Query 030898
Match_columns 169
No_of_seqs 138 out of 183
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 06:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 4.8E-65 1E-69 412.4 15.7 167 1-169 1-167 (167)
2 PF14159 CAAD: CAAD domains of 100.0 3.9E-33 8.5E-38 206.3 8.9 88 77-167 3-90 (90)
3 PF14159 CAAD: CAAD domains of 87.7 1.2 2.6E-05 33.1 4.6 45 83-127 2-47 (90)
4 PF11351 DUF3154: Protein of u 75.5 11 0.00025 29.1 6.1 20 126-145 97-116 (123)
5 PF01810 LysE: LysE type trans 72.3 5.8 0.00013 31.1 3.9 37 116-152 48-85 (191)
6 PF13124 DUF3963: Protein of u 69.7 12 0.00027 24.3 4.2 29 80-111 11-39 (40)
7 PF10864 DUF2663: Protein of u 69.1 14 0.0003 29.7 5.3 30 85-114 9-41 (130)
8 PRK09304 arginine exporter pro 66.7 14 0.0003 30.1 5.1 34 113-146 56-89 (207)
9 PRK10958 leucine export protei 63.6 19 0.00041 29.5 5.4 34 113-146 63-96 (212)
10 PF11364 DUF3165: Protein of u 63.5 5.1 0.00011 29.9 1.8 52 101-152 29-80 (81)
11 TIGR00949 2A76 The Resistance 61.5 11 0.00024 29.5 3.5 35 112-146 40-74 (185)
12 PF08606 Prp19: Prp19/Pso4-lik 60.9 7.9 0.00017 28.1 2.3 19 74-92 2-20 (70)
13 PRK10323 cysteine/O-acetylseri 60.0 11 0.00023 30.5 3.3 51 97-147 42-93 (195)
14 PRK10520 rhtB homoserine/homos 59.2 12 0.00025 30.2 3.4 38 111-148 57-94 (205)
15 TIGR00948 2a75 L-lysine export 56.5 17 0.00036 28.6 3.7 37 111-147 40-76 (177)
16 PRK10229 threonine efflux syst 56.2 27 0.00058 28.0 5.0 34 113-146 58-91 (206)
17 PF05251 UPF0197: Uncharacteri 55.6 4.3 9.3E-05 29.9 0.2 36 122-157 16-51 (77)
18 PRK04949 putative sulfate tran 54.3 78 0.0017 27.3 7.8 77 53-142 101-178 (251)
19 PF11190 DUF2976: Protein of u 48.3 53 0.0012 24.6 5.1 64 80-146 14-81 (87)
20 PRK07193 fliF flagellar MS-rin 47.1 33 0.00072 33.0 4.8 33 77-109 4-40 (552)
21 PF01616 Orbi_NS3: Orbivirus N 45.7 80 0.0017 26.9 6.3 80 81-166 75-167 (195)
22 PF10958 DUF2759: Protein of u 42.1 23 0.0005 24.4 2.1 42 105-146 3-44 (52)
23 PF07787 DUF1625: Protein of u 39.3 82 0.0018 26.6 5.5 51 77-128 167-218 (248)
24 PF14372 DUF4413: Domain of un 38.7 54 0.0012 24.1 3.9 25 75-99 30-54 (101)
25 PF12911 OppC_N: N-terminal TM 38.0 80 0.0017 20.3 4.2 24 86-109 6-30 (56)
26 PF13779 DUF4175: Domain of un 36.4 67 0.0014 32.6 5.2 58 102-160 9-70 (820)
27 PF11833 DUF3353: Protein of u 36.3 60 0.0013 27.2 4.2 62 77-144 74-135 (194)
28 PF08285 DPM3: Dolichol-phosph 35.7 1.2E+02 0.0026 22.6 5.3 19 147-165 66-84 (91)
29 PF11712 Vma12: Endoplasmic re 35.3 75 0.0016 24.7 4.4 19 132-150 122-140 (142)
30 KOG4452 Predicted membrane pro 34.3 21 0.00046 26.3 1.1 35 122-156 18-53 (79)
31 COG1280 RhtB Putative threonin 33.7 31 0.00066 28.4 2.1 37 112-148 58-94 (208)
32 PF12729 4HB_MCP_1: Four helix 32.6 1.3E+02 0.0029 21.7 5.1 65 101-165 19-91 (181)
33 PF04418 DUF543: Domain of unk 31.0 1.2E+02 0.0026 22.0 4.6 30 84-113 17-49 (75)
34 KOG0289 mRNA splicing factor [ 30.9 39 0.00084 32.5 2.4 21 72-92 63-83 (506)
35 COG4956 Integral membrane prot 30.2 1.5E+02 0.0033 27.5 6.0 55 98-156 85-139 (356)
36 PRK06007 fliF flagellar MS-rin 29.3 92 0.002 29.8 4.7 31 77-107 4-36 (542)
37 PF11833 DUF3353: Protein of u 29.1 1.2E+02 0.0026 25.4 4.8 35 92-126 136-170 (194)
38 PF06072 Herpes_US9: Alphaherp 28.3 2.2E+02 0.0048 20.2 6.4 46 74-119 7-55 (60)
39 PF08711 Med26: TFIIS helical 27.9 1E+02 0.0022 19.8 3.4 50 115-165 2-51 (53)
40 PF04906 Tweety: Tweety; Inte 27.1 4.3E+02 0.0093 24.3 8.5 64 53-117 146-209 (406)
41 PRK09848 glucuronide transport 27.0 94 0.002 27.1 4.0 33 131-163 414-446 (448)
42 TIGR00206 fliF flagellar basal 26.6 1.2E+02 0.0026 29.1 5.0 16 78-93 5-20 (555)
43 PF10192 GpcrRhopsn4: Rhodopsi 26.4 68 0.0015 27.1 3.0 70 92-161 170-248 (257)
44 TIGR03745 conj_TIGR03745 integ 26.2 2.6E+02 0.0055 21.8 5.8 40 80-122 30-69 (104)
45 PF05385 Adeno_E4: Mastadenovi 25.1 38 0.00082 26.6 1.1 10 32-41 2-11 (109)
46 TIGR00766 ribonuclease, putati 24.7 1.7E+02 0.0038 24.4 5.1 22 101-122 85-110 (263)
47 PF03904 DUF334: Domain of unk 24.6 2.2E+02 0.0048 25.0 5.8 43 77-119 128-170 (230)
48 PF06295 DUF1043: Protein of u 24.4 66 0.0014 24.9 2.4 26 139-164 14-40 (128)
