BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030904
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA+ G + ++L L+ ++ ++G T LHL G+L V+
Sbjct: 32 DKNGRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
LLLE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 86 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
TP HL AA+ G + ++L L+ ++ ++G T LHL G+L V+LLL
Sbjct: 2 GRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
E GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
+G T LHL G+L V+LLLE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 130 T--------------------ECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQ 162
E VK +LE A D + D+N L + +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAAR 110
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
TP HL AA+ G + ++L L+ ++ ++G T LHL G+L V+LLL
Sbjct: 2 GRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
E GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+G T LHL G+L V+LLLE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+DG PLH A G +EIV++L+ + +
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 32 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD+DG PLH A G +EIV++L+ + + + +T
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 65 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
+LL+ GA + A+D+ G P A G +I ++L +A
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+DG PLH A G +EIV++L+ + +
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 44 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD+DG PLH A G +EIV++L+ + + + +T
Sbjct: 98 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+DG PLH A G +EIV++L+ + +
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 32 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+LL+ GA + AKD+DG PLH A G +EIV++L+ + +
Sbjct: 86 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 65 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
+LL+ GA + A+D+ G P A G +I ++L +A
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
DG T LH G+ V+LL+ +GA + AKD DG PLH A G E+V+LLI+ +
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 130 TECVKRMLETVDAEGDTDCD 149
+ T D++G T D
Sbjct: 129 -------VNTSDSDGRTPLD 141
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH G+ V+LL+ +GA + AKD DG PLH A G E+V+LLI+ +
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
DG T LH G+ V+LL+ +GA + D DG PL A G E+V+LL
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
T LHL Y + VQLLL+ GA + AKD+ G +PLH+AC+ G E+ +LL+ +
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA--- 115
Query: 132 CVKRM 136
CV M
Sbjct: 116 CVNAM 120
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA V ++L L + + + G LH C YG+ +
Sbjct: 55 DGRKSTPLHL-----AAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
LLL+ GA + A D PLH+A + +E+ LL++ +
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
+++E +D T LH+ + +++L + GA + A D G LH A G ++ +
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 122 LLINSAS 128
LL++ S
Sbjct: 298 LLLSYGS 304
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
GDT LHL LYG+L V++LL+ GA + A D G PLH A G +EIV++L+ +
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 140 NAQDKFGKT 148
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ + G T LHL + G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A D+ G PLH A G +EIV++L+ + +
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
V++L+ GA + A+D+ G PLH A G +EIV++L+ + +M +T
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDT 82
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D +TP HL AA G + + + L N ++ G T LHL G+L V+
Sbjct: 77 DKMGDTPLHL-----AALYGHLEIVEVLLKN-GADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 89 LLLERGASLEAKDEDG 104
+LL+ GA + A+D+ G
Sbjct: 131 VLLKYGADVNAQDKFG 146
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH G+ V+LL+ +GA + AKD DG PLH A G EIV+LLI+ +
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP H AA+ G ++L + ++ DG T LH G+ V+
Sbjct: 67 DSDGRTPLHY-----AAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
LL+ +GA + D DG PL A G EIV+LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D+ TP HL AA G + + + L N ++ G T LHL +G+L V+
Sbjct: 44 DVVGWTPLHL-----AAYWGHLEIVEVLLKN-GADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD++G PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA G + + + L N ++ ++G T LHL G+L V+
Sbjct: 77 DTLGSTPLHL-----AAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
+LL+ GA + A+D+ G + G EI+Q L
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+ G +PLH+AC+ G E+ +LL+ +
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ G LH C YG+ +LL++ GA + D PLH+A A G EI +LL+ +
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 129 GTECVKRMLET---VDAEGDTDCDD 150
R T + +GDTD D
Sbjct: 133 DPTKKNRDGNTPLDLVKDGDTDIQD 157
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL +G+L V++LL+ GA + A D DG PLH A G++EIV++L+ +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 140 NAQDKFGKT 148
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ G +R+ + N ++ G T LHL G+L V++LL+ GA ++
Sbjct: 16 RKLLEAARAGQDDEVRILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A D G PLH A G +EIV++L+ + +
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D+ TP HL AA G + + + L N ++ DG T LHL +GYL V+
Sbjct: 77 DVFGYTPLHL-----AAYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 89 LLLERGASLEAKDEDG 104
+LL+ GA + A+D+ G
Sbjct: 131 VLLKHGADVNAQDKFG 146
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+ G +PLH+AC+ G E+ +LL+ +
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ G LH C YG+ +LL++ GA + D PLH+A A G EI +LL+ +
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 129 GTECVKRMLET---VDAEGDTDCDD 150
R T + +GDTD D
Sbjct: 135 DPTKKNRDGNTPLDLVKDGDTDIQD 159
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 14 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 73
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD+ G +PLH+AC+ G E+ +LL+ +
Sbjct: 74 AKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ G LH C YG+ +LL++ GA + D PLH+A A G EI +LL+ +
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 129 GTECVKRMLET---VDAEGDTDCDD 150
R T + +GDTD D
Sbjct: 137 DPTKKNRDGNTPLDLVKDGDTDIQD 161
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G+ ++ L+N ++ DG T LHL G+ V+LLL +GA
Sbjct: 6 KRLIEAAENGNKDRVKDLLEN-GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
AKD DG PLH A G E+V+LL++ +
