidence 455666666666 34444444466788888998888 4566565547778889999999998887543 23556688888
Q ss_pred cCCCcccccCcccccCCCCCceEeccCCcC
Q 030897 120 LKDCKNLKSLPSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 120 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 149 (169)
+.+ +.++.+.. +..++.|+.+++++|..
T Consensus 147 l~~-N~i~~~~~-~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 147 LSG-NLISDISG-LESLKSLKLLDLSYNRI 174 (414)
T ss_pred ecc-CcchhccC-CccchhhhcccCCcchh
Confidence 888 56666644 56678888888888543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00015 Score=54.46 Aligned_cols=87 Identities=28% Similarity=0.479 Sum_probs=60.9
Q ss_pred ccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCc-ccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCc
Q 030897 62 ISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLR 140 (169)
Q Consensus 62 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~ 140 (169)
+..+.+++.|++++| .+..+|. ...+|+.|.++++ .+..+|..+ ..+|+.|++++|..+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 345788999999997 6777772 2346999999885 666677644 468999999998788777754 45
Q ss_pred eEeccCC--cCCcccCcccCCc
Q 030897 141 MLHLSGC--SKLKNVPETLGKV 160 (169)
Q Consensus 141 ~L~l~~~--~~~~~~p~~~~~l 160 (169)
.|+++.+ ..+..+|.++..|
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred eEEeCCCCCcccccCcchHhhe
Confidence 5555542 3356677665544
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=5.1e-05 Score=54.24 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=37.7
Q ss_pred CCCCCcEEEecCcccCCc--ccccccCCCCCeEecCCCcccccCc--ccccCCCCCceEeccCCcCCc
Q 030897 88 SKDQLLEIHLEGTAIRGL--PASIELLSGNVLLNLKDCKNLKSLP--STTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 88 ~~~~L~~L~l~~~~l~~~--~~~~~~l~~L~~l~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~ 151 (169)
.++++..+.+..|.+++. .++....+.+..|+++. +.+..+. +.+.+++.|..+++++++..+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccc
Confidence 345666677777766653 23444556666677766 3444432 456667777777777766554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00062 Score=46.10 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=56.5
Q ss_pred hhcccccceeeecCccccccchhhc-cCCCCCCEEeeCCcccccccc--cccCCCCCCcEEEecCcccCCccc----ccc
Q 030897 38 IELLFRLVLLTLNGCKNLERLERTI-SVLKYLSTLKLSGLLKFREFP--EKTSSKDQLLEIHLEGTAIRGLPA----SIE 110 (169)
Q Consensus 38 ~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~ 110 (169)
|..++.|..|.+++ +.++.+...+ ..+++++.|.+.+|+ +..+. +.+..++.|++|.+-+|++.+... -++
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 55567788888887 4555554434 446778888888854 44443 456677888888888888776432 256
Q ss_pred cCCCCCeEecCC
Q 030897 111 LLSGNVLLNLKD 122 (169)
Q Consensus 111 ~l~~L~~l~l~~ 122 (169)
.+++|+.||..+
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 788888888764
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.25 E-value=0.0028 Score=39.77 Aligned_cols=117 Identities=9% Similarity=0.188 Sum_probs=57.5
Q ss_pred hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc-ccccCC
Q 030897 37 AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA-SIELLS 113 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~ 113 (169)
.|.++++|+.+.+.. .++.++. .+..+.+++.+.+.. . +..++ ..+..+.+++.+.+.. .+..++. .+...+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 567777888888874 4455543 466677888888876 3 55554 5677777788888865 4555553 355678
Q ss_pred CCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcccC-cccCCccch
Q 030897 114 GNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKNVP-ETLGKVESL 163 (169)
Q Consensus 114 ~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L 163 (169)
+++.+.+.. + +..++ ..+.++ +++.+.+.. .+..++ ..+.++++|
T Consensus 82 ~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETT-T--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccccCc-c-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 888888865 2 44554 356665 788877765 233344 345555544