49 PF06522 B12D: NADH-ubiquinone 24.4 28 0.0006 24.7 0.2 19 132-150 15-33 (73)
50 PF10256 Erf4: Golgin subfamil 23.1 3.2E+02 0.0068 20.2 7.0 40 75-114 32-73 (118)
51 PF13706 PepSY_TM_3: PepSY-ass 22.7 1.7E+02 0.0037 18.0 3.6 23 97-119 9-31 (37)
52 COG4280 Predicted membrane pro 21.9 1E+02 0.0022 27.0 3.2 70 77-148 16-85 (236)
53 PF10710 DUF2512: Protein of u 21.0 64 0.0014 25.7 1.7 60 91-151 55-115 (136)
54 PF09183 DUF1947: Domain of un 21.0 68 0.0015 23.0 1.6 21 143-163 2-22 (65)
55 KOG2927 Membrane component of 20.9 59 0.0013 30.3 1.7 46 103-148 225-282 (372)
56 PF04367 DUF502: Protein of un 20.8 2.4E+02 0.0053 20.9 4.7 31 98-128 10-40 (108)
57 PF14257 DUF4349: Domain of un 20.5 4.4E+02 0.0096 22.1 6.8 15 80-94 217-231 (262)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=4.8e-65 Score=412.38 Aligned_cols=167 Identities=84% Similarity=1.274 Sum_probs=163.8
Q ss_pred CCccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHhcCCcccccccchhH
Q 030898 1 MASSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPE 80 (169)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~LPp~~~~s~~~~~~~~~~~~~~~r~v~~~a~~~~~~e~~~~~lpE 80 (169)
|++ |++++||+++|+|+|++++++++||.+||.||||+.++|+|+||+++||||++|+|+.|++||+++++++++++|
T Consensus 1 ~~~--l~~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~e 78 (167)
T PLN02777 1 MTP--LSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPE 78 (167)
T ss_pred CCc--cccccccccccCCCCCcCcccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHH
Confidence 444 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHHHHHHHHHh
Q 030898 81 IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKD 160 (169)
Q Consensus 81 ~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~ 160 (169)
+++++||+||++|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||+++|++
T Consensus 79 i~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~ 158 (167)
T PLN02777 79 IVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKD 158 (167)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCC
Q 030898 161 TYKDIIGSS 169 (169)
Q Consensus 161 lk~~I~G~s 169 (169)
+|++|+|+|
T Consensus 159 lk~~IlG~s 167 (167)
T PLN02777 159 TYKEIIGSS 167 (167)
T ss_pred HHHHhhCCC
Confidence 999999986
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=100.00 E-value=3.9e-33 Score=206.26 Aligned_cols=88 Identities=42% Similarity=0.856 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHHHHHH
Q 030898 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQ 156 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ 156 (169)
++++.++++ |++|++++..+++++++++++|++.+|++|||+||++|++|||||+||++||+||||+|++|||||.+
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~ 79 (90)
T PF14159_consen 3 KLPEYWGEF---FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQ 79 (90)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHH
Confidence 345555544 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcC
Q 030898 157 KIKDTYKDIIG 167 (169)
Q Consensus 157 ki~~lk~~I~G 167 (169)
+++++|++|+|
T Consensus 80 ~i~~~k~~i~G 90 (90)
T PF14159_consen 80 KIQSLKKEILG 90 (90)
T ss_pred HHHHHHHHhcC
Confidence 99999999998
No 3
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=87.74 E-value=1.2 Score=33.07 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCchh
Q 030898 83 KTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISA-IDRLPLVPG 127 (169)
Q Consensus 83 ~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~A-Id~IPLlp~ 127 (169)
+++++.|++.++++....+.+++++++-+..-+..+ +|.|--+|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPl 47 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPL 47 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 578999999999999999999998887777666554 566655553
No 4
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=75.54 E-value=11 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.6
Q ss_pred hhhHhhhhhheeehhhhhhc
Q 030898 126 PGVLELVGIGYTGWFAYKNL 145 (169)
Q Consensus 126 p~llELVGigyt~WFvyRyL 145 (169)
.++..|.|+|++++|+.|..
