BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030901
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 13 RIVNVSSEGHRFTYREGIRFEKLNDQSG-YGNFVAYGQSKLANILHANELARHLKEEEGV 71
R+V VSS H + I E LN +S Y ++AY QSKLAN+L +EL R L G
Sbjct: 133 RVVTVSSMAH---WPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLT-AAGS 188
Query: 72 EITANSLHPGAINTNLFRQEG--FVNAIVGFLGKFVFRNVQQGAATTCYVALHPQVKGKT 129
+ A + HPG +TNL G +A++ + V + GA T Y A + G +
Sbjct: 189 PLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFGARQTLYAASQ-DLPGDS 247
Query: 130 --GLYFNDSNIAQP---SQHAVDTELARKLWDFS 158
G F QP S+ A D +A LW S
Sbjct: 248 FVGPRFGYLGRTQPVGRSRRAKDAGMAAALWALS 281
>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed
With Nadp+
Length = 274
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 34 KLNDQSGYGNFVAYGQSKLANILHANELARHLKEEEGVE-ITANSLHPGAINTNLFRQEG 92
+++++ G+ N YG SKL + + LAR L E+ + I N+ PG + T++
Sbjct: 179 EVHEREGWPN-SPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMD---- 233
Query: 93 FVNAIVGFLGKFVFRNVQQGAATTCYVALHP 123
GK R V++GA T Y+AL P
Sbjct: 234 ---------GKDSIRTVEEGAETPVYLALLP 255
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 40 GYGNFVAYGQSKLANILHANELARHLKEEEGVEITANSLHPGAINTNLFR 89
G GN Y SK I A +AR L + +TAN + PG I+T++ R
Sbjct: 146 GIGNQANYAASKAGVIGMARSIARELSK---ANVTANVVAPGYIDTDMTR 192
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 40 GYGNFVAYGQSKLANILHANELARHLKEEEGVEITANSLHPGAINTNLFR 89
G GN Y SK I A +AR L + +TAN + PG I+T++ R
Sbjct: 146 GIGNQANYAASKAGVIGMARSIARELSK---ANVTANVVAPGYIDTDMTR 192
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 40 GYGNFVAYGQSKLANILHANELARHLKEEEGVEITANSLHPGAINTNLFR 89
G GN Y SK I A +AR L + +TAN + PG I+T++ R
Sbjct: 166 GIGNQANYAASKAGVIGMARSIARELSK---ANVTANVVAPGYIDTDMTR 212
>pdb|4F5D|A Chain A, ErisSTING IN COMPLEX WITH LIGAND
pdb|4F5D|B Chain B, ErisSTING IN COMPLEX WITH LIGAND
pdb|4F5E|A Chain A, Crystal Structure Of ErisSTING
Length = 256
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 58 ANELARHLKEEEGVEITANSLHPGAI-NTNLFRQE 91
+ E+ RHL++EE E+T SL A+ +T+ QE
Sbjct: 203 SQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE 237
>pdb|4F5W|A Chain A, Crystal Structure Of Ligand Free Human Sting Ctd
pdb|4F5Y|A Chain A, Crystal Structure Of Human Sting Ctd Complex With C-Di-Gmp
pdb|4F5Y|B Chain B, Crystal Structure Of Human Sting Ctd Complex With C-Di-Gmp
Length = 239
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 58 ANELARHLKEEEGVEITANSLHPGAI-NTNLFRQE 91
+ E+ RHL++EE E+T SL A+ +T+ QE
Sbjct: 178 SQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE 212
>pdb|4EF4|A Chain A, Crystal Structure Of Sting Ctd Complex With C-Di-Gmp
pdb|4EF4|B Chain B, Crystal Structure Of Sting Ctd Complex With C-Di-Gmp
pdb|4EF5|A Chain A, Crystal Structure Of Sting Ctd
pdb|4F9E|A Chain A, Cyclic Di-Gmp Sensing Via The Innate Immune Signaling
Protein Sting
pdb|4F9G|A Chain A, Crystal Structure Of Sting Complex With Cyclic Di-Gmp.
pdb|4F9G|C Chain C, Crystal Structure Of Sting Complex With Cyclic Di-Gmp
Length = 265
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 58 ANELARHLKEEEGVEITANSLHPGAI-NTNLFRQE 91
+ E+ RHL++EE E+T SL A+ +T+ QE
Sbjct: 212 SQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE 246
>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
Length = 317
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 58 ANELARHLKEEEGVEITANSLHPGAINTNLFRQEGFVNAIVGFL 101
ANE+ RH I NS++PGA+NT + E + + L
Sbjct: 223 ANEVGRH-------NIRVNSVNPGAVNTEMALNEKLLKMFLPHL 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,789,889
Number of Sequences: 62578
Number of extensions: 183838
Number of successful extensions: 405
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 11
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)