Query 030903
Match_columns 169
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 09:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hu9_A MERP, mercuric transpor 45.6 3.2 0.00011 31.7 -0.7 39 126-168 53-92 (130)
2 1b0x_A Protein (EPHA4 receptor 45.1 7.9 0.00027 27.0 1.3 17 91-107 25-41 (94)
3 1ow5_A Serine/threonine-protei 39.3 10 0.00035 27.6 1.1 14 93-106 16-29 (85)
4 2xet_A CAF1A usher, F1 capsule 38.0 14 0.00049 25.1 1.7 34 120-159 35-72 (89)
5 2dl0_A SAM and SH3 domain-cont 37.4 20 0.00067 25.5 2.4 25 83-107 14-38 (97)
6 2eam_A Putative 47 kDa protein 35.1 12 0.00042 25.0 0.9 16 92-107 12-27 (80)
7 3bq7_A Diacylglycerol kinase d 34.5 22 0.00076 23.8 2.1 24 84-107 4-27 (81)
8 2eao_A Ephrin type-B receptor 34.2 22 0.00075 24.9 2.1 17 91-107 21-37 (99)
9 3h8m_A Ephrin type-A receptor 33.9 20 0.00068 25.1 1.9 17 91-107 24-40 (90)
10 3kka_C Ephrin type-A receptor 33.8 15 0.00052 25.6 1.3 17 92-108 21-37 (86)
11 2qkq_A Ephrin type-B receptor 33.5 15 0.00051 24.7 1.2 17 91-107 14-30 (83)
12 2e8n_A Ephrin type-A receptor 33.5 15 0.0005 25.2 1.1 16 92-107 12-27 (88)
13 1b4f_A EPHB2; SAM domain, EPH 32.4 16 0.00055 24.5 1.2 16 92-107 11-26 (82)
14 2ga1_A Protein of unknown func 31.7 20 0.0007 26.3 1.7 29 135-166 59-87 (106)
15 3hil_A Ephrin type-A receptor 31.6 17 0.00057 25.1 1.2 18 91-108 22-39 (82)
16 1ucv_A Ephrin type-A receptor 29.9 18 0.00063 24.3 1.1 16 92-107 7-22 (81)
17 3k1r_B Usher syndrome type-1G 27.6 26 0.0009 23.6 1.6 15 94-108 4-18 (74)
18 3sei_A Caskin-1; SAM domain, p 25.9 43 0.0015 25.0 2.7 15 93-107 80-94 (149)
19 2kso_A Ephrin type-A receptor 25.8 28 0.00096 23.7 1.5 16 92-107 16-31 (82)
20 1a0r_P Phosducin, MEKA, PP33; 24.5 35 0.0012 27.3 2.0 33 90-129 212-244 (245)
21 1x40_A ARAP2; ASAP-related pro 24.3 30 0.001 23.9 1.4 14 94-107 17-30 (91)
22 2kg5_A ARF-GAP, RHO-GAP domain 22.6 35 0.0012 24.3 1.5 15 93-107 27-41 (100)
23 1v38_A SAM-domain protein sams 22.4 35 0.0012 23.0 1.4 14 93-106 13-26 (78)
24 2f3n_A SH3 and multiple ankyri 22.0 43 0.0015 22.1 1.8 16 92-107 7-22 (76)
25 3utn_X Thiosulfate sulfurtrans 21.0 64 0.0022 27.0 3.0 28 80-108 84-114 (327)
26 2lmr_A ODIN, ankyrin repeat an 20.9 39 0.0013 24.3 1.5 14 94-107 31-44 (101)
27 2gle_A Neurabin-1; SAM domain, 20.3 35 0.0012 22.1 1.0 20 87-106 4-23 (74)
No 1
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=45.56 E-value=3.2 Score=31.71 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=28.8
Q ss_pred EeeeeeeEEE-EeecCCCCCcCceeeecccCCCHHHHHHHHhcC
Q 030903 126 SLDMTDLYIR-YLKNGPGNLEKDIERRFSYALSREDIENAILGG 168 (169)
Q Consensus 126 ~Ld~edL~Vr-y~~~G~~gle~diqRsF~YsLSReDVEaAIf~G 168 (169)
.+..+||+|. |.+... .++-=-+=.+.+++||++||..|
T Consensus 53 ~f~~~~vkv~v~~K~~~----~~~~VC~C~gVT~~~I~eAv~~G 92 (130)
T 2hu9_A 53 VFRKGELKTRVGVKERE----EPKPVCYCNRVTEKMLLEAAEKF 92 (130)
T ss_dssp EEEGGGBSSCCGGGCSS----SCCEEETTTTEEHHHHHHHHHHH
