BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030903
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q666S2|YGFZ_YERPS tRNA-modifying protein YgfZ OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=YPTB3174 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|A7FF28|YGFZ_YERP3 tRNA-modifying protein YgfZ OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=YpsIP31758_0872 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|B1JNT4|YGFZ_YERPY tRNA-modifying protein YgfZ OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=YPK_0875 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|A4TIB4|YGFZ_YERPP tRNA-modifying protein YgfZ OS=Yersinia pestis (strain Pestoides F)
GN=YPDSF_0617 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|Q1CF05|YGFZ_YERPN tRNA-modifying protein YgfZ OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=YPN_3098 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|A9R4L4|YGFZ_YERPG tRNA-modifying protein YgfZ OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=YpAngola_A3840 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|Q7CGT3|YGFZ_YERPE tRNA-modifying protein YgfZ OS=Yersinia pestis GN=YPO0898 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|Q1CB34|YGFZ_YERPA tRNA-modifying protein YgfZ OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=YPA_0370 PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSAEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|B2K0P7|YGFZ_YERPB tRNA-modifying protein YgfZ OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=YPTS_3305 PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 11 NPDIILSSTPANTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELP 70
PD +L + K +L IF++ PS HP+T TL L F S AE L
Sbjct: 113 QPDAVLIGVAGSQAKTAL-----AEIFTELPSTEHPVTQMGNSTL-LHF--SLPAERFLL 164
Query: 71 STEDEWLEKLPEK 83
T+ E ++L EK
Sbjct: 165 VTDTEQAQQLVEK 177
>sp|Q2GBX1|SYT_NOVAD Threonine--tRNA ligase OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=thrS PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 70 PSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEK 118
PST+D + K++P LP IEA +R + R VW E+
Sbjct: 100 PSTDDGFYYDFAPKDRPFTDEDLPAIEAEMRKIIAANKPLRREVWSREQ 148
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 22 NTPKFSLFSPACPPIFSKFPSCPHPITHSHKKTLTLAFSQSFEAEEELPSTEDEWLEK 79
N PKFS S P +F+ P P + +K T S + +A+ E E K
Sbjct: 779 NAPKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAEREKASK 836
>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1
Length = 904
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 55 LTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGF 104
+ + ++ E + L D W EK+PE+ K Y E W SLGF
Sbjct: 805 MYVVYANRTEDDILLKEELDSWAEKIPERVKVWYVVQDSIKEGWKYSLGF 854
>sp|Q0CQF3|SPB4_ASPTN ATP-dependent rRNA helicase spb4 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=spb4 PE=3 SV=1
Length = 639
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 52 KKTLTLAFSQSFEAEEELPSTEDEWLEKLPEKNKPLYSHSLPCIEAWLRSLGFHQSSDDR 111
+KT F + ST E K+ ++++ L+ +WLRS HQ+S
Sbjct: 418 RKTPVTPFPHPISISDSDASTATEAARKIIKQDRALHDRGQKAFVSWLRSYSKHQAS--- 474
Query: 112 AVWLVEKHDWHA 123
+++ V DW A
Sbjct: 475 SIFRVADLDWEA 486
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,049,415
Number of Sequences: 539616
Number of extensions: 2899725
Number of successful extensions: 7160
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 7149
Number of HSP's gapped (non-prelim): 40
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)