Query 030902
Match_columns 169
No_of_seqs 153 out of 1621
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 8.4E-17 2.9E-21 109.0 7.8 79 57-139 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 4E-16 1.4E-20 101.7 4.4 66 71-140 8-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.6E-15 5.4E-20 92.9 3.5 51 87-138 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 6.3E-15 2.2E-19 94.4 5.6 53 85-139 11-63 (69)
5 2ep4_A Ring finger protein 24; 99.5 7.8E-15 2.7E-19 95.2 4.8 52 86-139 13-64 (74)
6 2ect_A Ring finger protein 126 99.5 9.8E-15 3.3E-19 95.6 4.3 54 86-141 13-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 8.5E-15 2.9E-19 97.1 4.1 53 87-140 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 2.6E-14 8.9E-19 87.3 4.3 50 87-138 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.4 1.3E-13 4.5E-18 96.5 5.1 53 87-140 24-95 (114)
10 3ng2_A RNF4, snurf, ring finge 99.4 8.6E-14 3E-18 89.3 3.7 55 86-142 8-66 (71)
11 2ea6_A Ring finger protein 4; 99.4 2.1E-13 7.1E-18 86.8 4.3 52 86-139 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.4 2E-13 7E-18 95.0 4.4 51 86-138 35-100 (106)
13 2xeu_A Ring finger protein 4; 99.4 1.5E-13 5.3E-18 86.2 3.2 53 87-141 2-58 (64)
14 2ecy_A TNF receptor-associated 99.3 1.1E-12 3.6E-17 83.2 4.8 52 86-141 13-64 (66)
15 2d8s_A Cellular modulator of i 99.3 7.5E-13 2.6E-17 87.6 4.2 54 85-140 12-71 (80)
16 1g25_A CDK-activating kinase a 99.3 7.7E-13 2.6E-17 83.6 4.1 55 88-142 3-58 (65)
17 2d8t_A Dactylidin, ring finger 99.3 3.4E-13 1.2E-17 86.8 2.2 51 86-141 13-63 (71)
18 4a0k_B E3 ubiquitin-protein li 99.3 2.7E-13 9.1E-18 95.9 0.5 52 86-138 46-111 (117)
19 2ct2_A Tripartite motif protei 99.3 3E-12 1E-16 85.2 5.0 55 86-141 13-70 (88)
20 2djb_A Polycomb group ring fin 99.3 2.4E-12 8.3E-17 83.0 4.3 52 86-141 13-64 (72)
21 1chc_A Equine herpes virus-1 r 99.3 1.6E-12 5.4E-17 82.7 3.3 49 87-139 4-52 (68)
22 2ysl_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 82.1 4.0 52 86-141 18-71 (73)
23 2ecn_A Ring finger protein 141 99.3 7.6E-13 2.6E-17 84.8 0.7 49 86-140 13-61 (70)
24 2csy_A Zinc finger protein 183 99.2 4.8E-12 1.6E-16 83.4 4.3 48 86-138 13-60 (81)
25 2yur_A Retinoblastoma-binding 99.2 5E-12 1.7E-16 82.0 4.2 51 86-140 13-65 (74)
26 1t1h_A Gspef-atpub14, armadill 99.2 4.1E-12 1.4E-16 83.0 3.3 52 86-141 6-57 (78)
27 3lrq_A E3 ubiquitin-protein li 99.2 2.8E-12 9.7E-17 88.0 2.5 52 87-141 21-72 (100)
28 4ayc_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 91.3 3.0 47 88-139 53-99 (138)
29 2egp_A Tripartite motif-contai 99.2 7.8E-12 2.7E-16 81.6 2.5 53 86-142 10-68 (79)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 1.4E-11 4.7E-16 87.6 3.6 53 87-141 6-62 (133)
31 2ysj_A Tripartite motif-contai 99.2 2.7E-11 9.3E-16 75.9 4.3 44 86-133 18-63 (63)
32 2ecw_A Tripartite motif-contai 99.1 2.8E-11 9.5E-16 79.7 4.3 51 87-141 18-73 (85)
33 2ct0_A Non-SMC element 1 homol 99.1 3.4E-11 1.2E-15 78.3 4.4 51 86-139 13-64 (74)
34 3fl2_A E3 ubiquitin-protein li 99.1 2E-11 6.8E-16 86.6 3.4 48 88-139 52-99 (124)
35 2ecj_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 73.8 4.1 44 86-133 13-58 (58)
36 3ztg_A E3 ubiquitin-protein li 99.1 8E-11 2.7E-15 79.1 6.0 48 86-137 11-60 (92)
37 2ecv_A Tripartite motif-contai 99.1 5.1E-11 1.8E-15 78.4 4.7 51 87-141 18-73 (85)
38 2y43_A E3 ubiquitin-protein li 99.1 2.2E-11 7.7E-16 83.0 2.4 48 88-139 22-69 (99)
39 4ap4_A E3 ubiquitin ligase RNF 99.1 2.8E-11 9.6E-16 86.0 2.4 55 86-142 70-128 (133)
40 1rmd_A RAG1; V(D)J recombinati 99.1 3.2E-11 1.1E-15 84.6 1.8 50 88-141 23-72 (116)
41 3hct_A TNF receptor-associated 99.1 7E-11 2.4E-15 83.2 3.6 52 86-141 16-67 (118)
42 1e4u_A Transcriptional repress 99.1 1.1E-10 3.7E-15 76.7 3.9 56 86-142 9-65 (78)
43 1jm7_A BRCA1, breast cancer ty 99.1 7.2E-11 2.5E-15 81.9 3.2 49 88-140 21-71 (112)
44 2ckl_A Polycomb group ring fin 99.1 8.8E-11 3E-15 81.3 3.6 50 87-140 14-63 (108)
45 1z6u_A NP95-like ring finger p 99.0 8.3E-11 2.8E-15 86.4 3.5 49 88-140 78-126 (150)
46 2ckl_B Ubiquitin ligase protei 99.0 9.4E-11 3.2E-15 87.1 3.8 50 87-139 53-102 (165)
47 3l11_A E3 ubiquitin-protein li 99.0 2.7E-11 9.3E-16 84.8 0.1 48 87-138 14-61 (115)
48 2kr4_A Ubiquitin conjugation f 98.9 4.1E-10 1.4E-14 75.0 2.6 52 86-142 12-63 (85)
49 3knv_A TNF receptor-associated 98.9 2.2E-10 7.4E-15 83.4 1.1 49 86-138 29-77 (141)
50 2y1n_A E3 ubiquitin-protein li 98.9 7.2E-10 2.5E-14 92.6 4.1 50 87-140 331-380 (389)
51 1bor_A Transcription factor PM 98.9 4.4E-10 1.5E-14 69.0 1.8 46 86-139 4-49 (56)
52 2kre_A Ubiquitin conjugation f 98.9 5E-10 1.7E-14 76.9 1.8 52 86-142 27-78 (100)
53 1wgm_A Ubiquitin conjugation f 98.9 9.4E-10 3.2E-14 75.2 2.7 52 86-142 20-72 (98)
54 2vje_A E3 ubiquitin-protein li 98.9 1.3E-09 4.3E-14 68.8 3.0 50 86-138 6-56 (64)
55 2vje_B MDM4 protein; proto-onc 98.8 2.4E-09 8.1E-14 67.3 3.0 50 86-138 5-55 (63)
56 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.5E-14 79.9 3.4 51 86-140 16-66 (170)
57 1wim_A KIAA0161 protein; ring 98.8 3.2E-09 1.1E-13 71.6 3.3 56 87-143 4-70 (94)
58 2c2l_A CHIP, carboxy terminus 98.8 2.5E-09 8.6E-14 84.7 3.2 53 86-142 206-258 (281)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 9.2E-10 3.1E-14 90.3 0.4 54 85-138 305-372 (381)
60 1jm7_B BARD1, BRCA1-associated 98.7 1.5E-09 5.2E-14 76.2 0.9 46 88-139 22-67 (117)
61 4ic3_A E3 ubiquitin-protein li 98.7 2.1E-09 7.1E-14 69.6 1.1 43 88-139 24-67 (74)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.2E-08 4.2E-13 63.5 4.5 49 86-138 4-58 (60)
63 2yu4_A E3 SUMO-protein ligase 98.7 8.7E-09 3E-13 69.7 3.1 50 86-139 5-63 (94)
64 2f42_A STIP1 homology and U-bo 98.6 8.4E-09 2.9E-13 77.8 2.1 53 86-142 104-156 (179)
65 2ecg_A Baculoviral IAP repeat- 98.5 2.3E-08 7.9E-13 64.7 1.9 43 88-139 25-68 (75)
66 2ea5_A Cell growth regulator w 98.5 9.5E-08 3.2E-12 60.8 3.3 45 86-139 13-58 (68)
67 2yho_A E3 ubiquitin-protein li 98.4 5.9E-08 2E-12 63.6 0.4 43 88-139 18-61 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 2E-07 6.7E-12 74.0 1.9 54 86-142 179-235 (267)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.5E-07 8.6E-12 76.3 0.9 43 88-139 295-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.2 5.2E-07 1.8E-11 56.2 1.5 50 89-142 4-53 (61)
71 3vk6_A E3 ubiquitin-protein li 98.0 4.4E-06 1.5E-10 56.7 4.2 47 90-139 3-49 (101)
72 3nw0_A Non-structural maintena 97.8 1.2E-05 3.9E-10 63.1 3.5 50 87-139 179-229 (238)
73 2lri_C Autoimmune regulator; Z 94.9 0.019 6.4E-07 35.9 2.9 48 86-137 10-60 (66)
74 2ko5_A Ring finger protein Z; 94.9 0.0083 2.8E-07 40.0 1.2 49 86-141 26-75 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 94.4 0.018 6.3E-07 38.3 2.0 33 88-121 3-35 (101)
76 1we9_A PHD finger family prote 93.9 0.01 3.5E-07 36.6 -0.0 51 86-136 4-58 (64)
77 2l5u_A Chromodomain-helicase-D 92.1 0.07 2.4E-06 32.5 1.9 47 85-135 8-57 (61)
78 2vpb_A Hpygo1, pygopus homolog 91.2 0.14 4.8E-06 31.7 2.6 36 85-120 5-41 (65)
79 3lqh_A Histone-lysine N-methyl 91.1 0.14 4.7E-06 38.3 2.9 51 89-139 3-66 (183)
80 1wep_A PHF8; structural genomi 90.4 0.2 6.8E-06 32.0 2.9 51 86-137 10-64 (79)
81 3u5n_A E3 ubiquitin-protein li 89.7 0.094 3.2E-06 39.7 1.0 49 85-137 4-55 (207)
82 2lv9_A Histone-lysine N-methyl 89.2 0.28 9.7E-06 32.7 3.0 48 88-137 28-77 (98)
83 1mm2_A MI2-beta; PHD, zinc fin 88.7 0.1 3.5E-06 31.8 0.5 49 85-137 6-57 (61)
84 2k16_A Transcription initiatio 88.4 0.17 5.8E-06 31.9 1.4 52 85-137 15-69 (75)
85 1weo_A Cellulose synthase, cat 88.2 0.83 2.9E-05 30.0 4.6 52 87-138 15-69 (93)
86 2kgg_A Histone demethylase jar 88.2 0.15 5.1E-06 29.9 0.9 45 90-134 4-52 (52)
87 3o36_A Transcription intermedi 88.0 0.12 4E-06 38.4 0.4 47 87-137 3-52 (184)
88 1wil_A KIAA1045 protein; ring 87.9 0.25 8.7E-06 32.2 1.9 35 86-122 13-47 (89)
89 1f62_A Transcription factor WS 87.7 0.22 7.4E-06 28.9 1.4 45 90-135 2-49 (51)
90 2ri7_A Nucleosome-remodeling f 87.4 0.13 4.6E-06 37.5 0.5 49 86-135 6-58 (174)
91 2cs3_A Protein C14ORF4, MY039 86.0 1.7 5.7E-05 28.1 4.9 40 86-125 13-52 (93)
92 2lbm_A Transcriptional regulat 85.8 0.94 3.2E-05 32.3 4.2 48 85-136 60-117 (142)
93 3v43_A Histone acetyltransfera 85.6 0.93 3.2E-05 30.7 4.0 34 87-120 4-42 (112)
94 2ysm_A Myeloid/lymphoid or mix 85.1 0.22 7.7E-06 33.7 0.6 39 85-124 4-42 (111)
95 2yql_A PHD finger protein 21A; 84.4 0.086 2.9E-06 31.5 -1.6 47 85-135 6-55 (56)
96 1wem_A Death associated transc 84.4 0.25 8.7E-06 31.2 0.6 47 88-136 16-70 (76)
97 1fp0_A KAP-1 corepressor; PHD 84.4 0.38 1.3E-05 31.6 1.4 49 84-136 21-72 (88)
98 2xb1_A Pygopus homolog 2, B-ce 83.9 0.55 1.9E-05 31.7 2.2 50 88-137 3-62 (105)
99 3ql9_A Transcriptional regulat 83.5 1.5 5.3E-05 30.7 4.4 47 85-135 54-110 (129)
100 3v43_A Histone acetyltransfera 82.3 0.35 1.2E-05 33.0 0.6 46 90-135 63-111 (112)
101 2yt5_A Metal-response element- 81.7 0.73 2.5E-05 28.0 1.9 51 86-136 4-61 (66)
102 1wen_A Inhibitor of growth fam 80.9 1.1 3.9E-05 27.9 2.6 46 87-137 15-66 (71)
103 1xwh_A Autoimmune regulator; P 80.3 0.22 7.4E-06 30.7 -0.9 46 86-135 6-54 (66)
104 2kwj_A Zinc finger protein DPF 80.2 0.53 1.8E-05 32.1 0.9 34 89-122 2-41 (114)
105 1weu_A Inhibitor of growth fam 79.0 1 3.5E-05 29.7 2.0 46 87-137 35-86 (91)
106 2puy_A PHD finger protein 21A; 78.4 0.28 9.6E-06 29.5 -0.8 45 87-135 4-51 (60)