T ss_pred eEEecceEEEeeccCCC----CCCEEEEccCCcHHHHHHHHHcC
Confidence 4667777765 555555 34556678899999999999876
No 2
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=45.15 E-value=7.9 Score=26.97 Aligned_cols=17 Identities=12% Similarity=0.536 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHcCCccC
Q 030903 91 SLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd 107 (169)
+.-.++.||..+|+.|=
T Consensus 25 ~~~~V~~WL~~lgL~~Y 41 (94)
T 1b0x_A 25 AVVSVGDWLQAIKMDRY 41 (94)
T ss_dssp SSCCHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHCCcHHH
Confidence 34578999999998863
No 3
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=39.31 E-value=10 Score=27.64 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCcc
Q 030903 93 PCIEAWLRSLGFHQ 106 (169)
Q Consensus 93 P~IE~WL~~LG~~q 106 (169)
+.++.||+++||.|
T Consensus 16 ~~v~~wL~si~c~q 29 (85)
T 1ow5_A 16 PFVQLFLEEIGCTQ 29 (85)
T ss_dssp CHHHHHHHHHSCTH
T ss_pred HHHHHHHHHcCChh
Confidence 38999999999987
No 4
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=38.04 E-value=14 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=22.2
Q ss_pred CceEEEEe----eeeeeEEEEeecCCCCCcCceeeecccCCCHH
Q 030903 120 DWHAQLSL----DMTDLYIRYLKNGPGNLEKDIERRFSYALSRE 159 (169)
Q Consensus 120 ~WsAeL~L----d~edL~Vry~~~G~~gle~diqRsF~YsLSRe 159 (169)
.+.-+++| +...|.|+| |.+ +..+|.+.|.|+..
T Consensus 35 g~~G~vyl~g~~~~~~L~V~w---g~~---~~~~C~~~y~l~~~ 72 (89)
T 2xet_A 35 GDNSGVYLTGLPKKSKILVKW---GRD---KNQSCSSNVVLPEK 72 (89)
T ss_dssp CTTSEEEEEEECSEEEEEEES---CSS---TTSEEEEEEECCSC
T ss_pred cCCCEEEEECCCCCCEEEEEE---CCC---CCCcEEEEEeCCCC
Confidence 34444554 256799999 432 25689999998654
No 5
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.35 E-value=20 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.4
Q ss_pred CCCCCCCCChHHHHHHHHHcCCccC
Q 030903 83 KNKPLYSHSLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 83 ~~TPLYnHsLP~IE~WL~~LG~~qd 107 (169)
..+|+-..+.-.+.+||..+|..|=
T Consensus 14 ~~~p~~~~~~~sV~eWL~~igL~qY 38 (97)
T 2dl0_A 14 CRKPVSPGCISSVSDWLISIGLPMY 38 (97)
T ss_dssp CCCCCCCSCCCSHHHHHHHHTCGGG
T ss_pred ccCCCCccccCcHHHHHHHCCCHHH
Confidence 5577777788889999999998863
No 6
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.12 E-value=12 Score=25.02 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.8
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
...+..||+++|+.|=
T Consensus 12 ~~~V~~WL~~lgL~~Y 27 (80)
T 2eam_A 12 VQTVGQWLESIGLPQY 27 (80)
T ss_dssp CCCHHHHHHHHTCGGG
T ss_pred hhHHHHHHHHCCCHHH
Confidence 3468889999998874
No 7
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=34.50 E-value=22 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHcCCccC
Q 030903 84 NKPLYSHSLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 84 ~TPLYnHsLP~IE~WL~~LG~~qd 107 (169)
..|..+=+--.+..||+++|+.|=
T Consensus 4 ~~~v~~Ws~~~V~~WL~~lgl~~Y 27 (81)
T 3bq7_A 4 TRPVHLWGTEEVAAWLEHLSLCEY 27 (81)
