Query 030903
Match_columns 169
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 09:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030903.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030903hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ow5a_ a.60.1.2 (A:) Serine/t 75.9 0.43 3.2E-05 29.3 1.1 14 93-106 1-14 (60)
2 d1dxsa_ a.60.1.2 (A:) C-termin 58.0 2 0.00015 26.4 1.5 13 95-107 2-14 (57)
3 d1b0xa_ a.60.1.2 (A:) EphA4 re 53.2 2.2 0.00016 26.7 1.1 17 91-107 3-19 (72)
4 d1x40a1 a.60.1.2 (A:8-85) Cent 49.9 3.1 0.00022 26.5 1.4 14 94-107 10-23 (78)
5 d1b4fa_ a.60.1.2 (A:) EphB2 re 48.7 3.7 0.00027 25.6 1.6 15 92-106 6-20 (74)
6 d1ucva_ a.60.1.2 (A:) Ephrin t 43.2 5 0.00036 25.5 1.6 14 94-107 9-22 (81)
7 d1v38a_ a.60.1.2 (A:) Sam-doma 42.5 4.7 0.00034 25.4 1.4 15 93-107 13-27 (78)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 42.5 7.8 0.00056 24.6 2.5 35 91-126 21-55 (75)
9 d1oxja1 a.60.1.2 (A:594-655) R 39.1 5.9 0.00043 24.5 1.5 20 92-111 5-24 (62)
10 d1k6ka_ a.174.1.1 (A:) N-termi 32.4 9.4 0.00069 24.9 1.7 18 151-168 124-141 (142)
11 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 28.0 17 0.0012 22.2 2.3 62 37-105 5-78 (78)
12 d2d8ca1 a.60.1.2 (A:7-91) Sphi 27.7 21 0.0015 23.0 2.9 45 83-132 7-51 (85)
13 d2aj6a1 d.108.1.1 (A:1-118) Hy 25.0 16 0.0012 22.7 1.8 16 92-107 100-115 (118)
14 d3proc2 d.52.1.1 (C:86-163) Al 22.1 16 0.0011 24.6 1.3 32 90-121 1-41 (78)
15 d2f3na1 a.60.1.2 (A:2-65) Sh3 20.3 28 0.002 20.3 2.1 15 92-106 6-20 (64)
No 1
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.91 E-value=0.43 Score=29.31 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCcc
Q 030903 93 PCIEAWLRSLGFHQ 106 (169)
Q Consensus 93 P~IE~WL~~LG~~q 106 (169)
|-+++||+++|+.+
T Consensus 1 p~V~~wL~~lgL~~ 14 (60)
T d1ow5a_ 1 PFVQLFLEEIGCTQ 14 (60)
T ss_dssp CHHHHHHHHHSCTH
T ss_pred CcHHHHHHHCcCHH
Confidence 67999999999976
No 2
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.05 E-value=2 Score=26.42 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.3
Q ss_pred HHHHHHHcCCccC
Q 030903 95 IEAWLRSLGFHQS 107 (169)
Q Consensus 95 IE~WL~~LG~~qd 107 (169)
|++||+++|+.|=
T Consensus 2 v~~wL~~lgL~~Y 14 (57)
T d1dxsa_ 2 LVSFLTGLGCPNC 14 (57)
T ss_dssp HHHHHHHTTCTTS
T ss_pred HHHHHHHCCcHHH
Confidence 7899999999873
No 3
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.23 E-value=2.2 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.536 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHcCCccC
Q 030903 91 SLPCIEAWLRSLGFHQS 107 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd 107 (169)
++..+.+||+++|+.|=
T Consensus 3 ~v~sV~~WL~~lgL~~Y 19 (72)
T d1b0xa_ 3 AVVSVGDWLQAIKMDRY 19 (72)
T ss_dssp SSCCHHHHHHHTTCGGG
T ss_pred chhhHHHHHHHCCcHHH
Confidence 45678999999999873
No 4
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}
Probab=49.94 E-value=3.1 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCccC
Q 030903 94 CIEAWLRSLGFHQS 107 (169)
Q Consensus 94 ~IE~WL~~LG~~qd 107 (169)
.+++||+++|+.|=
T Consensus 10 dV~~WL~~lgL~~Y 23 (78)
T d1x40a1 10 DIKDFLMSINLEQY 23 (78)
T ss_dssp BHHHHHHTTTCGGG
T ss_pred hHHHHHHHCchHHH
Confidence 58999999999874
No 5