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.19 E-value=5.7e-05 Score=56.09 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred cccccceeeecCccccccch-hhc-cCCCCCCEEeeCCcccccccc--cccCCCCCCcEEEecCcccCC---cccccccC
Q 030897 40 LLFRLVLLTLNGCKNLERLE-RTI-SVLKYLSTLKLSGLLKFREFP--EKTSSKDQLLEIHLEGTAIRG---LPASIELL 112 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~-~~~-~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~---~~~~~~~l 112 (169)
.+.+|+++..++|+..+... ..+ ...++|+++.+.+|+...... ..-.++.+|+.+++.++.... +-.--.+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34556666666665544332 122 345667777777766544332 223345666677666653321 22223356
Q ss_pred CCCCeEecCCCcccccC-----cccccCCCCCceEeccCCcCCc
Q 030897 113 SGNVLLNLKDCKNLKSL-----PSTTNGLRSLRMLHLSGCSKLK 151 (169)
Q Consensus 113 ~~L~~l~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~~~~~~ 151 (169)
+.|+++.+++|..++.. -....++..++.+.+++|+.+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 77777777766655443 1112345567777777776654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.0015 Score=44.26 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=60.7
Q ss_pred ccceeeecCccccccchhhccCCCCCCEEeeCCccccccccccc-CCCCCCcEEEecCcccCCccc--ccccCCCCCeEe
Q 030897 43 RLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKT-SSKDQLLEIHLEGTAIRGLPA--SIELLSGNVLLN 119 (169)
Q Consensus 43 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~--~~~~l~~L~~l~ 119 (169)
+...+++++| .+..++. +..++.|++|.+..| .+..+.+.+ ..++++..|.+.+|++.++.+ ....++.|+.|.
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4455666663 3333332 556777888888774 455554333 345678888888887776542 345667888887
Q ss_pred cCCCccccc--Ccc-cccCCCCCceEeccC
Q 030897 120 LKDCKNLKS--LPS-TTNGLRSLRMLHLSG 146 (169)
Q Consensus 120 l~~~~~l~~--~~~-~~~~l~~L~~L~l~~ 146 (169)
+-+|+.-.. ... .+..+++|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 776433221 111 345677788887655
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.91 E-value=0.0005 Score=29.31 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=9.7
Q ss_pred CcEEEecCcccCCccccc
Q 030897 92 LLEIHLEGTAIRGLPASI 109 (169)
Q Consensus 92 L~~L~l~~~~l~~~~~~~ 109 (169)
|++|++++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0095 Score=37.28 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=53.5
Q ss_pred hhccch-hhhcccccceeeecCccccccchh-hccCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCcccCCccc
Q 030897 31 IRELSF-AIELLFRLVLLTLNGCKNLERLER-TISVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGTAIRGLPA 107 (169)
Q Consensus 31 l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~ 107 (169)
++.++. .|..+++++.+.+.. .+..++. .+..+++++.+.+.. ....++ ..+..+++++.+.+..+ +..++.
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~ 97 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS 97 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHT
T ss_pred eeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEch
Confidence 455655 677888999999986 3555554 467777899999965 333444 56777899999999775 666654
Q ss_pred -ccccCCCCCeEecCCCcccccCc-ccccCCCCCc
Q 030897 108 -SIELLSGNVLLNLKDCKNLKSLP-STTNGLRSLR 140 (169)
Q Consensus 108 -~~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~ 140 (169)
.+.+. +++.+.+.. .+..++ ..+.++++|+
T Consensus 98 ~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 98 SSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred hhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 35565 888888764 344444 4666666653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00081 Score=47.06 Aligned_cols=102 Identities=23% Similarity=0.202 Sum_probs=58.8
Q ss_pred cccceeeecCccccccchhhccCCCCCCEEeeCCc--ccccccccccCCCCCCcEEEecCcccCCcc--cccccCCCCCe
Q 030897 42 FRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGL--LKFREFPEKTSSKDQLLEIHLEGTAIRGLP--ASIELLSGNVL 117 (169)
Q Consensus 42 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~ 117 (169)
..|+.+.+.++ .++.+.. +..+++|+.|.++.| .....++.....+++|+++++++|+++.+. .....+.+|..