T ss_dssp -CCGGGCCHHHHHHHHHHTTCGGG
T ss_pred CCChhhCCHHHHHHHHHHCCCHHH
Confidence 345556667789999999998763
No 8
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.18 E-value=22 Score=24.89 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHcCCccC
Q 030903 91 SLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd 107 (169)
+...++.||+++|+.|=
T Consensus 21 ~~~~V~~WL~~lgL~~Y 37 (99)
T 2eao_A 21 AFTTVDDWLSAIKMVQY 37 (99)
T ss_dssp SCCBHHHHHHTTTCGGG
T ss_pred chHHHHHHHHHCCcHHH
Confidence 34578999999998874
No 9
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=33.85 E-value=20 Score=25.15 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHcCCccC
Q 030903 91 SLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd 107 (169)
++..++.||.++|+.|=
T Consensus 24 ~~~~V~~WL~~lgL~qY 40 (90)
T 3h8m_A 24 TFCSVGEWLQAIKMERY 40 (90)
T ss_dssp CCSSHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHCChHHH
Confidence 45789999999998764
No 10
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=33.84 E-value=15 Score=25.56 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=12.5
Q ss_pred hHHHHHHHHHcCCccCC
Q 030903 92 LPCIEAWLRSLGFHQSS 108 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd~ 108 (169)
+..+++||+++|+.|=.
T Consensus 21 ~~~V~~WL~~lgL~qY~ 37 (86)
T 3kka_C 21 FRTVSEWLESIKMQQYT 37 (86)
T ss_dssp --CHHHHHHHTTCGGGH
T ss_pred hhHHHHHHHhCCcHHHH
Confidence 45789999999987743
No 11
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=33.54 E-value=15 Score=24.75 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHcCCccC
Q 030903 91 SLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd 107 (169)
+...+..||+++|+.|=
T Consensus 14 ~~~~V~~WL~~lgL~~Y 30 (83)
T 2qkq_A 14 AFGSVGEWLRAIKMGRY 30 (83)
T ss_dssp CCSSHHHHHHHTTCGGG
T ss_pred ccchHHHHHHHCCCHHH
Confidence 35578999999998763
No 12
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.52 E-value=15 Score=25.21 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=13.1
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
...++.||+.+|+.|=
T Consensus 12 ~~~V~~WL~~lgL~~Y 27 (88)
T 2e8n_A 12 FRTVSEWLESIKMQQY 27 (88)
T ss_dssp CSSHHHHHHHTTCGGG
T ss_pred hhhHHHHHHHCCCHHH
Confidence 4578899999998874
No 13
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=32.40 E-value=16 Score=24.46 Aligned_cols=16 Identities=19% Similarity=0.601 Sum_probs=13.0
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
.-.+..||+++|+.|=
T Consensus 11 ~~~v~~WL~~lgL~~Y 26 (82)
T 1b4f_A 11 FNTVDEWLEAIKMGQY 26 (82)
T ss_dssp CSSHHHHHHHTTCGGG
T ss_pred ccHHHHHHHHCCCHHH
Confidence 4578899999998874
No 14
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=31.72 E-value=20 Score=26.32 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEeecCCCCCcCceeeecccCCCHHHHHHHHh
Q 030903 135 RYLKNGPGNLEKDIERRFSYALSREDIENAIL 166 (169)
Q Consensus 135 ry~~~G~~gle~diqRsF~YsLSReDVEaAIf 166 (169)
.|+.+|..- .++-..|| .|+++||.+|+.