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.69 E-value=3.7 Score=25.57 Aligned_cols=15 Identities=20% Similarity=0.683 Sum_probs=12.5
Q ss_pred hHHHHHHHHHcCCcc
Q 030903 92 LPCIEAWLRSLGFHQ 106 (169)
Q Consensus 92 LP~IE~WL~~LG~~q 106 (169)
+-.+++||+++|+.|
T Consensus 6 ~~~V~~WL~~lgL~~ 20 (74)
T d1b4fa_ 6 FNTVDEWLEAIKMGQ 20 (74)
T ss_dssp CSSHHHHHHHTTCGG
T ss_pred cccHHHHHHHCCCHH
Confidence 345899999999887
No 6
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.16 E-value=5 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCccC
Q 030903 94 CIEAWLRSLGFHQS 107 (169)
Q Consensus 94 ~IE~WL~~LG~~qd 107 (169)
.+.+||+++|+.|=
T Consensus 9 sV~~WL~~lgL~qY 22 (81)
T d1ucva_ 9 TVGDWLDSIRMGRY 22 (81)
T ss_dssp BHHHHHHHTTCGGG
T ss_pred cHHHHHHHCccHHH
Confidence 58899999998874
No 7
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.54 E-value=4.7 Score=25.36 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCccC
Q 030903 93 PCIEAWLRSLGFHQS 107 (169)
Q Consensus 93 P~IE~WL~~LG~~qd 107 (169)
..+++||+++|+.|=
T Consensus 13 ~~V~~WL~~lgL~~Y 27 (78)
T d1v38a_ 13 QTIQEFLERIHLQEY 27 (78)
T ss_dssp CBHHHHHHTTTCGGG
T ss_pred HHHHHHHHHCCHHHH
Confidence 468999999998873
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=42.50 E-value=7.8 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHcCCccCCCCCeeeEEecCCceEEEE
Q 030903 91 SLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLS 126 (169)
Q Consensus 91 sLP~IE~WL~~LG~~qd~~d~~~W~lerP~WsAeL~ 126 (169)
+--.|...|+.|||.-+. +-..|.+.-|.|..-|.
T Consensus 21 ~~~~i~~~L~~Lg~~~~~-~~~~~~V~vPs~R~Di~ 55 (75)
T d1jjcb2 21 PEAEQIAILKRLGCRVEG-EGPTYRVTPPSHRLDLR 55 (75)
T ss_dssp CHHHHHHHHHHTTCEEEC-SSSSEEEECCTTCTTCC
T ss_pred CHHHHHHHHHHcCCceEe-cCCcEEEecchhccccC
Confidence 345789999999998554 44579999999986443
No 9
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}
Probab=39.12 E-value=5.9 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCccCCCCC
Q 030903 92 LPCIEAWLRSLGFHQSSDDR 111 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd~~d~ 111 (169)
+..|.+||+++|+.|=.+..
T Consensus 5 ~~~v~~WL~~l~L~~Y~~~F 24 (62)
T d1oxja1 5 MSGIGLWLKSLRLHKYIELF 24 (62)
T ss_dssp CTTHHHHHHHTTCGGGGGGG
T ss_pred hhHHHHHHHHCCcHHHHHHH
Confidence 34689999999998765543
No 10
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Probab=32.41 E-value=9.4 Score=24.92 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=15.7
Q ss_pred ecccCCCHHHHHHHHhcC
Q 030903 151 RFSYALSREDIENAILGG 168 (169)
Q Consensus 151 sF~YsLSReDVEaAIf~G 168 (169)
--+||++|+||.++|-.|
T Consensus 124 L~~~Gi~~~~l~~~Is~g 141 (142)
T d1k6ka_ 124 LRKHEVSRLDVVNFISHG 141 (142)
T ss_dssp HHHTTCCHHHHHHHHHTC
T ss_pred HHHCCCCHHHHHHHHhcC
Confidence 357899999999999888
No 11
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.97 E-value=17 Score=22.24 Aligned_cols=62 Identities=24% Similarity=0.498 Sum_probs=34.4
Q ss_pred ccCCCCCCCCccc-cCCCcceeeeecCchhhccCCCchhHHhhhC----CCCCC------CCCCCCh-HHHHHHHHHcCC
Q 030903 37 FSKFPSCPHPITH-SHKKTLTLAFSQSFEAEEELPSTEDEWLEKL----PEKNK------PLYSHSL-PCIEAWLRSLGF 104 (169)
Q Consensus 37 ~~k~~~~~~~~~~-~~~~~~~~~~~~s~~~~e~~~~~~~~w~~~L----P~~~T------PLYnHsL-P~IE~WL~~LG~ 104 (169)
.+.-+.| |+|. .-+.|.+.....+.+.+ .-.+|++.= |--.. ..-||.| -.||+|+++.|.