107 2ro1_A Transcription intermedi 77.9 0.46 1.6E-05 35.4 0.1 45 88-136 2-49 (189)
108 1z2q_A LM5-1; membrane protein 76.1 1.8 6.3E-05 27.7 2.6 37 86-122 19-55 (84)
109 2ku3_A Bromodomain-containing 75.8 2.5 8.7E-05 26.3 3.1 50 85-134 13-64 (71)
110 2yw8_A RUN and FYVE domain-con 75.1 2 6.7E-05 27.5 2.5 37 86-122 17-53 (82)
111 2e6r_A Jumonji/ARID domain-con 75.0 0.36 1.2E-05 31.8 -1.1 49 86-135 14-65 (92)
112 1vfy_A Phosphatidylinositol-3- 73.8 2.2 7.4E-05 26.6 2.5 33 89-121 12-44 (73)
113 1joc_A EEA1, early endosomal a 73.6 1.8 6.2E-05 30.0 2.2 35 87-121 68-102 (125)
114 3t7l_A Zinc finger FYVE domain 73.2 2 7E-05 27.9 2.3 36 88-123 20-55 (90)
115 3c6w_A P28ING5, inhibitor of g 72.8 0.73 2.5E-05 27.7 0.0 44 87-135 8-57 (59)
116 2l43_A N-teminal domain from h 72.5 3.2 0.00011 26.9 3.1 56 86-141 23-80 (88)
117 1x4u_A Zinc finger, FYVE domai 71.6 2.4 8.1E-05 27.1 2.3 36 86-121 12-47 (84)
118 2d8v_A Zinc finger FYVE domain 71.4 2.2 7.5E-05 26.3 2.0 33 85-122 5-38 (67)
119 1z60_A TFIIH basal transcripti 71.2 3.3 0.00011 25.0 2.7 43 89-133 16-58 (59)
120 1y02_A CARP2, FYVE-ring finger 70.5 0.5 1.7E-05 32.8 -1.3 48 87-135 18-65 (120)
121 2e6s_A E3 ubiquitin-protein li 70.2 0.84 2.9E-05 29.0 -0.2 45 90-135 28-76 (77)
122 2vnf_A ING 4, P29ING4, inhibit 69.8 0.87 3E-05 27.4 -0.1 44 87-135 9-58 (60)
123 3ask_A E3 ubiquitin-protein li 69.2 0.88 3E-05 35.0 -0.3 45 90-135 176-224 (226)
124 3asl_A E3 ubiquitin-protein li 69.1 1.1 3.7E-05 27.9 0.2 45 90-135 20-68 (70)
125 4gne_A Histone-lysine N-methyl 68.0 4.5 0.00015 27.3 3.2 47 86-138 13-64 (107)
126 1wee_A PHD finger family prote 67.4 2.5 8.6E-05 26.2 1.7 49 86-135 14-65 (72)
127 2g6q_A Inhibitor of growth pro 67.4 1.1 3.9E-05 27.1 0.0 44 87-135 10-59 (62)
128 3shb_A E3 ubiquitin-protein li 67.3 0.89 3E-05 29.0 -0.5 45 90-135 28-76 (77)
129 3zyq_A Hepatocyte growth facto 67.2 2.6 8.9E-05 32.1 2.1 35 88-122 164-198 (226)
130 1dvp_A HRS, hepatocyte growth 67.2 2.4 8.4E-05 32.0 1.9 34 88-121 161-194 (220)
131 1zfo_A LAsp-1; LIM domain, zin 67.1 2.6 8.9E-05 21.7 1.4 27 89-118 4-30 (31)
132 1wfk_A Zinc finger, FYVE domai 67.0 3.6 0.00012 26.7 2.4 36 87-122 8-43 (88)
133 1wew_A DNA-binding family prot 66.1 1.4 4.8E-05 27.9 0.3 48 87-136 15-72 (78)
134 3mpx_A FYVE, rhogef and PH dom 65.5 1.3 4.4E-05 36.6 0.0 51 86-136 373-429 (434)
135 3m62_A Ubiquitin conjugation f 65.3 2.8 9.5E-05 38.7 2.1 51 86-141 889-940 (968)
136 3o7a_A PHD finger protein 13 v 60.0 1.2 3.9E-05 25.9 -0.9 42 93-135 8-51 (52)
137 3o70_A PHD finger protein 13; 58.7 4.4 0.00015 24.9 1.6 48 86-135 17-66 (68)
138 3a1b_A DNA (cytosine-5)-methyl 57.6 8.9 0.0003 27.8 3.3 47 85-135 76-133 (159)
139 4fo9_A E3 SUMO-protein ligase 56.7 7.6 0.00026 31.8 3.1 49 90-141 217-268 (360)
140 2jvx_A NF-kappa-B essential mo 56.6 3.4 0.00012 21.1 0.6 15 127-141 3-17 (28)
141 3i2d_A E3 SUMO-protein ligase 56.1 7.6 0.00026 32.0 3.0 50 90-142 251-303 (371)
142 2k2d_A Ring finger and CHY zin 55.7 2.5 8.6E-05 27.0 0.1 34 130-163 1-34 (79)
143 1zbd_B Rabphilin-3A; G protein 54.0 6.9 0.00024 27.4 2.2 69 86-159 53-125 (134)
144 1wd2_A Ariadne-1 protein homol 53.8 3.8 0.00013 24.6 0.7 17 122-138 1-17 (60)
145 2cu8_A Cysteine-rich protein 2 53.2 8.3 0.00029 23.4 2.3 41 88-140 9-49 (76)
146 1wev_A Riken cDNA 1110020M19; 52.6 5.4 0.00018 25.7 1.3 50 87-136 15-72 (88)
147 3mjh_B Early endosome antigen 52.6 2.3 7.8E-05 22.7 -0.4 11 90-100 7-17 (34)
148 2co8_A NEDD9 interacting prote 51.0 12 0.00041 23.3 2.8 43 87-141 14-56 (82)
149 1wyh_A SLIM 2, skeletal muscle 48.5 17 0.0006 21.5 3.2 41 88-139 5-45 (72)
150 2d8y_A Eplin protein; LIM doma 47.1 24 0.00081 22.2 3.8 40 88-139 15-54 (91)
151 1x4k_A Skeletal muscle LIM-pro 46.9 14 0.00049 21.9 2.6 41 89-140 6-46 (72)
152 2jne_A Hypothetical protein YF 46.4 5.9 0.0002 26.4 0.7 40 89-138 33-72 (101)
153 1g47_A Pinch protein; LIM doma 46.1 15 0.00051 22.2 2.6 42 87-139 10-51 (77)
154 2d8z_A Four and A half LIM dom 45.9 19 0.00066 21.2 3.1 39 88-139 5-43 (70)
155 2pv0_B DNA (cytosine-5)-methyl 45.4 14 0.00048 30.6 3.0 46 86-135 91-147 (386)
156 1x63_A Skeletal muscle LIM-pro 45.1 21 0.00072 21.8 3.3 42 88-140 15-56 (82)
157 1x4l_A Skeletal muscle LIM-pro 44.9 23 0.00079 21.0 3.4 41 88-139 5-47 (72)
158 3f6q_B LIM and senescent cell 44.6 12 0.0004 22.2 1.9 42 87-139 10-51 (72)
159 1x61_A Thyroid receptor intera 44.2 23 0.00077 21.0 3.2 39 88-138 5-44 (72)
160 2dj7_A Actin-binding LIM prote 43.5 12 0.0004 23.3 1.8 40 87-138 14-53 (80)
161 1x64_A Alpha-actinin-2 associa 42.7 36 0.0012 21.2 4.2 40 87-139 24-63 (89)
162 3kv5_D JMJC domain-containing 42.6 15 0.00053 31.2 2.9 48 87-135 36-87 (488)
163 2gmg_A Hypothetical protein PF 41.4 4.8 0.00017 27.1 -0.3 24 109-138 72-95 (105)
164 2zet_C Melanophilin; complex, 40.5 17 0.00057 26.0 2.4 69 86-161 66-137 (153)
165 1iml_A CRIP, cysteine rich int 40.4 14 0.00047 22.4 1.8 11 90-100 29-39 (76)
166 1nyp_A Pinch protein; LIM doma 40.2 25 0.00085 20.5 2.9 39 88-139 5-43 (66)
167 3vhs_A ATPase wrnip1; zinc fin 39.7 9.9 0.00034 18.9 0.8 15 129-143 8-22 (29)
168 3kv4_A PHD finger protein 8; e 39.1 5 0.00017 33.9 -0.6 48 90-137 6-57 (447)
169 2o35_A Hypothetical protein DU 39.0 12 0.00039 25.0 1.3 13 113-125 42-54 (105)
170 3fyb_A Protein of unknown func 39.0 12 0.0004 25.0 1.3 13 113-125 41-53 (104)
171 2jrp_A Putative cytoplasmic pr 38.5 13 0.00045 23.8 1.4 14 90-103 4-17 (81)
172 2d8x_A Protein pinch; LIM doma 36.8 22 0.00077 21.0 2.3 40 88-140 5-44 (70)
173 3kqi_A GRC5, PHD finger protei 36.3 30 0.001 21.2 2.9 47 88-135 10-60 (75)
174 2cor_A Pinch protein; LIM doma 36.2 47 0.0016 20.2 3.8 42 86-140 13-54 (79)
175 2dar_A PDZ and LIM domain prot 35.0 24 0.00082 22.1 2.4 40 87-139 24-63 (90)
176 1x68_A FHL5 protein; four-and- 34.9 29 0.00098 20.9 2.6 40 89-139 6-47 (76)
177 2rsd_A E3 SUMO-protein ligase 34.3 12 0.0004 22.7 0.7 47 88-135 10-64 (68)
178 2cur_A Skeletal muscle LIM-pro 32.8 24 0.00083 20.7 2.0 38 88-138 5-42 (69)
179 2kdx_A HYPA, hydrogenase/ureas 31.5 24 0.00082 23.7 2.0 23 108-137 77-100 (119)
180 1l8d_A DNA double-strand break 30.8 7.4 0.00025 25.9 -0.8 13 127-139 47-59 (112)
181 2l3k_A Rhombotin-2, linker, LI 29.8 24 0.00081 23.7 1.7 32 90-123 38-69 (123)
182 1x6a_A LIMK-2, LIM domain kina 29.6 40 0.0014 20.4 2.7 37 89-138 16-52 (81)
183 1v6g_A Actin binding LIM prote 29.3 31 0.0011 21.0 2.1 38 89-139 16-53 (81)
184 2rgt_A Fusion of LIM/homeobox 29.1 9.3 0.00032 27.3 -0.5 43 90-139 35-77 (169)
185 2jmo_A Parkin; IBR, E3 ligase, 28.8 4.7 0.00016 25.5 -1.9 14 109-122 55-68 (80)
186 1wig_A KIAA1808 protein; LIM d 28.7 48 0.0016 19.8 2.9 37 89-138 6-42 (73)
187 2l4z_A DNA endonuclease RBBP8, 28.5 28 0.00096 23.5 1.9 39 88-138 61-99 (123)
188 1rut_X Flinc4, fusion protein 28.4 37 0.0013 24.4 2.7 27 90-118 71-97 (188)
189 2das_A Zinc finger MYM-type pr 28.0 46 0.0016 20.0 2.5 36 88-123 20-56 (62)
190 2xjy_A Rhombotin-2; oncoprotei 27.9 40 0.0014 22.5 2.6 37 90-137 68-104 (131)
191 1j2o_A FLIN2, fusion of rhombo 27.4 51 0.0017 21.6 3.1 13 111-123 52-64 (114)
192 2ehe_A Four and A half LIM dom 26.7 45 0.0015 20.2 2.5 40 89-139 16-55 (82)
193 2cuq_A Four and A half LIM dom 26.1 48 0.0016 20.0 2.6 38 89-139 16-53 (80)
194 2pk7_A Uncharacterized protein 25.1 18 0.0006 22.3 0.3 16 122-138 4-19 (69)
195 2lq6_A Bromodomain-containing 25.1 29 0.00098 22.2 1.4 32 89-121 18-50 (87)
196 2egq_A FHL1 protein; LIM domai 24.4 48 0.0017 19.7 2.3 39 89-139 16-58 (77)
197 1a7i_A QCRP2 (LIM1); LIM domai 24.3 18 0.00062 22.1 0.3 40 88-139 7-46 (81)
198 1x3h_A Leupaxin; paxillin fami 24.3 38 0.0013 20.4 1.8 38 89-139 16-53 (80)
199 2kpi_A Uncharacterized protein 24.1 30 0.001 20.3 1.2 13 89-101 11-23 (56)
200 2xqn_T Testin, TESS; metal-bin 24.0 48 0.0016 21.9 2.4 46 88-139 30-75 (126)
201 3pwf_A Rubrerythrin; non heme 24.0 43 0.0015 24.1 2.3 25 104-136 138-162 (170)
202 1x4i_A Inhibitor of growth pro 23.8 53 0.0018 20.0 2.4 45 88-135 6-54 (70)
203 1x62_A C-terminal LIM domain p 23.3 37 0.0013 20.6 1.6 37 88-137 15-51 (79)
204 2l8s_A Integrin alpha-1; trans 22.8 1.2E+02 0.0042 17.6 4.5 31 1-34 1-31 (54)
205 2jtn_A LIM domain-binding prot 21.9 8.2 0.00028 27.9 -2.0 27 112-141 107-133 (182)
206 2dlo_A Thyroid receptor-intera 21.8 47 0.0016 20.1 1.9 39 88-139 15-53 (81)
207 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.2 28 0.00095 23.2 0.7 27 109-135 7-43 (140)
208 2i5o_A DNA polymerase ETA; zin 21.0 24 0.00083 19.2 0.3 17 128-144 10-26 (39)
209 2jny_A Uncharacterized BCR; st 20.9 17 0.00058 22.3 -0.4 18 121-139 5-22 (67)
210 2iyb_E Testin, TESS, TES; LIM 20.8 57 0.0019 18.9 2.0 39 89-139 3-44 (65)
211 1m3v_A FLIN4, fusion of the LI 20.3 59 0.002 21.5 2.3 50 89-141 33-83 (122)
212 2jmi_A Protein YNG1, ING1 homo 20.0 31 0.0011 22.3 0.7 44 86-134 24-74 (90)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=109.02 Aligned_cols=79 Identities=32% Similarity=0.681 Sum_probs=64.6
Q ss_pred CCCCCCCCHHHHHhhCCCcccccccccCCCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCC
Q 030902 57 IPENAPVSARLIREILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP 136 (169)
Q Consensus 57 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 136 (169)
.....+++++.+.+ +|...+.... .....+..|+||++.+..++.+..+ +|+|.||..||..|+.. +.+||+||..
