BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030902
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 1 MGFPVGYTEVFLPKFFVHTLSFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPEN 60
MG P + E+ +P + + TL +GF R+++ L Y+GL FL+ + + PTR+ +
Sbjct: 1 MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNET-SRSDPTRLALS 59
Query: 61 APVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLD 120
SA L E++PV++F DL DP + C VCL +F ++IR L C H+FH CLD
Sbjct: 60 T--SATLANELIPVVRFSDLLT---DPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLD 114
Query: 121 PWM-DHDQKTCPLCRTPFVPDEMQEEFNQRLWAAS 154
W+ D ++ TCP+CR F+P+E F+ W S
Sbjct: 115 RWIVDCNKITCPICRNRFLPEEKSTPFD---WGTS 146
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 1 MGFPVGY-TEVFLPKFFVHTLSFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPE 59
MG P + TE+ +P + + L +GF R+I+ L Y+GL FL+ + ++P
Sbjct: 1 MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET---SAPDLTRH 57
Query: 60 NAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACL 119
SA L E++PV++F DL DP + C VCL +FE +++R L C H+FH CL
Sbjct: 58 ALSTSASLANELIPVVRFSDLPT---DPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCL 114
Query: 120 DPWM-DHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSE 162
D W+ D+++ CP+CR F+P +E++ Q W + D FS+
Sbjct: 115 DRWIVDYNKMKCPVCRHRFLP---KEKYTQSDWGSGS--DWFSD 153
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 73 PVIKFQDLEMVNGDPP-----ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQ 127
PV +DLE G P E C VCL FE +E R L+ C H FHR C+D W+ Q
Sbjct: 502 PVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQ 561
Query: 128 KTCPLCRT 135
+CPLCRT
Sbjct: 562 NSCPLCRT 569
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 72 LPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCP 131
LPV KF+ GD + CA+CL E+E G+++R L C H +H C+DPW+ +KTCP
Sbjct: 226 LPVHKFK-----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 132 LCRTPFVPDE 141
+C+ VP +
Sbjct: 280 VCKQKVVPSQ 289
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQ 143
+ +C VCL + + GEE+R L +C+H+FH+ CL+ W+ H CPLCR+P +P Q
Sbjct: 69 NAASDCIVCLSKLKTGEEVRKL-DCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQ 125
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 66 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125
RL +E L I D + GD + CA+CL E+E G+++R L C H +H C+DPW+
Sbjct: 207 RLTKEQLKQIPTHDYQ--KGDQYDVCAICLDEYEDGDKLRVL-PCAHAYHSRCVDPWLTQ 263
Query: 126 DQKTCPLCRTP 136
+KTCP+C+ P
Sbjct: 264 TRKTCPICKQP 274
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 66 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125
RL +E L I D + GD + CA+CL E+E G+++R L C H +H C+DPW+
Sbjct: 207 RLTKEQLKQIPTHDYQ--KGDEYDVCAICLDEYEDGDKLRIL-PCAHAYHSRCVDPWLTQ 263
Query: 126 DQKTCPLCRTP 136
+KTCP+C+ P
Sbjct: 264 TRKTCPICKQP 274
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 66 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125
RL +E L I D + GD + CA+CL E+E G+++R L C H +H C+DPW+
Sbjct: 207 RLTKEQLKQIPTHDYQ--KGDEYDVCAICLDEYEDGDKLRVL-PCAHAYHSRCVDPWLTQ 263
Query: 126 DQKTCPLCRTP 136
+KTCP+C+ P
Sbjct: 264 TRKTCPICKQP 274
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 50 PDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRN 109
P + T + + + +I+ LPV F D + DP E CAVCL EFE E R L N
Sbjct: 82 PSTAATSVVASRGLDPNVIKS-LPVFTFSD--ETHKDPIE-CAVCLSEFEESETGRVLPN 137
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCRT 135
C+H FH C+D W H TCPLCR+
Sbjct: 138 CQHTFHVDCIDMWF-HSHSTCPLCRS 162
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 8 TEVFLPKFFVHTLSFLGFIRNIII-CLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSAR 66
T L V FLGF I CL R +G+ D P+++ + N +
Sbjct: 62 TMAILMIVLVSVFFFLGFFSVYIRRCLERVMGM------DYGNPNDAGNWLATNRQQARG 115
Query: 67 L---IREILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122
L I E P ++ ++ + G C+VCL EFE E +R + C H+FH C+D W
Sbjct: 116 LDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAW 175
Query: 123 MDHDQKTCPLCRTPFVP 139
+ TCPLCR +P
