Query 030898
Match_columns 169
No_of_seqs 138 out of 183
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ow5a_ a.60.1.2 (A:) Serine/t 26.0 13 0.00093 22.3 1.4 40 123-162 1-60 (60)
2 d2ebfx3 d.3.1.17 (X:1094-1285) 25.2 15 0.0011 27.4 1.8 22 144-165 38-59 (192)
3 d1rl6a2 d.141.1.1 (A:82-170) R 18.6 7.1 0.00052 26.3 -1.1 12 128-139 4-15 (89)
4 d3bvua1 a.8.3.1 (A:412-522) Go 16.9 21 0.0015 24.0 1.1 24 136-159 4-29 (111)
5 d2j01h2 d.141.1.1 (H:83-171) R 16.5 8.4 0.00061 26.0 -1.2 18 128-145 4-21 (89)
6 d1wr6a1 a.7.8.1 (A:211-300) AD 16.4 79 0.0058 20.3 4.0 44 51-94 42-85 (90)
7 d1ciya3 f.1.3.1 (A:33-255) del 15.3 82 0.006 23.1 4.3 47 108-163 7-53 (223)
8 d2zjre1 d.141.1.1 (E:83-172) R 15.1 12 0.00088 25.2 -0.6 18 128-145 4-21 (90)
9 d2qamg2 d.141.1.1 (G:82-176) R 14.6 11 0.00082 25.7 -0.9 19 128-146 4-22 (95)
10 d1xi3a_ c.1.3.1 (A:) Thiamin p 14.1 35 0.0026 24.5 1.7 48 120-167 152-206 (206)
No 1
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.04 E-value=13 Score=22.28 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCchhhHhhhhhh-eeehhhhhh-c-----------------c-cchhHHHHHHHHHhhh
Q 030898 123 PLVPGVLELVGIG-YTGWFAYKN-L-----------------V-FKPDREALIQKIKDTY 162 (169)
Q Consensus 123 PLlp~llELVGig-yt~WFvyRy-L-----------------L-~~~~R~eL~~ki~~lk 162 (169)
|.|...|+=+|+. |.--|.-.+ . + .-..|..++.+|+.+|
T Consensus 1 p~V~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril~~i~~Lk 60 (60)
T d1ow5a_ 1 PFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ 60 (60)
T ss_dssp CHHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 5566667777776 666665542 1 2 3367888888887764
No 2
>d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=25.16 E-value=15 Score=27.37 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=18.1
Q ss_pred hcccchhHHHHHHHHHhhhhhh
Q 030898 144 NLVFKPDREALIQKIKDTYKDI 165 (169)
Q Consensus 144 yLL~~~~R~eL~~ki~~lk~~I 165 (169)
|-+...-|+||.+||+.+|+++
T Consensus 38 nsvsedlreelmqkidaikndv 59 (192)
T d2ebfx3 38 NSVSEDLREELMQKIDAIKNDV 59 (192)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCH
T ss_pred hhhhHHHHHHHHHHHHHHhccc
Confidence 4455667999999999999886
No 3
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.59 E-value=7.1 Score=26.35 Aligned_cols=12 Identities=58% Similarity=1.004 Sum_probs=9.1
Q ss_pred hHhhhhhheeeh
Q 030898 128 VLELVGIGYTGW 139 (169)
Q Consensus 128 llELVGigyt~W 139 (169)
-|||+|+||=+-
T Consensus 4 ~L~lvGVGYra~ 15 (89)
T d1rl6a2 4 ALELVGVGYRAS 15 (89)
T ss_dssp EEEEESTTCEEE
T ss_pred EEEEEEEEEEEE
Confidence 478899998653
No 4
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=16.93 E-value=21 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=18.4
Q ss_pred eeehhhhhhcccchhHH--HHHHHHH
Q 030898 136 YTGWFAYKNLVFKPDRE--ALIQKIK 159 (169)
Q Consensus 136 yt~WFvyRyLL~~~~R~--eL~~ki~ 159 (169)
|||+|..|.-++.-+|+ .+++..+
T Consensus 4 WtG~yTSr~~lK~~~R~~e~~L~~~E 29 (111)
T d3bvua1 4 WSGYYTSRPYHKRMDRVLMHYVRAAE 29 (111)
T ss_dssp CCGGGTSSHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999995 3444444
No 5
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=16.50 E-value=8.4 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=13.1
Q ss_pred hHhhhhhheeehhhhhhc
Q 030898 128 VLELVGIGYTGWFAYKNL 145 (169)
Q Consensus 128 llELVGigyt~WFvyRyL 145 (169)
-|||+|+||=+.--=++|
T Consensus 4 ~LelvGVGYra~~~g~~L 21 (89)
T d2j01h2 4 ELLIKGIGYRARLVGRAL 21 (89)
T ss_dssp EECCCSSSCEECCBTTBE
T ss_pred EEEEEEEEEEEEEeCCEE
Confidence 479999999876554444
No 6
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.37 E-value=79 Score=20.31 Aligned_cols=44 Identities=7% Similarity=0.201 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHhhhh
Q 030898 51 TTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVED 94 (169)
Q Consensus 51 ~~~~~~~~r~v~~~a~~~~~~e~~~~~lpE~v~~l~e~wd~~e~ 94 (169)
..-|++.-++|+.++......|+.-.++=++-..++....+|+.