T Consensus 97 e~lw~Llg~~vlgy~~~Rs~ 116 (123)
T PF11351_consen 97 EPLWWLLGAGVLGYFGARSQ 116 (123)
T ss_pred HHHHHHHHHHHhhhHHHhhH
Confidence 47889999999999999954
No 5
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=72.26 E-value=5.8 Score=31.11 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHh-hcCCCchhhHhhhhhheeehhhhhhcccchhHH
Q 030898 116 ISAI-DRLPLVPGVLELVGIGYTGWFAYKNLVFKPDRE 152 (169)
Q Consensus 116 l~AI-d~IPLlp~llELVGigyt~WFvyRyLL~~~~R~ 152 (169)
+.++ +..|.+-..++++|..|..|+.|+.+..+.+.+
T Consensus 48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 3444 669999999999999999999999987655443
No 6
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=69.68 E-value=12 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030898 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWG 111 (169)
Q Consensus 80 E~v~~l~e~wd~~e~k~~v~~li~aaiVal~v 111 (169)
.++.++|.. .++.--.+++.+.++|++|+
T Consensus 11 ryfddiqkw---irnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 11 RYFDDIQKW---IRNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 455566544 44555677888899999995
No 7
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=69.06 E-value=14 Score=29.66 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=17.1
Q ss_pred HHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Q 030898 85 VQEAWDKVEDKYA---VTSLAVTVAIAVWGSTG 114 (169)
Q Consensus 85 l~e~wd~~e~k~~---v~~li~aaiVal~v~~~ 114 (169)
=+++||+++.+-. .++++..++..+.++..
T Consensus 9 rK~K~e~l~k~~~~~~~~~l~~~~~~~~y~~~~ 41 (130)
T PF10864_consen 9 RKEKWERLKKQHLFWQWLFLFSLFLFFIYFYIK 41 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999998643 44444444444444333
No 8
>PRK09304 arginine exporter protein; Provisional
Probab=66.70 E-value=14 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.374 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCchhhHhhhhhheeehhhhhhcc
Q 030898 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 113 ~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL 146 (169)
.++-.-++..|.+=.++.++|-.|..|..|+-+-
T Consensus 56 ~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 56 FGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333447899999999999999999999998664
No 9
>PRK10958 leucine export protein LeuE; Provisional
Probab=63.57 E-value=19 Score=29.48 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCchhhHhhhhhheeehhhhhhcc
Q 030898 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 113 ~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL 146 (169)
.++-.-++..|.+-..++++|.+|..|+.||-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788999999999999999999998663
No 10
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=63.52 E-value=5.1 Score=29.89 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHH
Q 030898 101 LAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDRE 152 (169)
Q Consensus 101 li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~ 152 (169)
+++.+++++-+..++++.+.-.-+-|-+|=-+|+...++|.+|.+.+=++|+
T Consensus 29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 4556677777888889999988888999999999999999999887766553
No 11
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=61.45 E-value=11 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcc
Q 030898 112 STGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 112 ~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL 146 (169)
..++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 40 ~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 40 LLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788999999999999999999998664
No 12
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=60.86 E-value=7.9 Score=28.13 Aligned_cols=19 Identities=37% Similarity=0.863 Sum_probs=16.1
Q ss_pred cccchhHHHHHHHHHHHhh
Q 030898 74 AATELPEIVKTVQEAWDKV 92 (169)
Q Consensus 74 ~~~~lpE~v~~l~e~wd~~ 92 (169)
+.++.|.+++.||+.||.+
T Consensus 2 ~~~SIP~lL~~lQnEWDa~ 20 (70)
T PF08606_consen 2 TATSIPSLLSTLQNEWDAL 20 (70)
T ss_pred CcCcHHHHHHHHHHHHHHH
Confidence 3568999999999999954
No 13
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=60.00 E-value=11 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCchhhHhhhhhheeehhhhhhccc
Q 030898 97 AVTSLAVTVAIAVWGSTGMI-SAIDRLPLVPGVLELVGIGYTGWFAYKNLVF 147 (169)
Q Consensus 97 ~v~~li~aaiVal~v~~~Vl-~AId~IPLlp~llELVGigyt~WFvyRyLL~ 147 (169)
..+|...|-++-..+..+.+ .-++..|.+=.++.++|..|..|..||-+..
T Consensus 42 ~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 42 VLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555444444445 3456889999999999999999999997754
No 14
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=59.21 E-value=12 Score=30.16 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccc
Q 030898 111 GSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFK 148 (169)
Q Consensus 111 v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~ 148 (169)
...++-.-++..|.+=.+++++|-.|..|+.+|-+..+
T Consensus 57 ~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 57 VGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33555556788899999999999999999999977543
No 15
>TIGR00948 2a75 L-lysine exporter.