T Consensus 11 ~~~~~~~s~~~i~~-lp~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~ 86 (91)
T 2l0b_A 11 MVANPPASKESIDA-LPEILVTEDH-GAVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK-SGTCPVCRCM 86 (91)
T ss_dssp SSCCCCCCHHHHHT-SCEEECCTTC-SSSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT-TCBCTTTCCB
T ss_pred CcCCCCCCHHHHHh-CCCeeecccc-cccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc-CCcCcCcCcc
Confidence 34556778888766 8988877654 2334567899999999999888888 79999999999999986 7799999998
Q ss_pred CCC
Q 030902 137 FVP 139 (169)
Q Consensus 137 ~~~ 139 (169)
+.+
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=101.74 Aligned_cols=66 Identities=35% Similarity=0.851 Sum_probs=54.7
Q ss_pred hCCCcccccccccCCCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 71 ILPVIKFQDLEMVNGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 71 ~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
.+|..+++... ...++..|+||++++..++.++.+ +|+|.||..|+.+|+.. +.+||+||+.+.+.
T Consensus 8 ~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 8 QLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred hCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 36777776543 334567899999999999888888 79999999999999987 77999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.56 E-value=1.6e-15 Score=92.94 Aligned_cols=51 Identities=51% Similarity=1.067 Sum_probs=45.1
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
++.+|+||++++..++.+..+++|+|.||..|+.+|+.. +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 356899999999998888888559999999999999986 789999998864
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=94.37 Aligned_cols=53 Identities=42% Similarity=1.043 Sum_probs=46.5
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...+..|+||++.+..+..+..+ +|+|.||..|+..|+.. +.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 35566899999999888888888 89999999999999987 7789999998754
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.8e-15 Score=95.18 Aligned_cols=52 Identities=44% Similarity=0.999 Sum_probs=46.6
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..+..|+||++.+..+..+..+ +|+|.||..|+.+|+.. +.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4466899999999999888888 89999999999999987 6799999998864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=9.8e-15 Score=95.64 Aligned_cols=54 Identities=33% Similarity=0.979 Sum_probs=47.6
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
..+..|+||++.|..+..+..+ +|+|.||..||.+|+.. +.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc-CCcCcCcCCccCCcc
Confidence 4466899999999998888888 89999999999999986 779999999987654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.5e-15 Score=97.09 Aligned_cols=53 Identities=26% Similarity=0.782 Sum_probs=42.0
Q ss_pred cccccccccccccc-----------CceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 87 PPENCAVCLYEFEG-----------GEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 87 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
+++.|+||+++|.. ++.++.+++|+|.||..||.+|+.. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 34568888777753 4556677579999999999999986 77999999987643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.48 E-value=2.6e-14 Score=87.33 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=42.0
Q ss_pred ccccccccccccccCc-eeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 87 PPENCAVCLYEFEGGE-EIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.+..|+||++.+.+++ .+..+ +|+|.||..|+.+|+.. +.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4568999999997654 45555 89999999999999997 689999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=1.3e-13 Score=96.46 Aligned_cols=53 Identities=28% Similarity=0.642 Sum_probs=41.4
Q ss_pred ccccccccccccccCc---------------eeeEcCCCCCcchHhhHHHHHhc----CCCCCCccCCCCCCC
Q 030902 87 PPENCAVCLYEFEGGE---------------EIRWLRNCKHIFHRACLDPWMDH----DQKTCPLCRTPFVPD 140 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~----~~~~CP~Cr~~~~~~ 140 (169)
.++.|+||++.|..+. .+..+ +|+|.||..||..|+.. .+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 23345 89999999999999952 356899999987543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=8.6e-14 Score=89.26 Aligned_cols=55 Identities=24% Similarity=0.576 Sum_probs=45.1
Q ss_pred CccccccccccccccC----ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGG----EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.++..|+||++.+.++ ..+..+ +|||.||..|+.+|+.. +.+||+||..+...++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccChhhe
Confidence 4466899999999764 344555 89999999999999987 7799999999876543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=86.80 Aligned_cols=52 Identities=25% Similarity=0.605 Sum_probs=42.8
Q ss_pred CccccccccccccccC----ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 86 DPPENCAVCLYEFEGG----EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
.+...|+||++.+.++ ..+..+ +|+|.||..|+..|+.. +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4456899999999764 233455 89999999999999987 7799999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.39 E-value=2e-13 Score=94.98 Aligned_cols=51 Identities=27% Similarity=0.705 Sum_probs=42.2
Q ss_pred CccccccccccccccCc---------------eeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGE---------------EIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
..++.|+||++.|..+. .+..+ +|+|.||..||..|+.. +.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45678999999998541 24555 89999999999999986 889999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=86.16 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=43.7
Q ss_pred ccccccccccccccC----ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGG----EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
++..|+||++.+..+ ..+..+ +|||.||..|+.+|+.. +.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 356899999999764 334455 89999999999999987 779999999987654
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=83.25 Aligned_cols=52 Identities=19% Similarity=0.574 Sum_probs=43.3
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.++..|+||++.+.++..+ +|||.||..|+..|+......||+||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3456899999999877654 899999999999999644678999999987554
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.5e-13 Score=87.59 Aligned_cols=54 Identities=26% Similarity=0.766 Sum_probs=43.6
Q ss_pred CCccccccccccccccCceeeEcCCCC-----CcchHhhHHHHHhcCC-CCCCccCCCCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCK-----HIFHRACLDPWMDHDQ-KTCPLCRTPFVPD 140 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~~-~~CP~Cr~~~~~~ 140 (169)
..++..|.||++++..++.+ .+ +|. |.||..||++|+..+. .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34456899999999877665 46 796 9999999999998632 5899999988643
No 16
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=7.7e-13 Score=83.65 Aligned_cols=55 Identities=20% Similarity=0.529 Sum_probs=43.8
Q ss_pred ccccccccc-ccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 88 PENCAVCLY-EFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 88 ~~~C~ICl~-~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
+..|+||++ .+.++.....+.+|||.||..|+.+|+..+...||+||..+...++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 458999999 7877764433338999999999999987656789999999876543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.4e-13 Score=86.83 Aligned_cols=51 Identities=31% Similarity=0.528 Sum_probs=42.3
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.++..|+||++.+.++.. + +|+|.||..|+..|+.. +..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~---~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVS---L-PCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSEEE---E-TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCCEE---c-cCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 445689999999877643 3 89999999999999986 679999999886433
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.30 E-value=2.7e-13 Score=95.88 Aligned_cols=52 Identities=25% Similarity=0.544 Sum_probs=1.6
Q ss_pred CccccccccccccccCc--------------eeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGE--------------EIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
..++.|+||+++|..+. ....+++|+|.||..||.+|+.. +.+||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 45679999999997532 12232389999999999999987 789999999763
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=85.19 Aligned_cols=55 Identities=22% Similarity=0.553 Sum_probs=44.3
Q ss_pred CccccccccccccccCce-eeEcCCCCCcchHhhHHHHHhcC--CCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEE-IRWLRNCKHIFHRACLDPWMDHD--QKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~~~~~~ 141 (169)
.+...|+||++.+...+. ...+ +|||.||..|+..|+..+ ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 345689999999987654 4455 899999999999999863 368999999876543
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=82.98 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=42.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.++..|+||++.+.++.. +++|+|.||..||..|+.. +..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATT---ITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEE---CSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCE---ECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 345689999999877532 2389999999999999986 779999999987654
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.28 E-value=1.6e-12 Score=82.71 Aligned_cols=49 Identities=33% Similarity=0.798 Sum_probs=41.1
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
.+..|+||++.+.++ +..+ +|||.||..|+..|+.. +.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMAL-PCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEET-TTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEec-CCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 356899999998754 3455 89999999999999986 7799999998853
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=82.14 Aligned_cols=52 Identities=23% Similarity=0.553 Sum_probs=42.0
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc--CCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH--DQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~~~~~ 141 (169)
..+..|+||++.+.++.. + +|||.||..|+..|+.. ++..||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~~~~~---~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVT---I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSEEE---C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEE---c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345689999999886544 3 89999999999999963 3568999999986544
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.6e-13 Score=84.75 Aligned_cols=49 Identities=31% Similarity=0.846 Sum_probs=41.3
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
.++..|+||++.+.. ..+ +|+|.||..|+..|+.. +.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDR-HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCC-CSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHC-cCcCCCcCCcccCC
Confidence 345689999999876 345 89999999999999985 88999999988654
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=83.35 Aligned_cols=48 Identities=23% Similarity=0.573 Sum_probs=40.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.....|+||++.+..+. .+ +|+|.||..|+..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV---VT-KCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEE---EC-TTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCee---Ec-cCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 34568999999997754 34 89999999999999986 779999999875
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=82.01 Aligned_cols=51 Identities=18% Similarity=0.430 Sum_probs=41.2
Q ss_pred CccccccccccccccCceeeEcCC-CCCcchHhhHHHHHhcC-CCCCCccCCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRN-CKHIFHRACLDPWMDHD-QKTCPLCRTPFVPD 140 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~ 140 (169)
..+..|+||++.+.++.. + + |||.||..||..|+... ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVV---I-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCEE---C-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCeE---c-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 345689999999987654 4 7 99999999999999862 25899999976543
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.23 E-value=4.1e-12 Score=82.98 Aligned_cols=52 Identities=17% Similarity=0.436 Sum_probs=43.3
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.++..|+||++.+.++..+ +|||.||..||..|+..++.+||+||.++...+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~----~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV----STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE----TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccCCEEc----CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 3456899999999887544 899999999999999865778999999886543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=2.8e-12 Score=87.98 Aligned_cols=52 Identities=21% Similarity=0.667 Sum_probs=42.3
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
++..|+||++.+..+.. .+ +|||.||..||..|+...+..||+||.++...+
T Consensus 21 ~~~~C~IC~~~~~~p~~--~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARL--CP-HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSEEE--CT-TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCccc--cC-CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 34589999999976533 14 899999999999999874468999999986544
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20 E-value=5.5e-12 Score=91.30 Aligned_cols=47 Identities=32% Similarity=0.820 Sum_probs=40.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|+||++.+..+.. + +|||.||..||..|+.. +.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~---~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT---L-NCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEE---E-TTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceE---C-CCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 3479999999977643 4 89999999999999986 7899999999864
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.17 E-value=7.8e-12 Score=81.60 Aligned_cols=53 Identities=21% Similarity=0.603 Sum_probs=43.4
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC------CCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD------QKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~~CP~Cr~~~~~~~~ 142 (169)
.++..|+||++.+.++..+ +|||.||..|+..|+... ...||+||..+...++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSSCCCC----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCCeeEC----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 3456899999999876554 899999999999999752 5679999999876554
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=1.4e-11 Score=87.61 Aligned_cols=53 Identities=25% Similarity=0.596 Sum_probs=43.7
Q ss_pred ccccccccccccccC----ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGG----EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
++..|+||++.+.++ ..+..+ +|||.||..||.+|+.. +.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCcccc
Confidence 456899999999765 334555 89999999999999986 779999999887544
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.7e-11 Score=75.86 Aligned_cols=44 Identities=27% Similarity=0.622 Sum_probs=36.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc--CCCCCCcc
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH--DQKTCPLC 133 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~~CP~C 133 (169)
.++..|+||++.+.++..+ +|||.||..||.+|+.. ++..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC----TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEe----CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456899999999876444 89999999999999984 35689998
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=79.69 Aligned_cols=51 Identities=27% Similarity=0.702 Sum_probs=42.0
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC-----CCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD-----QKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~~CP~Cr~~~~~~~ 141 (169)
.+..|+||++.+..+. .+ +|+|.||..|+..|+... ...||.||..+...+
T Consensus 18 ~~~~C~IC~~~~~~p~---~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSSCE---EC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCcce---eC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 4568999999998765 34 899999999999999862 567999999987543
No 33
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=3.4e-11 Score=78.33 Aligned_cols=51 Identities=20% Similarity=0.572 Sum_probs=41.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC-CCCCCccCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD-QKTCPLCRTPFVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~ 139 (169)
+..+.|+||++.+..++... .|+|.||..||.+|++.. +.+||+||..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34568999999998765443 799999999999999862 2689999998753
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=86.64 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=41.0
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|+||++.+..+..+ +|||.||..|+..|+..+...||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEe----eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45899999999876444 8999999999999998645589999998865
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=73.79 Aligned_cols=44 Identities=32% Similarity=0.838 Sum_probs=36.1
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc--CCCCCCcc
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH--DQKTCPLC 133 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~~CP~C 133 (169)
.+...|+||++.+.++..+ +|+|.||..|+.+|+.. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCC----SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeC----CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456899999999887443 89999999999999653 46789998
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.13 E-value=8e-11 Score=79.09 Aligned_cols=48 Identities=19% Similarity=0.444 Sum_probs=40.0
Q ss_pred CccccccccccccccCceeeEcCC-CCCcchHhhHHHHHhcC-CCCCCccCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRN-CKHIFHRACLDPWMDHD-QKTCPLCRTPF 137 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~ 137 (169)