T Consensus 42 ~~~C~~~qp~i~~li~~~~~dee~l~elL~~ND~L~~vl~~y~~ 85 (90)
T d1wr6a1 42 FDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKT 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35688888888888753333344444554555556666666654
No 7
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=15.32 E-value=82 Score=23.15 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCCCchhhHhhhhhheeehhhhhhcccchhHHHHHHHHHhhhh
Q 030898 108 AVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYK 163 (169)
Q Consensus 108 al~v~~~Vl~AId~IPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~ 163 (169)
++-++..+++.. ||.++.++-++|++|-- ..++.=+++.+.++++-+
T Consensus 7 ~~~~~~~ll~~~--iP~~g~~~~li~~lwp~-------~~~~~W~~~~~~ve~LId 53 (223)
T d1ciya3 7 SLSLTQFLLSEF--VPGAGFVLGLVDIIWGI-------FGPSQWDAFLVQIEQLIN 53 (223)
T ss_dssp HHHHHHHHHHCC--SSSHHHHHHHHHHTTSC-------CSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhc--CCchHHHHHHHHHHcCC-------CCccHHHHHHHHHHHHHH
Confidence 333444455544 88888888888877632 122345666666666653
No 8
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=15.13 E-value=12 Score=25.17 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=12.1
Q ss_pred hHhhhhhheeehhhhhhc
Q 030898 128 VLELVGIGYTGWFAYKNL 145 (169)
Q Consensus 128 llELVGigyt~WFvyRyL 145 (169)
-|||+|+||=+-.-=++|
T Consensus 4 ~L~lvGVGYra~~~g~~L 21 (90)
T d2zjre1 4 NLELRGVGFRAKLTGKAL 21 (90)
T ss_dssp EEECBSTTCCCCCBTTBC
T ss_pred EEEEEEEEEEEEecCCEE
Confidence 478999999765444433
No 9
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=14.64 E-value=11 Score=25.65 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=13.1
Q ss_pred hHhhhhhheeehhhhhhcc
Q 030898 128 VLELVGIGYTGWFAYKNLV 146 (169)
Q Consensus 128 llELVGigyt~WFvyRyLL 146 (169)
-|||+|+||=+..-=++|.
T Consensus 4 ~L~lvGVGYRa~~~g~~L~ 22 (95)
T d2qamg2 4 KLQLVGVGYRAAVKGNVIN 22 (95)
T ss_dssp CCCBCSSSCCCCCCTTEEC
T ss_pred EEEEEeEEEEEEEcCCEEE
Confidence 4789999997765444443
No 10
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}
Probab=14.10 E-value=35 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=42.3
Q ss_pred hcCCCch-------hhHhhhhhheeehhhhhhcccchhHHHHHHHHHhhhhhhcC
Q 030898 120 DRLPLVP-------GVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIG 167 (169)
Q Consensus 120 d~IPLlp-------~llELVGigyt~WFvyRyLL~~~~R~eL~~ki~~lk~~I~G 167 (169)
-.+|++. .+-|+.-.|.-+.-+-+.++.++|=++-++++++..++++|
T Consensus 152 ~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~~~~~ 206 (206)
T d1xi3a_ 152 VKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEVLG 206 (206)
T ss_dssp CSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHHHhhC
Confidence 3678764 56788899999999999999999999999999999999987
Done!