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + +TP HL AA+ G ++L L + DG T LHL G+ V+
Sbjct: 34 DSDGKTPLHL-----AAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDC 148
LLL +GA AKD DG PLH A G E+V+LL++ + T D++G T
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP-------NTSDSDGRTPL 140
Query: 149 D 149
D
Sbjct: 141 D 141
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + +TP HL AA+ G ++L L + DG T LHL G+ V+
Sbjct: 67 DSDGKTPLHL-----AAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
LLL +GA D DG PL A G E+V+LL
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
DG TALH C+ + V+ L+E GA++ D +G IPLH A + G+++I + LI+ +
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA- 130
Query: 130 TECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVN 165
+ V++EGDT D + ++Q EVN
Sbjct: 131 ------HVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 61 SGSIDE--PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
SG I++ + G TALH+ GY ++LL++ + KD DG PLH A G E
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 119 IVQLLINSASGTECVKRMLET 139
++L+ + E V ++ +T
Sbjct: 247 ACRILVENLCDMEAVNKVGQT 267
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
DG T LH G+ V+LLL +GA AKD DG PLH A G EIV+LL++ +
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 130 TECVKRMLETVDAEGDTDCD 149
T D++G T D
Sbjct: 129 P-------NTSDSDGRTPLD 141
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH G+ V+LLL +GA AKD DG PLH A G EIV+LL++ +
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
DG T LH G+ V+LLL +GA D DG PL A G EIV+LL
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G+T LHL Y +L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A D DG+ PLH A G +EIV++L+ + + +T
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA G + + + L N ++ G T LHL G+L V+
Sbjct: 44 DFTGWTPLHL-----AAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A D G PLH A G +EIV++L+ + + + +T
Sbjct: 98 VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 54 RLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
RLA SG ++ +DG + LH+ L+G + LLL+ GA+ A++ D A+PLH AC
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 113 AGGFIEIVQLLINS 126
G ++V+ L++S
Sbjct: 128 QQGHFQVVKCLLDS 141
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
D LHL C G+ V+ LL+ A KD G PL AC+GG E+V LL+ +
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
P HL A Q G ++ LD+ + ++ G+T L C G+ V LLL+
Sbjct: 121 VPLHL-----ACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND 153
GAS+ A + G LH+A + +V+LL+ + + + + T DC +QN
Sbjct: 175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA-----VDCAEQNS 229
Query: 154 LV 155
+
Sbjct: 230 KI 231
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+T LH+ + G +P V+ LL+ G+ KD G PLH+AC G +++V+LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---- 65
Query: 131 ECVKRMLETVDAEGDTDCDD 150
K ++ T + D+ D
Sbjct: 66 ---KALVNTTGYQNDSPLHD 82
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLE 98
L A+ GD+ S+ L N S D V+D G T LH C +G+L V+LLL+ A +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGS---DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRM-LETVDAEGD 145
PLHDA G ++IV+LL++ + V L VD D
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +DG+T LHL G+ V+LLL +GA + A+ +DG P H A G EIV+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+DG+T LH G+ V+ LL +GA + A+ +DG PLH A G EIV+LL+ A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--AK 64
Query: 129 GTECVKRMLETVDAEGDTDCDDQNDLVSLF 158
G + R + E + +++V L
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 3 VPRNGMMEEDDSEEDNALFEEDGVNMDLESE---TPPHLRDLAAAAQLGDVHSLRLALDN 59
P + + +EE L + G +++ S+ TP HL AA+ G ++L L
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHL-----AAKNGHAEIVKLLLAK 64
Query: 60 LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
++ +DG+T HL G+ V+LL +GA + A+
Sbjct: 65 -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ DG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A D G PLH A A G +EIV++L+ +
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA G + + + L N ++ G T LHL G+L V+
Sbjct: 44 DNDGYTPLHL-----AASNGHLEIVEVLLKN-GADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A D DG PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL YG+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
A D G+ PLH A G +EIV++L+ + VD GDT
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDT 115
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL L G+L V++LL+ GA + A D G PLH A G +EIV++L+ +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 140 NAQDKFGKT 148
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D+ TP HL AA +G + + + L + ++ GDT LHL + G+L V
Sbjct: 76 IDIXGSTPLHL-----AALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 130 EVLLKHGADVNAQDKFG 146
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ EDG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A+D G PLH A G +EIV++L+ + + +T
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLP 85
+D + TP HL AAQLG + + + L D ED G T LHL + G+L
Sbjct: 43 LDEDGLTPLHL-----AAQLGHLEIVEVLLKY---GADVNAEDNFGITPLHLAAIRGHLE 94
Query: 86 CVQLLLERGASLEAKDEDG 104
V++LL+ GA + A+D+ G
Sbjct: 95 IVEVLLKHGADVNAQDKFG 113
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ + G T LHL G+ V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A+D DG PLH A G +EIV++L+ +
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA +G + + L + ++ DG T LHL G+L V+
Sbjct: 44 DDQGSTPLHL-----AAWIGHPEIVEVLLKH-GADVNARDTDGWTPLHLAADNGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A+D G PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
+ L AA+ G +R+ + N D ED GDT LHL G+L V++LL+ GA
Sbjct: 16 KKLLEAARAGQDDEVRILMAN---GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ A D G+ PLH A G +EIV++L+ +
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D +TP HL AA++G + + + L N ++ G T LHL G+L V+
Sbjct: 44 DTYGDTPLHL-----AARVGHLEIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A D G+ PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D TP HL AA+ G + + + L ++ G T LHL G+L V
Sbjct: 76 LDFSGSTPLHL-----AAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIV 129
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 130 EVLLKYGADVNAQDKFG 146
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL YG+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
A D G+ PLH A G +EIV++L+ + VD GDT
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDT 115
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