T Consensus 43 ~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34555555542 2222222 455778888888886 333334455556688889999888776522 12345667777
Q ss_pred EecCCCcccccC--c-ccccCCCCCceEecc
Q 030897 118 LNLKDCKNLKSL--P-STTNGLRSLRMLHLS 145 (169)
Q Consensus 118 l~l~~~~~l~~~--~-~~~~~l~~L~~L~l~ 145 (169)
|++.+|.....- . ..+.-+++|..+|--
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 887776544311 1 134456666666543
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.64 E-value=0.0025 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=16.8
Q ss_pred CCCCcEEeccCCcCCcccCchHHh
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQV 24 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~~ 24 (169)
|++|+.+++|+|.+-..+|+.+..
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred CCcceeeeccccccCcccchHHHH
Confidence 577888888888866666655444
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.00091 Score=28.48 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=12.5
Q ss_pred CCceEeccCCcCCcccCcccCC
Q 030897 138 SLRMLHLSGCSKLKNVPETLGK 159 (169)
Q Consensus 138 ~L~~L~l~~~~~~~~~p~~~~~ 159 (169)
+|++|++++| .++.+|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566777775 44466665554
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.44 E-value=0.0051 Score=43.88 Aligned_cols=146 Identities=16% Similarity=0.059 Sum_probs=81.2
Q ss_pred CCCcEEeccCCcCCcccCchHHh-hccCCCh--------------hc-------cchhhhcccccceeeecCccccccch
Q 030897 2 KSLKTLVLSGCLKLKKFPDIVQV-LGDRTDI--------------RE-------LSFAIELLFRLVLLTLNGCKNLERLE 59 (169)
Q Consensus 2 ~~L~~l~ls~~~~l~~~p~~~~~-~~~~~~l--------------~~-------lp~~~~~l~~L~~l~l~~~~~~~~~~ 59 (169)
..++++++|+|..-++--+.+.. +..-.++ .+ +-..+..|++++..++++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46788999999855443333322 1111111 11 23346678999999999986655444
Q ss_pred ----hhccCCCCCCEEeeCCcccccccc--------------cccCCCCCCcEEEecCcccCCcccc-----cccCCCCC
Q 030897 60 ----RTISVLKYLSTLKLSGLLKFREFP--------------EKTSSKDQLLEIHLEGTAIRGLPAS-----IELLSGNV 116 (169)
Q Consensus 60 ----~~~~~~~~l~~l~l~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~l~~~~~~-----~~~l~~L~ 116 (169)
+.+++...+..|.+.+|. +..+. .....-|.|+......|++...+.. +..=..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 345677788888888754 32221 1133456777877777776554431 11113556
Q ss_pred eEecCCCcccccC------cccccCCCCCceEeccCCcC
Q 030897 117 LLNLKDCKNLKSL------PSTTNGLRSLRMLHLSGCSK 149 (169)
Q Consensus 117 ~l~l~~~~~l~~~------~~~~~~l~~L~~L~l~~~~~ 149 (169)
.+.+..| .++.- -..+..+.+|+.||+..|..