T Consensus 59 ~~l~~G~s~--eeIl~~yP-~Lt~edI~aAL~ 87 (106)
T 2ga1_A 59 AYRQQGAPD--KELLANYP-GLTAEDLSAAWH 87 (106)
T ss_dssp HHHHTTCCH--HHHHHHST-TCCHHHHHHHHH
T ss_pred HHHHcCCCH--HHHHHHCC-CCCHHHHHHHHH
Confidence 455555422 44555555 699999999974
No 15
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=31.56 E-value=17 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHcCCccCC
Q 030903 91 SLPCIEAWLRSLGFHQSS 108 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd~ 108 (169)
+...++.||.++|+.|=.
T Consensus 22 ~~~~V~~WL~~lgL~qY~ 39 (82)
T 3hil_A 22 PYRTVSEWLESIRMKRYI 39 (82)
T ss_dssp CCSSHHHHHHHTTCGGGH
T ss_pred chhHHHHHHHhCCHHHHH
Confidence 346799999999987643
No 16
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=29.85 E-value=18 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.0
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
.-.++.||.++|+.|=
T Consensus 7 ~~~V~~WL~~lgL~~Y 22 (81)
T 1ucv_A 7 GLTVGDWLDSIRMGRY 22 (81)
T ss_dssp CSBHHHHHHHTTCGGG
T ss_pred cchHHHHHHHCCCHHH
Confidence 4568899999998874
No 17
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=27.61 E-value=26 Score=23.56 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCccCC
Q 030903 94 CIEAWLRSLGFHQSS 108 (169)
Q Consensus 94 ~IE~WL~~LG~~qd~ 108 (169)
.++.||+++|+.|=.
T Consensus 4 ~v~~wL~~lgL~~Y~ 18 (74)
T 3k1r_B 4 PLETFLASLHMEDFA 18 (74)
T ss_dssp HHHHHHHTTTCGGGH
T ss_pred hHHHHHHHCCCHHHH
Confidence 478999999987743
No 18
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=25.87 E-value=43 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCccC
Q 030903 93 PCIEAWLRSLGFHQS 107 (169)
Q Consensus 93 P~IE~WL~~LG~~qd 107 (169)
..+..||.++|+.|=
T Consensus 80 ~~v~~WL~~igL~qY 94 (149)
T 3sei_A 80 ANLAVWLSMIGLAQY 94 (149)
T ss_dssp SCHHHHHHHTTCGGG
T ss_pred ccHHHHHHHcCchhh
Confidence 369999999998774
No 19
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=25.81 E-value=28 Score=23.71 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.6
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
...+..||.++|+.|=
T Consensus 16 ~~~V~~WL~~lgL~qY 31 (82)
T 2kso_A 16 HMTVSEWLESIKMQQY 31 (82)
T ss_dssp --CHHHHHHHTTCTTH
T ss_pred cchHHHHHHHCCCHHH
Confidence 3468889999998763
No 20
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=24.45 E-value=35 Score=27.32 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHcCCccCCCCCeeeEEecCCceEEEEeee
Q 030903 90 HSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDM 129 (169)
Q Consensus 90 HsLP~IE~WL~~LG~~qd~~d~~~W~lerP~WsAeL~Ld~ 129 (169)
-.+..||.||...|+....+.+ +.|++++.+|+
T Consensus 212 ~~~e~Le~~L~~~g~l~~~~~~-------~~~~~~~~~~~ 244 (245)
T 1a0r_P 212 FFTGDVESFLNEYGLLPEKEMH-------VLEQTNMEEDM 244 (245)
T ss_dssp CCHHHHHHHHHTTTCSCCC---------------------
T ss_pred ccHHHHHHHHHHcCCCCCcccc-------hhhccchhhcc
Confidence 4567899999999999887764 66677765544
No 21
