Query 030898
Match_columns 169
No_of_seqs 138 out of 183
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tx3_A Uncharacterized protein 59.8 13 0.00044 30.8 5.1 75 52-143 103-179 (249)
2 2amj_A Modulator of drug activ 30.1 13 0.00044 28.8 0.4 43 125-167 162-204 (204)
3 2k1k_A Ephrin type-A receptor 30.0 64 0.0022 19.6 3.5 17 98-114 13-29 (38)
4 3rpe_A MDAB, modulator of drug 27.0 33 0.0011 27.6 2.3 42 126-167 176-217 (218)
5 3lcm_A SMU.1420, putative oxid 25.3 21 0.00072 27.2 0.9 45 123-167 144-190 (196)
6 2kfe_A Meucin-24; alpha-helix, 20.7 66 0.0022 18.6 2.1 18 79-96 4-21 (26)
7 2knc_B Integrin beta-3; transm 19.9 35 0.0012 23.7 1.0 29 134-162 24-52 (79)
8 1ors_C Potassium channel; volt 17.9 1.3E+02 0.0045 21.6 3.9 46 102-147 11-57 (132)
9 1r8j_A KAIA; circadian clock p 17.9 65 0.0022 27.9 2.4 32 134-166 169-207 (289)
10 3sc0_A Methylmalonic aciduria 17.0 39 0.0013 28.5 0.8 29 136-164 157-205 (241)
No 1
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=59.79 E-value=13 Score=30.76 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhc-CCCchhhH
Q 030898 52 TYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVT-VAIAVWGSTGMISAIDR-LPLVPGVL 129 (169)
Q Consensus 52 ~~~~~~~r~v~~~a~~~~~~e~~~~~lpE~v~~l~e~wd~~e~k~~v~~li~a-aiVal~v~~~Vl~AId~-IPLlp~ll 129 (169)
-+...++++|-...+|+.+.+....+ +++++ |+...+-...+++.+. +++.+ .++- ||.+..
T Consensus 103 pF~~~LAE~VE~~l~g~~~~~~~~~~---~~~~l---~r~l~~~l~~l~~~l~~~l~ll--------~L~f~IP~vg~-- 166 (249)
T 3tx3_A 103 PFNGLLAEKVERYESGESLGDEGFLG---LFKDI---PRTLKREMQKLMYYIPRALGFF--------LLSLVIPVIGQ-- 166 (249)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCSSGG---GSSSH---HHHHHHHHHHHHHHHHHHHHHH--------HHHHHSTTHHH--
T ss_pred HhhHHHHHHHHHHHcCCCCCccchhh---HHHHH---HHHHHHHHHHHHHHHHHHHHHH--------HHHhccchHHH--
Confidence 45678889998888888765432222 23322 4444444444443322 22222 2344 787765
Q ss_pred hhhhhheeehhhhh
Q 030898 130 ELVGIGYTGWFAYK 143 (169)
Q Consensus 130 ELVGigyt~WFvyR 143 (169)
++...+++|+.-+
T Consensus 167 -vl~~~~~~~~lg~ 179 (249)
T 3tx3_A 167 -VLWYIFVCWMMSI 179 (249)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 7777777876543
No 2
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=30.10 E-value=13 Score=28.85 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=36.0
Q ss_pred chhhHhhhhhheeehhhhhhcccchhHHHHHHHHHhhhhhhcC
Q 030898 125 VPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIG 167 (169)
Q Consensus 125 lp~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~~I~G 167 (169)
+-.+|+.+|+-+..+|....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999988888778999999998887666653
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.03 E-value=64 Score=19.59 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030898 98 VTSLAVTVAIAVWGSTG 114 (169)
Q Consensus 98 v~~li~aaiVal~v~~~ 114 (169)
..+++++.++++-++.+
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 44555555544444333
No 4
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=27.02 E-value=33 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=37.0
Q ss_pred hhhHhhhhhheeehhhhhhcccchhHHHHHHHHHhhhhhhcC
Q 030898 126 PGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIG 167 (169)
Q Consensus 126 p~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~~I~G 167 (169)
-.+|+.+|+-+.-+|+.-.....++|++.++++++.-++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999998888899999999999887777654
No 5
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=25.34 E-value=21 Score=27.25 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCchhhHhhhhhheeehhhhhhcc--cchhHHHHHHHHHhhhhhhcC
Q 030898 123 PLVPGVLELVGIGYTGWFAYKNLV--FKPDREALIQKIKDTYKDIIG 167 (169)
Q Consensus 123 PLlp~llELVGigyt~WFvyRyLL--~~~~R~eL~~ki~~lk~~I~G 167 (169)
+++-.+|..+|+-+..++....+- ..++|++.+++++++-++|+-
T Consensus 144 ~~l~~~l~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (196)
T 3lcm_A 144 VLKKQILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQITRNILE 190 (196)
T ss_dssp HHHHHTTGGGTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999998887765 457899999999999888864
No 6
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.71 E-value=66 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhhhhH
Q 030898 79 PEIVKTVQEAWDKVEDKY 96 (169)
Q Consensus 79 pE~v~~l~e~wd~~e~k~ 96 (169)
.|+++.+++++.+..|+.