T Consensus 5 iP~~l~C--pIc~~~m~dPV~~~cgh~fc~~-----ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~ 77 (78)
T d1t1ha_ 5 FPEYFRC--PISLELMKDPVIVSTGQTYERS-----SIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CSSSSSC--TTTSCCCSSEEEETTTEEEEHH-----HHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCccCCC--cCcCchhhCceEccCCCcchHH-----HHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence 3444555 4555 44666655444455442 234566431 22222 2347777 579999999986
Q ss_pred c
Q 030903 105 H 105 (169)
Q Consensus 105 ~ 105 (169)
+
T Consensus 78 e 78 (78)
T d1t1ha_ 78 E 78 (78)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.69 E-value=21 Score=22.99 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCCCCCCCChHHHHHHHHHcCCccCCCCCeeeEEecCCceEEEEeeeeee
Q 030903 83 KNKPLYSHSLPCIEAWLRSLGFHQSSDDRAVWLVEKHDWHAQLSLDMTDL 132 (169)
Q Consensus 83 ~~TPLYnHsLP~IE~WL~~LG~~qd~~d~~~W~lerP~WsAeL~Ld~edL 132 (169)
..+|+.+=+--.+.+||+++|+.+-.+..+. =+-.+-+.|+.+||
T Consensus 7 ~~~~V~~Ws~~dV~~WL~~~gl~~Y~~~F~~-----IdG~~Ll~Lt~~dL 51 (85)
T d2d8ca1 7 TMKEVVYWSPKKVADWLLENAMPEYCEPLEH-----FTGQDLINLTQEDF 51 (85)
T ss_dssp CCSCCSSCCTTHHHHHHHHTTCTTTTTTTTT-----CCHHHHHTCCHHHH
T ss_pred ccCChhhCCHHHHHHHHHHCcHHHHHHHHHh-----ccHHHHHHCCHHHH
Confidence 4567888888899999999999886666522 24444444444444
No 13
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]}
Probab=25.05 E-value=16 Score=22.66 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=13.9
Q ss_pred hHHHHHHHHHcCCccC
Q 030903 92 LPCIEAWLRSLGFHQS 107 (169)
Q Consensus 92 LP~IE~WL~~LG~~qd 107 (169)
|-.+|.|.+++||.+-
T Consensus 100 l~~~~~~a~~~g~~~i 115 (118)
T d2aj6a1 100 KIALEKWAKTMNAKRI 115 (118)
T ss_dssp HHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHhCCCEE
Confidence 6789999999999864
No 14
>d3proc2 d.52.1.1 (C:86-163) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=22.07 E-value=16 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHcCCccCCCC---------CeeeEEecCCc
Q 030903 90 HSLPCIEAWLRSLGFHQSSDD---------RAVWLVEKHDW 121 (169)
Q Consensus 90 HsLP~IE~WL~~LG~~qd~~d---------~~~W~lerP~W 121 (169)
|+|-.+++||.+|-+..+.-| .+.|++.-+.=
T Consensus 1 ~sl~~l~~~~~~Lda~~~~ld~~~~~~p~~V~~WYVDv~tN 41 (78)
T d3proc2 1 YSLKQLQSAMEQLDAGANARVKGVSKPLDGVQSWYVDPRSN 41 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHC--------CTTEEEEEEEGGGT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccCCCCceeEEeecCCC
Confidence 899999999999987554444 48999987753
No 15
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=20.34 E-value=28 Score=20.33 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=11.7
Q ss_pred hHHHHHHHHHcCCcc
Q 030903 92 LPCIEAWLRSLGFHQ 106 (169)
Q Consensus 92 LP~IE~WL~~LG~~q 106 (169)
.-.+.+||+++|+.|
T Consensus 6 ~~~V~~wL~~~gl~~ 20 (64)
T d2f3na1 6 KFDVGDWLESIHLGE 20 (64)
T ss_dssp HHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHCCCHH
Confidence 346788999999876
Done!