G T LHL L G+L V++LL+ GA + A D G PLH A G +EIV++L+ +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D+ TP HL AA +G + + + L + ++ GDT LHL + G+L V
Sbjct: 76 IDIMGSTPLHL-----AALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 130 EVLLKHGADVNAQDKFG 146
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP H+ AA +G + + + L N ++ +G T LHL G+L V+
Sbjct: 32 DHYGRTPLHM-----AAAVGHLEIVEVLLRN-GADVNAVDTNGTTPLHLAASLGHLEIVE 85
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD G PL+ A G +EIV++L+ + + +T
Sbjct: 86 VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
V++L+ GA A D G PLH A A G +EIV++L+ + + V
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D TP HL AA LG + + + L ++ G T L+L +G+L V
Sbjct: 64 VDTNGTTPLHL-----AASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIV 117
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 118 EVLLKHGADVNAQDKFG 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA G + + + L N ++ G T L L L+G+L V+
Sbjct: 44 DASGWTPLHL-----AAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A D +G PLH A G +EIV++L+ + + + +T
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
V++L+ GA + A+D G PLH A G +EIV++L+ + + V
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA+ G + + + L ++ G T LHL G+L V+
Sbjct: 44 DWLGHTPLHL-----AAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD +G PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
V++L+ GA + A D G PLH A G +EIV++L+ +
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
+P + D+ + G+ ++RL LDN +++ + G + LH C G V++L+ R
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
GA + + PLH A + G +IVQ L+ + V
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ-LLINSASGT 130
DT LHL +G+ VQ LL+ A + A +E G +PLH AC G ++ + L+ N A +
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 131 ECVK 134
C K
Sbjct: 133 ICNK 136
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
M+ +TP HL AA G ++ L I+ E G+ LH C +G
Sbjct: 68 MNRGDDTPLHL-----AASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 88 QLLLERGASLEAKDEDGAIPLHDACA 113
+ L+ GA + ++ G +P+ A A
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKA 147
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
TP HL AA G + + + L N ++ G T LHL G+L V++LL+
Sbjct: 49 TPLHL-----AAYFGHLEIVEVLLKN-GADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
GA + A D +G PLH A G +EIV++L+ + + +T
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL +G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A D G PLH A G +E+V++L+ + +
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 50 VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
+H +L+L NL +++ D + LH CL G+L CV++LL+ GA + D
Sbjct: 12 IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 71
Query: 107 PLHDACAGGFIEIVQLLINSASGTE 131
PL +AC G + V LL+ + +
Sbjct: 72 PLFNACVSGSWDCVNLLLQHGASVQ 96
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS 96
H+ L A G + +++ L + ++ D T L C+ G CV LLL+ GAS
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
++ + D A P+H+A G +E V LI
Sbjct: 95 VQ-PESDLASPIHEAARRGHVECVNSLI 121
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ +H ++G+ ++ L+ +G ++ D PLH+AC GG + V++L+ +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL-EAKDE 102
AA+ G V + +L G+ID + T L+L C CV+ LLE GA + + K +
Sbjct: 108 AARRGHVECVN-SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ 166
Query: 103 DGAIPLHDACAGGFIEIVQLLINSASGTECV----KRMLETVDAE 143
D PLH E+ LL++ + T+ KR +E V E
Sbjct: 167 DS--PLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G+ +P D + +H G++ CV L+ G +++ K PL+ AC
Sbjct: 92 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN------- 144
Query: 122 LLINSASGTECVKRMLET 139
CVK++LE+
Sbjct: 145 ------QQRACVKKLLES 156
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 50 VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
+H +L+L NL +++ D + LH CL G+L CV++LL+ GA + D
Sbjct: 68 IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 127
Query: 107 PLHDACAGGFIEIVQLLINSASGTE 131
PL +AC G + V LL+ + +
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQ 152
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS 96
H+ L A G + +++ L + ++ D T L C+ G CV LLL+ GAS
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
++ + D A P+H+A G +E V LI
Sbjct: 151 VQ-PESDLASPIHEAARRGHVECVNSLI 177
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ +H ++G+ ++ L+ +G ++ D PLH+AC GG + V++L+ +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL-EAKDE 102
AA+ G V + +L G+ID + T L+L C CV+ LLE GA + + K +
Sbjct: 164 AARRGHVECVN-SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ 222
Query: 103 DGAIPLHDACAGGFIEIVQLLINSASGTECV----KRMLETVDAE 143
D PLH E+ LL++ + T+ KR +E V E
Sbjct: 223 DS--PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G+ +P D + +H G++ CV L+ G +++ K PL+ AC E Q
Sbjct: 148 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQ 202
Query: 122 LLINSASGTECVKRMLET 139
CVK++LE+
Sbjct: 203 --------RACVKKLLES 212
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ G T LHL G+L V++LL+ GA + A D G PLH A G +EIV++L+ +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 129 GTECVKRMLET 139
+ +T
Sbjct: 138 DVNAQDKFGKT 148
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
G T LHL G+L +++LL+ A + A D+ G PLH A G +EIV++L+ +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
V++L+ GA + A D G PLH G +EI+++L+ A+
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL + G+L V++LL+ GA ++
Sbjct: 16 KKLLEAARAGQDDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
A D G PLH A G +EIV++L+ +
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL + G+L V++LL+ GA + A D G+ PLH A G +EIV++L+ +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 140 NAQDKFGKT 148
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
D+ + G+ ++RL LDN +++ + G + LH C G V++L+ RGA +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
+ PLH A + G +IVQ L+ + V
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ-LLINSASGT 130
DT LHL +G+ VQ LL+ A + A +E G +PLH AC G ++ + L+ N A +
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 131 ECVK 134
C K
Sbjct: 128 ICNK 131
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
M+ +TP HL AA G ++ L I+ E G+ LH C +G
Sbjct: 63 MNRGDDTPLHL-----AASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVA 116
Query: 88 QLLLERGASLEAKDEDGAIPLHDACA 113
+ L+ GA + ++ G +P+ A A
Sbjct: 117 EDLVANGALVSICNKYGEMPVDKAKA 142
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA G +R+ + N ++ ++G T LHL G L V++LL+ GA +
