BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030899
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 1   MLNSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPD-DMVVLAEPDPGDMVLAIRKAIS 59
           +L S  E+F + +LEA +CG+  + TRVGG+PEV+   D   L E   GD      +AI 
Sbjct: 289 LLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCE--VGDTTGVADQAIQ 346

Query: 60  LL 61
           LL
Sbjct: 347 LL 348


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 1   MLNSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPD-DMVVLAEPDPGDMVLAIRKAIS 59
           +L S  E+F + +LEA +CG+  + TRVGG+PEV+   D   L E   GD      +AI 
Sbjct: 309 LLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCE--VGDTTGVADQAIQ 366

Query: 60  LL 61
           LL
Sbjct: 367 LL 368


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP 62
           S  E F +  LEA   G + +++ VGG+ +++ ++  +L +  DPG++  AI KA+  L 
Sbjct: 339 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LS 397

Query: 63  KIDPQVMHERMKKL---YNWHDVAKRTEIVY----DRALE 95
           + D     E  KK    ++W   A+R    Y    DRA +
Sbjct: 398 RSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 437


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP 62
           S  E F +  LEA   G + +++ VGG+ +++ ++  +L +  DPG++  AI KA+  L 
Sbjct: 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LS 396

Query: 63  KIDPQVMHERMKKL---YNWHDVAKRTEIVY----DRALE 95
           + D     E  KK    ++W   A+R    Y    DRA +
Sbjct: 397 RSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 436


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP 62
           S  E F +  LEA   G + +++ VGG+ +++ ++  +L +  DPG++  AI KA+  L 
Sbjct: 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LS 396

Query: 63  KIDPQVMHERMKKL---YNWHDVAKRTEIVY 90
           + D     E  KK    ++W   A+R    Y
Sbjct: 397 RSDLSKFRENCKKRAMSFSWEKSAERYVKAY 427


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP 62
           S  E F +  LEA   G + +++ VGG+ +++ ++  +L +  DPG++  AI KA+  L 
Sbjct: 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LS 181

Query: 63  KIDPQVMHERMKK 75
           + D     E  KK
Sbjct: 182 RSDLSKFRENCKK 194


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLA-EPDPGDMVLAIRKAISLLP 62
           +L EAF + ++EA +CGL T +T  GG  E++         +P  GD             
Sbjct: 672 ALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKC 731

Query: 63  KIDPQVMHE-------RMKKLYNWHDVAKR 85
           K DP    E       R+++ Y W   ++R
Sbjct: 732 KEDPSHWDEISKGGLQRIEEKYTWQIYSQR 761


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 32.3 bits (72), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVPEVL 35
           +L EAF + ++EA +CGL T +T  GG  E++
Sbjct: 672 ALYEAFGLTVVEAXTCGLPTFATCKGGPAEII 703


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 30.0 bits (66), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVP 32
           S  E+F +  +EA + G   ++ RVGG+P
Sbjct: 313 SFNESFGLVAMEAQASGTPVIAARVGGLP 341


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 30.0 bits (66), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 4   SLTEAFCIAILEAASCGLLTVSTRVGGVP 32
           S  E+F +  +EA + G   ++ RVGG+P
Sbjct: 333 SFNESFGLVAMEAQASGTPVIAARVGGLP 361


>pdb|3S4L|A Chain A, The Crispr-Associated Cas3 Hd Domain Protein Mj0384 From
           Methanocaldococcus Jannaschii
          Length = 244

 Score = 26.2 bits (56), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 37  DDMVVLAEPDPGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 95
           +DMV   E      +  I++A+  L  K+D + + E MK L   HD+ K ++I Y RA+ 
Sbjct: 22  NDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKI-YQRAII 80

Query: 96  CPNQNLV 102
              + L+
Sbjct: 81  NDQEKLM 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,679
Number of Sequences: 62578
Number of extensions: 192702
Number of successful extensions: 444
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 12
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)