T Consensus 189 ~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 189 EVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred eEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 6655542 22211 01233456777777777543
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.37 E-value=0.0033 Score=24.92 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=6.6
Q ss_pred CCcEEEecCcccCCcc
Q 030897 91 QLLEIHLEGTAIRGLP 106 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~ 106 (169)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666665555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.00041 Score=49.36 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=59.7
Q ss_pred ccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCccc--ccccCCCCCeE
Q 030897 41 LFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA--SIELLSGNVLL 118 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~l~~L~~l 118 (169)
+.+.+.|+.++| .+.++.- ...|+.|++|.++-|. +..+ ..+..++.|++|++..|.|.++.+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvNk-IssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVNK-ISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-HHhcccceeEEeeccc-cccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445666777775 3443332 3457778888887743 3322 345667778888888887777664 35577777777
Q ss_pred ecCCCcccccCcc-----cccCCCCCceEe
Q 030897 119 NLKDCKNLKSLPS-----TTNGLRSLRMLH 143 (169)
Q Consensus 119 ~l~~~~~l~~~~~-----~~~~l~~L~~L~ 143 (169)
-+..|+....-+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7766555443322 234455555554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.72 E-value=0.0041 Score=47.75 Aligned_cols=110 Identities=31% Similarity=0.373 Sum_probs=60.6
Q ss_pred ccccceeeecCcccccc--chhhccCCCCCCEEeeCCc-ccccccc----cccCCCCCCcEEEecCcc-cCCcc--cccc
Q 030897 41 LFRLVLLTLNGCKNLER--LERTISVLKYLSTLKLSGL-LKFREFP----EKTSSKDQLLEIHLEGTA-IRGLP--ASIE 110 (169)
Q Consensus 41 l~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~-l~~~~--~~~~ 110 (169)
++.++.+.+.+|..+.. +......+++|+.+++++| ......+ .....+.+++.++++++. +++.- .-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666777776655554 2233455777777777662 2222221 223345667777777765 54421 1122
Q ss_pred cCCCCCeEecCCCccccc--CcccccCCCCCceEeccCCcCC
Q 030897 111 LLSGNVLLNLKDCKNLKS--LPSTTNGLRSLRMLHLSGCSKL 150 (169)
Q Consensus 111 ~l~~L~~l~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~ 150 (169)
.+++|+.|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 356777777666654322 2233445667777777777665
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.63 E-value=0.012 Score=25.94 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.5
Q ss_pred CCCCcEEeccCCcCCcccCchHH
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQ 23 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~ 23 (169)
+++|+.|++++|. ++.+|..++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5789999999886 887876553
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.63 E-value=0.012 Score=25.94 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.5
Q ss_pred CCCCcEEeccCCcCCcccCchHH
Q 030897 1 MKSLKTLVLSGCLKLKKFPDIVQ 23 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~~p~~~~ 23 (169)
+++|+.|++++|. ++.+|..++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5789999999886 887876553
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.0021 Score=43.51 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=38.3
Q ss_pred cceeeecCccccccchhhccCCCCCCEEeeCCcccccccc-cccC-CCCCCcEEEecCc-ccCCcc-cccccCCCCCeEe
Q 030897 44 LVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP-EKTS-SKDQLLEIHLEGT-AIRGLP-ASIELLSGNVLLN 119 (169)
Q Consensus 44 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~l~ 119 (169)
++.++.+++.....-.+.+..++.++.+.+.+|..+.++. +.++ ..++|+.|++++| +|++.. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4445555533333333344555666666666665555432 2222 2355666666665 454422 2344455555555
Q ss_pred cCC
Q 030897 120 LKD 122 (169)
Q Consensus 120 l~~ 122 (169)
+..
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.50 E-value=0.0072 Score=45.39 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=67.9
Q ss_pred cccccceeeecCccccccchhh--ccCCCCCCEEeeCCcccccccc--cccCCCCCCcEEEecCc-ccCCc--ccccccC
Q 030897 40 LLFRLVLLTLNGCKNLERLERT--ISVLKYLSTLKLSGLLKFREFP--EKTSSKDQLLEIHLEGT-AIRGL--PASIELL 112 (169)
Q Consensus 40 ~l~~L~~l~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~-~l~~~--~~~~~~l 112 (169)
.+.-+..+++..|..+++..-. -..+..++++..++|+.+.+.+ ...++..+|+.+-++++ +++.. ..--.+.