T Consensus 4 kei~~kiK~kl~~akdK~ 21 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKM 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 378899999988888875
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.88 E-value=35 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.0
Q ss_pred hheeehhhhhhcccchhHHHHHHHHHhhh
Q 030898 134 IGYTGWFAYKNLVFKPDREALIQKIKDTY 162 (169)
Q Consensus 134 igyt~WFvyRyLL~~~~R~eL~~ki~~lk 162 (169)
+|...+++||.++.-.||+|...--++..
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788999999999998654444443
No 8
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=17.91 E-value=1.3e+02 Score=21.64 Aligned_cols=46 Identities=13% Similarity=-0.161 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-chhhHhhhhhheeehhhhhhccc
Q 030898 102 AVTVAIAVWGSTGMISAIDRLPL-VPGVLELVGIGYTGWFAYKNLVF 147 (169)
Q Consensus 102 i~aaiVal~v~~~Vl~AId~IPL-lp~llELVGigyt~WFvyRyLL~ 147 (169)
++.+++.+-+...++++.+.++- ....++.+-...++||+.-|+++
T Consensus 11 ~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 11 GVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666665542 45678888999999999877763
No 9
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=17.90 E-value=65 Score=27.88 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=24.9
Q ss_pred hheeehhh-------hhhcccchhHHHHHHHHHhhhhhhc
Q 030898 134 IGYTGWFA-------YKNLVFKPDREALIQKIKDTYKDII 166 (169)
Q Consensus 134 igyt~WFv-------yRyLL~~~~R~eL~~ki~~lk~~I~ 166 (169)
+||.|-|. |||| -..+|+||++.++.-+.+|+
T Consensus 169 LGYLGVYYKR~p~~F~rnl-~~~ErqeLl~~Lk~~YR~Il 207 (289)
T 1r8j_A 169 LGYLGVYYKRDPDRFLRNL-PAYESQKLHQAMQTSYREIV 207 (289)
T ss_dssp HEEEEEEECCCGGGSTTTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeeeeCHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Confidence 67888664 4454 45899999999999998875
No 10
>3sc0_A Methylmalonic aciduria and homocystinuria type C; mmachc, CBLC, cobalamin, flavin, glutathione, flavin reducta oxidoreductase, maturase; HET: COB; 1.95A {Homo sapiens} PDB: 3sbz_A 3sby_A
Probab=16.98 E-value=39 Score=28.50 Aligned_cols=29 Identities=34% Similarity=0.777 Sum_probs=21.9
Q ss_pred eeehhhhhhcc--------------------cchhHHHHHHHHHhhhhh
Q 030898 136 YTGWFAYKNLV--------------------FKPDREALIQKIKDTYKD 164 (169)
Q Consensus 136 yt~WFvyRyLL--------------------~~~~R~eL~~ki~~lk~~ 164 (169)
|.+||+.|=++ ..++|.||+++++.-|++
T Consensus 157 yGgWFA~RaVvvf~~v~~p~l~~~~P~~~l~s~e~~~~lLe~fN~~W~d 205 (241)
T 3sc0_A 157 FGGWFAIRGVVLLPGIEVPDLPPRKPHDCVPTRADRIALLEGFNFHWRD 205 (241)
T ss_dssp TBTSCEEEEEEEEEEEECTTCCCCCCCCCSCSHHHHHHHHHHHHHCGGG
T ss_pred cCcceEEEEEEEecCccCcccCCCCCcccCCCHHHHHHHHHHHhhhhcc
Confidence 56899988544 237899999999876664
Done!