Probab=56.52 E-value=17 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhccc
Q 030898 111 GSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVF 147 (169)
Q Consensus 111 v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~ 147 (169)
...++-.-++..|.+=..+.++|-.|..|..||-+..
T Consensus 40 ~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 40 GVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667899999999999999999999987753
No 16
>PRK10229 threonine efflux system; Provisional
Probab=56.17 E-value=27 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCchhhHhhhhhheeehhhhhhcc
Q 030898 113 TGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 113 ~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL 146 (169)
.++-.-+...|.+-.++.++|..|..|+.|+-+.
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788999999999999999999998775
No 17
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=55.62 E-value=4.3 Score=29.92 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCCchhhHhhhhhheeehhhhhhcccchhHHHHHHH
Q 030898 122 LPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQK 157 (169)
Q Consensus 122 IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~k 157 (169)
.|.+.-+|=.+|+.+++||........+.++.+.++
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 355666778899999999998888865554444443
No 18
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=54.32 E-value=78 Score=27.28 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhHhh
Q 030898 53 YCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVP-GVLEL 131 (169)
Q Consensus 53 ~~~~~~r~v~~~a~~~~~~e~~~~~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp-~llEL 131 (169)
+...+|.+|-...+|+...+ ..+.+.++++ +....+.+..+.+.+.-.+++- .+.-||.++ .+-=+
T Consensus 101 F~~~lAE~VE~~l~g~~~~~---~~~~~~~~~~---~r~l~~el~kl~y~l~~~i~ll-------ll~fIP~vg~~~~pv 167 (251)
T PRK04949 101 FNGLLAEKVEARLTGETLPD---TGIAGLVKDV---PRILKREWQKLAYYLPRAIVLL-------LLSFIPVVGQTVAPV 167 (251)
T ss_pred HhHHHHHHHHHHcCCCCCCC---CchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhccHHHHH
Confidence 55788889988888873321 1233444433 4444444444444433333322 134567775 22235
Q ss_pred hhhheeehhhh
Q 030898 132 VGIGYTGWFAY 142 (169)
Q Consensus 132 VGigyt~WFvy 142 (169)
++.++++|+.-
T Consensus 168 l~~~~~awll~ 178 (251)
T PRK04949 168 LWFLFSAWMMA 178 (251)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 19
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=48.28 E-value=53 Score=24.57 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CchhhHhhhhhheeehhhhhhcc
Q 030898 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLP----LVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 80 E~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IP----Llp~llELVGigyt~WFvyRyLL 146 (169)
++++.++.- .+|-..+++++++++..+++..+.+++-|++- =-..+-..+.+|...-++.=||+
T Consensus 14 ~~~~~i~~y---~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 14 GIMETIKGY---AKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 444555443 55778899999999999999999999888763 23344444444444444433333
No 20
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=47.11 E-value=33 Score=33.00 Aligned_cols=33 Identities=6% Similarity=0.352 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH
Q 030898 77 ELPEIVKTVQEAWDKVE----DKYAVTSLAVTVAIAV 109 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e----~k~~v~~li~aaiVal 109 (169)
.++++++.+++.|.++. .+..+++.++++++++
T Consensus 4 ~~~~~~~~l~~~w~~l~~l~~~r~~~l~~~~~~~va~ 40 (552)
T PRK07193 4 LMNDMLDKLKQKWSPFQLLRGNRKLILLALLALLVAA 40 (552)
T ss_pred hHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 45688999999999884 3333344444444443
No 21
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=45.65 E-value=80 Score=26.92 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHh-hcCCCchhhHh----------hhhhheeehhhhhhccc
Q 030898 81 IVKTVQEAWDKVEDKYAVTSL--AVTVAIAVWGSTGMISAI-DRLPLVPGVLE----------LVGIGYTGWFAYKNLVF 147 (169)
Q Consensus 81 ~v~~l~e~wd~~e~k~~v~~l--i~aaiVal~v~~~Vl~AI-d~IPLlp~llE----------LVGigyt~WFvyRyLL~ 147 (169)
++..++.+..+.+.++.++-+ ++.++|++- ..++.++ |-.+.++..++ .|=++. ..-.+.-
T Consensus 75 ~L~~L~~el~~~kRk~~il~~~~li~a~v~l~--ts~~~~~~~~~~~~~~~l~~~~~~~~~~~~inL~~----T~~~~~~ 148 (195)
T PF01616_consen 75 ILPKLKHELRKLKRKRRILHIVELIAAIVALL--TSVVMAISDMSPELKSNLKEKNWISITLHVINLIA----TTAMMFC 148 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHH
Confidence 444566667777777654433 333333332 2222222 22223333333 222222 2223334
Q ss_pred chhHHHHHHHHHhhhhhhc
Q 030898 148 KPDREALIQKIKDTYKDII 166 (169)
Q Consensus 148 ~~~R~eL~~ki~~lk~~I~ 166 (169)
+..|+.|-++++.+|++|.