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 4455666677777666554321 1346677888887777655433 33455677888888877 34442 2223466
Q ss_pred CCCCeEecCCCccccc--CcccccCCCCCceEeccCCcCCcc
Q 030897 113 SGNVLLNLKDCKNLKS--LPSTTNGLRSLRMLHLSGCSKLKN 152 (169)
Q Consensus 113 ~~L~~l~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~ 152 (169)
++|+.+++.+|..... +.....+++.|+.+.+++|..+++
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 7788887777544432 233345677788888877766543
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.01 Score=42.96 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=35.6
Q ss_pred ccchhhhcccccceeeecCccccccchhhc-cCCCCCCEEeeCCccccc-ccccccCCCCCCcEEEecCccc
Q 030897 33 ELSFAIELLFRLVLLTLNGCKNLERLERTI-SVLKYLSTLKLSGLLKFR-EFPEKTSSKDQLLEIHLEGTAI 102 (169)
Q Consensus 33 ~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l 102 (169)
++-..+.++|.|+.|+++.|.....+ +++ ....+++++-+.+....+ ........+|.+++|+++.|++
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 34444556777777777764332222 222 235567777666522221 1223445566666666666643
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0011 Score=47.22 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcc--cccCCCCCceE
Q 030897 65 LKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPS--TTNGLRSLRML 142 (169)
Q Consensus 65 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~--~~~~l~~L~~L 142 (169)
+.+.+.|+..+|. +.++ .....|+.|+.|.++-|+|+.+.. +..+++|+.|++.. +.+..+.+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 5566778777754 3333 345678999999999999998643 45789999999987 56666643 36789999999
Q ss_pred eccCCcCCcc
Q 030897 143 HLSGCSKLKN 152 (169)
Q Consensus 143 ~l~~~~~~~~ 152 (169)
.+..|+=...
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 9998765443
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.72 E-value=0.015 Score=44.73 Aligned_cols=90 Identities=22% Similarity=0.215 Sum_probs=51.1
Q ss_pred hhhcccccceeeecC-ccccccch----hhccCCCCCCEEeeCCcccccccc--cccCCCCCCcEEEecCcc-cCC--cc
Q 030897 37 AIELLFRLVLLTLNG-CKNLERLE----RTISVLKYLSTLKLSGLLKFREFP--EKTSSKDQLLEIHLEGTA-IRG--LP 106 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~-~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-l~~--~~ 106 (169)
....++.|+.+++++ +......+ .....+++++.+++++|..+.+.. .....+++|+.|.+.++. +++ +-
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 445667777777776 22222222 122446677777777766444332 222336677777766664 443 22
Q ss_pred cccccCCCCCeEecCCCccc
Q 030897 107 ASIELLSGNVLLNLKDCKNL 126 (169)
Q Consensus 107 ~~~~~l~~L~~l~l~~~~~l 126 (169)
.....+++|+.|++++|..+
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhcCcccEEeeecCccc
Confidence 33445677777777777665
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.012 Score=40.02 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=46.8
Q ss_pred hhhcccccceeeecCccccccch-hhc-cCCCCCCEEeeCCcccccccc-cccCCCCCCcEEEecCc
Q 030897 37 AIELLFRLVLLTLNGCKNLERLE-RTI-SVLKYLSTLKLSGLLKFREFP-EKTSSKDQLLEIHLEGT 100 (169)
Q Consensus 37 ~~~~l~~L~~l~l~~~~~~~~~~-~~~-~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 100 (169)
.+.+++.++.+.+.+|....+.- +.+ +-.++|+.|++++|..+++.. ..+..+++|+.|.+.+-
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 35567788888899887776543 222 357899999999999888754 45666778888877653
No 77
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.49 E-value=0.084 Score=37.27 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=55.8
Q ss_pred CCCCCCEEeeCCcccccccccccCCCCCCcEEEecCc--ccCC-cccccccCCCCCeEecCCCcccccCc--ccccCCCC
Q 030897 64 VLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGT--AIRG-LPASIELLSGNVLLNLKDCKNLKSLP--STTNGLRS 138 (169)
Q Consensus 64 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~-~~~~~~~l~~L~~l~l~~~~~l~~~~--~~~~~l~~ 138 (169)
.+..++.+++.++.... + ..+..+++|+.|.++.| ++.. ++.-...+++|+++++++| .++.+- ..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 35556666665533222 1 34567789999999999 6654 6555556699999999984 444321 12456677
Q ss_pred CceEeccCCcCCc
Q 030897 139 LRMLHLSGCSKLK 151 (169)
Q Consensus 139 L~~L~l~~~~~~~ 151 (169)
|..|++..|....