.++..|+||++.|.++..+ + |||.||..||..|+... ...||+||..+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEEC----TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceEC----CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3456899999999877544 7 99999999999999752 36899999987
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.1e-11 Score=78.39 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=42.2
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc-----CCCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH-----DQKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~~CP~Cr~~~~~~~ 141 (169)
+...|+||++.+..+..+ +|+|.||..|+..|+.. +...||.||..+...+
T Consensus 18 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSL----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSSCBCC----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCCceeC----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456899999999876544 89999999999999975 2568999999987644
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=83.05 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=40.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+||++.+..+..+ ++|||.||..|+..|+.. +..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMII---PQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEEC---TTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEE---CCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 45899999999765322 389999999999999986 7799999998864
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=2.8e-11 Score=85.96 Aligned_cols=55 Identities=24% Similarity=0.576 Sum_probs=44.5
Q ss_pred CccccccccccccccC----ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGG----EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.....|+||++.+..+ .....+ +|||.||..|+++|+.. +.+||+||..+..+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcc
Confidence 3456899999999764 233445 89999999999999997 7799999999976553
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=3.2e-11 Score=84.55 Aligned_cols=50 Identities=30% Similarity=0.694 Sum_probs=42.1
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
+..|+||++.+.++.. + +|||.||..|+..|+......||+||.++...+
T Consensus 23 ~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADPVE---T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSEEE---C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCcEE---c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4589999999977644 3 899999999999999865668999999986544
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=7e-11 Score=83.19 Aligned_cols=52 Identities=19% Similarity=0.555 Sum_probs=42.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.++..|+||++.+..+.. + +|||.||..|+..|+..+..+||+||.++...+
T Consensus 16 ~~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREAVQ---T-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSEEE---C-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCeEE---C-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 445689999999987633 4 899999999999999874459999999987543
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=1.1e-10 Score=76.75 Aligned_cols=56 Identities=23% Similarity=0.564 Sum_probs=42.4
Q ss_pred CccccccccccccccCc-eeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGE-EIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.++..|+||++.+...+ .+..+ +|||.||..|+..+.......||.||.++....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34568999999986443 22223 5999999999999886556789999999876543
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.2e-11 Score=81.92 Aligned_cols=49 Identities=24% Similarity=0.689 Sum_probs=40.5
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCC--CCCCccCCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQ--KTCPLCRTPFVPD 140 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~~CP~Cr~~~~~~ 140 (169)
...|+||++.+..+..+ +|||.||..|+..|+..+. ..||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBC----TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEEC----CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 45899999999877554 8999999999999998522 4799999988653
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=8.8e-11 Score=81.34 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=41.4
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
.+..|+||++.+.++ +... +|||.||..|+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTII-ECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEET-TTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeC-CCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 355899999999764 3334 89999999999999986 68999999988653
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=8.3e-11 Score=86.44 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=41.6
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
...|+||++.+..+.. + +|||.||..||..|+..+...||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT---T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEE---C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEE---c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4589999999987655 3 89999999999999986455899999998754
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=9.4e-11 Score=87.06 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=41.5
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
....|+||++.+.++ +..+ +|||.||..|+..|+..++..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTK-ECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEET-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeC-CCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345899999999864 3334 8999999999999998657789999998853
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.02 E-value=2.7e-11 Score=84.79 Aligned_cols=48 Identities=19% Similarity=0.621 Sum_probs=40.9
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
++..|+||++.+..+..+ +|||.||..|+..|+..++..||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTL----PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEEC----TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEc----CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 356899999999876544 899999999999999765678999999875
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=4.1e-10 Score=75.00 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=44.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.....|+||++.|.++..+ +|||.|++.||..|+.. +.+||.||.++...++
T Consensus 12 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLLN-SPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGC
T ss_pred chheECcccCchhcCCeEC----CCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhc
Confidence 3456899999999988665 89999999999999986 7899999998876443
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=2.2e-10 Score=83.38 Aligned_cols=49 Identities=16% Similarity=0.435 Sum_probs=41.1
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.++..|+||++.+.++.. + +|||.||..||..|+..+...||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~pv~---~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ---A-QCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE---C-TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEE---C-CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456689999999988744 3 899999999999999864558999999763
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.90 E-value=7.2e-10 Score=92.59 Aligned_cols=50 Identities=22% Similarity=0.628 Sum_probs=41.0
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
....|+||++.+..+.. + +|||.||..|+..|+......||+||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~---l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKI---E-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEE---E-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEE---e-CCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999866533 3 89999999999999984477899999988643
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=4.4e-10 Score=68.99 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=37.7
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
.+...|+||++.+..+..+ +|||.||..|+..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS----TTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEc----CCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 4456899999999887444 89999999998873 5689999998753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.87 E-value=5e-10 Score=76.88 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=44.9
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.....|+||++.|.++..+ +|||.|++.||..|+.. +.+||.||.++...++
T Consensus 27 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLN-SPTDPFNRQTLTESML 78 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSS
T ss_pred cHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhc
Confidence 4456899999999998766 89999999999999985 7899999999876544
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=9.4e-10 Score=75.25 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=44.3
Q ss_pred CccccccccccccccCceeeEcCCCC-CcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCK-HIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.+...|+||++.|.++..+ +|| |.|++.||..|+.. +.+||.||.++...++
T Consensus 20 p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhc
Confidence 3456899999999988665 899 99999999999986 7799999999876443
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=1.3e-09 Score=68.80 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=39.4
Q ss_pred CccccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.++..|.||++...+.. +..+ +|||. |+..|+..|... +..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~~-~~~~-pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-IVHG-KTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-EEET-TEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEE-EECC-CCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 34568999999865442 2234 89999 899999999985 778999999874
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.80 E-value=2.4e-09 Score=67.30 Aligned_cols=50 Identities=18% Similarity=0.414 Sum_probs=39.2
Q ss_pred CccccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.....|.||++...+.. +..+ ||||. |+..|+..|... ...||+||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~-pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHG-RTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEET-TEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEec-CCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 34568999999864432 2234 89998 999999999876 678999999874
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=2.2e-09 Score=79.89 Aligned_cols=51 Identities=20% Similarity=0.555 Sum_probs=42.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
.+...|+||++.+.++.. + +|||.||..|+..|+..+..+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~pv~---~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQ---T-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSEEE---C-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCcEE---C-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 456689999999988743 4 89999999999999986455999999998754
No 57
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=3.2e-09 Score=71.64 Aligned_cols=56 Identities=23% Similarity=0.606 Sum_probs=43.3
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc----C---CCCCCc--cCCC--CCCChHH
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH----D---QKTCPL--CRTP--FVPDEMQ 143 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~---~~~CP~--Cr~~--~~~~~~~ 143 (169)
....|+||++++..++.+... +|+|.||..|+..++.. + ...||. |+.. +.+....
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~-~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIA-QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEET-TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcC-CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 355899999999877666555 89999999999999864 1 236999 9998 6654443
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=2.5e-09 Score=84.67 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=44.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.....|+||++.|.++..+ +|||.|+..||..|+..++.+||+||.++...++
T Consensus 206 ~~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CcccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 4566899999999988665 8999999999999998655569999999875443
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=9.2e-10 Score=90.27 Aligned_cols=54 Identities=22% Similarity=0.572 Sum_probs=40.9
Q ss_pred CCccccccccccccccCcee----eEcCCCCCcchHhhHHHHHhcCC----------CCCCccCCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEI----RWLRNCKHIFHRACLDPWMDHDQ----------KTCPLCRTPFV 138 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~----~~l~~C~H~fh~~Ci~~wl~~~~----------~~CP~Cr~~~~ 138 (169)
+....+|+||++.+..+..+ ...++|+|.||..|+.+|+.... .+||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35667899999998873333 22237999999999999997511 36999999875
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.5e-09 Score=76.16 Aligned_cols=46 Identities=26% Similarity=0.609 Sum_probs=38.3
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+||++.+..+..+ ++|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~pv~~---~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSCBCC---CSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCccEe---CCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 45899999999776433 27999999999999986 589999998854
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.73 E-value=2.1e-09 Score=69.63 Aligned_cols=43 Identities=21% Similarity=0.529 Sum_probs=35.7
Q ss_pred cccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|.||++.+.+... + +|||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~~~~---~-pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVF---V-PCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEE---E-TTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEE---c-CCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4589999998766543 4 89999 999999988 589999998753
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.72 E-value=1.2e-08 Score=63.51 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=36.9
Q ss_pred CccccccccccccccCceeeEcCCCC--C---cchHhhHHHHHhc-CCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCK--H---IFHRACLDPWMDH-DQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~-~~~~CP~Cr~~~~ 138 (169)
++...|.||+++..+ .+ .+ ||. + .||..|+.+|+.. ++.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455689999998432 33 34 655 4 9999999999975 3568999998875
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=8.7e-09 Score=69.69 Aligned_cols=50 Identities=14% Similarity=0.383 Sum_probs=39.8
Q ss_pred CccccccccccccccCceeeEcCC-CCCcchHhhHHHHHhcC-----CCCCCc--cCCC-CCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRN-CKHIFHRACLDPWMDHD-----QKTCPL--CRTP-FVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~fh~~Ci~~wl~~~-----~~~CP~--Cr~~-~~~ 139 (169)
.....|+||++.|.++..+ + |||.|++.||..|+..+ ..+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~----~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN----KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE----SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCCEEc----CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3456899999999887554 5 99999999999999752 248999 9865 543
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.64 E-value=8.4e-09 Score=77.78 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=44.2
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
.....|+||++.|.++..+ +|||.|+..||..|+..+..+||.|+.++...++
T Consensus 104 p~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cHhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 4566899999999988665 8999999999999998644479999998876444
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.3e-08 Score=64.68 Aligned_cols=43 Identities=21% Similarity=0.547 Sum_probs=34.9
Q ss_pred cccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|+||++.+.+...+ +|||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~----pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFV----PCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCS----SSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEe----cCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 45899999998765444 89999 99999964 4589999998854
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=9.5e-08 Score=60.83 Aligned_cols=45 Identities=24% Similarity=0.635 Sum_probs=35.4
Q ss_pred CccccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..+..|.||++...+ +..+ ||+|. |+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~-pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLL-PCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEET-TTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEE-CCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 445689999998644 3445 99999 99999984 4589999998854
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=5.9e-08 Score=63.58 Aligned_cols=43 Identities=26% Similarity=0.603 Sum_probs=34.4
Q ss_pred cccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|.||++.+.+. ..+ +|||. |+..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~---v~~-pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFC-PCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE---EEE-TTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE---EEE-CCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 44899999987554 334 89999 999999875 399999998754
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2e-07 Score=73.95 Aligned_cols=54 Identities=17% Similarity=0.438 Sum_probs=42.0
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC-CCCCCc--cCCCCCCChH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD-QKTCPL--CRTPFVPDEM 142 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~~CP~--Cr~~~~~~~~ 142 (169)
.....|+||++.|..+.. .. .|||.|++.||..|+..+ ...||+ |+..+...++
T Consensus 179 ~~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 345589999999977743 33 799999999999999752 346999 9997765443
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.5e-07 Score=76.34 Aligned_cols=43 Identities=26% Similarity=0.620 Sum_probs=35.8
Q ss_pred cccccccccccccCceeeEcCCCCCc-chHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHI-FHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
+..|+||++.+.....+ +|||. ||..|+..| ..||+||.++..