Sbjct: 176 L-RSHTTCPLCRADLIP 191
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 65 ARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD 124
++ IRE+LP++ +++ VN C+VCL +++ E+++ + +C H FH C+D W+
Sbjct: 74 SKDIREMLPIVIYKESFTVND---TQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT 130
Query: 125 HDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDL-FSEYSSVPE 168
TCPLCR +P + +Q + S +++ E S+ P+
Sbjct: 131 -SHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPD 174
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 77 FQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP 136
F D + + D +C +CL + G+ R L+ CKH FH+AC+D W+ +CPLCR
Sbjct: 755 FDDASLSSAD---SCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAH 811
Query: 137 FVPDEMQEE 145
V + +EE
Sbjct: 812 GVTTQAEEE 820
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 45 TDVIWPD---NSPTRIPENAPVS------ARLIREILPVIKFQDLEMVNGDPPENCAVCL 95
T+V W T +P N +S ++ IRE+LPV+ +++ +V C+VCL
Sbjct: 59 TNVDWSSLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDS---QCSVCL 115
Query: 96 YEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASG 155
+++ E+++ + +C H FH C+D W+ TCPLCR +P + +Q S
Sbjct: 116 GDYQAEEKLQQMPSCGHTFHMECIDLWLT-SHTTCPLCRLSLIPKPSLDLSHQSTEIVSS 174
Query: 156 VDD 158
+++
Sbjct: 175 IEN 177
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 84 NGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQ 143
+GD CA+C+ EF GEEIR L C H FH AC+D W+ + +CP CR VP +
Sbjct: 106 DGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLT-SRSSCPSCRRILVPVKCD 164
Query: 144 EEFNQRLWAASGVDD 158
+ A + V D
Sbjct: 165 RCGHHASTAETQVKD 179
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141
+C VCL + + GEE+R L C+H+FH+ CL+ W+ TCPLCR+ V D+
Sbjct: 84 SDCVVCLSKLKEGEEVRKLE-CRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 66 RLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125
R + E LPV +F L + D E CAVCL FE E +R L CKH FH C+D W+D
Sbjct: 123 RSVIESLPVFRFGALSG-HKDGLE-CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLD- 179
Query: 126 DQKTCPLCRTPFVPDEM 142
TCPLCR P+++
Sbjct: 180 AHSTCPLCRYRVDPEDI 196
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 72 LPVIKFQDLEMVNGDPPEN-----CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD 126
+PV KF+ ++V G+ ++ C+VCL EF+ E++R + NC H+FH C+D W+
Sbjct: 110 IPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWL-QG 168
Query: 127 QKTCPLCRT 135
CPLCRT
Sbjct: 169 NANCPLCRT 177
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 21 SFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSARLIREILPVIKFQDL 80
+ L R+++ + LG DF E D R+P P +++ + E LP +
Sbjct: 23 ALLELARSLLSGMDIDLGAVDFTEWD--------QRLP---PPASKKVVESLPKVTVTPE 71
Query: 81 EMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140
+ D C VCL EFE GE +R L C+H+FH AC+ PW+ +CPLCR D
Sbjct: 72 Q---ADAALKCPVCLLEFEEGETVRQL-PCEHLFHSACILPWLG-KTNSCPLCRHELPTD 126
Query: 141 EMQ-EEFNQ 148
EEF Q
Sbjct: 127 SPDYEEFKQ 135
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 70 EILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQK 128
E P + +++ V G CAVCL EFE E +R + C H+FH C+D W+ +
Sbjct: 113 ETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLS-EHS 171
Query: 129 TCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSEYSSVPE 168
TCPLCR V ++ Q + + + SG D S+ PE
Sbjct: 172 TCPLCRADLVLNQ-QGDDDDSTESYSGTDPGTISSSTDPE 210
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 70 EILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQK 128
E P + ++ + G C VCL EFE E +R + C H+FH C+D W+ Q
Sbjct: 96 ETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWL-RSQT 154
Query: 129 TCPLCRTPFVP 139
TCPLCR VP
Sbjct: 155 TCPLCRANLVP 165
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 65 ARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD 124
++ +RE+LP++ F++ V C+VCL +++ ++++ + CKH FH C+D W+
Sbjct: 77 SKELREMLPIVVFKESFTVMDS---QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLT 133
Query: 125 HDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSEYSSVPE 168