Sbjct: 8 KKLLEAAAAGQDDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
A D G PLH A G +EIV++L+ + R
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
TP HL AA G + + + L N ++ G T LHL G+L V++LL+
Sbjct: 41 TPLHL-----AAANGQLEIVEVLLKN-GADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GA + A D G PLH A G +EIV++L+ +
Sbjct: 95 GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
G T LHL L G L V++LL+ GA + A+D G
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
MD TP HL AA+ G + + + L + ++ G T LHL G+L V
Sbjct: 43 MDDAGVTPLHL-----AAKRGHLEIVEVLLKH-GADVNASDSWGRTPLHLAATVGHLEIV 96
Query: 88 QLLLERGASLEAKDEDG 104
++LLE GA + A+D+ G
Sbjct: 97 EVLLEYGADVNAQDKFG 113
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A+D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLP 85
MD TP HL AA+ G + + + L + D D G T LHL G+L
Sbjct: 43 MDDAGVTPLHL-----AAKRGHLEIVEVLLKH---GADVNARDIWGRTPLHLAATVGHLE 94
Query: 86 CVQLLLERGASLEAKDEDG 104
V++LLE GA + A+D+ G
Sbjct: 95 IVEVLLEYGADVNAQDKFG 113
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL-ERGASL 97
RD A+A+L ++ D + E + G TALH P V+ L+ E+G++
Sbjct: 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYK-GRTALHYAAQVSNXPIVKYLVGEKGSNK 306
Query: 98 EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSL 157
+ +DEDG P+ A G IE+V LI + E V T A ++ +++V +
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHT--ARQLAQANNHHNIVDI 364
Query: 158 F 158
F
Sbjct: 365 F 365
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+D G T LH+ YG + V+ LL+ A + AK + G PLH A G +IV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 124 I-NSASGTEC 132
+ N AS E
Sbjct: 364 LKNGASPNEV 373
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 20 LFEEDGVNMDLES---ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH 76
L E+ N +L + TP H+ AA+ G V ++ LAL S + G T LH
Sbjct: 98 LLLENNANPNLATTAGHTPLHI-----AAREGHVETV-LALLEKEASQACMTKKGFTPLH 151
Query: 77 LTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ YG + +LLLER A A ++G PLH A ++IV+LL+
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
T LH+ G+LP V+ LL+RGAS + PLH A G E+ + L+ + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
+++ ETP H+ AA+ G + L N ++ +D T LH G+ V+
Sbjct: 44 NVKVETPLHM-----AARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVK 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
LLLE A+ G PLH A G +E V L+ + C+ +
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCV 87
++ TP HL AAQ G + L L +G++ + G T LHL G++P
Sbjct: 242 SVQGVTPLHL-----AAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVA 294
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRM----LETVDAE 143
+L++ G ++A G PLH A G I++V+ L+ + ++ L +
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354
Query: 144 GDTDC 148
G TD
Sbjct: 355 GHTDI 359
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
GS P +G T LH+ + + LL+ G S A+ G PLH A G E+V
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 122 LLI----NSASGTECVKRMLETVDAEGDTDCDD 150
LL+ N G + L V EG D
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 19 ALFEEDGVN--MDLESETPPHLRDLAAAAQLGDVHSLRLALD-----NLSGSIDEPVEDG 71
AL E++ M + TP H+ AA+ G V L L+ N +G ++G
Sbjct: 131 ALLEKEASQACMTKKGFTPLHV-----AAKYGKVRVAELLLERDAHPNAAG------KNG 179
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
T LH+ + L V+LLL RG S + +G PLH A +E+ + L+
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L A+ G++ ++ L + ++ + G + LH G+ V LLL+ GAS
Sbjct: 315 LHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECV-----KRML--ETVDAEGDTDCDDQND 153
DG PL A G+I + +L T V RM ETVD D D+ +
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEE 433
Query: 154 LVSL 157
L+S
Sbjct: 434 LISF 437
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
TP H+ AA+ V R +L GS + G T LHL G+ V LLL +
Sbjct: 214 TPLHI-----AAKQNQVEVAR-SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRM 136
A+ ++ G PLH G + + +LI + RM
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
GAS+ KD+ IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLINS 126
+ LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
GAS+ KD+ IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLINS 126
+ LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
GAS+ KD+ IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLINS 126
+ LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
KD+ G PLH A + G EIV+ L+ + V +
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ 104
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
TA+H G L + +LL AS +D +G PLH AC +E +LL++ +
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 67 PVEDGDTA----LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
PV D D A LH+ G V+ LL +GA + A +++G PLH A + EI +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 123 LI 124
L+
Sbjct: 125 LL 126
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G ++++ +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 129 GTECVKRMLETVDAEGDTD----CDDQNDLVSLFIMQQEVNTWM 168
T D EG+T CD++ + ++ Q + ++
Sbjct: 164 ST-------NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 200
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+G+T LHL C + +LL+ +GAS+ ++++ PL A GG I++ ++
Sbjct: 171 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 224
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
MD TP HL AA+ G + + + L + ++ G T LHL G+L V
Sbjct: 43 MDDAGVTPLHL-----AAKRGHLEIVEVLLKH-GADVNASDIWGRTPLHLAATVGHLEIV 96
Query: 88 QLLLERGASLEAKDEDG 104
++LLE GA + A+D+ G
Sbjct: 97 EVLLEYGADVNAQDKFG 113
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 13 NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
KD+ G PLH A + G EIV+ L+ + V +
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ 105
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
TA+H G L + +LL AS +D +G PLH AC +E +LL++ +
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 67 PVEDGDTA----LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
PV D D A LH+ G V+ LL +GA + A +++G PLH A + EI +
Sbjct: 66 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 125
Query: 123 LI 124
L+
Sbjct: 126 LL 127
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G ++++ +L+ +
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 129 GTECVKRMLETVDAEGDTD----CDDQNDLVSLFIMQQEVNTWM 168
T D EG+T CD++ + ++ Q + ++
Sbjct: 165 ST-------NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 201
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+G+T LHL C + +LL+ +GAS+ ++++ PL A GG I++ ++