T Consensus 295 ~~~C~IC~~~~~~~v~l----pCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFI----PCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCEEEE----TTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCceEEc----CCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45899999998765444 89999 999999987 489999998753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.16 E-value=5.2e-07 Score=56.20 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=41.7
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCChH
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 142 (169)
..|+||++.+.++ +... ++||.|.+.||.+|+.. +.+||+.+.++...++
T Consensus 4 ~~CpIs~~~m~dP--V~~~-~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP--VLSP-KSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE--EEET-TTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC--EEeC-CCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhc
Confidence 4799999999876 3332 79999999999999986 6689999999876665
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.04 E-value=4.4e-06 Score=56.68 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=36.5
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
-|.+|--.+. ...+.+ ||+|+|+.+|+..|..++.++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeec-cccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 3666655543 345566 9999999999999987667899999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.80 E-value=1.2e-05 Score=63.14 Aligned_cols=50 Identities=18% Similarity=0.552 Sum_probs=39.6
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC-CCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD-QKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~ 139 (169)
.-..|.||.+-...+... +.|+|.||..|+..|+... +..||.|+..++.
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 356899999998876333 3599999999999999752 3489999998754
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.90 E-value=0.019 Score=35.87 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=33.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcC---CCCCCccCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHD---QKTCPLCRTPF 137 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~~CP~Cr~~~ 137 (169)
.....|.||.+. ++ +.....|...||..|++..+... .-.||.|.+..
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 445679999753 33 44455899999999998877542 22599997643
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.89 E-value=0.0083 Score=40.01 Aligned_cols=49 Identities=24% Similarity=0.682 Sum_probs=38.2
Q ss_pred CccccccccccccccCceeeEcCCCC-CcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCK-HIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.+...|..|+-..+ ..| .|. |..|..|+...+.. ...||+|+.+++.+-
T Consensus 26 ~G~~nCKsCWf~~k--~LV----~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLV----ECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--SEE----ECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCS
T ss_pred cCcccChhhccccC--Cee----eecchhhHHHHHHHHHhh-ccCCcccCCcCCcce
Confidence 44568999987643 344 465 99999999999876 668999999998654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.37 E-value=0.018 Score=38.32 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=25.8
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHH
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDP 121 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 121 (169)
+..|.||.+++..+....-+ .|+|.|+..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECC-cCChHHhHHHCHH
Confidence 45899999875444444446 8999999999998
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.89 E-value=0.01 Score=36.57 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=34.9
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHh----cCCCCCCccCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----HDQKTCPLCRTP 136 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~ 136 (169)
.+...|++|...+..+......-.|...||..|+.--.. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 445689999988765544544457889999999864321 135669999653
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.10 E-value=0.07 Score=32.53 Aligned_cols=47 Identities=36% Similarity=0.815 Sum_probs=32.3
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
+..+..|.+|... + .+.....|...||..|+..-+.. +.-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4556689999873 3 34444478899999999875432 2235999964
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.21 E-value=0.14 Score=31.67 Aligned_cols=36 Identities=28% Similarity=0.697 Sum_probs=26.9
Q ss_pred CCccccccccccccccCceeeEcC-CCCCcchHhhHH
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLR-NCKHIFHRACLD 120 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~ 120 (169)
+.+...|.+|...+..+......- .|...||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345668999999987777777666 789999999974
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.06 E-value=0.14 Score=38.30 Aligned_cols=51 Identities=16% Similarity=0.374 Sum_probs=35.9
Q ss_pred ccccccccccccCce---eeEcCCCCCcchHhhHHH------HHh----cCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGGEE---IRWLRNCKHIFHRACLDP------WMD----HDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~---~~~l~~C~H~fh~~Ci~~------wl~----~~~~~CP~Cr~~~~~ 139 (169)
..|+||...+..++. ......|...||..|..- -+. .....||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 369999999887762 555558889999999742 111 015689999876543
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.42 E-value=0.2 Score=32.01 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=33.3
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHh----cCCCCCCccCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----HDQKTCPLCRTPF 137 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~ 137 (169)
.....| ||.............-.|...||..|+.--.. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 444567 99888754444444447889999999852211 1355799997654
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.72 E-value=0.094 Score=39.67 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=34.3
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
+..++.|.+|... + .+.....|...||..|+..-+.. +.-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4456689999753 3 35555589999999999776543 223599997754
No 82
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.21 E-value=0.28 Score=32.69 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=31.9
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhc--CCCCCCccCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH--DQKTCPLCRTPF 137 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~ 137 (169)
...| ||......+..+ ....|...||..|+..-... ....||.|+..-
T Consensus 28 ~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp BCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred CEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 3467 898776555444 44488899999998753222 134699997543
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.73 E-value=0.1 Score=31.77 Aligned_cols=49 Identities=31% Similarity=0.647 Sum_probs=32.2
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
+..+..|.||.+. ++.+ ....|...||..|+..-+.. +.-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456689999853 3333 33378889999999864432 123499997653
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.36 E-value=0.17 Score=31.88 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=34.5
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
+.....|.||..... ++.....-.|...||..|+..-... ..-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 344567999987753 4344444578899999998754432 234599996543
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.20 E-value=0.83 Score=30.00 Aligned_cols=52 Identities=19% Similarity=0.456 Sum_probs=36.8
Q ss_pred ccccccccccccc---cCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 87 PPENCAVCLYEFE---GGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 87 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
....|.||-+++. +++...-...|+--.|+.|.+-=...+++.||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3458999999864 333222222566778999998766667889999998874
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.16 E-value=0.15 Score=29.95 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=30.1
Q ss_pred cccccccccccCceeeEcC-CCCCcchHhhHHHHH---hcCCCCCCccC
Q 030902 90 NCAVCLYEFEGGEEIRWLR-NCKHIFHRACLDPWM---DHDQKTCPLCR 134 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl---~~~~~~CP~Cr 134 (169)
.|.+|...+..+......- .|...||..|+.--. ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876555555554 588899999975211 12467799885
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.98 E-value=0.12 Score=38.35 Aligned_cols=47 Identities=30% Similarity=0.680 Sum_probs=32.7
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
.++.|.+|... ++ +.....|...||..|+..-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999854 44 4444578899999998765543 223599997754
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.91 E-value=0.25 Score=32.16 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=24.1
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
..++.|.||- .+..++...-- -|+-+||..|+.+.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 3566899994 34444433222 58899999999986
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.74 E-value=0.22 Score=28.93 Aligned_cols=45 Identities=29% Similarity=0.676 Sum_probs=29.5
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
.|.||...-..+ .+.....|...||..|++.=+.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764333 34444488899999999754432 1234999965
No 90
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.35 E-value=0.13 Score=37.55 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=32.6
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHh----cCCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----HDQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~ 135 (169)
.....| +|......+........|...||..|+.--.. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345578 99988654444555557889999999852111 13557999965
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.97 E-value=1.7 Score=28.08 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=29.6
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH 125 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 125 (169)
...-.|.+|.|.+++..-|.--..=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3445899999999998888211112399999999988865
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.78 E-value=0.94 Score=32.34 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHh----------cCCCCCCccCCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----------HDQKTCPLCRTP 136 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----------~~~~~CP~Cr~~ 136 (169)
+..++.|.+|.+. ++ +.....|...||..|+..-+. .+.=.||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4566789999874 44 444447889999999997652 123359999753
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.58 E-value=0.93 Score=30.75 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=24.3
Q ss_pred cccccccccccc-----ccCceeeEcCCCCCcchHhhHH
Q 030902 87 PPENCAVCLYEF-----EGGEEIRWLRNCKHIFHRACLD 120 (169)
Q Consensus 87 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~fh~~Ci~ 120 (169)
+...|.+|+..= ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345899998763 1233555556899999999995
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.14 E-value=0.22 Score=33.72 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHh
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD 124 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 124 (169)
+..++.|.||.+.-+..+ +.....|+..||..|+.....
T Consensus 4 ~~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccc
Confidence 345678999987633222 234448999999999987653
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.45 E-value=0.086 Score=31.48 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=30.7
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
+..+..|.+|... ++ +.....|...||..|+..-+.. +.-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456689999874 33 4444488899999999864432 1223888743
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.37 E-value=0.25 Score=31.18 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=30.3
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHH--------hcCCCCCCccCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWM--------DHDQKTCPLCRTP 136 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl--------~~~~~~CP~Cr~~ 136 (169)
...| ||......+.-+ ..-.|...||..|+.--. ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3467 898876544444 333788999999984211 1136789999653
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.36 E-value=0.38 Score=31.61 Aligned_cols=49 Identities=27% Similarity=0.637 Sum_probs=33.5
Q ss_pred CCCccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCC
Q 030902 84 NGDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTP 136 (169)
Q Consensus 84 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 136 (169)
.+..++.|.+|... ++ +.....|.-.||..|+.+=+.. +.-.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34556689999864 33 4444478889999999775543 12249999764
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=83.93 E-value=0.55 Score=31.68 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=34.2
Q ss_pred cccccccccccccCceeeEcC-CCCCcchHhhHHHHH---h------cCCCCCCccCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLR-NCKHIFHRACLDPWM---D------HDQKTCPLCRTPF 137 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl---~------~~~~~CP~Cr~~~ 137 (169)
...|.+|...+.........- .|...||..|+.--- . ..+..||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999986655555553 688999999974211 0 0245699997654
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.54 E-value=1.5 Score=30.70 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=32.3
Q ss_pred CCccccccccccccccCceeeEcCCCCCcchHhhHHHHH------h----cCCCCCCccCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWM------D----HDQKTCPLCRT 135 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl------~----~~~~~CP~Cr~ 135 (169)
+..++.|.||-+. + .+.....|...||..|+..-+ . .+.=.|+.|+.
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4556689999864 3 344445788999999999752 1 12346999954
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.35 E-value=0.35 Score=32.95 Aligned_cols=46 Identities=24% Similarity=0.647 Sum_probs=31.1
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
.|.||.+.-.+++.+.....|...||..|++.-+.. +.-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653344455555589999999998765543 1235999974
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.75 E-value=0.73 Score=28.04 Aligned_cols=51 Identities=22% Similarity=0.581 Sum_probs=33.9
Q ss_pred Cccccccccccccc-cCceeeEcCCCCCcchHhhHHHHHh------cCCCCCCccCCC
Q 030902 86 DPPENCAVCLYEFE-GGEEIRWLRNCKHIFHRACLDPWMD------HDQKTCPLCRTP 136 (169)
Q Consensus 86 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~~CP~Cr~~ 136 (169)
..+..|.||..... ++..+.....|...||..|+..-+. .+.-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45668999997643 3345555558999999999875331 123458888553
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.89 E-value=1.1 Score=27.94 Aligned_cols=46 Identities=33% Similarity=0.634 Sum_probs=28.4
Q ss_pred ccccccccccccccCceeeEcCC--CC-CcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRN--CK-HIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
+...| ||.... .+..+ ..-. |. ..||..|+. +.. ++-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44567 898764 24433 2224 55 689999997 332 234599997643
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.33 E-value=0.22 Score=30.74 Aligned_cols=46 Identities=33% Similarity=0.687 Sum_probs=31.0
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
..+..|.||... ++ +.....|...||..|+..-+.. +.-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456689999864 33 4444478899999999854432 1224999954
No 104
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.16 E-value=0.53 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=23.7
Q ss_pred ccccccccccc------cCceeeEcCCCCCcchHhhHHHH
Q 030902 89 ENCAVCLYEFE------GGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 89 ~~C~ICl~~~~------~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
+.|.+|+..-. .+..+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 47999987642 12345555589999999998743
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.96 E-value=1 Score=29.65 Aligned_cols=46 Identities=33% Similarity=0.643 Sum_probs=28.4
Q ss_pred ccccccccccccccCceeeEcCC--CC-CcchHhhHHHHHhc---CCCCCCccCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRN--CK-HIFHRACLDPWMDH---DQKTCPLCRTPF 137 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 137 (169)
+...| ||..... +..+ ..-. |. ..||..|+. +.. ++-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988643 4333 2224 55 589999987 332 244699997643
No 106
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.42 E-value=0.28 Score=29.53 Aligned_cols=45 Identities=29% Similarity=0.760 Sum_probs=29.9
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
.+..|.+|... ++ +.....|...||..|+..-+.. +.-.||.|..
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45689999874 43 4444488899999999854432 1224888843
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=77.91 E-value=0.46 Score=35.43 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=30.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRTP 136 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 136 (169)
++.|.+|.+. ++.+. ...|...||..|+..=+.. +.-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCC-CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeE-CCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 44443 3378899999999764432 22359999764
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.09 E-value=1.8 Score=27.71 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.0
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
.+...|.+|...|..-..--....||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4456899999998754433344489999999996653
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=75.75 E-value=2.5 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=32.1
Q ss_pred CCcccccccccccc-ccCceeeEcCCCCCcchHhhHHHHHh-cCCCCCCccC
Q 030902 85 GDPPENCAVCLYEF-EGGEEIRWLRNCKHIFHRACLDPWMD-HDQKTCPLCR 134 (169)
Q Consensus 85 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~~CP~Cr 134 (169)
...+..|.||.+.- .+++.+...-.|.-.||..|+..-.. .+.=.||.|+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 34566899998753 33445555558989999999874221 1122477774
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.10 E-value=2 Score=27.45 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=26.8
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
.+...|.+|...|..-..--....||.+|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455899999999754433344589999999997643
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.99 E-value=0.36 Score=31.85 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=32.1
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
..+..|.||...-..+ .+...-.|...||..|+..=+.. +.-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4455799998764333 44444589999999999753332 1224999854
No 112
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=73.82 E-value=2.2 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=24.5
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHH
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDP 121 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 121 (169)
..|.+|...|..-..--....||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 489999999875443334448999999999653
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.58 E-value=1.8 Score=30.00 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=25.7
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHH
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDP 121 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 121 (169)
....|.+|...|..-..--....||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34589999999875443334458999999999654
No 114
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=73.18 E-value=2 Score=27.92 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=26.6
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHH
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWM 123 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 123 (169)
...|.+|...|..-..--....||++|+..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999987544334445899999999976543
No 115
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.84 E-value=0.73 Score=27.71 Aligned_cols=44 Identities=34% Similarity=0.689 Sum_probs=27.1
Q ss_pred ccccccccccccccCceeeEcCC--CC-CcchHhhHHHHHhc---CCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRN--CK-HIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
+...| ||.... .+. ....-. |. ..||..|+. +.. ++-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34467 998764 343 333335 66 699999988 332 2345998854
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=72.48 E-value=3.2 Score=26.91 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=35.9
Q ss_pred Ccccccccccccc-ccCceeeEcCCCCCcchHhhHHHHHh-cCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEF-EGGEEIRWLRNCKHIFHRACLDPWMD-HDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~~CP~Cr~~~~~~~ 141 (169)
..+..|.||...- ..++.+.....|.-.||..|+..-.. .+.-.||.|........