T Consensus 149 ~r~~~~l~~~i~r~kkeI~ 167 (195)
T PF01616_consen 149 ARIERSLQEQIKRLKKEIM 167 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999985
No 22
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=42.10 E-value=23 Score=24.44 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcc
Q 030898 105 VAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 105 aiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL 146 (169)
++|++-...+++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677888888888888999999999999999865443
No 23
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=39.26 E-value=82 Score=26.57 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCchhh
Q 030898 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISA-IDRLPLVPGV 128 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~A-Id~IPLlp~l 128 (169)
...|++...++.=...-..++.+|++ ..++++.+....|.. +|-+|++..+
T Consensus 167 s~~e~f~~~~~~n~~~tW~lR~~G~l-lmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 167 SAEEMFAKEHSANNTLTWILRFIGWL-LMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhceeech
Confidence 33566664433211111234444433 345567777777766 4889998863
No 24
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=38.75 E-value=54 Score=24.10 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.2
Q ss_pred ccchhHHHHHHHHHHHhhhhhHHHH
Q 030898 75 ATELPEIVKTVQEAWDKVEDKYAVT 99 (169)
Q Consensus 75 ~~~lpE~v~~l~e~wd~~e~k~~v~ 99 (169)
...+-+..+.+++++|+|.+..-.+
T Consensus 30 d~~l~~ma~~M~~KfdKYw~~~~~~ 54 (101)
T PF14372_consen 30 DPDLKNMAKKMKEKFDKYWKDCNLL 54 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3477889999999999999866554
No 25
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=37.97 E-value=80 Score=20.27 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=13.4
Q ss_pred HHHHHhhh-hhHHHHHHHHHHHHHH
Q 030898 86 QEAWDKVE-DKYAVTSLAVTVAIAV 109 (169)
Q Consensus 86 ~e~wd~~e-~k~~v~~li~aaiVal 109 (169)
++.|.++. +|.+++|+++-+++.+
T Consensus 6 ~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 6 KDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34455554 5777777655444433
No 26
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=36.43 E-value=67 Score=32.58 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhH----hhhhhheeehhhhhhcccchhHHHHHHHHHh
Q 030898 102 AVTVAIAVWGSTGMISAIDRLPLVPGVL----ELVGIGYTGWFAYKNLVFKPDREALIQKIKD 160 (169)
Q Consensus 102 i~aaiVal~v~~~Vl~AId~IPLlp~ll----ELVGigyt~WFvyRyLL~~~~R~eL~~ki~~ 160 (169)
-+.+++++.++..+++.-+.+|...-.. =++|++++.||-.|.+ +.++|.|....|+.
T Consensus 9 p~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrf-r~Pt~~ea~~RLe~ 70 (820)
T PF13779_consen 9 PLLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRF-RWPTRAEALRRLER 70 (820)
T ss_pred HHHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHhh
Confidence 3445555556666666666776643222 3456666666666664 88999999998875
No 27
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=36.27 E-value=60 Score=27.18 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhh
Q 030898 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKN 144 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRy 144 (169)
..|..++.+...|+..+..-...-.++-+++++|.... .-+=.|++.=-+|++.+.||.+|.
T Consensus 74 ~~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~------~~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 74 PSPPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLF------PAASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred ccchHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHH------cCCCCcchHHHHHHHHHHHHHHHh
Confidence 34455555544456555544455555556666665544 133344555568999999999986
No 28
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=35.70 E-value=1.2e+02 Score=22.62 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHhhhhhh
Q 030898 147 FKPDREALIQKIKDTYKDI 165 (169)
Q Consensus 147 ~~~~R~eL~~ki~~lk~~I 165 (169)
..+..+||.++|++-|++.
T Consensus 66 cpeA~~eL~~eI~eAK~dL 84 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKADL 84 (91)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4577899999999998875
No 29
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.34 E-value=75 Score=24.73 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=10.4
Q ss_pred hhhheeehhhhhhcccchh
Q 030898 132 VGIGYTGWFAYKNLVFKPD 150 (169)
Q Consensus 132 VGigyt~WFvyRyLL~~~~ 150 (169)
+.++-=+||..+|+-+-++
T Consensus 122 ~vlvAEv~l~~~y~~k~e~ 140 (142)
T PF11712_consen 122 LVLVAEVVLYIRYLRKVEE 140 (142)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3333345777777765443
No 30
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=34.31 E-value=21 Score=26.25 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCCchhhHhhhhhheeehhhhhhcc-cchhHHHHHH
Q 030898 122 LPLVPGVLELVGIGYTGWFAYKNLV-FKPDREALIQ 156 (169)
Q Consensus 122 IPLlp~llELVGigyt~WFvyRyLL-~~~~R~eL~~ 156 (169)
.|.+..+|--||+.+++||..--.. .|.+|.-+.+
T Consensus 18 fPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KE 53 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKE 53 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHH
Confidence 5778888889999999998654333 4556644333
No 31
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=33.73 E-value=31 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccc
Q 030898 112 STGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFK 148 (169)