Sbjct: 172 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 225
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
KD+ G PLH A + G EIV+ L+ + V +
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G +++V +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 129 GTECVKRMLETVDAEGDTD----CDDQNDLVSLFIMQQEVNTWM 168
T D EG+T CD++ + F++ Q + ++
Sbjct: 164 ST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 67 PVEDGDTA----LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
PV D D A LH+ G V+ LL +GA + A +++G PLH A + EI +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 123 LI 124
L+
Sbjct: 125 LL 126
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG 114
+G+T LHL C + + L+ +GAS+ ++++ PL A G
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
KD+ G PLH A + G EIV+ L+ + V +
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ 104
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G +++V +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 129 GTECVKRMLETVDAEGDTD----CDDQNDLVSLFIMQQEVNTWM 168
T D EG+T CD++ + F++ Q + ++
Sbjct: 164 ST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 67 PVEDGDTA----LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
PV D D A LH+ G V+ LL +GA + A +++G PLH A + EI +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 123 LI 124
L+
Sbjct: 125 LL 126
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG 114
+G+T LHL C + + L+ +GAS+ ++++ PL A G
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL + G+L V++LL+ GA + A G PLH A +EIV++L+ +
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 107 NAQDKFGKT 115
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA LG + + + L N ++ G T LHL +L V+
Sbjct: 44 DYWGHTPLHL-----AAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 89 LLLERGASLEAKDEDG 104
+LL+ GA + A+D+ G
Sbjct: 98 VLLKHGADVNAQDKFG 113
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
V++L GA + A D G PLH A G +EIV++L+ + +
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ E G T L+L +G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A D G PLH A G +EI ++L+ + + +T
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
G T LHL G+L ++LL+ GA + A+D+ G + G EI+Q L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+ +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
+ + +GDT CD +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ + KD G +HDA GF++ +Q L+
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLL 90
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGAS 96
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGAG 162
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67 PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
P ++G TALH G+ V+ L++ G ++ A D DG PLH A + +++ + L+ S
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
+
Sbjct: 126 GAAV 129
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
+ L AA+ G +R+ + N D ED G T LHL + +L V++LL+ GA
Sbjct: 16 KKLLEAARAGQDDEVRILMAN---GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+ A D G PLH G +EIV++L+ + + +T
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
+ + +GDT CD +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ + KD G +HDA GF++ +Q L+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLL 90
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D E P HL AA+ G + + + + + ++ GDTA L LYG V
Sbjct: 100 DNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 89 LLLERGAS 96
L+ GA
Sbjct: 155 LMQANGAG 162
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67 PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
P ++G TALH G+ V+ L++ G ++ A D DG PLH A + +++ + L+ S
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
+
Sbjct: 126 GAAV 129
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQL-LLERGASLEA 99
L+ AA GDV +R L D G TAL + ++G P V L LL++GAS
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-PAVALELLKQGASPNV 71
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLI 124
+D G P+HDA GF++ +++L+
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLV 96
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 55 LALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
+AL+ L V+D G + +H G+L +++L+E GA + A D G++P+H A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 113 AGGFIEIVQLL 123
G +V L
Sbjct: 118 REGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQL-LLERGASLEA 99
L+ AA GDV +R L D G TAL + ++G P V L LL++GAS
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-PAVALELLKQGASPNV 69
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLI 124
+D G P+HDA GF++ +++L+
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLV 94
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 55 LALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
+AL+ L V+D G + +H G+L +++L+E GA + A D G++P+H A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 113 AGGFIEIVQLL 123
G +V L
Sbjct: 116 REGHSSVVSFL 126
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G + LHL YG+ ++LL G S +A+ + PLH A + G IV++L+ +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 131 ECVKRMLETVDAEGDTDCDDQNDLVSLFI 159
K ML+ T+ + Q ++V L I
Sbjct: 94 NA-KDMLKMTALHWATEHNHQ-EVVELLI 120
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D +P HL AAQ G + + L S D + T LH+ G+ V+
Sbjct: 31 DWLGTSPLHL-----AAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD LH A E+V+LLI + + +T
Sbjct: 85 VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL-------HDACA 113
SG++D+ G TALH CL C++LLL AS+E +E G PL H+ C
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254
Query: 114 GGFIEIVQLLINSASGTECVKRML 137
+ + NS E R+L
Sbjct: 255 ELLTQALSGRFNSHVHVEYEWRLL 278
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L+ AA GDV +R L D G TAL + ++G LL++GAS +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 64
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
D G P+HDA GF++ +++L+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLV 88
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 52 SLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
S +AL+ L V+D G + +H G+L +++L+E GA + D GA+P+H
Sbjct: 47 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 110 DACAGGFIEIVQLL 123
A G +V L
Sbjct: 107 LAVQEGHTAVVSFL 120
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSL 157
+ + +GDT CD +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSL 155
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ + KD G +HDA GF++ +Q L+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLL 90