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4566899998753 23345555558889999999875321 12334999966544433
No 117
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.61 E-value=2.4 Score=27.14 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=25.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHH
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDP 121 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 121 (169)
.+...|.+|...|..-..--....||.+|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445589999999864433333347999999999554
No 118
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.44 E-value=2.2 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.476 Sum_probs=24.9
Q ss_pred CCccccccccccccccCceeeEcCCC-CCcchHhhHHHH
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLRNC-KHIFHRACLDPW 122 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 122 (169)
+.+..-|.||.++ ..++-+ .| +-+||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEET-TTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEec-CCCCceehHHHHHHH
Confidence 3445679999987 456666 89 689999997763
No 119
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.19 E-value=3.3 Score=24.97 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=29.8
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCcc
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLC 133 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~C 133 (169)
..|-.|+..+.... ....+.|++.|+.+|=.- +...-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 36999999985432 345678999999999433 32223469988
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.49 E-value=0.5 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=31.1
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 135 (169)
....|..|...|..-..--....||.+|+..|....... ...|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHH
Confidence 345899999998654333344589999999997765543 556877743
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.19 E-value=0.84 Score=29.05 Aligned_cols=45 Identities=31% Similarity=0.651 Sum_probs=29.5
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---C-CCCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---D-QKTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 135 (169)
.|.||...-..+ .+...-.|...||..|+..=+.. + .=.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788898653333 44444588899999999854432 1 224888864
No 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=69.82 E-value=0.87 Score=27.44 Aligned_cols=44 Identities=32% Similarity=0.673 Sum_probs=26.5
Q ss_pred ccccccccccccccCceeeEcCC--CC-CcchHhhHHHHHhc---CCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRN--CK-HIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
+...| ||...- .+. ....-. |. ..||..|+. +.. ++-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34467 898763 343 333335 55 689999998 332 2345888854
No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.16 E-value=0.88 Score=35.02 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=26.8
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---C-CCCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---D-QKTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 135 (169)
.|.+|...-.. ..+...-.|...||..|+..=+.. + .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 58888764323 344455589999999999864433 1 224999964
No 124
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.12 E-value=1.1 Score=27.89 Aligned_cols=45 Identities=29% Similarity=0.635 Sum_probs=28.3
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---C-CCCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---D-QKTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 135 (169)
.|.||...-..+ .+...-.|...||..|+..=+.. + .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776543233 44444578899999999854432 1 225999864
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=68.03 E-value=4.5 Score=27.29 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=29.5
Q ss_pred CccccccccccccccCceeeEcC--CCCCcchHhhHHHHHhc---CCCCCCccCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLR--NCKHIFHRACLDPWMDH---DQKTCPLCRTPFV 138 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~~ 138 (169)
..++.|.+|.+ .+ .+.... .|...||..|+. +.. +.-.||.|+-.+.
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 45668999983 23 344443 488999999997 432 1223887755444
No 126
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.39 E-value=2.5 Score=26.15 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=31.5
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHh---cCCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD---HDQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~~CP~Cr~ 135 (169)
.....| ||......+......-.|...||..|+.--.. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344578 79887655544444447888999999864321 12456998854
No 127
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=67.39 E-value=1.1 Score=27.14 Aligned_cols=44 Identities=32% Similarity=0.670 Sum_probs=26.9
Q ss_pred ccccccccccccccCceeeEcCC--CC-CcchHhhHHHHHhc---CCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRN--CK-HIFHRACLDPWMDH---DQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 135 (169)
+...| +|.... .+. ....-. |. ..||..|+. +.. ++-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34467 998863 343 333335 54 799999987 222 2345998854
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=67.32 E-value=0.89 Score=28.95 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=28.2
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhc---CC-CCCCccCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH---DQ-KTCPLCRT 135 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~-~~CP~Cr~ 135 (169)
.|.+|...-.. ..+...-.|...||..|+..-+.. +. -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666655333 344444578899999999865543 12 35888864
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.24 E-value=2.6 Score=32.09 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=26.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHH
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
+..|.+|...|.--..--....||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999998755444444589999999997643
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.20 E-value=2.4 Score=31.97 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=25.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHH
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDP 121 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 121 (169)
+..|.+|...|.--..--....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999875443334458999999999654
No 131
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.12 E-value=2.6 Score=21.70 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=20.2
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhh
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRAC 118 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 118 (169)
+.|+.|-..+...+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 47999988887766664 4567899888
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=66.95 E-value=3.6 Score=26.65 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.1
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHH
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPW 122 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 122 (169)
+...|.+|...|..-..--....||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 345899999998755433344489999999997653
No 133
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.13 E-value=1.4 Score=27.88 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=30.2
Q ss_pred ccccccccccccccCceeeEcC--CCCCcchHhhHHHHHhc--------CCCCCCccCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLR--NCKHIFHRACLDPWMDH--------DQKTCPLCRTP 136 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~--------~~~~CP~Cr~~ 136 (169)
....| ||......+ .....- .|...||..|+.---.. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44578 898874444 333333 58889999998632110 24569999654
No 134
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.47 E-value=1.3 Score=36.57 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc------CCCCCCccCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH------DQKTCPLCRTP 136 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~~CP~Cr~~ 136 (169)
.....|.+|...|..-..-.....||++||..|....+.. ....|-.|-..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 3345899999998644332333489999999998765522 12347777443
No 135
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.28 E-value=2.8 Score=38.75 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=42.2
Q ss_pred CccccccccccccccCceeeEcCCCC-CcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCK-HIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
.+...|+|-++-+.++..+ +-| +.|-+.+|.+|+.. +.+||.=|.++...+
T Consensus 889 P~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccc
Confidence 4556799999999988666 777 58999999999986 779999888886543
No 136
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=60.00 E-value=1.2 Score=25.94 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=25.9
Q ss_pred ccccccccCceeeEcCCCCCcchHhhHHHHHh--cCCCCCCccCC
Q 030902 93 VCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD--HDQKTCPLCRT 135 (169)
Q Consensus 93 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~~CP~Cr~ 135 (169)
||......+.-+ ..-.|...||..|+.---. ..+..||.|+.
T Consensus 8 ~C~~~~~~~~MI-~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEE-ECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEE-EcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 677665433344 3337889999999863221 12456888864
No 137
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=58.70 E-value=4.4 Score=24.92 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=30.2
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc--CCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH--DQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~ 135 (169)
.+...| ||......+.-+ ..-.|...||..|+.--... ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MI-qCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEE-ECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEE-ECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344578 998876533344 33478899999998642211 2456888854
No 138
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=57.58 E-value=8.9 Score=27.77 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=32.6
Q ss_pred CCccccccccccccccCceeeEcC--CCCCcchHhhHHHHHhc---------CCCCCCccCC
Q 030902 85 GDPPENCAVCLYEFEGGEEIRWLR--NCKHIFHRACLDPWMDH---------DQKTCPLCRT 135 (169)
Q Consensus 85 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~---------~~~~CP~Cr~ 135 (169)
+..+..|.||-+. ..+.... .|...|+..||+.++-. ..=.|=+|.-
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3556689999763 4566664 68899999999998743 1224877743
No 139
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=56.67 E-value=7.6 Score=31.84 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=31.2
Q ss_pred cccccccccccCceeeEcCCCCCc--chHhhHHHHHhc-CCCCCCccCCCCCCCh
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHI--FHRACLDPWMDH-DQKTCPLCRTPFVPDE 141 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~-~~~~CP~Cr~~~~~~~ 141 (169)
.|++=...+..+ ++.. .|.|. |-..-+-....+ +.-.||+|...+...+
T Consensus 217 ~CPlS~~ri~~P--~Rg~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 217 MCPLGKMRLTIP--CRAV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp BCTTTCSBCSSE--EEET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eCCCccceeccC--CcCC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 588777666554 5556 89997 655443333332 3346999999886544
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=56.59 E-value=3.4 Score=21.06 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.3
Q ss_pred CCCCCccCCCCCCCh
Q 030902 127 QKTCPLCRTPFVPDE 141 (169)
Q Consensus 127 ~~~CP~Cr~~~~~~~ 141 (169)
+..||+|+...++..
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 457999999887644
No 141
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=56.07 E-value=7.6 Score=31.96 Aligned_cols=50 Identities=18% Similarity=0.448 Sum_probs=31.1
Q ss_pred cccccccccccCceeeEcCCCCCc--chHhhHHHHHhc-CCCCCCccCCCCCCChH
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHI--FHRACLDPWMDH-DQKTCPLCRTPFVPDEM 142 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~-~~~~CP~Cr~~~~~~~~ 142 (169)
.|++=...+..+ ++.. .|.|. |-..-+-....+ +.-.||+|...+...++
T Consensus 251 ~CPlS~~ri~~P--vRg~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 251 QCPISYTRMKYP--SKSI-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp BCTTTSSBCSSE--EEET-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred cCCCcccccccc--CcCC-cCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 688776666554 5556 89997 554433333222 34469999988765443
No 142
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=55.67 E-value=2.5 Score=26.98 Aligned_cols=34 Identities=3% Similarity=-0.205 Sum_probs=1.0
Q ss_pred CCccCCCCCCChHHHHHHHHHHHhcCCCchhccc
Q 030902 130 CPLCRTPFVPDEMQEEFNQRLWAASGVDDLFSEY 163 (169)
Q Consensus 130 CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
||+|.+++.+.+.....-+..-+.++++..|.+.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~ 34 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNM 34 (79)
T ss_dssp --------------------------------CC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCC
Confidence 8999999987776677777888888888887654
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=53.99 E-value=6.9 Score=27.41 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=38.1
Q ss_pred Cccccccccccccc-cCceeeEcCCCCCcchHhhHHHHHhc-CCC--CCCccCCCCCCChHHHHHHHHHHHhcCCCch
Q 030902 86 DPPENCAVCLYEFE-GGEEIRWLRNCKHIFHRACLDPWMDH-DQK--TCPLCRTPFVPDEMQEEFNQRLWAASGVDDL 159 (169)
Q Consensus 86 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~--~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
.....|.+|...|. ....-.....|.|.+|..|-..-... +.. .|-+|+. ...-...+-.|.-+.++..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k-----~rel~~kSG~Wf~~~~~k~ 125 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE-----QREVWKRSGAWFFKGFPKQ 125 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH-----HHHHHHHTSHHHHTSCCCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH-----HHHHHHhhhHHHHhcCccc
Confidence 34568999999983 22223444488899998885432110 011 2666644 2222333555666666544
No 144
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.77 E-value=3.8 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.964 Sum_probs=9.4
Q ss_pred HHhcCCCCCCccCCCCC
Q 030902 122 WMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 122 wl~~~~~~CP~Cr~~~~ 138 (169)
|+..+.+.||.|+.++.
T Consensus 1 wi~~~~k~CP~C~~~Ie 17 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIE 17 (60)
T ss_dssp CCCCCCCCCTTTCCCCS
T ss_pred CccccceECcCCCCeeE
Confidence 33333456777766664
No 145
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.23 E-value=8.3 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=29.6
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
...|+.|-+.+..++.+. .-+..||..| ..|-.|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCC---------CCCCCCCCccCCC
Confidence 458999999988666554 3467888755 4788888887643
No 146
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.61 E-value=5.4 Score=25.74 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=33.3
Q ss_pred cccccccccccccc-CceeeEcCCCCCcchHhhHHHHHh-----c--CCCCCCccCCC
Q 030902 87 PPENCAVCLYEFEG-GEEIRWLRNCKHIFHRACLDPWMD-----H--DQKTCPLCRTP 136 (169)
Q Consensus 87 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~-----~--~~~~CP~Cr~~ 136 (169)
.+..|.||...-.. +..+...-.|...||..|+..-+. . +.-.|+.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 34589999876432 345555558999999999886443 1 23359988553
No 147
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.58 E-value=2.3 Score=22.75 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=5.2
Q ss_pred ccccccccccc
Q 030902 90 NCAVCLYEFEG 100 (169)
Q Consensus 90 ~C~ICl~~~~~ 100 (169)
.|++|+.++..