Q Consensus 112 ~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~ 148 (169)
..|+-.-+..-|.+-.++.++|-.|..|..|+-+..+
T Consensus 58 ~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 58 ALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344466788899999999999999999999977744
No 32
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=32.56 E-value=1.3e+02 Score=21.72 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----CCCchhhHhhhhhheeehh-hhhhccc--chhHHHHHHHHHhhhhhh
Q 030898 101 LAVTVAIAVWGSTGMISAIDR-----LPLVPGVLELVGIGYTGWF-AYKNLVF--KPDREALIQKIKDTYKDI 165 (169)
Q Consensus 101 li~aaiVal~v~~~Vl~AId~-----IPLlp~llELVGigyt~WF-vyRyLL~--~~~R~eL~~ki~~lk~~I 165 (169)
+++.++++++-...+-+.++. +|-+-.+-++-.-.+-..- .+++++. .++|+++.+++++..+++
T Consensus 19 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (181)
T PF12729_consen 19 LLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEI 91 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443 4444455555555544433 4444444 345666666666655543
No 33
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=31.05 E-value=1.2e+02 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhH---HHHHHHHHHHHHHHHHH
Q 030898 84 TVQEAWDKVEDKY---AVTSLAVTVAIAVWGST 113 (169)
Q Consensus 84 ~l~e~wd~~e~k~---~v~~li~aaiVal~v~~ 113 (169)
.+.++||..=+.. ...|+++|++.++++.-
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 6778899866544 45667777777776653
No 34
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.89 E-value=39 Score=32.50 Aligned_cols=21 Identities=43% Similarity=0.852 Sum_probs=17.6
Q ss_pred cccccchhHHHHHHHHHHHhh
Q 030898 72 EVAATELPEIVKTVQEAWDKV 92 (169)
Q Consensus 72 e~~~~~lpE~v~~l~e~wd~~ 92 (169)
+++.+.+|.+++.||+.||.+
T Consensus 63 ~~satSIPalL~~lQdEWDav 83 (506)
T KOG0289|consen 63 PPSATSIPALLKTLQDEWDAV 83 (506)
T ss_pred CCCccchHHHHHHHHHHHHHH
Confidence 456678899999999999954
No 35
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=30.23 E-value=1.5e+02 Score=27.50 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHHHHHH
Q 030898 98 VTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQ 156 (169)
Q Consensus 98 v~~li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ 156 (169)
.+|+++|.+++.-+++-+ -.-.+|++..++-.++-...++|.+++-.++ |+|+..
T Consensus 85 tiGLiiGLlia~l~~~pL--~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~--~de~~~ 139 (356)
T COG4956 85 TIGLIIGLLIAVLLSSPL--FLLPIPFISTIIPVILTIILAYFGFQLADKK--RDEFLR 139 (356)
T ss_pred HHHHHHHHHHHHHHhhHH--hhCCccHHHhHHHHHHHHHHHHHhhHHhhhh--hHHHHH
Confidence 444444444444433311 2335788999999999999999998876543 445443
No 36
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=29.26 E-value=92 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHhhhh--hHHHHHHHHHHHH
Q 030898 77 ELPEIVKTVQEAWDKVED--KYAVTSLAVTVAI 107 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~--k~~v~~li~aaiV 107 (169)
.+.+++..+.+.|.++.. ++.+++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~l~~~qk~~l~~~~~~~v~ 36 (542)
T PRK06007 4 KLKELMEKLKEFLQKLSKKRKIALIGAGAAVVA 36 (542)
T ss_pred hHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 456788888889987653 4444443333333
No 37
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=29.07 E-value=1.2e+02 Score=25.36 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 030898 92 VEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVP 126 (169)
Q Consensus 92 ~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp 126 (169)
-++....+++.+++++.-|+.++++...-..+++|
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 33455788899999999999999998777666655
No 38
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=28.34 E-value=2.2e+02 Score=20.21 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=26.6
Q ss_pred cccchhHHHHHHHHHHHhhhh-h--HHHHHHHHHHHHHHHHHHHHHHHh
Q 030898 74 AATELPEIVKTVQEAWDKVED-K--YAVTSLAVTVAIAVWGSTGMISAI 119 (169)
Q Consensus 74 ~~~~lpE~v~~l~e~wd~~e~-k--~~v~~li~aaiVal~v~~~Vl~AI 119 (169)
.++...|++..+-.+=.+.+. + -.+..+++.+++++-++++.++++
T Consensus 7 DnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 7 DNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred ccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566888777443212222 1 233445566666778888888876
No 39
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=27.89 E-value=1e+02 Score=19.79 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=35.1
Q ss_pred HHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHHHHHHHHHhhhhhh
Q 030898 115 MISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDI 165 (169)
Q Consensus 115 Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~~I 165 (169)
+|+.++++|+=...|+=-|||-++-+..++ -..++=+++...+-.-|+++
T Consensus 2 iL~~L~~l~it~~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~ 51 (53)
T PF08711_consen 2 ILKVLEKLPITVELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRI 51 (53)
T ss_dssp HHHHHHCSS-SHHHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHh
Confidence 578899999989999999999999999999 33333344455554444443
No 40
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=27.12 E-value=4.3e+02 Score=24.29 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 030898 53 YCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMIS 117 (169)
Q Consensus 53 ~~~~~~r~v~~~a~~~~~~e~~~~~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~ 117 (169)
..++.+.+++..+.+=.--...+.+++++.++. +.|+.|+....++.+++..++.++...|+..
