BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030903
MLAISVSKFTNPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFS
QSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHD
WHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP

High Scoring Gene Products

Symbol, full name Information P value
AT5G52960 protein from Arabidopsis thaliana 6.0e-48

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030903
        (169 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168352 - symbol:AT5G52960 "AT5G52960" species...   501  6.0e-48   1


>TAIR|locus:2168352 [details] [associations]
            symbol:AT5G52960 "AT5G52960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009073 "aromatic amino acid family biosynthetic
            process" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AB018116 UniGene:At.28246
            UniGene:At.70496 EMBL:AY085297 EMBL:BT003694 EMBL:AK117117
            IPI:IPI00543000 RefSeq:NP_200108.1 IntAct:Q9LVV6 STRING:Q9LVV6
            PRIDE:Q9LVV6 EnsemblPlants:AT5G52960.1 GeneID:835373
            KEGG:ath:AT5G52960 TAIR:At5g52960 eggNOG:NOG43761
            HOGENOM:HOG000241596 InParanoid:Q9LVV6 OMA:KDDRAVW PhylomeDB:Q9LVV6
            ProtClustDB:CLSN2686145 Genevestigator:Q9LVV6 InterPro:IPR021489
            Pfam:PF11341 Uniprot:Q9LVV6
        Length = 170

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/118 (78%), Positives = 106/118 (89%)

Query:    52 KKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDR 111
             +K LTL  S+S +AEE +  TEDEWL+KLPEKNKPLYSHSLPCIEAWLR LGF+QS DDR
Sbjct:    54 RKPLTLVSSKSSDAEE-VSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDDR 112

Query:   112 AVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRFSYALSREDIENAILGGP 169
             AVWL++K DWHAQLSLD+TDL IRY+K+GPGNLE+D+ERRFSYALSRED ENAILGGP
Sbjct:   113 AVWLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLERDMERRFSYALSREDTENAILGGP 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       169   0.00082  108 3  11 22  0.42    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  174 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.00u 0.08s 20.08t   Elapsed:  00:00:07
  Total cpu time:  20.00u 0.08s 20.08t   Elapsed:  00:00:07
  Start:  Fri May 10 03:01:11 2013   End:  Fri May 10 03:01:18 2013

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