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 45555544443
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.04 E-value=12 Score=23.27 Aligned_cols=43 Identities=28% Similarity=0.557 Sum_probs=29.4
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
....|..|.+.+...+.+. .-+..||..| ..|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~C---------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSC---------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTT---------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCc---------CEEcCCCCCcCCCc
Confidence 3458999999887655553 3467788866 36778877775543
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.47 E-value=17 Score=21.52 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=27.5
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|.+.+...+.+.. .-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCccc---------CeECCCCCcCCC
Confidence 3479999998876433321 3567888755 368888777754
No 150
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.12 E-value=24 Score=22.19 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=26.3
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|-+.+...+.+. .-+..||..| ..|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC---------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT---------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC---------CeeCCCCCCCCC
Confidence 447888888887655543 4567788766 256667666644
No 151
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.91 E-value=14 Score=21.92 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=27.3
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
..|+.|.+.+...+.+.. .-+..||..| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETC---------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTT---------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccC---------CcccccCCccCCC
Confidence 479999998876543322 2456788755 3688888777643
No 152
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.39 E-value=5.9 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.548 Sum_probs=23.5
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
..|++|..+++..........|...| . ....||-|..++.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~-~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFI---------E-MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------E-EEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccchh---------h-ccccCcchhhHHH
Confidence 48999998876433332222444333 1 1446999988763
No 153
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.10 E-value=15 Score=22.18 Aligned_cols=42 Identities=24% Similarity=0.541 Sum_probs=27.6
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
....|+.|.+.+...+.+.. .-+..||..| ..|-.|+.++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE--ETTEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEE--eCccEecccc---------CeECCCCCCCCC
Confidence 35589999999875444322 2466788755 367788777754
No 154
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.90 E-value=19 Score=21.23 Aligned_cols=39 Identities=21% Similarity=0.590 Sum_probs=26.2
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|.+.+... .+. .-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GVT---YREQPWHKEC---------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS-EEE---SSSSEEETTT---------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccc-eEE---ECccccCCCC---------CccCCCCCcCCc
Confidence 34788998888643 232 4567888755 367788777753
No 155
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.36 E-value=14 Score=30.55 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=31.5
Q ss_pred CccccccccccccccCceeeEcC--CCCCcchHhhHHHHHhc---------CCCCCCccCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLR--NCKHIFHRACLDPWMDH---------DQKTCPLCRT 135 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~---------~~~~CP~Cr~ 135 (169)
..+..|.+|-+. ..+.... .|...||..||+.++-. ..=.|=+|.-
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 445678888653 3455554 78899999999998822 1235888854
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.11 E-value=21 Score=21.78 Aligned_cols=42 Identities=19% Similarity=0.483 Sum_probs=29.1
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
...|+.|.+.+..++.+.. .-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc---------CchhhCCCccCCC
Confidence 3589999999886654332 3567888755 3688888877543
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.86 E-value=23 Score=21.01 Aligned_cols=41 Identities=24% Similarity=0.522 Sum_probs=27.4
Q ss_pred ccccccccccccc--CceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEG--GEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|-+.+.. .+.+.. .-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C---------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDC---------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTT---------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCccc---------CEeccCCCcCCC
Confidence 3579999998875 222222 3577888765 378888877754
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=44.60 E-value=12 Score=22.19 Aligned_cols=42 Identities=24% Similarity=0.583 Sum_probs=28.7
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
....|+.|.+.+...+.+.. .-+..||..|. .|-.|..++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCC
Confidence 34589999999887665432 24567887662 67788777654
No 159
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.19 E-value=23 Score=21.03 Aligned_cols=39 Identities=23% Similarity=0.603 Sum_probs=24.1
Q ss_pred cccccccccccccCc-eeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 88 PENCAVCLYEFEGGE-EIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
...|..|.+.+...+ .+. .-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~---a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV---ALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE---CSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE---ECCCeEcccC---------CcccccCCcCC
Confidence 347888887776533 232 3456777755 36777777764
No 160
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.53 E-value=12 Score=23.27 Aligned_cols=40 Identities=25% Similarity=0.584 Sum_probs=28.3
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
....|..|-+.+..++.+.. -+..||..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc---------CCcCcCCCCcC
Confidence 34589999998876665543 456788755 47888887775
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.69 E-value=36 Score=21.17 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=28.2
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
....|..|.+.+.. ..+. .-+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTT---------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccC---------CEecCCCCCCCC
Confidence 34589999998875 2332 4668898866 368888887754
No 162
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=42.58 E-value=15 Score=31.19 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=31.1
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhc----CCCCCCccCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDH----DQKTCPLCRT 135 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~~CP~Cr~ 135 (169)
....| +|......+......-.|...||..|+.---.. .+..||.|+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 34456 998877544444444479999999998532211 2356999964
No 163
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.37 E-value=4.8 Score=27.12 Aligned_cols=24 Identities=21% Similarity=0.840 Sum_probs=15.3
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 109 NCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 109 ~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
.||+.|. +. +. ....||.|++.-.
T Consensus 72 ~CG~~F~----~~-~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK----AE-IN-IPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC----CC-SS-CCSSCSSSCCCCB
T ss_pred hCcCeec----cc-CC-CCCCCcCCCCCcc
Confidence 7999881 11 11 2467999988653
No 164
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.54 E-value=17 Score=26.04 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=38.2
Q ss_pred Cccccccccccccc--cCceeeEcCCCCCcchHhhHHHHHhcC-CCCCCccCCCCCCChHHHHHHHHHHHhcCCCchhc
Q 030902 86 DPPENCAVCLYEFE--GGEEIRWLRNCKHIFHRACLDPWMDHD-QKTCPLCRTPFVPDEMQEEFNQRLWAASGVDDLFS 161 (169)
Q Consensus 86 ~~~~~C~ICl~~~~--~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
..+..|.+|...|. .+.... ...|.|.+|..|-. |.... .-.|-+|+.. ..-...+-.|.-+.+...|+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~-C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~-----rel~~kSGeWf~~~~~~rfk 137 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQ-CLECSLFVCKSCSH-AHPEEQGWLCDPCHLA-----RVVKIGSLEWYYQHVRARFK 137 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEE-CTTTCCEECGGGEE-CCSSSSSCEEHHHHHH-----HHHHHHHCHHHHHHHHTTSS
T ss_pred CCCccchhhcCccccccCCCCc-CCCCCchhhccccc-ccCCCCcEeeHHHHHH-----HHHHHhccHHHHHHHHhhhc
Confidence 35678999999874 233333 33899999999963 32211 1127667432 11222344555555554444
No 165
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.37 E-value=14 Score=22.41 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.3
Q ss_pred ccccccccccc
Q 030902 90 NCAVCLYEFEG 100 (169)
Q Consensus 90 ~C~ICl~~~~~ 100 (169)
.|..|...+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 45555554443
No 166
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.17 E-value=25 Score=20.45 Aligned_cols=39 Identities=23% Similarity=0.539 Sum_probs=27.3
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|.+.+. +..+. .-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCc---------CEECCCCCCCCC
Confidence 357999999887 43332 4567888755 478888887754
No 167
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=39.70 E-value=9.9 Score=18.86 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=9.7
Q ss_pred CCCccCCCCCCChHH
Q 030902 129 TCPLCRTPFVPDEMQ 143 (169)
Q Consensus 129 ~CP~Cr~~~~~~~~~ 143 (169)
.||+|...++..+..
T Consensus 8 qcpvcqq~mpaahin 22 (29)
T 3vhs_A 8 QCPVCQQMMPAAHIN 22 (29)
T ss_dssp ECTTTCCEEEGGGHH
T ss_pred eChHHHHhCcHHHHH
Confidence 588887766555443
No 168
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=39.12 E-value=5 Score=33.86 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=30.6
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHh----cCCCCCCccCCCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----HDQKTCPLCRTPF 137 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~ 137 (169)
...+|......+......-.|...||..|+.---. ..+..||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 34489887654444444447889999999852111 1246799996643
No 169
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.04 E-value=12 Score=25.03 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=11.2
Q ss_pred cchHhhHHHHHhc
Q 030902 113 IFHRACLDPWMDH 125 (169)
Q Consensus 113 ~fh~~Ci~~wl~~ 125 (169)
-||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 170
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.98 E-value=12 Score=24.98 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=11.2
Q ss_pred cchHhhHHHHHhc
Q 030902 113 IFHRACLDPWMDH 125 (169)
Q Consensus 113 ~fh~~Ci~~wl~~ 125 (169)
-||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 171
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.50 E-value=13 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=8.2
Q ss_pred cccccccccccCce
Q 030902 90 NCAVCLYEFEGGEE 103 (169)
Q Consensus 90 ~C~ICl~~~~~~~~ 103 (169)
.|+.|..++.....
T Consensus 4 ~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 4 TCPVCHHALERNGD 17 (81)
T ss_dssp CCSSSCSCCEECSS
T ss_pred CCCCCCCccccCCC
Confidence 56777666654433
No 172
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.79 E-value=22 Score=20.95 Aligned_cols=40 Identities=23% Similarity=0.501 Sum_probs=26.1
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
...|..|-+.+.. ..+. .-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPEC---------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTT---------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccC---------CEeCCCCCcCCCC
Confidence 4578889888763 3333 3456788755 3677887777543
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=36.28 E-value=30 Score=21.23 Aligned_cols=47 Identities=28% Similarity=0.584 Sum_probs=30.1
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHh----cCCCCCCccCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMD----HDQKTCPLCRT 135 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~ 135 (169)
...| ||...+..+......-.|...||..|+.---. .....||.|+.
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3355 89887654444444447889999999863221 12456999964
No 174
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.17 E-value=47 Score=20.22 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=28.7
Q ss_pred CccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPD 140 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 140 (169)
.....|+.|-+.+. +..+. .-+..||..| .+|-.|+.++...
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLI---FKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCC---CSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred cCCCCCccCCCEec-ceEEE---ECcceeCCCC---------CEeCCCCCccCCC
Confidence 34568999999887 33332 4567788755 4788888887643
No 175
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.04 E-value=24 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=27.7
Q ss_pred ccccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 87 PPENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 87 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
....|+.|-+.+. +..+. .-+..||..| ..|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV---ALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE---ETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE---ECCccccccC---------CccCCCCCCCCC
Confidence 3458999999885 33333 3567888755 478888887764
No 176
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.95 E-value=29 Score=20.91 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=25.4
Q ss_pred cccccccccccc--CceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEG--GEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|-+.+.. ...+.. .-+..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C---------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSEC---------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG---------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCccc---------CChhhCCCcCCC
Confidence 478899888774 222222 3567788866 367777777653
No 177
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=34.34 E-value=12 Score=22.72 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=27.4
Q ss_pred cccccccccccccCceeeEc-CCCCCcchHhhHHHHH---hc----CCCCCCccCC
Q 030902 88 PENCAVCLYEFEGGEEIRWL-RNCKHIFHRACLDPWM---DH----DQKTCPLCRT 135 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl---~~----~~~~CP~Cr~ 135 (169)
...| ||......+..+.-- ..|...||..|+.--- .. .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 897766656544322 1377799999974211 00 1356999963
No 178
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=24 Score=20.71 Aligned_cols=38 Identities=21% Similarity=0.542 Sum_probs=23.2
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
...|+.|.+.+... .+. .-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C---------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSG-GIT---YQDQPWHADC---------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTT-CEE---ETTEEECTTT---------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcc-eEE---ECccccccCc---------CEECCCCCCCC
Confidence 34788888777543 332 3456677654 35777777664
No 179
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.49 E-value=24 Score=23.74 Aligned_cols=23 Identities=22% Similarity=0.650 Sum_probs=15.7
Q ss_pred CCCCCcchHhhHHHHHhcCCC-CCCccCCCC
Q 030902 108 RNCKHIFHRACLDPWMDHDQK-TCPLCRTPF 137 (169)
Q Consensus 108 ~~C~H~fh~~Ci~~wl~~~~~-~CP~Cr~~~ 137 (169)
..|||.|-.+ .... .||.|.++.