TCPLCR +P ++ + + + D+ E SS PE
Sbjct: 134 -SHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDE---EVSSQPE 173
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 72 LPVIKFQDL-----EMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD 126
LP+ KF + M +GD CAVCL +FE +++R L C H FH C+D W+ +
Sbjct: 97 LPIFKFSSVTRRSSSMNSGD----CAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSN 152
Query: 127 QKTCPLCRTPFVPDE 141
Q TCPLCR+P E
Sbjct: 153 Q-TCPLCRSPLFASE 166
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 68 IREILPVIKFQDLE--MVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125
+ E P + D++ M P CAVCL EF +E+R L C H+FH C+DPW+
Sbjct: 108 VVEAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLA- 166
Query: 126 DQKTCPLCRT 135
TCPLCR
Sbjct: 167 AAVTCPLCRA 176
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 40 SDFLETDVIWPDNSPTRIPENAPVSAR---------LIREI--LPVIKFQDLEMVNGDPP 88
S+ +D+I NSP R ++ P + LI++I + K Q+ +NG
Sbjct: 96 SESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKING--- 152
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP-FVPDEMQEE-- 145
+C++CL EF E +R L C H FH C+D W+ CPLCR VP Q E
Sbjct: 153 TDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWL-KSHSNCPLCRAKIIVPTTQQPEHH 211
Query: 146 --------FNQRLWAASG---VDDLFSEYS 164
F + +A G VDD E S
Sbjct: 212 VVVMNLDRFTSNVGSAEGNVVVDDHREEVS 241
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 26 IRNIIICLFRYLGLSDFLETDVIWPDN---SPTRIPENAPVSARLIREILPVIKFQDLEM 82
I +I L Y + FL + D+ P + P + L+ DLE+
Sbjct: 48 ISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYS-------SDLEL 100
Query: 83 VNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRT 135
+ CA+CL EFE GE I+ L C+H FH C+ W+ + +CP CRT
Sbjct: 101 AGAE--AECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLS-TRSSCPTCRT 150
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
ENCAVC+ F+ + IR L CKHIFHR C+DPW+ D +TCP+C+
Sbjct: 263 ENCAVCIENFKVKDVIRIL-PCKHIFHRICIDPWL-LDHRTCPMCK 306
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141
P E C+VCL EFE +E R L C H+FH C+D W + +CPLCR P P +
Sbjct: 108 SPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF-RSRSSCPLCRAPVQPAQ 162
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 29 IIICLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPP 88
II C FR S F+ ++ I ++P N ++ + +R + PV+ + EM
Sbjct: 79 IIRCAFRRT--SSFMISEPIAGLSTPCG-SSNKGINKKALR-MFPVVSYSP-EMNLPGLG 133
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138
E C +CL +F GE+IR L C H FH C+D W+ TCP CR V
Sbjct: 134 EECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQ-QHLTCPKCRHCLV 182
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 70 EILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKT 129
E LP+ +F L+ +C+VCL +FE E +R L C+H FH C+D W++ T
Sbjct: 104 ESLPLFRFSALK--GSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQ-HAT 160
Query: 130 CPLCR 134
CPLCR
Sbjct: 161 CPLCR 165
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 21 SFLGFIRNIIICLFRYLGLSDFLETDVIWPDNSPTRIPENAPVSARLIREILPVIKFQDL 80
+ L R+++ + LG DF E D R+P P +A+ + E LP +
Sbjct: 23 ALLELARSLLSGMDIDLGALDFTEWD--------QRLP---PPAAKKVVESLPKVTVTPE 71
Query: 81 EMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
+ D C VCL EFE GE +R L C+H+FH +C+ PW+ +CPLCR
Sbjct: 72 Q---ADAALKCPVCLLEFEEGETVRQL-PCEHLFHSSCILPWLG-KTNSCPLCR 120
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
CAVCL E E GEE R+L C H FH C+D W+ TCPLCR
Sbjct: 134 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCR 176
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLC 133
CA+CL EF G+E+R + +C H FHR C+DPW+ H +TCPLC
Sbjct: 272 CAICLEEFSEGQELRVI-SCLHEFHRNCVDPWL-HQHRTCPLC 312
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCR 134
ENCAVC+ F+ + IR L CKHIFHR C+DPW+ D +TCP+C+
Sbjct: 267 ENCAVCIENFKVKDIIRIL-PCKHIFHRICIDPWL-LDHRTCPMCK 310
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 50 PDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRN 109
P S TR N + + +R + PV+ + EM E C +CL +F GE++R L