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=24.31 E-value=30 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCccC
Q 030903 94 CIEAWLRSLGFHQS 107 (169)
Q Consensus 94 ~IE~WL~~LG~~qd 107 (169)
.+.+||.++|..|=
T Consensus 17 ~V~~WL~~lgL~qY 30 (91)
T 1x40_A 17 DIKDFLMSINLEQY 30 (91)
T ss_dssp BHHHHHHTTTCGGG
T ss_pred CHHHHHHHCCCHHH
Confidence 57788888888763
No 22
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=22.57 E-value=35 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCccC
Q 030903 93 PCIEAWLRSLGFHQS 107 (169)
Q Consensus 93 P~IE~WL~~LG~~qd 107 (169)
..+..||.++|+.|=
T Consensus 27 ~~V~~WL~~lgL~qY 41 (100)
T 2kg5_A 27 LDIAVWLATVHLEQY 41 (100)
T ss_dssp CBHHHHHGGGTCGGG
T ss_pred ChHHHHHHHCCCHHH
Confidence 368899999998764
No 23
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=22.39 E-value=35 Score=22.95 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCcc
Q 030903 93 PCIEAWLRSLGFHQ 106 (169)
Q Consensus 93 P~IE~WL~~LG~~q 106 (169)
..++.||..+|..|
T Consensus 13 ~~V~eWL~~i~L~~ 26 (78)
T 1v38_A 13 QTIQEFLERIHLQE 26 (78)
T ss_dssp CBHHHHHHTTTCGG
T ss_pred CcHHHHHHHCCCHH
Confidence 35777888888876
No 24
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=22.03 E-value=43 Score=22.06 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=12.4
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
--.+..||+++|+.|=
T Consensus 7 ~~~V~~WL~~lgl~~Y 22 (76)
T 2f3n_A 7 KFDVGDWLESIHLGEH 22 (76)
T ss_dssp HHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHCCCHHH
Confidence 3467889999998753
No 25
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=20.99 E-value=64 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.687 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCChH---HHHHHHHHcCCccCC
Q 030903 80 LPEKNKPLYSHSLP---CIEAWLRSLGFHQSS 108 (169)
Q Consensus 80 LP~~~TPLYnHsLP---~IE~WL~~LG~~qd~ 108 (169)
+-..+.| +.|+|| ++++.|+++|..+++
T Consensus 84 ~~d~~~~-~ph~LP~~~~f~~~l~~lGI~~d~ 114 (327)
T 3utn_X 84 ISDKKSP-YPHMFPTKKVFDDAMSNLGVQKDD 114 (327)
T ss_dssp SSCTTSS-STTCCCCHHHHHHHHHHTTCCTTC
T ss_pred hcCCCCC-CCCCCcCHHHHHHHHHHcCCCCCC
Confidence 4445566 679998 577889999988765
No 26
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=20.91 E-value=39 Score=24.26 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCccC
Q 030903 94 CIEAWLRSLGFHQS 107 (169)
Q Consensus 94 ~IE~WL~~LG~~qd 107 (169)
.+..||.++|+.|=
T Consensus 31 ~V~eWL~~LgL~qY 44 (101)
T 2lmr_A 31 SVGEWLESIGLQQY 44 (101)
T ss_dssp CHHHHHHHHTCGGG
T ss_pred cHHHHHHHCCCHHH
Confidence 68889999998763
No 27
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.27 E-value=35 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHcCCcc
Q 030903 87 LYSHSLPCIEAWLRSLGFHQ 106 (169)
Q Consensus 87 LYnHsLP~IE~WL~~LG~~q 106 (169)
..+=+-..+..||+++|+.+
T Consensus 4 v~~Ws~~~V~~WL~~~gl~~ 23 (74)
T 2gle_A 4 VHEWSVQQVSHWLVGLSLDQ 23 (74)
T ss_dssp GGGCCSGGGHHHHHHTTTHH
T ss_pred cccCCHHHHHHHHHHCCCHH
Confidence 33444567788999999765
Done!