BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030902
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138
D CAVCL E E GEE R+L C H FH C+D W+ TCPLCR V
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRT 135
C +CL E GE++R L C H+FH+ C+D W+ ++K CP+CR
Sbjct: 16 KCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKK-CPICRV 59
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138
E CAVCL +F+ +E+ + CKH FHR CL W++ +K CPLC P +
Sbjct: 16 ELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVL 63
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141
C VC+ +FE + +R L C H FH C+D W+ + +TCP+CR P
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKAN-RTCPICRADSGPSS 74
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD-HDQKTCPLCRTPFV 138
C VC ++ GE +R L C H+FH +C+ PW++ HD +CP+CR
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHD--SCPVCRKSLT 63
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 60 NAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACL 119
N P S I + ++ +D V + C +C E+ G+ L C H FH+ C+
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQE--MCCPICCSEYVKGDVATELP-CHHYFHKPCV 70
Query: 120 DPWMDHDQKTCPLCRTPFVP 139
W+ TCP+CR F P
Sbjct: 71 SIWLQ-KSGTCPVCRCMFPP 89
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.5 bits (75), Expect = 0.056, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLC 133
+NC +CL + + + C H+ HR C + + + CPLC
Sbjct: 6 QNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLC 49
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.060, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP 136
C +CL + + + C H+ HR C + + + CPLC P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCSGP 52
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
G + C +C E ++++ + C H+ +CL W + D + CP CR
Sbjct: 335 GSTFQLCKICA---ENDKDVK-IEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
G + C +C E ++++ + C H+ +CL W + + + CP CR
Sbjct: 329 GSTFQLCKICA---ENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
G + C +C E ++++ + C H+ +CL W + + + CP CR
Sbjct: 331 GSTFQLCKICA---ENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
G + C +C E ++++ + C H+ +CL W + + + CP CR
Sbjct: 331 GSTFQLCKICA---ENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
G + C +C E ++++ + C H+ +CL W + + + CP CR
Sbjct: 329 GSTFQLCKICA---ENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCR 134
C H+ +CL W + D + CP CR
Sbjct: 44 CGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCR 134
C H F + C+D W D + CP+CR
Sbjct: 32 CAHSFCQKCIDKWSDR-HRNCPICR 55
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCRTPFV 138
C H FH C+ W+ + + CPLC+ +V
Sbjct: 48 CNHSFHNCCMSLWVKQNNR-CPLCQQDWV 75
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 109 NCKHIFHRACL-----DPWMDHDQKTCPLCRTPFVPDEMQ 143
+C H F +ACL +D + +CP+CR + P+ ++
Sbjct: 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 109 NCKHIFHRACLDPWMDHDQKTCPLCRTPF 137
NC H F C++ WM + CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKR-KIECPICRKDI 97
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCR 134
C H+ +CL W + + + CP CR
Sbjct: 45 CGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCR 134
C H+ +CL W + + + CP CR
Sbjct: 42 CGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 109 NCKHIFHRACLDPWMDHDQKTCPLCRTPF 137
NC H F C++ WM + CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKR-KIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 109 NCKHIFHRACLDPWMDHDQKTCPLCRT 135
NC H F C++ WM + CP+CR
Sbjct: 81 NCAHSFCSYCINEWMKR-KIECPICRK 106
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP 136
E C +CL E C H F C+ W+ + TCPLC+ P
Sbjct: 6 ERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVP 49
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 109 NCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQE 144
+CKH+F R C+ + CP CR P P +++
Sbjct: 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 109 NCKHIFHRACLDPWMDHDQKT-----CPLCRTPF 137
+C H F RAC+ + ++ T CP+CR P+
Sbjct: 36 DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 112 HIFHRACLDPWM-DHDQKTCPLCRTPFV 138
H H+ACL W+ D + C LC+ F+
Sbjct: 42 HFVHQACLQQWIKSSDTRCCELCKYEFI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.144 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,845,161
Number of Sequences: 62578
Number of extensions: 253546
Number of successful extensions: 716
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 43
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)