BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030903
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVW 114
LP ++ R++G ++SSD A++
Sbjct: 145 LPQLKDSFRNVGLNRSSDLVALY 167
>pdb|3L9T|A Chain A, The Crystal Structure Of Smu.31 From Streptococcus Mutans
Ua159
Length = 240
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 62 SFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFH---QSSDDRAVW---- 114
++ +E L DE+ +K+ Y +LP I+ WL+S H +++ +W
Sbjct: 117 NWRVQEVLAKAFDEFCKKIE------YKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP 170
Query: 115 -LVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIERRF 152
E + + D+ + Y++ GN +DI ++F
Sbjct: 171 YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 145 LPQLKDSFRNVGLNRSSD--LVALSGGHSFGKNQCRFIMDRLY 185
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 91 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 145
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 146 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 186
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 91 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 145
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 146 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 186
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 145 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 185
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 91 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 145
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 146 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 186
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 145 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 185
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 145 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 185
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 91 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 145
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNG 140
LP ++ R++G ++SSD V L H + + D + G
Sbjct: 146 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRSIMDRLYNFSNTG 192
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 32 ACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHS 91
ACP + SC +T + ++++TLA S+ + +L+ L N P +
Sbjct: 90 ACP----RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLD-LANANLPAPFFT 144
Query: 92 LPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHA-QLSLDMTDLY 133
LP ++ R++G ++SSD V L H + Q M LY
Sbjct: 145 LPQLKDSFRNVGLNRSSD--LVALSGGHTFGKNQCRFIMDRLY 185
>pdb|2FV0|A Chain A, Ugl_d88nDGLCA-Glc-Rha-Glc
pdb|2FV0|B Chain B, Ugl_d88nDGLCA-Glc-Rha-Glc
pdb|2FV1|A Chain A, Ugl_d88nDGLCA-Glcnac
pdb|2FV1|B Chain B, Ugl_d88nDGLCA-Glcnac
pdb|2AHF|A Chain A, Unsaturated Glucuronyl Hydrolase Mutant D88n
pdb|2AHF|B Chain B, Unsaturated Glucuronyl Hydrolase Mutant D88n
pdb|2AHG|A Chain A, Unsaturated Glucuronyl Hydrolase Mutant D88n With
Dglca-Galnac
pdb|2AHG|B Chain B, Unsaturated Glucuronyl Hydrolase Mutant D88n With
Dglca-Galnac
Length = 377
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 101 SLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLE 145
++GF S +A W+VEK + +L+LD D+ +R + G ++
Sbjct: 88 NIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQ 132
>pdb|1VD5|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase,
Responsible For The Degradation Of Glycosaminoglycan,
From Bacillus Sp. Gl1 At 1.8 A Resolution
pdb|2FUZ|A Chain A, Ugl Hexagonal Crystal Structure Without Glycine And Dtt
Molecules
pdb|2D5J|A Chain A, Unsaturated Glucuronyl Hydrolase Triggers Hydration Of
Vinyl Ether Group But Not Of Glycosidic Bond
pdb|2D5J|B Chain B, Unsaturated Glucuronyl Hydrolase Triggers Hydration Of
Vinyl Ether Group But Not Of Glycosidic Bond
Length = 377
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 102 LGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLE 145
+GF S +A W+VEK + +L+LD D+ +R + G ++
Sbjct: 89 IGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQ 132
>pdb|2REE|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REE|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REF|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
pdb|2REF|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
Length = 224
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 91 SLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDLYIRYLKNGPGNLEKDIER 150
SL C E +L + D R + +E W L +D ++Y R K G ++E
Sbjct: 4 SLNCFENNYYNLRHPKIEDLRDLIALETLCWSENLQVDNEEIYRRIFKIPQGQFILELED 63
Query: 151 RFSYALSREDIEN 163
+ A+ + I+N
Sbjct: 64 KIVGAIYSQRIDN 76
>pdb|1BT1|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)
In The Native Cu(Ii)-Cu(Ii) State
pdb|1BT1|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)
In The Native Cu(Ii)-Cu(Ii) State
pdb|1BT2|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)
In The Reduced Cu(I)-Cu(I) State
pdb|1BT2|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)
In The Reduced Cu(I)-Cu(I) State
pdb|1BT3|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)
In The Native Cu(Ii)-Cu(Ii) State
pdb|1BUG|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
pdb|1BUG|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
Length = 345
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 20 PANTPKFSLFSPACPPIFS-----KFPSCP----HPITHSHKKTLTLAFSQSFEAEEELP 70
PA+ P ++ CPP+ S K P+ P H+ K F+++ E + LP
Sbjct: 15 PADLPPGAVVDNCCPPVASNIVDYKLPAVTTMKVRPAAHTMDKDAIAKFAKAVELMKALP 74
Query: 71 STE 73
+ +
Sbjct: 75 ADD 77
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 40 FPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEK-NKPLYSH 90
FP+CP + SH + T+A S ++ W KL E+ + P YSH
Sbjct: 532 FPTCPPGMNASHYQGSTIAVDAS--------GSQIVWSTKLDEQASGPWYSH 575
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 40 FPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEKLPEK-NKPLYSH 90
FP+CP + SH + T+A S ++ W KL E+ + P YSH
Sbjct: 532 FPTCPPGMNASHYQGSTIAVDAS--------GSQIVWSTKLDEQASGPWYSH 575
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 48 THSHKKTLTLAFSQSFEAEEELPSTEDEWLE 78
TH KKTL F QSF+ LP + L+
Sbjct: 64 THVSKKTLNPVFDQSFDFSVSLPEVQRRTLD 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,537,285
Number of Sequences: 62578
Number of extensions: 228609
Number of successful extensions: 577
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 22
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)