Sbjct: 96 PSLSSTRGSSNKGIKKKALR-MFPVVSYSP-EMNLPGLDEECVICLSDFVSGEQLRLLPK 153
Query: 110 CKHIFHRACLDPWMDHDQKTCPLCRTPFV 138
C H FH C+D W+ TCP CR V
Sbjct: 154 CNHGFHVRCIDKWL-QQHLTCPKCRNCLV 181
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139
CAVCL E + R L NCKH+FH +C+D W+ Q TCP+CRT P
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWL-TTQSTCPVCRTEAEP 147
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139
C+VCL EF+ E R + NCKH FH C+D W H +CPLCR+ P
Sbjct: 76 CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWF-HSHSSCPLCRSQIEP 123
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLC 133
CA+CL EF G+E+R + +C H FHR C+DPW+ + +TCPLC
Sbjct: 272 CAICLEEFSEGQELRVI-SCLHEFHRTCVDPWL-YQHRTCPLC 312
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 70 EILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQK 128
E P+ + +++ + G CA+CL EF E +RW+ C H FH C+D W+ Q
Sbjct: 101 ESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLS-SQS 159
Query: 129 TCPLCRT 135
TCP CR
Sbjct: 160 TCPACRA 166
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 91 CAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQEEFNQRL 150
CA+CL +++G +R L +C H+FH C+D W+ + TCP+CRT +P + + +
Sbjct: 147 CAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLN-PTCPVCRTSPLPTPLSTPLAEVV 205
Query: 151 WAASGV 156
AS V
Sbjct: 206 PLASSV 211
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 15 FFVHTLSFLGFIRNIIICLFRYL---------GLSDFLETDVIWPDNSPTRIP-ENAPVS 64
++ LS + F+ +I L ++L E+ TR +A +
Sbjct: 38 LYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFNLHDAEID 97
Query: 65 ARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD 124
I + LP++ ++ + + D + CAVCL EF +E+R L C H FH C+D W+
Sbjct: 98 QSFI-DALPLLHYKTMIGLRHDLSD-CAVCLREFTAEDELRLLPKCSHAFHVECIDTWL- 154
Query: 125 HDQKTCPLCR 134
TCPLCR
Sbjct: 155 LTNSTCPLCR 164
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 72 LPVIKFQDLE-MVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTC 130
+ V+ F+ E +++G C+VCL EFE E +R L C H FH C+D W+ K C
Sbjct: 118 ITVVGFKKGEGIIDGTE---CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL-LSHKNC 173
Query: 131 PLCRTPFV----PDEMQEEFNQRLWAASGVD 157
PLCR P + P + E N + + S D
Sbjct: 174 PLCRAPVLLITEPPHQETETNHQPDSESSND 204
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 46 DVIWPDNSPTRIPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIR 105
D+I PD P AP +++ + E LPVI F + + C +C G++++
Sbjct: 185 DMIIPDILDDGGPPRAPPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQ 244
Query: 106 WLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEMQEE 145
L CKH FH CL PW+D + +CP+CR D+ + E
Sbjct: 245 ELP-CKHTFHPPCLKPWLD-EHNSCPICRHELPTDDQKYE 282
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 70 EILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKT 129
+ LPV ++ E+ P +CAVCL EF +++R L NC H FH C+D W+ + T
Sbjct: 125 DALPVFLYK--EIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-T 181
Query: 130 CPLCRTPFVPDEMQEEF 146
CPLCR Q E+
Sbjct: 182 CPLCRGTLFSLGHQFEY 198
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 70 EILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQK 128
E P + D++ G CA+CL EFE E +R L C H+FH C+D W++
Sbjct: 106 ETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEA-HV 164
Query: 129 TCPLCRT 135
TCP+CR
Sbjct: 165 TCPVCRA 171
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 70 EILPVIKFQDLEMVN-GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQK 128
E P + +++ G+ CA+CL EFE E +RW+ C H FH C+D W+ +
Sbjct: 98 ESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLS-SRS 156
Query: 129 TCPLCRT 135
TCP+CR
Sbjct: 157 TCPVCRA 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.144 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,703,538
Number of Sequences: 539616
Number of extensions: 3130598
Number of successful extensions: 8286
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 7838
Number of HSP's gapped (non-prelim): 567
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)