T Consensus 146 ~~~~~~~~v~~~l~~l~~~~~~~~~l~~~~~~~-~~~E~yRw~~~~~lL~l~l~icl~~l~glar 209 (406)
T PF04906_consen 146 FLQQQAENVVQQLDELPFWRNVSLSLEQLAEQV-SFYEYYRWLAYLGLLILDLVICLLGLLGLAR 209 (406)
T ss_pred HHHHHHHHHHHHHhcCcccccCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555543221122344554444433 5566677776666677777777776666653
No 41
>PRK09848 glucuronide transporter; Provisional
Probab=27.02 E-value=94 Score=27.13 Aligned_cols=33 Identities=6% Similarity=-0.104 Sum_probs=25.6
Q ss_pred hhhhheeehhhhhhcccchhHHHHHHHHHhhhh
Q 030898 131 LVGIGYTGWFAYKNLVFKPDREALIQKIKDTYK 163 (169)
Q Consensus 131 LVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~ 163 (169)
.+.+.....+.++|=+.+++.+|+.+++++.++
T Consensus 414 ~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~~~~ 446 (448)
T PRK09848 414 CGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKK 446 (448)
T ss_pred HHHHHHHHHHHHHeeCCHHHHHHHHHHHHHhhh
Confidence 344555556778999999999999999988664
No 42
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=26.57 E-value=1.2e+02 Score=29.11 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHhhh
Q 030898 78 LPEIVKTVQEAWDKVE 93 (169)
Q Consensus 78 lpE~v~~l~e~wd~~e 93 (169)
+..+.+.+++.|.++.
T Consensus 5 ~~~~~~~~~~~~~~l~ 20 (555)
T TIGR00206 5 FTQFKVSAKEFFKKLS 20 (555)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4466667778888765
No 43
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=26.45 E-value=68 Score=27.09 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCchhhHhhhhhheeehhhhh-------hcccchhHHHHHHHHHhh
Q 030898 92 VEDKYAVTSLAVTVAIAVWGSTGMISAI--DRLPLVPGVLELVGIGYTGWFAYK-------NLVFKPDREALIQKIKDT 161 (169)
Q Consensus 92 ~e~k~~v~~li~aaiVal~v~~~Vl~AI--d~IPLlp~llELVGigyt~WFvyR-------yLL~~~~R~eL~~ki~~l 161 (169)
||.......+++=.++++|...+...++ .+=|.--.++-.-|++++.||.+- +.+.+=-|++++.-++.+
T Consensus 170 y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v~~~~R~kvv~~~~~~ 248 (257)
T PF10192_consen 170 YDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHFVDPWVREKVVTGGNLL 248 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445555555666668888889999988 888988899999999999999852 345666677766655443
No 44
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=26.22 E-value=2.6e+02 Score=21.80 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030898 80 EIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRL 122 (169)
Q Consensus 80 E~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~I 122 (169)
.+++.+|+- .+|-..+++++++++..+++..+.+.+-+.+
T Consensus 30 g~~~tik~Y---~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 30 GIMQTIKNY---GYDGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666555 4577888999999999999988888877665
No 45
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=25.06 E-value=38 Score=26.60 Aligned_cols=10 Identities=80% Similarity=1.707 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 030898 32 SLPTLPPPPV 41 (169)
Q Consensus 32 ~lp~LPp~~~ 41 (169)
.||.|||||+
T Consensus 2 ~LP~LPpPPv 11 (109)
T PF05385_consen 2 PLPSLPPPPV 11 (109)
T ss_pred CCCCCCCCCC
Confidence 4899999996
No 46
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=24.69 E-value=1.7e+02 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHH----HHHHHHhhcC
Q 030898 101 LAVTVAIAVWGS----TGMISAIDRL 122 (169)
Q Consensus 101 li~aaiVal~v~----~~Vl~AId~I 122 (169)
.+++.++++|.+ .++-.++|++
T Consensus 85 ~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 85 GLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666654 4445556655
No 47
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.62 E-value=2.2e+02 Score=25.00 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 030898 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAI 119 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AI 119 (169)
+...++..++..-++|+..+..+-.++++++++.++.+++-.+
T Consensus 128 e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 128 ENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4556666677778888888888888888887777777777654
No 48
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.40 E-value=66 Score=24.91 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=10.9
Q ss_pred hhhhhhcccc-hhHHHHHHHHHhhhhh
Q 030898 139 WFAYKNLVFK-PDREALIQKIKDTYKD 164 (169)
Q Consensus 139 WFvyRyLL~~-~~R~eL~~ki~~lk~~ 164 (169)
||+.|..-.+ .+..+|-+.++..+.+
T Consensus 14 ~~~~r~~~~~~~~q~~l~~eL~~~k~e 40 (128)
T PF06295_consen 14 FLIGRLTSSNQQKQAKLEQELEQAKQE 40 (128)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 3444444433 2223444444444443
No 49
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=24.38 E-value=28 Score=24.65 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=13.4
Q ss_pred hhhheeehhhhhhcccchh
Q 030898 132 VGIGYTGWFAYKNLVFKPD 150 (169)
Q Consensus 132 VGigyt~WFvyRyLL~~~~ 150 (169)
+|++..++|.+|+|+..+|
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3445666999999976554
No 50
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=23.12 E-value=3.2e+02 Score=20.22 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=23.5
Q ss_pred ccchhHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH
Q 030898 75 ATELPEIVKTVQEAWDKVEDKYA--VTSLAVTVAIAVWGSTG 114 (169)
Q Consensus 75 ~~~lpE~v~~l~e~wd~~e~k~~--v~~li~aaiVal~v~~~ 114 (169)
.+|+.++++++++...+..+++. .+.-.+-++++++++.-
T Consensus 32 ~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~ 73 (118)
T PF10256_consen 32 PEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSL 73 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34889999999888777755532 22233333444444443
No 51
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.69 E-value=1.7e+02 Score=18.02 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030898 97 AVTSLAVTVAIAVWGSTGMISAI 119 (169)
Q Consensus 97 ~v~~li~aaiVal~v~~~Vl~AI 119 (169)
..+|+++|.++.+|..+|.+-..