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGAS 96
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGAG 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
+ + +GDT CD +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ + KD G +HDA GF++ +Q L+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLL 90
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGAS 96
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGAG 162
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L+ AA GDV +R L D G TAL + ++G LL++GAS +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 70
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
D G P+HDA GF++ +++L+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLV 94
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 52 SLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
S +AL+ L V+D G + +H G+L +++L+E GA + D GA+P+H
Sbjct: 53 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 110 DACAGGFIEIVQLL 123
A G +V L
Sbjct: 113 LAVQEGHTAVVSFL 126
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEA 99
L AA+ G++ LR LDN G ++ + G TAL+ C G+ V+ L + L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
+++ G LH A G+ +IVQLL+ + T+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL----HDACAGGFIEIVQLLINS 126
GDTALH GY VQLLL +GA + ++ + + + ACA L+
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACAS--------LLKK 191
Query: 127 ASGTECVKRMLETVDAEGDTDCD 149
GT+ V+ + D D D D
Sbjct: 192 KQGTDAVRTLSNAEDYLDDEDSD 214
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
S + E E D LH G L ++ L+ + D+ G+ L+ AC GG +IV
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 121 QLLI 124
+ L
Sbjct: 123 EXLF 126
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETV 140
V++L+ GA + AKD++G+ PLH A G +E+V+LL+ + + + +T
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N + ++G T LHL G+L V+LLLE GA +
Sbjct: 8 KKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 99 AKDEDG 104
A+D+ G
Sbjct: 67 AQDKFG 72
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
V++L+ GA + AKD+DG PLH A G +EIV++L+ + + + +T
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSA 127
A+D+ G + G ++ ++L +A
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEILQKAA 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
V++L+ GA + AKD++G+ PLH A G +E+V+LL+ + +
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N + ++G T LHL G+L V+LLLE GA +
Sbjct: 26 KKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 99 AKDEDG 104
A+D+ G
Sbjct: 85 AQDKFG 90
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
+ + +GDT CD +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ + KD G +HDA G ++ +Q L+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLL 90
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGAS 96
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGAG 162
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 25 GVNMDLESETP-PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLY 81
G N DL+ T + D A A QL + +L L D +ED G+ LHL
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTL------LEFQADVNIEDNEGNLPLHLAAKE 113
Query: 82 GYLPCVQLLLERGAS 96
G+L V+ L++ AS
Sbjct: 114 GHLRVVEFLVKHTAS 128
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T L + ++GY LLE GA++ ++ +G PL A G EIV+ L+ G
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE--LGA 158
Query: 131 ECVKRMLETVDAEGDTDCDDQNDLVSLF 158
+ R L + AE + +++ +F
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L A LG +++ ++N D+ +E G TAL L + LL +G+++ K
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
D G PL + G+ E+ L+
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLL 121
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+G+T L + YG V+ LLE GA + A+D G A G E++++
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 83
Query: 131 ECVKRM 136
+ RM
Sbjct: 84 DLDARM 89
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 115
Query: 131 ECVKRM 136
+ RM
Sbjct: 116 DLDARM 121
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 20 LFEEDGVNMDLES---ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH 76
LF++ G +D+ + +TP HL A L V L + ++D G TA H
Sbjct: 31 LFQQGGRELDIYNNLRQTPLHL---AVITTLPSVVRLLVTAGASPMALDR---HGQTAAH 84
Query: 77 LTCLYGYLPCVQLLLERGAS----LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
L C + C++ LL+ A LEA++ DG LH A E VQLL+ + +
Sbjct: 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144
Query: 133 V 133
V
Sbjct: 145 V 145
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
L VQLLL+ GA++ A+ G+ LH A G + +V+ L+ S +
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + + T
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-T 116
Query: 131 ECVKRM 136
+ RM
Sbjct: 117 DLDARM 122
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 41 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 93
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 94 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 23 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 75
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 76 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 25 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA-- 95
+ LAA +L + DNL +++P E G T L +G + V+ LLE GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ AK+ + A+ L A GG+ +IV LL+
Sbjct: 63 HILAKERESALSL--ASTGGYTDIVGLLL 89
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L A+ G++ ++R L+ ++ ++AL L GY V LLLER +
Sbjct: 40 LIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
D +G PL A G ++ V+ L+
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALL 122
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
+G T L ++ CV+ LL RGA L + + G P+ A A G+ ++ Q++ N
Sbjct: 101 NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA-- 95
+ LAA +L + DNL +++P E G T L +G + V+ LLE GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+ AK+ + A+ L A GG+ +IV LL+
Sbjct: 63 HILAKERESALSL--ASTGGYTDIVGLLL 89
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L A+ G++ ++R L+ ++ ++AL L GY V LLLER +
Sbjct: 40 LIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
D +G PL A G ++ V+ L+
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVEALL 122
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
+G T L ++ CV+ LL RGA L + + G P+ A A G+ ++ Q++ N
Sbjct: 101 NGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 115
Query: 131 ECVKRM 136
+ RM
Sbjct: 116 DLDARM 121