T Consensus 77 ~~CG~~~e~~-------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 77 KDCSHVFKPN-------ALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSSCEECSC-------CSTTCCCSSSSSCC
T ss_pred CCCCCEEeCC-------CCCCCcCccccCCC
Confidence 3788887651 2356 799998763
No 180
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.77 E-value=7.4 Score=25.86 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=9.6
Q ss_pred CCCCCccCCCCCC
Q 030902 127 QKTCPLCRTPFVP 139 (169)
Q Consensus 127 ~~~CP~Cr~~~~~ 139 (169)
...||+|.+++.+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3469999888765
No 181
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.77 E-value=24 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=14.4
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHH
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWM 123 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 123 (169)
.|..|...+..++.... .=+..||..|..+.+
T Consensus 38 ~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 38 KCAACQKHFSVGDRYLL--INSDIVCEQDIYEWT 69 (123)
T ss_dssp BCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHH
T ss_pred ccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHh
Confidence 45555555533332221 234455555555544
No 182
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=40 Score=20.43 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=24.3
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
..|+.|.+.+. +..+. .-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC---------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS---------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc---------CCccCCCCccC
Confidence 37888888877 33332 4567788754 36777877774
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.25 E-value=31 Score=21.01 Aligned_cols=38 Identities=34% Similarity=0.791 Sum_probs=26.0
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|.+.+. +..+. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C---------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC---------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT---------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC---------CccccCCCCCCC
Confidence 48999999887 33333 3567788755 367788777754
No 184
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.13 E-value=9.3 Score=27.26 Aligned_cols=43 Identities=12% Similarity=0.304 Sum_probs=19.6
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
.|..|...+....-. .=+..||..|..+-+ ...|..|...+.+
T Consensus 35 ~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 35 KCSDCHVPLAERCFS----RGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp BCTTTCCBCCSCCEE----SSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred ccCCCCCcCCCCCcc----cCCeeeecccccccc---cccccccccccCC
Confidence 455555555433211 234455555544433 2245555555543
No 185
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.84 E-value=4.7 Score=25.48 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=12.7
Q ss_pred CCCCcchHhhHHHH
Q 030902 109 NCKHIFHRACLDPW 122 (169)
Q Consensus 109 ~C~H~fh~~Ci~~w 122 (169)
.|++.|+..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998887
No 186
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.67 E-value=48 Score=19.80 Aligned_cols=37 Identities=22% Similarity=0.586 Sum_probs=23.4
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
..|+-|-+.+.. ..+. .-+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~v~---a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLE---AGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCBC---CSSCCBCTTT---------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeEE---eCCCCCCCCc---------CEeCCCCCCCC
Confidence 468888877764 2222 4567787755 36777777665
No 187
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.53 E-value=28 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=27.8
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 138 (169)
...|+.|-+.+.....+. .-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc---------cCcCcCCCccc
Confidence 458999999887654343 3567888866 37888877764
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.37 E-value=37 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=15.6
Q ss_pred cccccccccccCceeeEcCCCCCcchHhh
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRAC 118 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 118 (169)
.|..|.+.+...+.+.. .-++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC
Confidence 57777777665443322 2456677666
No 189
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=27.99 E-value=46 Score=19.99 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=29.0
Q ss_pred cccccccccccccCceeeEcCCCCCcchHh-hHHHHH
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRA-CLDPWM 123 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~-Ci~~wl 123 (169)
...|+-|...+..+.....-....|.||.. ||...-
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 458999999999888777666888999876 888754
No 190
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.90 E-value=40 Score=22.49 Aligned_cols=37 Identities=24% Similarity=0.517 Sum_probs=20.0
Q ss_pred cccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCC
Q 030902 90 NCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPF 137 (169)
Q Consensus 90 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 137 (169)
.|..|.+.+...+.+.. .-+..||..| ..|-.|..++
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C---------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLEC---------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGG---------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe--eCCceECccC---------cccCCCCCCC
Confidence 56666666654332222 2455666655 3566666665
No 191
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.41 E-value=51 Score=21.59 Aligned_cols=13 Identities=8% Similarity=-0.256 Sum_probs=6.9
Q ss_pred CCcchHhhHHHHH
Q 030902 111 KHIFHRACLDPWM 123 (169)
Q Consensus 111 ~H~fh~~Ci~~wl 123 (169)
+..|+..|..+-+
T Consensus 52 g~~yC~~~y~~~f 64 (114)
T 1j2o_A 52 GRKLCRRDYLRLG 64 (114)
T ss_dssp TBCCCHHHHHHHH
T ss_pred CeeechHHHHHHh
Confidence 4455555555544
No 192
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=45 Score=20.21 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=26.0
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|.+.+.....+.. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC---------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT---------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC---------CeecCCCCccCC
Confidence 479999998874333321 2467788755 367778777754
No 193
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=48 Score=19.95 Aligned_cols=38 Identities=29% Similarity=0.689 Sum_probs=24.9
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|-+.+... .+. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHREC---------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTT---------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhh---------CCcccCCCcCCC
Confidence 4788888887653 232 4567788755 367778777743
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.13 E-value=18 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=10.9
Q ss_pred HHhcCCCCCCccCCCCC
Q 030902 122 WMDHDQKTCPLCRTPFV 138 (169)
Q Consensus 122 wl~~~~~~CP~Cr~~~~ 138 (169)
|+.. --.||.|+.++.
T Consensus 4 ~LLe-iL~CP~ck~~L~ 19 (69)
T 2pk7_A 4 KLLD-ILACPICKGPLK 19 (69)
T ss_dssp CGGG-TCCCTTTCCCCE
T ss_pred HHHh-heeCCCCCCcCe
Confidence 4443 557999988775
No 195
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=25.12 E-value=29 Score=22.21 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=20.4
Q ss_pred ccccccccccccCceeeEc-CCCCCcchHhhHHH
Q 030902 89 ENCAVCLYEFEGGEEIRWL-RNCKHIFHRACLDP 121 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~ 121 (169)
..|.||... ..+..+.-- ..|.-.||..|...
T Consensus 18 l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 479999653 124333211 25778999999876
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=48 Score=19.74 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=26.8
Q ss_pred cccccccccccc---C-ceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEG---G-EEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~---~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|.+.+.. . ..+. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA---YEGQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE---ETTEEEETTT---------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE---ECcceeCccc---------CEehhcCCCCCC
Confidence 479999998874 2 3332 2467788765 378888888754
No 197
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.29 E-value=18 Score=22.11 Aligned_cols=40 Identities=28% Similarity=0.578 Sum_probs=24.8
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|.+.+..++.+. .-+..||..| ..|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCC---------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSS---------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE---eCCccccccc---------CccCCCCCCCCC
Confidence 347888888876665543 3456777655 256667666543
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=38 Score=20.40 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=24.9
Q ss_pred ccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|.+.+... .+. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YLS---AMDTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSS-CEE---ETTEEECTTT---------CBCSSSCCBSCS
T ss_pred CccccCCCeecce-eEE---ECCCeEecCc---------CChhhCCCCCCC
Confidence 4788888887653 332 3456777755 367788777754
No 199
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.12 E-value=30 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=9.1
Q ss_pred ccccccccccccC
Q 030902 89 ENCAVCLYEFEGG 101 (169)
Q Consensus 89 ~~C~ICl~~~~~~ 101 (169)
-.|++|...++-.
T Consensus 11 L~CP~c~~~L~~~ 23 (56)
T 2kpi_A 11 LACPACHAPLEER 23 (56)
T ss_dssp CCCSSSCSCEEEE
T ss_pred eeCCCCCCcceec
Confidence 3788898876533
No 200
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=24.01 E-value=48 Score=21.94 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=28.2
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
--.|..|...+....-. . .=+..|+..|..+.+ ...|..|..++.+
T Consensus 30 CF~C~~C~~~L~~~~f~--~-~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYV--M-VNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEE--E-ETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEE--e-ECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 34677777776543211 1 345667777766532 4478888888765
No 201
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.01 E-value=43 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=15.8
Q ss_pred eeEcCCCCCcchHhhHHHHHhcCCCCCCccCCC
Q 030902 104 IRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTP 136 (169)
Q Consensus 104 ~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 136 (169)
....+.|||++-. . ....||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~-~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------E-APEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------C-CCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------C-CCCCCCCCCCC
Confidence 3445578887741 1 24489999764
No 202
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=53 Score=19.97 Aligned_cols=45 Identities=24% Similarity=0.467 Sum_probs=25.0
Q ss_pred cccccccccccccCceeeEcCCCC---CcchHhhHHHHHh-cCCCCCCccCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCK---HIFHRACLDPWMD-HDQKTCPLCRT 135 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl~-~~~~~CP~Cr~ 135 (169)
...| +|... ..+..+.-- .|. ..||..|+.---. .....||.|+.
T Consensus 6 ~~yC-~C~~~-~~g~MI~CD-~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 6 SGYC-ICNQV-SYGEMVGCD-NQDCPIEWFHYGCVGLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCS-TTSCC-CCSSEECCS-CTTCSCCCEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CeEE-EcCCC-CCCCEeEeC-CCCCCccCCcccccccCcCCCCCEECCCCCc
Confidence 4456 68776 344444222 442 6899999873111 12345888854
No 203
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.35 E-value=37 Score=20.58 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=25.4
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPF 137 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 137 (169)
...|..|.+.+... .+. .-+..||..| ..|-.|+..+
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C---------F~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPEC---------YVCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTT---------TSCSSSCCCH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCc---------CeeCCCCCCC
Confidence 45899999888753 332 4567888766 3677777665
No 204
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.83 E-value=1.2e+02 Score=17.64 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=14.3
Q ss_pred CCCCccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 030902 1 MGFPVGYTEVFLPKFFVHTLSFLGFIRNIIICLF 34 (169)
Q Consensus 1 mg~p~~~~~~~lp~~~~~~l~~l~~l~~i~~~~l 34 (169)
||-|. ...+..++++++.-+.++..++.++.
T Consensus 1 ~~~~~---~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 1 MGLPG---RVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCC---CCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc---cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764 22333444444444444444444443
No 205
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.91 E-value=8.2 Score=27.90 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=15.0
Q ss_pred CcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 112 HIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 112 H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
..||..|..+- -...|..|...+.+.+
T Consensus 107 ~~yC~~~y~~~---f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 107 SVYCKDDFFKR---FGTKCAACQLGIPPTQ 133 (182)
T ss_dssp EEECHHHHHHT---TSCCCTTTCCCCCSSC
T ss_pred EeeecCccccc---cccccccCCCccCCCc
Confidence 34555554432 2346888887776543
No 206
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.77 E-value=47 Score=20.10 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=25.3
Q ss_pred cccccccccccccCceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCC
Q 030902 88 PENCAVCLYEFEGGEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 88 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
...|+.|.+.+.. ..+. .-+..||..| .+|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILR---AMGKAYHPGC---------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEE---ETTEEECTTT---------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc-eeEE---ECCccccHHh---------cCcccCCCccCC
Confidence 4578888888763 2332 3456787755 367888777753
No 207
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.16 E-value=28 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=17.8
Q ss_pred CCCCcchHhhHH------HHHhc----CCCCCCccCC
Q 030902 109 NCKHIFHRACLD------PWMDH----DQKTCPLCRT 135 (169)
Q Consensus 109 ~C~H~fh~~Ci~------~wl~~----~~~~CP~Cr~ 135 (169)
.|++.||..|.. +-+.. ....||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 699999999952 12221 1367999964
No 208
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.98 E-value=24 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=12.6
Q ss_pred CCCCccCCCCCCChHHH
Q 030902 128 KTCPLCRTPFVPDEMQE 144 (169)
Q Consensus 128 ~~CP~Cr~~~~~~~~~~ 144 (169)
..||.|+..++.++..+
T Consensus 10 ~~C~~C~~~i~~~~~~E 26 (39)
T 2i5o_A 10 VPCEKCGSLVPVWDMPE 26 (39)
T ss_dssp EECTTTCCEEEGGGHHH
T ss_pred cccccccCcCCcccccc
Confidence 46999999887766544
No 209
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.85 E-value=17 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=12.1
Q ss_pred HHHhcCCCCCCccCCCCCC
Q 030902 121 PWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 121 ~wl~~~~~~CP~Cr~~~~~ 139 (169)
.|+.. --.||.|+.++..
T Consensus 5 ~~LLe-iL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLE-VLACPKDKGPLRY 22 (67)
T ss_dssp GGGTC-CCBCTTTCCBCEE
T ss_pred HHHHH-HhCCCCCCCcCeE
Confidence 44543 5679999988753
No 210
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.79 E-value=57 Score=18.87 Aligned_cols=39 Identities=15% Similarity=0.450 Sum_probs=26.5
Q ss_pred ccccccccccccC-ceeeEcCCCCCcch--HhhHHHHHhcCCCCCCccCCCCCC
Q 030902 89 ENCAVCLYEFEGG-EEIRWLRNCKHIFH--RACLDPWMDHDQKTCPLCRTPFVP 139 (169)
Q Consensus 89 ~~C~ICl~~~~~~-~~~~~l~~C~H~fh--~~Ci~~wl~~~~~~CP~Cr~~~~~ 139 (169)
..|+.|-+.+..+ ..+. .-+..|| ..| .+|-.|+.++..
T Consensus 3 ~~C~~C~~~I~~~~~~v~---a~~~~wH~~~~C---------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT---YNNFSWHASTEC---------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEE---ETTEEEETTTTT---------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEE---ECCCccCCCCCC---------EECCCCCCcCCC
Confidence 3688998888764 3333 3467888 755 377888877754
No 211
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.28 E-value=59 Score=21.53 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=32.6
Q ss_pred cccccccccccc-CceeeEcCCCCCcchHhhHHHHHhcCCCCCCccCCCCCCCh
Q 030902 89 ENCAVCLYEFEG-GEEIRWLRNCKHIFHRACLDPWMDHDQKTCPLCRTPFVPDE 141 (169)
Q Consensus 89 ~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 141 (169)
-.|..|...+.. +.... . .=+..||..|..+.+.. +..|-.|..++....
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 468888877752 21111 1 35667888888876642 447999998887644
No 212
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.01 E-value=31 Score=22.32 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=26.0
Q ss_pred CccccccccccccccCceeeEcCCCC---CcchHhhHHHHHhc---CCCCCCc-cC
Q 030902 86 DPPENCAVCLYEFEGGEEIRWLRNCK---HIFHRACLDPWMDH---DQKTCPL-CR 134 (169)
Q Consensus 86 ~~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl~~---~~~~CP~-Cr 134 (169)
.+...| ||.... .++.+ ..-.|. ..||..|+. +.. ++-.||. |+
T Consensus 24 ~~~~yC-iC~~~~-~g~MI-~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGPMV-ACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCC-SSSEE-CCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCC-CCCEE-EecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 344567 998753 24433 222544 689999986 222 2445999 85
Done!