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8889999876543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.24 E-value=0.00069 Score=47.04 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=61.2
Q ss_pred hccch-hhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccc
Q 030897 32 RELSF-AIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110 (169)
Q Consensus 32 ~~lp~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 110 (169)
.++|. .+......+.++++.+ ....+...+..+..+..++++. +.+...|+.+++...++.++.+.|+.+..|..++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 34453 3444556677777763 4444444455566677777776 4566677777777777777777777777888888
Q ss_pred cCCCCCeEecCCCc
Q 030897 111 LLSGNVLLNLKDCK 124 (169)
Q Consensus 111 ~l~~L~~l~l~~~~ 124 (169)
..+++++++..++.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 88888888777644
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.81 E-value=0.089 Score=23.10 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=11.2
Q ss_pred CCCCcEEeccCCcCCc
Q 030897 1 MKSLKTLVLSGCLKLK 16 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~ 16 (169)
+++|++|++++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677777777777554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.65 E-value=0.003 Score=43.97 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=66.0
Q ss_pred hccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCc
Q 030897 61 TISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLR 140 (169)
Q Consensus 61 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~ 140 (169)
.+.++...+.||++.+. .......+..++.+..++++.|.+.-+|+.++.+..++.++... +.+...|..++..+.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence 35667888889988854 33344555566777888999998888898888888887777665 67888888888889999
Q ss_pred eEeccCCc
Q 030897 141 MLHLSGCS 148 (169)
Q Consensus 141 ~L~l~~~~ 148 (169)
.+++.++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99888854
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.32 E-value=0.13 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.4
Q ss_pred CCcEEEecCcccCCccc
Q 030897 91 QLLEIHLEGTAIRGLPA 107 (169)
Q Consensus 91 ~L~~L~l~~~~l~~~~~ 107 (169)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777765
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.64 E-value=0.36 Score=20.53 Aligned_cols=13 Identities=38% Similarity=0.261 Sum_probs=7.9
Q ss_pred CCCCcEEeccCCc
Q 030897 1 MKSLKTLVLSGCL 13 (169)
Q Consensus 1 l~~L~~l~ls~~~ 13 (169)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4678888888876
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.85 E-value=0.69 Score=20.42 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=12.3
Q ss_pred CCCCcEEeccCCcCCcc
Q 030897 1 MKSLKTLVLSGCLKLKK 17 (169)
Q Consensus 1 l~~L~~l~ls~~~~l~~ 17 (169)
+++|++|++++|. ++.
T Consensus 1 L~~L~~L~L~~Nk-I~~ 16 (26)
T smart00365 1 LTNLEELDLSQNK-IKK 16 (26)
T ss_pred CCccCEEECCCCc-cce
Confidence 5789999999887 443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.46 E-value=1.8 Score=19.28 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=9.6
Q ss_pred CCCcEEeccCCc
Q 030897 2 KSLKTLVLSGCL 13 (169)
Q Consensus 2 ~~L~~l~ls~~~ 13 (169)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 578888888876
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.60 E-value=2.2 Score=33.72 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=15.3
Q ss_pred CCCcEEEecCcccCCccc---ccccCCCCCeEecCCC
Q 030897 90 DQLLEIHLEGTAIRGLPA---SIELLSGNVLLNLKDC 123 (169)
Q Consensus 90 ~~L~~L~l~~~~l~~~~~---~~~~l~~L~~l~l~~~ 123 (169)
+.+..+.++.|++..+.. -....++|..|++++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344445555554444321 1223455555555553
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.83 E-value=0.098 Score=40.70 Aligned_cols=12 Identities=42% Similarity=0.360 Sum_probs=6.8
Q ss_pred CCCcEEeccCCc
Q 030897 2 KSLKTLVLSGCL 13 (169)
Q Consensus 2 ~~L~~l~ls~~~ 13 (169)
.+|+.+++++|.
T Consensus 115 ~~L~~L~l~~n~ 126 (478)
T KOG4308|consen 115 PTLGQLDLSGNN 126 (478)
T ss_pred ccHhHhhcccCC
Confidence 345556666655
Done!