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+L+ + T
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN-RAT 80
Query: 131 ECVKRM 136
+ RM
Sbjct: 81 DLDARM 86
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G +D DG+TALH LY C++LLL+ A + +E G L A E +
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
Query: 122 LLINSASGT 130
LL + +GT
Sbjct: 258 LLEQAQAGT 266
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143
LP V +++ G L+AK DG LH A + ++LL+ + ++ TV+
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-------RALVGTVNEA 239
Query: 144 GDTDCD 149
G+T D
Sbjct: 240 GETALD 245
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+T+LHL + + LL+ GA ++D G PLH A A + + Q+L+ + T
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN-RAT 109
Query: 131 ECVKRM 136
RM
Sbjct: 110 NLNARM 115
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G TALH V +LL A+ +A+D+ PL A G E + L+++ +
Sbjct: 151 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 210
Query: 131 ECVKRM 136
E M
Sbjct: 211 EITDHM 216
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 24 DGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY 83
D + D TP H AA + ++ L N + +++ + DG T L L
Sbjct: 76 DANSQDNTGRTPLH-----AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
V+ L+ A + A D G LH A A E V +L+
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G +D DG+TALH LY C++LLL+ A + +E G L A E +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 122 LLINSASGT 130
LL + +GT
Sbjct: 277 LLEQAQAGT 285
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143
LP V +++ G L+AK DG LH A + ++LL+ + ++ TV+
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-------RALVGTVNEA 258
Query: 144 GDTDCD 149
G+T D
Sbjct: 259 GETALD 264
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 17/120 (14%)
Query: 22 EEDGVNMDLESETPPHLRD------LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTAL 75
ED V + L P LR AA G V L+L L ++E G TA
Sbjct: 51 REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAF 109
Query: 76 HLTCLYGYLPCVQLLLERGASLEAKDED----------GAIPLHDACAGGFIEIVQLLIN 125
+YG + ++ L +RGA++ + + GA L DA G +E++++L++
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-A 127
E G T LH V+LLL GA + ++GA P A G +++++L ++ A
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 128 SGTEC 132
EC
Sbjct: 97 DVNEC 101
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 20 LFEEDGVNMDLESETPP---HLRDLAA-----AAQLGDVHSLRLALDNLSGSIDEPVEDG 71
+ G N++L +T LR A AA+ G V L++ LD + ++ G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 72 DTALHLTCLYG----YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
AL L LLL+ GA + + E G PL A + +VQ L+
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 17/120 (14%)
Query: 22 EEDGVNMDLESETPPHLRD------LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTAL 75
ED V + L P LR AA G V L+L L ++E G TA
Sbjct: 71 REDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK-GADVNECDFYGFTAF 129
Query: 76 HLTCLYGYLPCVQLLLERGASLEAKDED----------GAIPLHDACAGGFIEIVQLLIN 125
+YG + ++ L +RGA++ + + GA L DA G +E++++L++
Sbjct: 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 189
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-A 127
E G T LH V+LLL GA + ++GA P A G +++++L ++ A
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 128 SGTEC 132
EC
Sbjct: 117 DVNEC 121
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 20 LFEEDGVNMDLESETPP---HLRDLAA-----AAQLGDVHSLRLALDNLSGSIDEPVEDG 71
+ G N++L +T LR A AA+ G V L++ LD + ++ G
Sbjct: 143 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 202
Query: 72 DTALHLTCLYG----YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
AL L LLL+ GA + + E G PL A + +VQ L+
Sbjct: 203 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +E G LH G L ++ LL +GA + A D+ PL A G + V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 124 INSAS 128
++ +
Sbjct: 88 LSKGA 92
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 26 VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS-IDEPVEDGDTALHLTCLYGYL 84
VN LE P L AA G + L L L G+ I+ P + T L G++
Sbjct: 28 VNRTLEGGRKP----LHYAADCGQLEILEFLL--LKGADINAPDKHHITPLLSAVYEGHV 81
Query: 85 PCVQLLLERGASLEAKDEDGAIPL 108
CV+LLL +GA K DG L
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +E G LH G L ++ LL +GA + A D+ PL A G + V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 124 INSAS 128
++ +
Sbjct: 93 LSKGA 97
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 26 VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS-IDEPVEDGDTALHLTCLYGYL 84
VN LE P L AA G + L L L G+ I+ P + T L G++
Sbjct: 33 VNRTLEGGRKP----LHYAADCGQLEILEFLL--LKGADINAPDKHHITPLLSAVYEGHV 86
Query: 85 PCVQLLLERGASLEAKDEDG 104
CV+LLL +GA K DG
Sbjct: 87 SCVKLLLSKGADKTVKGPDG 106
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
+P L LA D+ ++ L L L + + G TAL L +G + V+ LL
Sbjct: 147 SPIMLTALATLKTQDDIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC 205
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
A + +D+DG+ L AC G EI LL+
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 20 LFEEDGVNMDLESE---TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVE-DGDTAL 75
+ + G N+D SE TP L AA+ + +++ + +G++ +P + +G T L
Sbjct: 29 MLVQAGANIDTCSEDQRTP-----LMEAAENNHLEAVKYLIK--AGALVDPKDAEGSTCL 81
Query: 76 HLTCLYGYLPCVQLLLERGA-SLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
HL G+ VQ LL G + +D+ G P+ A +++V+LL++ S
Sbjct: 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++ + LH G++ +L++ GA+++ ED PL +A +E V+ LI + +
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 129 GTECVKRMLETVDAEGDT 146
+++ DAEG T
Sbjct: 69 -------LVDPKDAEGST 79
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
GD+ LH+ CV L L R + + K+++G PL
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
E ETP AA+ D +L L++ +D E+G TAL G CV+LL
Sbjct: 44 EYETP-----WWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLL 96
Query: 91 LERGASLEAKDEDGAI-PLHDACAGGFI--EIVQLLI 124
E GA L+ +D G + LH A G++ E+V+ L+
Sbjct: 97 AEAGADLDHRDMRGGLTALH--MAAGYVRPEVVEALV 131
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
G TALH+ Y V+ L+E GA +E +DE G L
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 29 DLESETPPHLR-DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
D TP HL + A +G V + +L + +G T LHL ++GYL V
Sbjct: 75 DFRGNTPLHLACEQGCLASVG-VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 88 QLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSAS 128
+LL+ GA + A++ +G LH A ++V LL+ +