T Consensus 9 ~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 57899999999999999887654
No 52
>COG4280 Predicted membrane protein [Function unknown]
Probab=21.86 E-value=1e+02 Score=27.02 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccc
Q 030898 77 ELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFK 148 (169)
Q Consensus 77 ~lpE~v~~l~e~wd~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~ 148 (169)
|+-|++.=.--.=..+..+.+..+-++|..+.+.+...+-.-+--+|+ ..+++|-=+-..||.||.+-+.
T Consensus 16 ElvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~lvPl--n~lqiv~gvLLllFG~rw~Rsa 85 (236)
T COG4280 16 ELVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLYLVPL--NYLQIVSGVLLLLFGYRWIRSA 85 (236)
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccceeeeec--hHHHHHHHHHHHHHHHHHHHHH
Confidence 444544432222223556677777666666666666666666666676 3466666666789999987543
No 53
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=20.98 E-value=64 Score=25.66 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=45.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhhHhhhhhheeehhhhhhcccchhH
Q 030898 91 KVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPL-VPGVLELVGIGYTGWFAYKNLVFKPDR 151 (169)
Q Consensus 91 ~~e~k~~v~~li~aaiVal~v~~~Vl~AId~IPL-lp~llELVGigyt~WFvyRyLL~~~~R 151 (169)
++.|..++++=++-+.+.+|+....+.. +..+. ...++=-+.++..=||.=|||.+..-+
T Consensus 55 r~gN~~AtiaD~~La~~~iW~~~~~~~~-~~~~~~~~allsA~~i~v~E~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 55 RTGNIVATIADFGLAFLVIWLMGYILTG-NYVSIAWAALLSAVLIGVGEYFFHRYLLRNVLR 115 (136)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567778888888889999999998887 45554 444555677788889999999876544
No 54
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=20.96 E-value=68 Score=23.02 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=15.5
Q ss_pred hhcccchhHHHHHHHHHhhhh
Q 030898 143 KNLVFKPDREALIQKIKDTYK 163 (169)
Q Consensus 143 RyLL~~~~R~eL~~ki~~lk~ 163 (169)
|++|.+.+++++.+++++.+.
T Consensus 2 RH~LSkKe~k~~~~k~~~~yg 22 (65)
T PF09183_consen 2 RHFLSKKEIKEIKEKIKEKYG 22 (65)
T ss_dssp -EE--HHHHHHHHHHHHT-TT
T ss_pred cccccHHHHHHHHHHHHHHhC
Confidence 789999999999999999655
No 55
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=59 Score=30.29 Aligned_cols=46 Identities=20% Similarity=0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHh------------hcCCCchhhHhhhhhheeehhhhhhcccc
Q 030898 103 VTVAIAVWGSTGMISAI------------DRLPLVPGVLELVGIGYTGWFAYKNLVFK 148 (169)
Q Consensus 103 ~aaiVal~v~~~Vl~AI------------d~IPLlp~llELVGigyt~WFvyRyLL~~ 148 (169)
+|+|++..++.+++..| -++=++|.|||=||+.=+-|=.|-|=-.+
T Consensus 225 ~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~~~~ 282 (372)
T KOG2927|consen 225 AGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYHYKK 282 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhcccccccCCC
Confidence 45566666666666665 34558899999999987776555544333
No 56
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=20.81 E-value=2.4e+02 Score=20.90 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 030898 98 VTSLAVTVAIAVWGSTGMISAIDRLPLVPGV 128 (169)
Q Consensus 98 v~~li~aaiVal~v~~~Vl~AId~IPLlp~l 128 (169)
++|+++--.++-|+...+=+-+++||++..+
T Consensus 10 ~iG~l~~~~~g~~l~~~~e~ll~riP~v~~i 40 (108)
T PF04367_consen 10 LIGLLARNYFGKWLLNWLERLLQRIPLVKSI 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3444444556667777777778899986654
No 57
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.47 E-value=4.4e+02 Score=22.08 Aligned_cols=15 Identities=7% Similarity=0.481 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhh
Q 030898 80 EIVKTVQEAWDKVED 94 (169)
Q Consensus 80 E~v~~l~e~wd~~e~ 94 (169)
.+...|++.|+.+-.
T Consensus 217 ~~~~al~~~~~~~~~ 231 (262)
T PF14257_consen 217 RFRDALKNGWNALVS 231 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
Done!