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
T LHL + + LL G E +D G PLH AC G + V +L S + T
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPH 105
Query: 133 VKRMLETVDAEGDT 146
+ +L+ + G T
Sbjct: 106 LHSILKATNYNGHT 119
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
E ETP AA+ D +L L++ +D E+G TAL G CV+LL
Sbjct: 43 EYETP-----WWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLL 95
Query: 91 LERGASLEAKDEDGAI-PLHDACAGGFI--EIVQLLI 124
E GA L+ +D G + LH A G++ E+V+ L+
Sbjct: 96 AEAGADLDHRDMRGGLTALH--MAAGYVRPEVVEALV 130
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
G TALH+ Y V+ L+E GA +E +DE G L
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 29 DLESETPPHLR-DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
D TP HL + A +G V + +L + +G T LHL ++GYL V
Sbjct: 72 DFRGNTPLHLACEQGCLASVG-VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 88 QLLLERGASLEAKDE-DGAIPLHDA 111
+LL+ GA + A++ +G LH A
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLA 155
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGAS------LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G+T LHL C G L V +L + + L+A + +G LH A G++ IV+LL+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 125 N 125
+
Sbjct: 135 S 135
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
T LHL + + LL G E +D G PLH AC G + V +L S + T
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TP 101
Query: 132 CVKRMLETVDAEGDT 146
+ +L+ + G T
Sbjct: 102 HLHSILKATNYNGHT 116
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 68 VEDGDTALHLTCLYGYLPCVQLLLERGAS---LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
EDGDTALHL ++ + P + LL A L+ +++ G LH A G V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 125 NSASGTECVKR 135
+ +G +R
Sbjct: 66 AAGAGVLVAER 76
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH+ ++ V+LL + GA L + G PLH A +++LL+ +
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--A 214
Query: 129 GTECVKRM 136
G + RM
Sbjct: 215 GADPTARM 222
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
G TALHL + G V+ L GA + + G LH AC
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 68 VEDGDTALHLTCLYGYLPCVQLLLERGAS---LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
EDGDTALHL ++ + P + LL A L+ +++ G LH A G V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 125 NSASGTECVKR 135
+ +G +R
Sbjct: 66 AAGAGVLVAER 76
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH+ ++ V+LL + GA L + G PLH A +++LL+ +
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--A 214
Query: 129 GTECVKRM 136
G + RM
Sbjct: 215 GADPTARM 222
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
G TALHL + G V+ L GA + + G LH AC
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTAL--HLTCLYG---YLPCVQLLLERGA 95
L AA+ G + +++L L++ ID + G TAL + G Y V+LL+E GA
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLL 123
KD G + A G+ EI ++L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L AA D ++ L + + +DE +G+T L++ + + L++RGA + +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSAS 128
+ P A A G EI+ ++ A+
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHAT 96
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
AA G++ ++ A+ ++ +P E+G TALH V L+ GA++ + D
Sbjct: 28 AALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 104 GAIPLHDACA 113
G PLH A +
Sbjct: 87 GWTPLHCAAS 96
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G LH + G+ L L+RGA L A+D +G PL A +IV LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G LH + G+ L L+RGA L A+D +G PL A +IV LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G LH + G+ L L+RGA L A+D +G PL A +IV LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALD-NLSGSIDEPVEDGDTALHLTCLYGYLPC 86
MD TP + AA + V RL L N+S ++ + +TALH L G
Sbjct: 138 MDQNGMTPL----MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-NTALHWAVLAGNTTV 192
Query: 87 VQLLLERGASLEAKDEDG 104
+ LLLE GA+++A++ G
Sbjct: 193 ISLLLEAGANVDAQNIKG 210
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
+G + +HL +G+ V L+ +G ++ D++G PL
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 57 LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116
+D L G ++ T LH G+L V L++ GA D +G +H A G
Sbjct: 68 VDQLGGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 117 IEIVQLLI 124
IV LI
Sbjct: 122 TSIVAYLI 129
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-------------GAIPLHDACAGGF 116
+G TALH+ + + V+ LL RGAS+ A+ G PL A G
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 117 IEIVQLLI 124
EIV+LLI
Sbjct: 134 EEIVRLLI 141
>pdb|1W4T|A Chain A, X-Ray Crystallographic Structure Of Pseudomonas
Aeruginosa Arylamine N-Acetyltransferase
Length = 299
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 3 VPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG 62
VPR M E+ +A G++ PP L +L +L D H R+A +NL
Sbjct: 15 VPRGSHMTPLTPEQTHAYLHHIGID----DPGPPSLANLD---RLIDAHLRRVAFENLDV 67
Query: 63 SIDEPVE 69
+D P+E
Sbjct: 68 LLDRPIE 74
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 70 DGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDA 111
G TALH G YL +++L++ GAS AKD+ PL A
Sbjct: 137 KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRA 180
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 75 LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+H+ G V+ L+E G S ++ G LH AC G ++ + L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAK 100
G +ALH+ L CV+LL+E GA++ A+
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHAR 124
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 5 RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG 48
R + +E + ED AL + VN S PPH R L A ++G
Sbjct: 342 RGRVFDEAGAREDLALMKRFNVNAIRTSHYPPHPRLLDLADEMG 385
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 30 LESETPPHLR--DLAAAAQLGDVHSLRLALDNL--SGSIDEPVEDG-DTALHLTCLY 81
+E+ T P L D+A AQLG S ++ +DN S ++ +P+ G D LH T Y
Sbjct: 157 VETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTXY 213
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 19/46 (41%)
Query: 45 AQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
A LGD H L + L G I ED D L YG CV L
Sbjct: 918 AALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYL 963
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,231,763
Number of Sequences: 62578
Number of extensions: 203457
Number of successful extensions: 675
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 343
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)